Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880041995.01.T01 | KEH17972.1 | 80.741 | 135 | 26 | 0 | 1 | 135 | 100 | 234 | 1.14E-71 | 232 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880041995.01.T01 | Q9AR73 | 45.185 | 135 | 74 | 0 | 1 | 135 | 99 | 233 | 6.21E-40 | 142 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880041995.01.T01 | A0A072TKM2 | 80.741 | 135 | 26 | 0 | 1 | 135 | 100 | 234 | 5.45e-72 | 232 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048909.01 | MsG0880041995.01 | 0.818162 | 2.263798e-52 | 1.681646e-49 |
MsG0080048992.01 | MsG0880041995.01 | 0.827058 | 1.929623e-54 | 1.842224e-51 |
MsG0080049016.01 | MsG0880041995.01 | 0.843020 | 1.811565e-58 | 2.796821e-55 |
MsG0080049018.01 | MsG0880041995.01 | 0.855154 | 7.633261e-62 | 1.745529e-58 |
MsG0080049023.01 | MsG0880041995.01 | 0.802222 | 6.215040e-49 | 3.027665e-46 |
MsG0180000417.01 | MsG0880041995.01 | 0.806166 | 9.388333e-50 | 5.060667e-47 |
MsG0180000459.01 | MsG0880041995.01 | 0.815824 | 7.584109e-52 | 5.284367e-49 |
MsG0180000719.01 | MsG0880041995.01 | 0.807094 | 5.978051e-50 | 3.299988e-47 |
MsG0180001054.01 | MsG0880041995.01 | 0.820134 | 8.050965e-53 | 6.317566e-50 |
MsG0180001615.01 | MsG0880041995.01 | 0.826966 | 2.029002e-54 | 1.932088e-51 |
MsG0180003350.01 | MsG0880041995.01 | 0.814032 | 1.893770e-51 | 1.256796e-48 |
MsG0180004193.01 | MsG0880041995.01 | 0.840013 | 1.122387e-57 | 1.578062e-54 |
MsG0180004458.01 | MsG0880041995.01 | 0.804885 | 1.742183e-49 | 9.088103e-47 |
MsG0180004773.01 | MsG0880041995.01 | 0.824878 | 6.358591e-54 | 5.704470e-51 |
MsG0180004937.01 | MsG0880041995.01 | 0.803265 | 3.785397e-49 | 1.893788e-46 |
MsG0180005758.01 | MsG0880041995.01 | -0.802276 | 6.057492e-49 | 2.955087e-46 |
MsG0280006451.01 | MsG0880041995.01 | 0.818492 | 1.905177e-52 | 1.428274e-49 |
MsG0780040849.01 | MsG0880041995.01 | 0.825975 | 3.496805e-54 | 3.236569e-51 |
MsG0780041121.01 | MsG0880041995.01 | 0.810068 | 1.385242e-50 | 8.269553e-48 |
MsG0780041618.01 | MsG0880041995.01 | 0.818229 | 2.185656e-52 | 1.626567e-49 |
MsG0880041994.01 | MsG0880041995.01 | 0.855118 | 7.814938e-62 | 1.784985e-58 |
MsG0880041995.01 | MsG0880043515.01 | 0.819629 | 1.050558e-52 | 8.127175e-50 |
MsG0880041995.01 | MsG0880044333.01 | 0.821710 | 3.492999e-53 | 2.863668e-50 |
MsG0880041995.01 | MsG0880045150.01 | 0.805591 | 1.239515e-49 | 6.583553e-47 |
MsG0880041995.01 | MsG0880045170.01 | 0.814757 | 1.309525e-51 | 8.862508e-49 |
MsG0880041995.01 | MsG0880045369.01 | 0.801354 | 9.368040e-49 | 4.464417e-46 |
MsG0880041995.01 | MsG0880045400.01 | 0.827142 | 1.842037e-54 | 1.762994e-51 |
MsG0880041995.01 | MsG0880045755.01 | 0.854158 | 1.482856e-61 | 3.281893e-58 |
MsG0880041995.01 | MsG0880046189.01 | 0.802989 | 4.317088e-49 | 2.144519e-46 |
MsG0880041995.01 | MsG0880046574.01 | 0.832418 | 9.559882e-56 | 1.067924e-52 |
MsG0880041995.01 | MsG0880046630.01 | 0.807472 | 4.971183e-50 | 2.771413e-47 |
MsG0880041995.01 | MsG0880046856.01 | 0.813881 | 2.044617e-51 | 1.351380e-48 |
MsG0880041995.01 | MsG0880046968.01 | 0.813030 | 3.146469e-51 | 2.032087e-48 |
MsG0880041995.01 | MsG0880047251.01 | 0.830590 | 2.695496e-55 | 2.852523e-52 |
MsG0280010994.01 | MsG0880041995.01 | 0.818326 | 2.077696e-52 | 1.550444e-49 |
MsG0280011066.01 | MsG0880041995.01 | 0.819832 | 9.442468e-53 | 7.346596e-50 |
MsG0680030875.01 | MsG0880041995.01 | 0.815310 | 9.870979e-52 | 6.781689e-49 |
MsG0680030878.01 | MsG0880041995.01 | 0.818568 | 1.831452e-52 | 1.375791e-49 |
MsG0680030879.01 | MsG0880041995.01 | 0.808379 | 3.187819e-50 | 1.819993e-47 |
MsG0680033952.01 | MsG0880041995.01 | 0.823453 | 1.374187e-53 | 1.183657e-50 |
MsG0680035612.01 | MsG0880041995.01 | 0.805886 | 1.074797e-49 | 5.752241e-47 |
MsG0480019046.01 | MsG0880041995.01 | 0.804110 | 2.528667e-49 | 1.292840e-46 |
MsG0480019604.01 | MsG0880041995.01 | 0.813976 | 1.948858e-51 | 1.291336e-48 |
MsG0480020550.01 | MsG0880041995.01 | 0.813077 | 3.071779e-51 | 1.986309e-48 |
MsG0480021563.01 | MsG0880041995.01 | 0.844352 | 7.972013e-59 | 1.283522e-55 |
MsG0480022002.01 | MsG0880041995.01 | 0.825225 | 5.262965e-54 | 4.768358e-51 |
MsG0480022150.01 | MsG0880041995.01 | 0.805777 | 1.132914e-49 | 6.046485e-47 |
MsG0480022935.01 | MsG0880041995.01 | 0.822766 | 1.987125e-53 | 1.678936e-50 |
MsG0480022968.01 | MsG0880041995.01 | -0.800307 | 1.532532e-48 | 7.112592e-46 |
MsG0480023006.01 | MsG0880041995.01 | 0.802522 | 5.391080e-49 | 2.646335e-46 |
MsG0480023056.01 | MsG0880041995.01 | 0.814570 | 1.440337e-51 | 9.699121e-49 |
MsG0480023469.01 | MsG0880041995.01 | 0.807616 | 4.633628e-50 | 2.592727e-47 |
MsG0480023695.01 | MsG0880041995.01 | 0.800662 | 1.297217e-48 | 6.074764e-46 |
MsG0480023708.01 | MsG0880041995.01 | 0.801084 | 1.063696e-48 | 5.034998e-46 |
MsG0480023850.01 | MsG0880041995.01 | 0.828378 | 9.296171e-55 | 9.224090e-52 |
MsG0580024688.01 | MsG0880041995.01 | 0.812489 | 4.132044e-51 | 2.630875e-48 |
MsG0580024768.01 | MsG0880041995.01 | 0.849855 | 2.473702e-60 | 4.753627e-57 |
MsG0380015446.01 | MsG0880041995.01 | -0.807320 | 5.355352e-50 | 2.973791e-47 |
MsG0380016492.01 | MsG0880041995.01 | 0.818552 | 1.846617e-52 | 1.386630e-49 |
MsG0380016718.01 | MsG0880041995.01 | 0.808864 | 2.511234e-50 | 1.451976e-47 |
MsG0380017385.01 | MsG0880041995.01 | 0.830254 | 3.257551e-55 | 3.414042e-52 |
MsG0380017762.01 | MsG0880041995.01 | 0.813133 | 2.985900e-51 | 1.933714e-48 |
MsG0480018088.01 | MsG0880041995.01 | 0.821041 | 4.984132e-53 | 4.010817e-50 |
MsG0580028092.01 | MsG0880041995.01 | 0.806596 | 7.616488e-50 | 4.150690e-47 |
MsG0580028159.01 | MsG0880041995.01 | 0.800430 | 1.446329e-48 | 6.733389e-46 |
MsG0580028285.01 | MsG0880041995.01 | 0.825410 | 4.758985e-54 | 4.334205e-51 |
MsG0580028398.01 | MsG0880041995.01 | 0.824692 | 7.034011e-54 | 6.277100e-51 |
MsG0580029706.01 | MsG0880041995.01 | 0.810030 | 1.411268e-50 | 8.416990e-48 |
MsG0580029820.01 | MsG0880041995.01 | 0.852863 | 3.491946e-61 | 7.399680e-58 |
MsG0680030441.01 | MsG0880041995.01 | 0.814161 | 1.773843e-51 | 1.181308e-48 |
MsG0680030644.01 | MsG0880041995.01 | 0.854871 | 9.218638e-62 | 2.088645e-58 |
MsG0280006534.01 | MsG0880041995.01 | 0.827093 | 1.892536e-54 | 1.808739e-51 |
MsG0280007600.01 | MsG0880041995.01 | 0.830444 | 2.926273e-55 | 3.083467e-52 |
MsG0280010047.01 | MsG0880041995.01 | -0.800366 | 1.490532e-48 | 6.927902e-46 |
MsG0280010461.01 | MsG0880041995.01 | 0.850471 | 1.662716e-60 | 3.260359e-57 |
MsG0280010523.01 | MsG0880041995.01 | 0.806691 | 7.273726e-50 | 3.973520e-47 |
MsG0780036583.01 | MsG0880041995.01 | 0.805558 | 1.259574e-49 | 6.684183e-47 |
MsG0780036925.01 | MsG0880041995.01 | 0.807588 | 4.697428e-50 | 2.626439e-47 |
MsG0780036939.01 | MsG0880041995.01 | 0.827295 | 1.692480e-54 | 1.627227e-51 |
MsG0780037458.01 | MsG0880041995.01 | 0.805349 | 1.393383e-49 | 7.354927e-47 |
MsG0780037963.01 | MsG0880041995.01 | 0.805400 | 1.359906e-49 | 7.187487e-47 |
MsG0780038030.01 | MsG0880041995.01 | 0.806127 | 9.567684e-50 | 5.152053e-47 |
MsG0780038108.01 | MsG0880041995.01 | 0.829783 | 4.243648e-55 | 4.387762e-52 |
MsG0780038263.01 | MsG0880041995.01 | 0.814999 | 1.157467e-51 | 7.885057e-49 |
MsG0780039401.01 | MsG0880041995.01 | 0.808272 | 3.359749e-50 | 1.912791e-47 |
MsG0780039508.01 | MsG0880041995.01 | 0.803812 | 2.915154e-49 | 1.479110e-46 |
MsG0780039879.01 | MsG0880041995.01 | 0.814776 | 1.296959e-51 | 8.781933e-49 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880041995.01.T01 | MTR_8g009073 | 80.741 | 135 | 26 | 0 | 1 | 135 | 100 | 234 | 1.38e-75 | 232 |
MsG0880041995.01.T01 | MTR_1g019510 | 81.481 | 135 | 25 | 0 | 1 | 135 | 100 | 234 | 9.82e-74 | 227 |
MsG0880041995.01.T01 | MTR_8g008970 | 75.000 | 132 | 33 | 0 | 1 | 132 | 100 | 231 | 1.20e-66 | 215 |
MsG0880041995.01.T01 | MTR_8g008970 | 59.574 | 47 | 19 | 0 | 89 | 135 | 527 | 573 | 9.00e-13 | 64.3 |
MsG0880041995.01.T01 | MTR_8g009067 | 71.970 | 132 | 37 | 0 | 1 | 132 | 100 | 231 | 7.45e-64 | 202 |
MsG0880041995.01.T01 | MTR_8g009063 | 65.926 | 135 | 46 | 0 | 1 | 135 | 107 | 241 | 4.72e-63 | 200 |
MsG0880041995.01.T01 | MTR_8g009073 | 80.000 | 105 | 21 | 0 | 31 | 135 | 1 | 105 | 5.11e-58 | 183 |
MsG0880041995.01.T01 | MTR_8g008990 | 62.963 | 135 | 50 | 0 | 1 | 135 | 100 | 234 | 1.51e-57 | 185 |
MsG0880041995.01.T01 | MTR_8g009055 | 59.259 | 135 | 55 | 0 | 1 | 135 | 100 | 234 | 4.36e-55 | 179 |
MsG0880041995.01.T01 | MTR_8g009067 | 70.796 | 113 | 33 | 0 | 20 | 132 | 1 | 113 | 2.58e-54 | 174 |
MsG0880041995.01.T01 | MTR_8g009050 | 59.259 | 135 | 55 | 0 | 1 | 135 | 100 | 234 | 1.82e-53 | 174 |
MsG0880041995.01.T01 | MTR_0078s0010 | 50.382 | 131 | 65 | 0 | 1 | 131 | 100 | 230 | 5.22e-40 | 139 |
MsG0880041995.01.T01 | MTR_7g047030 | 50.382 | 131 | 65 | 0 | 1 | 131 | 100 | 230 | 1.88e-39 | 138 |
MsG0880041995.01.T01 | MTR_7g047270 | 50.382 | 131 | 65 | 0 | 1 | 131 | 100 | 230 | 1.88e-39 | 138 |
MsG0880041995.01.T01 | MTR_0078s0200 | 49.587 | 121 | 61 | 0 | 9 | 129 | 111 | 231 | 4.96e-38 | 131 |
MsG0880041995.01.T01 | MTR_0078s0060 | 50.746 | 134 | 66 | 0 | 1 | 134 | 100 | 233 | 2.70e-37 | 132 |
MsG0880041995.01.T01 | MTR_0184s0040 | 48.092 | 131 | 68 | 0 | 1 | 131 | 115 | 245 | 2.83e-37 | 132 |
MsG0880041995.01.T01 | MTR_0078s0190 | 48.092 | 131 | 68 | 0 | 1 | 131 | 115 | 245 | 2.83e-37 | 132 |
MsG0880041995.01.T01 | MTR_0184s0030 | 49.587 | 121 | 61 | 0 | 9 | 129 | 111 | 231 | 1.24e-36 | 130 |
MsG0880041995.01.T01 | MTR_8g006260 | 46.032 | 126 | 68 | 0 | 1 | 126 | 103 | 228 | 4.64e-36 | 129 |
MsG0880041995.01.T01 | MTR_7g117170 | 41.935 | 124 | 72 | 0 | 10 | 133 | 118 | 241 | 1.44e-34 | 125 |
MsG0880041995.01.T01 | MTR_8g006270 | 45.968 | 124 | 67 | 0 | 5 | 128 | 101 | 224 | 2.01e-31 | 116 |
MsG0880041995.01.T01 | MTR_8g077590 | 45.736 | 129 | 69 | 1 | 5 | 132 | 107 | 235 | 2.12e-31 | 116 |
MsG0880041995.01.T01 | MTR_8g006230 | 40.000 | 125 | 75 | 0 | 11 | 135 | 53 | 177 | 1.65e-29 | 108 |
MsG0880041995.01.T01 | MTR_8g027870 | 41.739 | 115 | 64 | 1 | 12 | 126 | 121 | 232 | 2.06e-27 | 105 |
MsG0880041995.01.T01 | MTR_8g027885 | 41.739 | 115 | 64 | 1 | 12 | 126 | 121 | 232 | 5.63e-27 | 104 |
MsG0880041995.01.T01 | MTR_8g012745 | 42.857 | 119 | 67 | 1 | 8 | 125 | 108 | 226 | 1.46e-26 | 103 |
MsG0880041995.01.T01 | MTR_6g005660 | 40.441 | 136 | 80 | 1 | 1 | 135 | 101 | 236 | 2.35e-26 | 99.8 |
MsG0880041995.01.T01 | MTR_8g012650 | 40.945 | 127 | 74 | 1 | 3 | 128 | 103 | 229 | 4.63e-26 | 102 |
MsG0880041995.01.T01 | MTR_8g012635 | 43.443 | 122 | 68 | 1 | 8 | 128 | 108 | 229 | 2.39e-25 | 99.8 |
MsG0880041995.01.T01 | MTR_6g005600 | 39.706 | 136 | 81 | 1 | 1 | 135 | 101 | 236 | 9.64e-25 | 98.2 |
MsG0880041995.01.T01 | MTR_7g046490 | 45.312 | 128 | 70 | 0 | 1 | 128 | 100 | 227 | 1.70e-23 | 94.7 |
MsG0880041995.01.T01 | MTR_8g012630 | 49.367 | 79 | 39 | 1 | 5 | 82 | 106 | 184 | 6.25e-19 | 81.6 |
MsG0880041995.01.T01 | MTR_8g074550 | 38.168 | 131 | 78 | 2 | 1 | 131 | 103 | 230 | 8.42e-19 | 81.6 |
MsG0880041995.01.T01 | MTR_8g006710 | 33.083 | 133 | 84 | 3 | 1 | 128 | 98 | 230 | 1.60e-13 | 66.6 |
MsG0880041995.01.T01 | MTR_8g465670 | 32.520 | 123 | 81 | 2 | 7 | 127 | 109 | 231 | 2.54e-13 | 65.9 |
MsG0880041995.01.T01 | MTR_8g006220 | 32.520 | 123 | 81 | 2 | 7 | 127 | 108 | 230 | 3.13e-13 | 65.5 |
MsG0880041995.01.T01 | MTR_6g033660 | 28.125 | 128 | 91 | 1 | 1 | 127 | 106 | 233 | 3.30e-13 | 65.5 |
MsG0880041995.01.T01 | MTR_8g006730 | 30.827 | 133 | 87 | 3 | 1 | 128 | 99 | 231 | 5.65e-13 | 64.7 |
MsG0880041995.01.T01 | MTR_6g023665 | 30.769 | 130 | 87 | 3 | 1 | 127 | 107 | 236 | 9.47e-13 | 64.3 |
MsG0880041995.01.T01 | MTR_6g488280 | 31.538 | 130 | 86 | 3 | 1 | 127 | 100 | 229 | 3.34e-12 | 62.8 |
MsG0880041995.01.T01 | MTR_0428s0010 | 31.538 | 130 | 86 | 3 | 1 | 127 | 100 | 229 | 3.34e-12 | 62.8 |
MsG0880041995.01.T01 | MTR_6g033725 | 25.984 | 127 | 92 | 1 | 1 | 125 | 103 | 229 | 1.90e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880041995.01.T01 | AT4G01070 | 41.600 | 125 | 73 | 0 | 11 | 135 | 112 | 236 | 2.06e-33 | 120 |
MsG0880041995.01.T01 | AT4G01070 | 41.600 | 125 | 73 | 0 | 11 | 135 | 112 | 236 | 1.56e-32 | 119 |
MsG0880041995.01.T01 | AT1G01390 | 40.650 | 123 | 73 | 0 | 13 | 135 | 114 | 236 | 3.30e-30 | 113 |
MsG0880041995.01.T01 | AT1G01390 | 40.650 | 123 | 73 | 0 | 13 | 135 | 131 | 253 | 3.42e-30 | 113 |
MsG0880041995.01.T01 | AT1G01420 | 39.535 | 129 | 77 | 1 | 7 | 135 | 112 | 239 | 9.96e-30 | 112 |
MsG0880041995.01.T01 | AT1G01420 | 39.535 | 129 | 77 | 1 | 7 | 135 | 109 | 236 | 1.05e-29 | 112 |
MsG0880041995.01.T01 | AT5G66690 | 35.088 | 114 | 74 | 0 | 12 | 125 | 107 | 220 | 3.06e-15 | 71.2 |
MsG0880041995.01.T01 | AT2G18570 | 34.109 | 129 | 77 | 4 | 4 | 128 | 103 | 227 | 4.57e-15 | 70.9 |
MsG0880041995.01.T01 | AT2G18560 | 31.034 | 116 | 80 | 0 | 13 | 128 | 22 | 137 | 6.98e-14 | 67.4 |
MsG0880041995.01.T01 | AT3G50740 | 28.448 | 116 | 83 | 0 | 12 | 127 | 112 | 227 | 3.64e-13 | 65.5 |
MsG0880041995.01.T01 | AT5G26310 | 30.000 | 130 | 84 | 1 | 5 | 127 | 93 | 222 | 2.47e-12 | 63.2 |
Find 25 sgRNAs with CRISPR-Local
Find 26 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTATGAAATCCTTAACTTTA+AGG | 0.150458 | 8:-2286184 | MsG0880041995.01.T01:CDS |
TGCAATTGAAGCATTAAATT+TGG | 0.158797 | 8:-2286129 | MsG0880041995.01.T01:CDS |
TCTTCTGTGAGTGCTTCTAT+AGG | 0.359525 | 8:+2285822 | None:intergenic |
AAAAGGTGTCCTTAAAGTTA+AGG | 0.363066 | 8:+2286175 | None:intergenic |
GGTCCAACAGCTTAAACATC+AGG | 0.423805 | 8:+2285786 | None:intergenic |
CCAGAGCCTCTTAAAGTACC+AGG | 0.432347 | 8:-2285990 | MsG0880041995.01.T01:CDS |
ACACAACCTGGTACTTTAAG+AGG | 0.438976 | 8:+2285984 | None:intergenic |
GACAAAGTTGTGACTGAAGC+AGG | 0.441595 | 8:+2286071 | None:intergenic |
GACTTGATCTATCTTGAGCT+TGG | 0.458150 | 8:+2285934 | None:intergenic |
CCTGGTACTTTAAGAGGCTC+TGG | 0.459752 | 8:+2285990 | None:intergenic |
GAACATTCCGTTCTGTTGAC+GGG | 0.460484 | 8:-2285881 | MsG0880041995.01.T01:CDS |
TGAAGCATTAAATTTGGCTA+AGG | 0.482987 | 8:-2286123 | MsG0880041995.01.T01:CDS |
ATAGAAGCACTCACAGAAGA+AGG | 0.498098 | 8:-2285819 | MsG0880041995.01.T01:CDS |
TTGTGTACTGATTCACGGTC+GGG | 0.500136 | 8:-2285967 | MsG0880041995.01.T01:CDS |
AGAACATTCCGTTCTGTTGA+CGG | 0.503976 | 8:-2285882 | MsG0880041995.01.T01:CDS |
TCAACCACCAAGGCCACAAA+AGG | 0.509857 | 8:+2286158 | None:intergenic |
CCAGGTTGTGTACTGATTCA+CGG | 0.553171 | 8:-2285972 | MsG0880041995.01.T01:CDS |
GCACTCACAGAAGAAGGAAG+TGG | 0.564801 | 8:-2285813 | MsG0880041995.01.T01:CDS |
CTATATGCTCAAATATGACA+AGG | 0.580217 | 8:-2286039 | MsG0880041995.01.T01:CDS |
GTTGTGTACTGATTCACGGT+CGG | 0.587026 | 8:-2285968 | MsG0880041995.01.T01:CDS |
CCGTGAATCAGTACACAACC+TGG | 0.589117 | 8:+2285972 | None:intergenic |
GTCCAACAGCTTAAACATCA+GGG | 0.605783 | 8:+2285787 | None:intergenic |
TAAGAATCCCGTCAACAGAA+CGG | 0.627171 | 8:+2285874 | None:intergenic |
TGAAGCAGGAAAGTAAACAT+AGG | 0.627209 | 8:+2286085 | None:intergenic |
TGCAAAAGAATCAACCACCA+AGG | 0.684027 | 8:+2286148 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGCTTTTTAGAAATTGAAAA+AGG | - | Chr8:2286133-2286152 | MsG0880041995.01.T01:CDS | 20.0% |
!! | TGCAATTGAAGCATTAAATT+TGG | - | Chr8:2285850-2285869 | MsG0880041995.01.T01:CDS | 25.0% |
CTATATGCTCAAATATGACA+AGG | - | Chr8:2285940-2285959 | MsG0880041995.01.T01:CDS | 30.0% | |
! | TGAAGCATTAAATTTGGCTA+AGG | - | Chr8:2285856-2285875 | MsG0880041995.01.T01:CDS | 30.0% |
!! | AAAAGGTGTCCTTAAAGTTA+AGG | + | Chr8:2285807-2285826 | None:intergenic | 30.0% |
TGAAGCAGGAAAGTAAACAT+AGG | + | Chr8:2285897-2285916 | None:intergenic | 35.0% | |
!! | AACTTTAAGGACACCTTTTG+TGG | - | Chr8:2285808-2285827 | MsG0880041995.01.T01:CDS | 35.0% |
ACACAACCTGGTACTTTAAG+AGG | + | Chr8:2285998-2286017 | None:intergenic | 40.0% | |
AGAACATTCCGTTCTGTTGA+CGG | - | Chr8:2286097-2286116 | MsG0880041995.01.T01:CDS | 40.0% | |
GACTTGATCTATCTTGAGCT+TGG | + | Chr8:2286048-2286067 | None:intergenic | 40.0% | |
TAAGAATCCCGTCAACAGAA+CGG | + | Chr8:2286108-2286127 | None:intergenic | 40.0% | |
TCTTCTGTGAGTGCTTCTAT+AGG | + | Chr8:2286160-2286179 | None:intergenic | 40.0% | |
TGCAAAAGAATCAACCACCA+AGG | + | Chr8:2285834-2285853 | None:intergenic | 40.0% | |
!! | ATAGAAGCACTCACAGAAGA+AGG | - | Chr8:2286160-2286179 | MsG0880041995.01.T01:CDS | 40.0% |
GAACATTCCGTTCTGTTGAC+GGG | - | Chr8:2286098-2286117 | MsG0880041995.01.T01:CDS | 45.0% | |
GACAAAGTTGTGACTGAAGC+AGG | + | Chr8:2285911-2285930 | None:intergenic | 45.0% | |
!! | CCAGGTTGTGTACTGATTCA+CGG | - | Chr8:2286007-2286026 | MsG0880041995.01.T01:CDS | 45.0% |
!! | GTTGTGTACTGATTCACGGT+CGG | - | Chr8:2286011-2286030 | MsG0880041995.01.T01:CDS | 45.0% |
!! | TTGTGTACTGATTCACGGTC+GGG | - | Chr8:2286012-2286031 | MsG0880041995.01.T01:CDS | 45.0% |
CCGTGAATCAGTACACAACC+TGG | + | Chr8:2286010-2286029 | None:intergenic | 50.0% | |
GCACTCACAGAAGAAGGAAG+TGG | - | Chr8:2286166-2286185 | MsG0880041995.01.T01:CDS | 50.0% | |
TCAACCACCAAGGCCACAAA+AGG | + | Chr8:2285824-2285843 | None:intergenic | 50.0% | |
! | AAGGACACCTTTTGTGGCCT+TGG | - | Chr8:2285814-2285833 | MsG0880041995.01.T01:CDS | 50.0% |
! | CCAGAGCCTCTTAAAGTACC+AGG | - | Chr8:2285989-2286008 | MsG0880041995.01.T01:CDS | 50.0% |
! | CCTGGTACTTTAAGAGGCTC+TGG | + | Chr8:2285992-2286011 | None:intergenic | 50.0% |
!! | GACACCTTTTGTGGCCTTGG+TGG | - | Chr8:2285817-2285836 | MsG0880041995.01.T01:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 2285797 | 2286204 | 2285797 | ID=MsG0880041995.01;Name=MsG0880041995.01 |
Chr8 | mRNA | 2285797 | 2286204 | 2285797 | ID=MsG0880041995.01.T01;Parent=MsG0880041995.01;Name=MsG0880041995.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|135 |
Chr8 | exon | 2285797 | 2286204 | 2285797 | ID=MsG0880041995.01.T01:exon:1786;Parent=MsG0880041995.01.T01 |
Chr8 | CDS | 2285797 | 2286204 | 2285797 | ID=MsG0880041995.01.T01:cds;Parent=MsG0880041995.01.T01 |
Gene Sequence |
Protein sequence |