AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020550.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020550.01.T01 MTR_4g053420 98.163 381 7 0 1 381 1 381 0.0 785
MsG0480020550.01.T01 MTR_4g056100 75.000 380 92 2 3 379 8 387 0.0 618
MsG0480020550.01.T01 MTR_1g107455 74.659 367 90 2 3 366 8 374 0.0 591
MsG0480020550.01.T01 MTR_1g108530 70.185 379 92 3 3 378 8 368 0.0 555
MsG0480020550.01.T01 MTR_4g056100 77.815 302 64 2 3 301 8 309 0.0 511
MsG0480020550.01.T01 MTR_4g056100 77.778 270 57 2 3 269 8 277 2.77e-162 456
MsG0480020550.01.T01 MTR_2g041340 61.633 245 67 3 3 244 8 228 7.24e-103 303
MsG0480020550.01.T01 MTR_2g096660 28.324 346 197 11 14 357 38 334 8.88e-30 117
MsG0480020550.01.T01 MTR_4g045737 56.989 93 39 1 3 94 8 100 1.25e-29 110
MsG0480020550.01.T01 MTR_4g063600 27.168 346 198 11 14 357 32 325 2.25e-26 108
MsG0480020550.01.T01 MTR_1g088480 25.862 348 197 14 14 357 118 408 4.10e-23 100
MsG0480020550.01.T01 MTR_4g120030 24.638 345 201 11 16 357 113 401 7.51e-22 96.7
MsG0480020550.01.T01 MTR_1g067530 23.421 380 203 15 14 357 112 439 9.61e-17 82.0
MsG0480020550.01.T01 MTR_4g045693 55.556 54 24 0 3 56 7 60 6.40e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020550.01.T01 AT1G08200 75.066 381 92 2 2 379 6 386 0.0 617
MsG0480020550.01.T01 AT2G27860 74.016 381 96 2 2 379 6 386 0.0 608
MsG0480020550.01.T01 AT3G46440 27.746 346 199 10 14 357 29 325 1.90e-28 114
MsG0480020550.01.T01 AT3G46440 27.746 346 199 10 14 357 29 325 1.90e-28 114
MsG0480020550.01.T01 AT5G59290 27.457 346 200 11 14 357 1 297 6.77e-28 112
MsG0480020550.01.T01 AT5G59290 27.457 346 200 11 14 357 30 326 1.43e-27 111
MsG0480020550.01.T01 AT5G59290 27.507 349 202 11 11 357 20 319 1.67e-27 111
MsG0480020550.01.T01 AT5G59290 28.035 346 198 12 14 357 45 341 2.19e-27 111
MsG0480020550.01.T01 AT2G28760 27.746 346 199 11 14 357 31 327 2.21e-27 111
MsG0480020550.01.T01 AT2G28760 27.746 346 199 11 14 357 31 327 2.21e-27 111
MsG0480020550.01.T01 AT2G28760 27.746 346 199 11 14 357 31 327 2.21e-27 111
MsG0480020550.01.T01 AT2G28760 27.746 346 199 11 14 357 62 358 5.17e-27 110
MsG0480020550.01.T01 AT3G53520 28.857 350 189 17 14 357 120 415 5.59e-27 111
MsG0480020550.01.T01 AT3G53520 29.060 351 185 17 14 357 120 413 6.72e-25 105
MsG0480020550.01.T01 AT2G47650 26.149 348 207 13 14 357 121 422 9.65e-25 105
MsG0480020550.01.T01 AT3G62830 26.648 349 198 14 14 357 119 414 2.57e-24 104
MsG0480020550.01.T01 AT3G62830 26.648 349 198 14 14 357 119 414 2.57e-24 104
MsG0480020550.01.T01 AT2G47650 26.074 349 200 14 14 357 121 416 1.05e-23 102
MsG0480020550.01.T01 AT3G53520 27.451 255 146 11 14 264 120 339 1.14e-15 78.2

Find 93 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTGTCCATTTGCTCTATC+AGG 0.212687 4:-43242600 None:intergenic
TTAACAGATACTTCATTATC+TGG 0.251368 4:-43242639 None:intergenic
ATGACAGACAGGCTCATTTA+TGG 0.300625 4:+43241916 MsG0480020550.01.T01:CDS
CTATTGTGAGACCTTATAAC+TGG 0.307051 4:+43242219 MsG0480020550.01.T01:CDS
AGCAACTCTGCAAGTTGAAT+TGG 0.307114 4:+43243216 MsG0480020550.01.T01:exon
AGGGAAGCAAGAGACAAATA+AGG 0.328827 4:-43243415 None:intergenic
TTTCTACGTGTGAGGTCTTT+GGG 0.341819 4:+43241493 MsG0480020550.01.T01:CDS
AGTTCATCAAGAGATGTCTT+TGG 0.360698 4:-43243115 None:intergenic
CTTGGTCCAATCCAGTTATA+AGG 0.372591 4:-43242230 None:intergenic
CCAGGAATGAAGTCCATTCT+TGG 0.373462 4:-43242248 None:intergenic
TGATATAGAGAAAAGTTCTC+TGG 0.376155 4:-43242464 None:intergenic
TATGGCTTTGTGAGATGTTT+CGG 0.384939 4:-43240989 None:intergenic
CAACACACACAAAAGCTTCA+TGG 0.385239 4:+43240867 MsG0480020550.01.T01:exon
TGCAGAGTTGCTCAAGTTGA+AGG 0.385548 4:-43243205 None:intergenic
ACTAGCTGAGCTTATGATAA+AGG 0.394087 4:+43242665 MsG0480020550.01.T01:CDS
ATGGATCGAGTGAACCTTGA+TGG 0.398688 4:+43240886 MsG0480020550.01.T01:CDS
CATATTGAGATCGGCGTGAT+TGG 0.408770 4:-43240913 None:intergenic
CTGAAACAAGCTAAAACTCT+TGG 0.409574 4:-43242296 None:intergenic
CCAAGAATGGACTTCATTCC+TGG 0.411557 4:+43242248 MsG0480020550.01.T01:CDS
GACCATCTCTGTTTATGAAC+TGG 0.420386 4:-43241874 None:intergenic
TCCTTGATAAGTCTCATCCT+TGG 0.421329 4:+43241046 MsG0480020550.01.T01:CDS
GGATTATAACACGCGGCCTT+TGG 0.424145 4:+43241280 MsG0480020550.01.T01:CDS
GACATCTCTTGATGAACTGT+TGG 0.432077 4:+43243120 MsG0480020550.01.T01:CDS
AGAGGAGACATCAATGACTA+TGG 0.439801 4:-43241007 None:intergenic
CTGGTGATGATTGTCATGTC+AGG 0.448491 4:-43242881 None:intergenic
AAGCTTTGACGAGAGTTTCA+AGG 0.460030 4:-43241116 None:intergenic
TCTTTGAGCTTGTAATATTG+AGG 0.462050 4:-43241826 None:intergenic
CCTTGATAAGTCTCATCCTT+GGG 0.467401 4:+43241047 MsG0480020550.01.T01:CDS
GTGAGACCTTATAACTGGAT+TGG 0.470330 4:+43242224 MsG0480020550.01.T01:CDS
ATAGCTGAGCATGCGGAGAA+TGG 0.470908 4:+43242185 MsG0480020550.01.T01:intron
GAGGTCTTTGGGAAGACAAT+TGG 0.475078 4:+43241504 MsG0480020550.01.T01:CDS
AGCAGAAGATATATGACTAT+AGG 0.475669 4:-43243351 None:intergenic
TAACTGGATTGGACCAAGAA+TGG 0.477010 4:+43242235 MsG0480020550.01.T01:CDS
GAGCCTCTCAAACTTGTTGA+TGG 0.489187 4:+43242432 MsG0480020550.01.T01:CDS
GCGTGATTGGCTTTCCATCA+AGG 0.492660 4:-43240900 None:intergenic
GGGAAGCAAGAGACAAATAA+GGG 0.494455 4:-43243414 None:intergenic
GATAACCCTGATAGAGCAAA+TGG 0.495280 4:+43242594 MsG0480020550.01.T01:CDS
TAACAGATACTTCATTATCT+GGG 0.496503 4:-43242638 None:intergenic
TGTACCTTTCTATACTCCTC+AGG 0.497124 4:-43241537 None:intergenic
ATGTCTGATGTTGATATTGA+AGG 0.498197 4:-43243150 None:intergenic
TGAAACAAGCTAAAACTCTT+GGG 0.503701 4:-43242295 None:intergenic
AAGGTATATGCAAAGGTGGC+TGG 0.511233 4:+43242773 MsG0480020550.01.T01:intron
GACTTCATTCCTGGTGTGGA+TGG 0.515549 4:+43242257 MsG0480020550.01.T01:CDS
TAATTTCATCGATGCGATCC+CGG 0.523625 4:+43241316 MsG0480020550.01.T01:CDS
GATATAGAGAAAAGTTCTCT+GGG 0.525949 4:-43242463 None:intergenic
ATATGCATGATCGGCGGTGG+AGG 0.526513 4:+43240931 MsG0480020550.01.T01:CDS
TCAATATGCATGATCGGCGG+TGG 0.527392 4:+43240928 MsG0480020550.01.T01:CDS
AAGGTTATGATGACAGTGAT+AGG 0.529228 4:+43242852 MsG0480020550.01.T01:CDS
TCCCTCTAGTCTATCAACTC+TGG 0.531156 4:+43242802 MsG0480020550.01.T01:CDS
ACTCTTGGGACACCATCACT+TGG 0.533733 4:-43242281 None:intergenic
TGACAGAATACCAAGCTGCC+TGG 0.535237 4:-43242900 None:intergenic
GTTTGAGAGGCTCGCCACGC+AGG 0.539294 4:-43242422 None:intergenic
CCCAAGGATGAGACTTATCA+AGG 0.539968 4:-43241047 None:intergenic
CTATATCAAAGATGCAATTG+AGG 0.540832 4:+43242479 MsG0480020550.01.T01:CDS
TTTCATTAAGGTATATGCAA+AGG 0.543621 4:+43242766 MsG0480020550.01.T01:intron
ATTTGTCAGATTGTCTCTCA+TGG 0.544220 4:-43243280 None:intergenic
ACAATCATCACCAGGCAGCT+TGG 0.544555 4:+43242890 MsG0480020550.01.T01:CDS
TGTGTCCATTTGCTCTATCA+GGG 0.545363 4:-43242599 None:intergenic
AAATGGACACATCTTTAATG+TGG 0.547790 4:+43242611 MsG0480020550.01.T01:CDS
CATTAAGGTATATGCAAAGG+TGG 0.552476 4:+43242769 MsG0480020550.01.T01:intron
GTGCAAAGCAGATGACAGAC+AGG 0.570500 4:+43241905 MsG0480020550.01.T01:CDS
TCTTGCTGCGATTTGTACAC+CGG 0.572521 4:+43241256 MsG0480020550.01.T01:CDS
TCCAGAGTTGATAGACTAGA+GGG 0.573185 4:-43242803 None:intergenic
GGTGTGGATGGTCCAAGTGA+TGG 0.573258 4:+43242269 MsG0480020550.01.T01:CDS
CCGATCTCAATATGCATGAT+CGG 0.574639 4:+43240922 MsG0480020550.01.T01:CDS
AATTGGTAGCTTTCTGCCTG+AGG 0.575752 4:+43241521 MsG0480020550.01.T01:CDS
GTCCAGTTCATAAACAGAGA+TGG 0.576229 4:+43241872 MsG0480020550.01.T01:CDS
CCGATCATGCATATTGAGAT+CGG 0.578859 4:-43240922 None:intergenic
TCTGCCTGAGGAGTATAGAA+AGG 0.581092 4:+43241533 MsG0480020550.01.T01:CDS
CCTCTCAAACTTGTTGATGG+TGG 0.583373 4:+43242435 MsG0480020550.01.T01:CDS
AATGGACACATCTTTAATGT+GGG 0.590992 4:+43242612 MsG0480020550.01.T01:CDS
ATCGGCGGTGGAGGATTCAT+CGG 0.591414 4:+43240940 MsG0480020550.01.T01:CDS
AGCAAGAGACAAATAAGGGA+AGG 0.592479 4:-43243410 None:intergenic
TCACTTGGACCATCCACACC+AGG 0.596283 4:-43242266 None:intergenic
ATCCAGAGTTGATAGACTAG+AGG 0.603381 4:-43242804 None:intergenic
TCATCTGATGAAACTCGATA+CGG 0.612036 4:-43241074 None:intergenic
CTGACATGACAATCATCACC+AGG 0.624329 4:+43242882 MsG0480020550.01.T01:CDS
CCACCATCAACAAGTTTGAG+AGG 0.628826 4:-43242435 None:intergenic
TGTCTGATGTTGATATTGAA+GGG 0.635641 4:-43243149 None:intergenic
GGCCGCGTGTTATAATCCGC+CGG 0.636617 4:-43241275 None:intergenic
AACTCGATACGGTTAGCCCA+AGG 0.640625 4:-43241063 None:intergenic
TAAATCTATAGCTGAGCATG+CGG 0.640819 4:+43242178 MsG0480020550.01.T01:intron
TGGTGATGATTGTCATGTCA+GGG 0.642852 4:-43242880 None:intergenic
TTACTGTAAATAGTATCCAA+AGG 0.643272 4:-43241296 None:intergenic
AATGGACTTCATTCCTGGTG+TGG 0.645922 4:+43242253 MsG0480020550.01.T01:CDS
TGCTGCGATTTGTACACCGG+CGG 0.656615 4:+43241259 MsG0480020550.01.T01:CDS
GCAAGAGACAAATAAGGGAA+GGG 0.656696 4:-43243409 None:intergenic
TATATGATACACTAATTGTG+AGG 0.660077 4:+43243304 MsG0480020550.01.T01:three_prime_UTR
TTTCATCGATGCGATCCCGG+TGG 0.689547 4:+43241319 MsG0480020550.01.T01:CDS
ATCTCAATATGCATGATCGG+CGG 0.695000 4:+43240925 MsG0480020550.01.T01:CDS
AGAGTTGATAGACTAGAGGG+AGG 0.706272 4:-43242800 None:intergenic
TTGCTCTAGAATCTCCTGCG+TGG 0.708460 4:+43242408 MsG0480020550.01.T01:intron
CACCGGCGGATTATAACACG+CGG 0.709009 4:+43241273 MsG0480020550.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAAAAAGTAAATAAAAA+CGG - Chr4:43241181-43241200 None:intergenic 10.0%
!! TCATCAAAAATAAATAAAAA+TGG - Chr4:43241211-43241230 None:intergenic 10.0%
!!! AAAAAATTTAAAACATAACA+TGG + Chr4:43241595-43241614 MsG0480020550.01.T01:intron 10.0%
!! CTAAAAATTAAACATATCTT+TGG - Chr4:43241729-43241748 None:intergenic 15.0%
!!! ATGAATGTAATCATATTTTT+CGG + Chr4:43241669-43241688 MsG0480020550.01.T01:intron 15.0%
!!! TTATTTCTCTTTAAAAACAA+AGG - Chr4:43242724-43242743 None:intergenic 15.0%
!!! TTCTAAATTAGTTTTTAGAT+AGG + Chr4:43242692-43242711 MsG0480020550.01.T01:intron 15.0%
!!! ATTTTTGATGATGTTGTTTT+TGG + Chr4:43241220-43241239 MsG0480020550.01.T01:intron 20.0%
!!! CTCATTTTCTTTTTTCATTA+AGG + Chr4:43242754-43242773 MsG0480020550.01.T01:intron 20.0%
!!! TTTCATGTTTTTATGAAATC+TGG + Chr4:43241408-43241427 MsG0480020550.01.T01:intron 20.0%
! ATTTGTATCTATGCATTGTT+TGG + Chr4:43242930-43242949 MsG0480020550.01.T01:intron 25.0%
! TAAAGAGAAATAAACAACCT+TGG + Chr4:43242731-43242750 MsG0480020550.01.T01:intron 25.0%
! TAACAGATACTTCATTATCT+GGG - Chr4:43242641-43242660 None:intergenic 25.0%
! TATATGATACACTAATTGTG+AGG + Chr4:43243304-43243323 MsG0480020550.01.T01:three_prime_UTR 25.0%
! TTAACAGATACTTCATTATC+TGG - Chr4:43242642-43242661 None:intergenic 25.0%
! TTAATATCAAGAGTCAGTTA+AGG - Chr4:43242158-43242177 None:intergenic 25.0%
! TTACTGTAAATAGTATCCAA+AGG - Chr4:43241299-43241318 None:intergenic 25.0%
! TTTCATTAAGGTATATGCAA+AGG + Chr4:43242766-43242785 MsG0480020550.01.T01:intron 25.0%
!! ATTCAAAAATCTAGAGTTAC+AGG - Chr4:43243384-43243403 None:intergenic 25.0%
!! CTGTTTATTCTTGTGATTTT+AGG + Chr4:43243085-43243104 MsG0480020550.01.T01:intron 25.0%
!! TTTTTATGAAATCTGGTTGA+TGG + Chr4:43241415-43241434 MsG0480020550.01.T01:intron 25.0%
!!! TTATTCTTGTGATTTTAGGT+TGG + Chr4:43243089-43243108 MsG0480020550.01.T01:intron 25.0%
AAAATAAAAAACCTACCACC+GGG - Chr4:43241337-43241356 None:intergenic 30.0%
AAATGGACACATCTTTAATG+TGG + Chr4:43242611-43242630 MsG0480020550.01.T01:CDS 30.0%
AATGGACACATCTTTAATGT+GGG + Chr4:43242612-43242631 MsG0480020550.01.T01:CDS 30.0%
AGCAGAAGATATATGACTAT+AGG - Chr4:43243354-43243373 None:intergenic 30.0%
ATGGTTTCAATTTGACGTTT+CGG + Chr4:43242086-43242105 MsG0480020550.01.T01:intron 30.0%
ATGTCTGATGTTGATATTGA+AGG - Chr4:43243153-43243172 None:intergenic 30.0%
CAAAATAAAAAACCTACCAC+CGG - Chr4:43241338-43241357 None:intergenic 30.0%
CTATATCAAAGATGCAATTG+AGG + Chr4:43242479-43242498 MsG0480020550.01.T01:CDS 30.0%
GATATAGAGAAAAGTTCTCT+GGG - Chr4:43242466-43242485 None:intergenic 30.0%
TACAGCAAGAATCTCTTTAT+GGG + Chr4:43241556-43241575 MsG0480020550.01.T01:intron 30.0%
TCTTTGAGCTTGTAATATTG+AGG - Chr4:43241829-43241848 None:intergenic 30.0%
TGAAAAAAGAAAATGAGCCA+AGG - Chr4:43242751-43242770 None:intergenic 30.0%
TGAAACAAGCTAAAACTCTT+GGG - Chr4:43242298-43242317 None:intergenic 30.0%
TGATATAGAGAAAAGTTCTC+TGG - Chr4:43242467-43242486 None:intergenic 30.0%
TGTCTGATGTTGATATTGAA+GGG - Chr4:43243152-43243171 None:intergenic 30.0%
TTGAAGCTTCAACAAAATCA+CGG - Chr4:43242989-43243008 None:intergenic 30.0%
! AAGCTTTGTGAAAAAAACAG+CGG - Chr4:43242387-43242406 None:intergenic 30.0%
AAAATCACAATGTGCAACAG+TGG - Chr4:43243031-43243050 None:intergenic 35.0%
AACACAAATTTGCATCATGC+AGG + Chr4:43241801-43241820 MsG0480020550.01.T01:intron 35.0%
AAGGTTATGATGACAGTGAT+AGG + Chr4:43242852-43242871 MsG0480020550.01.T01:CDS 35.0%
ACTAGCTGAGCTTATGATAA+AGG + Chr4:43242665-43242684 MsG0480020550.01.T01:CDS 35.0%
AGTTCATCAAGAGATGTCTT+TGG - Chr4:43243118-43243137 None:intergenic 35.0%
ATTTGTCAGATTGTCTCTCA+TGG - Chr4:43243283-43243302 None:intergenic 35.0%
CATTAAGGTATATGCAAAGG+TGG + Chr4:43242769-43242788 MsG0480020550.01.T01:intron 35.0%
CGTCAAATTGAAACCATGTA+AGG - Chr4:43242083-43242102 None:intergenic 35.0%
CTATTGTGAGACCTTATAAC+TGG + Chr4:43242219-43242238 MsG0480020550.01.T01:CDS 35.0%
CTGAAACAAGCTAAAACTCT+TGG - Chr4:43242299-43242318 None:intergenic 35.0%
GGCTCATTTATGGTAAACAA+AGG + Chr4:43241926-43241945 MsG0480020550.01.T01:intron 35.0%
GTACAGCAAGAATCTCTTTA+TGG + Chr4:43241555-43241574 MsG0480020550.01.T01:intron 35.0%
TAAATCTATAGCTGAGCATG+CGG + Chr4:43242178-43242197 MsG0480020550.01.T01:intron 35.0%
TATGCTATCATGTAACATGC+AGG + Chr4:43242572-43242591 MsG0480020550.01.T01:intron 35.0%
TCATCTGATGAAACTCGATA+CGG - Chr4:43241077-43241096 None:intergenic 35.0%
TGAACTGGACCAAAAATACA+AGG - Chr4:43241862-43241881 None:intergenic 35.0%
! GATGTGAGTCCTTGTATTTT+TGG + Chr4:43241850-43241869 MsG0480020550.01.T01:CDS 35.0%
! GTGAGTTCAGAAGTTTTCTA+TGG + Chr4:43242827-43242846 MsG0480020550.01.T01:CDS 35.0%
! TCAGAAGTTTTCTATGGCAA+AGG + Chr4:43242833-43242852 MsG0480020550.01.T01:CDS 35.0%
!! GAGATGATTGATTTTCTCAG+AGG - Chr4:43241028-43241047 None:intergenic 35.0%
!! TATGGCTTTGTGAGATGTTT+CGG - Chr4:43240992-43241011 None:intergenic 35.0%
!!! ATTTTTCGGTGTCATGATGT+TGG + Chr4:43241683-43241702 MsG0480020550.01.T01:intron 35.0%
!!! CGGTGGTAGGTTTTTTATTT+TGG + Chr4:43241336-43241355 MsG0480020550.01.T01:intron 35.0%
AGAGGAGACATCAATGACTA+TGG - Chr4:43241010-43241029 None:intergenic 40.0%
ATCTCAATATGCATGATCGG+CGG + Chr4:43240925-43240944 MsG0480020550.01.T01:CDS 40.0%
ATGACAGACAGGCTCATTTA+TGG + Chr4:43241916-43241935 MsG0480020550.01.T01:CDS 40.0%
ATGTGTCCATTTGCTCTATC+AGG - Chr4:43242603-43242622 None:intergenic 40.0%
CAACACACACAAAAGCTTCA+TGG + Chr4:43240867-43240886 MsG0480020550.01.T01:exon 40.0%
CCGATCATGCATATTGAGAT+CGG - Chr4:43240925-43240944 None:intergenic 40.0%
CCGATCTCAATATGCATGAT+CGG + Chr4:43240922-43240941 MsG0480020550.01.T01:CDS 40.0%
CCTTGATAAGTCTCATCCTT+GGG + Chr4:43241047-43241066 MsG0480020550.01.T01:CDS 40.0%
CTTGGTCCAATCCAGTTATA+AGG - Chr4:43242233-43242252 None:intergenic 40.0%
GACATCTCTTGATGAACTGT+TGG + Chr4:43243120-43243139 MsG0480020550.01.T01:CDS 40.0%
GACCATCTCTGTTTATGAAC+TGG - Chr4:43241877-43241896 None:intergenic 40.0%
GATAACCCTGATAGAGCAAA+TGG + Chr4:43242594-43242613 MsG0480020550.01.T01:CDS 40.0%
GTCCAGTTCATAAACAGAGA+TGG + Chr4:43241872-43241891 MsG0480020550.01.T01:CDS 40.0%
GTGAGACCTTATAACTGGAT+TGG + Chr4:43242224-43242243 MsG0480020550.01.T01:CDS 40.0%
TAATTTCATCGATGCGATCC+CGG + Chr4:43241316-43241335 MsG0480020550.01.T01:CDS 40.0%
TCAATGTCAGTATGTGTGTC+TGG - Chr4:43242000-43242019 None:intergenic 40.0%
TCCTTGATAAGTCTCATCCT+TGG + Chr4:43241046-43241065 MsG0480020550.01.T01:CDS 40.0%
TGTACCTTTCTATACTCCTC+AGG - Chr4:43241540-43241559 None:intergenic 40.0%
TGTGTCCATTTGCTCTATCA+GGG - Chr4:43242602-43242621 None:intergenic 40.0%
TGTTGGACACTTACATGTGT+CGG + Chr4:43241700-43241719 MsG0480020550.01.T01:intron 40.0%
TTTCTACGTGTGAGGTCTTT+GGG + Chr4:43241493-43241512 MsG0480020550.01.T01:CDS 40.0%
! AAGCTTTGACGAGAGTTTCA+AGG - Chr4:43241119-43241138 None:intergenic 40.0%
! AGCAACTCTGCAAGTTGAAT+TGG + Chr4:43243216-43243235 MsG0480020550.01.T01:exon 40.0%
! TAACTGGATTGGACCAAGAA+TGG + Chr4:43242235-43242254 MsG0480020550.01.T01:CDS 40.0%
! TGGTGATGATTGTCATGTCA+GGG - Chr4:43242883-43242902 None:intergenic 40.0%
! TGTTTCGGACATCAGCTTTT+CGG - Chr4:43240977-43240996 None:intergenic 40.0%
! TTTTCTACGTGTGAGGTCTT+TGG + Chr4:43241492-43241511 MsG0480020550.01.T01:CDS 40.0%
!! ATCCAGAGTTGATAGACTAG+AGG - Chr4:43242807-43242826 None:intergenic 40.0%
!! GATTCACTTTTCTACGTGTG+AGG + Chr4:43241485-43241504 MsG0480020550.01.T01:CDS 40.0%
!! TCCAGAGTTGATAGACTAGA+GGG - Chr4:43242806-43242825 None:intergenic 40.0%
AAGGTATATGCAAAGGTGGC+TGG + Chr4:43242773-43242792 MsG0480020550.01.T01:intron 45.0%
ATGGATCGAGTGAACCTTGA+TGG + Chr4:43240886-43240905 MsG0480020550.01.T01:CDS 45.0%
CATATTGAGATCGGCGTGAT+TGG - Chr4:43240916-43240935 None:intergenic 45.0%
CCACCATCAACAAGTTTGAG+AGG - Chr4:43242438-43242457 None:intergenic 45.0%
CCAGGAATGAAGTCCATTCT+TGG - Chr4:43242251-43242270 None:intergenic 45.0%
CCCAAGGATGAGACTTATCA+AGG - Chr4:43241050-43241069 None:intergenic 45.0%
CGTGAACAAGAAACAGAAGC+AGG - Chr4:43242339-43242358 None:intergenic 45.0%
CTGACATGACAATCATCACC+AGG + Chr4:43242882-43242901 MsG0480020550.01.T01:CDS 45.0%
TCAGTGTCAGACACCTTACA+TGG + Chr4:43242067-43242086 MsG0480020550.01.T01:intron 45.0%
TCCCTCTAGTCTATCAACTC+TGG + Chr4:43242802-43242821 MsG0480020550.01.T01:CDS 45.0%
TCTTGCTGCGATTTGTACAC+CGG + Chr4:43241256-43241275 MsG0480020550.01.T01:CDS 45.0%
! AATGGACTTCATTCCTGGTG+TGG + Chr4:43242253-43242272 MsG0480020550.01.T01:CDS 45.0%
! AATTGGTAGCTTTCTGCCTG+AGG + Chr4:43241521-43241540 MsG0480020550.01.T01:CDS 45.0%
! CCAAGAATGGACTTCATTCC+TGG + Chr4:43242248-43242267 MsG0480020550.01.T01:CDS 45.0%
! CTGGTGATGATTGTCATGTC+AGG - Chr4:43242884-43242903 None:intergenic 45.0%
! GAGGTCTTTGGGAAGACAAT+TGG + Chr4:43241504-43241523 MsG0480020550.01.T01:CDS 45.0%
! TCTGCCTGAGGAGTATAGAA+AGG + Chr4:43241533-43241552 MsG0480020550.01.T01:CDS 45.0%
!! AGAGTTGATAGACTAGAGGG+AGG - Chr4:43242803-43242822 None:intergenic 45.0%
!! CCTCTCAAACTTGTTGATGG+TGG + Chr4:43242435-43242454 MsG0480020550.01.T01:CDS 45.0%
!! GAGCCTCTCAAACTTGTTGA+TGG + Chr4:43242432-43242451 MsG0480020550.01.T01:CDS 45.0%
!! TGCAGAGTTGCTCAAGTTGA+AGG - Chr4:43243208-43243227 None:intergenic 45.0%
ACAATCATCACCAGGCAGCT+TGG + Chr4:43242890-43242909 MsG0480020550.01.T01:CDS 50.0%
ACTCTTGGGACACCATCACT+TGG - Chr4:43242284-43242303 None:intergenic 50.0%
ATAGCTGAGCATGCGGAGAA+TGG + Chr4:43242185-43242204 MsG0480020550.01.T01:intron 50.0%
GACTTCATTCCTGGTGTGGA+TGG + Chr4:43242257-43242276 MsG0480020550.01.T01:CDS 50.0%
GGATTATAACACGCGGCCTT+TGG + Chr4:43241280-43241299 MsG0480020550.01.T01:CDS 50.0%
GTGCAAAGCAGATGACAGAC+AGG + Chr4:43241905-43241924 MsG0480020550.01.T01:CDS 50.0%
TCAATATGCATGATCGGCGG+TGG + Chr4:43240928-43240947 MsG0480020550.01.T01:CDS 50.0%
TGACAGAATACCAAGCTGCC+TGG - Chr4:43242903-43242922 None:intergenic 50.0%
! AACTCGATACGGTTAGCCCA+AGG - Chr4:43241066-43241085 None:intergenic 50.0%
!! GCGTGATTGGCTTTCCATCA+AGG - Chr4:43240903-43240922 None:intergenic 50.0%
!! TTGCTCTAGAATCTCCTGCG+TGG + Chr4:43242408-43242427 MsG0480020550.01.T01:intron 50.0%
ATATGCATGATCGGCGGTGG+AGG + Chr4:43240931-43240950 MsG0480020550.01.T01:CDS 55.0%
ATCGGCGGTGGAGGATTCAT+CGG + Chr4:43240940-43240959 MsG0480020550.01.T01:CDS 55.0%
GGTGTGGATGGTCCAAGTGA+TGG + Chr4:43242269-43242288 MsG0480020550.01.T01:CDS 55.0%
TCACTTGGACCATCCACACC+AGG - Chr4:43242269-43242288 None:intergenic 55.0%
TGCTGCGATTTGTACACCGG+CGG + Chr4:43241259-43241278 MsG0480020550.01.T01:CDS 55.0%
TTTCATCGATGCGATCCCGG+TGG + Chr4:43241319-43241338 MsG0480020550.01.T01:CDS 55.0%
! CGGACATCAGCTTTTCGGTG+AGG - Chr4:43240972-43240991 None:intergenic 55.0%
!! CACCGGCGGATTATAACACG+CGG + Chr4:43241273-43241292 MsG0480020550.01.T01:CDS 55.0%
ATCGATGCGATCCCGGTGGT+AGG + Chr4:43241323-43241342 MsG0480020550.01.T01:intron 60.0%
GGCCGCGTGTTATAATCCGC+CGG - Chr4:43241278-43241297 None:intergenic 60.0%
GTTTGAGAGGCTCGCCACGC+AGG - Chr4:43242425-43242444 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 43240841 43243424 43240841 ID=MsG0480020550.01;Name=MsG0480020550.01
Chr4 mRNA 43240841 43243424 43240841 ID=MsG0480020550.01.T01;Parent=MsG0480020550.01;Name=MsG0480020550.01.T01;_AED=0.47;_eAED=0.47;_QI=45|1|1|1|1|1|9|208|381
Chr4 exon 43240841 43241146 43240841 ID=MsG0480020550.01.T01:exon:15622;Parent=MsG0480020550.01.T01
Chr4 exon 43241248 43241340 43241248 ID=MsG0480020550.01.T01:exon:15623;Parent=MsG0480020550.01.T01
Chr4 exon 43241453 43241554 43241453 ID=MsG0480020550.01.T01:exon:15624;Parent=MsG0480020550.01.T01
Chr4 exon 43241823 43241937 43241823 ID=MsG0480020550.01.T01:exon:15625;Parent=MsG0480020550.01.T01
Chr4 exon 43242189 43242322 43242189 ID=MsG0480020550.01.T01:exon:15626;Parent=MsG0480020550.01.T01
Chr4 exon 43242417 43242518 43242417 ID=MsG0480020550.01.T01:exon:15627;Parent=MsG0480020550.01.T01
Chr4 exon 43242594 43242686 43242594 ID=MsG0480020550.01.T01:exon:15628;Parent=MsG0480020550.01.T01
Chr4 exon 43242776 43242911 43242776 ID=MsG0480020550.01.T01:exon:15629;Parent=MsG0480020550.01.T01
Chr4 exon 43243107 43243424 43243107 ID=MsG0480020550.01.T01:exon:15630;Parent=MsG0480020550.01.T01
Chr4 five_prime_UTR 43240841 43240885 43240841 ID=MsG0480020550.01.T01:five_prime_utr;Parent=MsG0480020550.01.T01
Chr4 CDS 43240886 43241146 43240886 ID=MsG0480020550.01.T01:cds;Parent=MsG0480020550.01.T01
Chr4 CDS 43241248 43241340 43241248 ID=MsG0480020550.01.T01:cds;Parent=MsG0480020550.01.T01
Chr4 CDS 43241453 43241554 43241453 ID=MsG0480020550.01.T01:cds;Parent=MsG0480020550.01.T01
Chr4 CDS 43241823 43241937 43241823 ID=MsG0480020550.01.T01:cds;Parent=MsG0480020550.01.T01
Chr4 CDS 43242189 43242322 43242189 ID=MsG0480020550.01.T01:cds;Parent=MsG0480020550.01.T01
Chr4 CDS 43242417 43242518 43242417 ID=MsG0480020550.01.T01:cds;Parent=MsG0480020550.01.T01
Chr4 CDS 43242594 43242686 43242594 ID=MsG0480020550.01.T01:cds;Parent=MsG0480020550.01.T01
Chr4 CDS 43242776 43242911 43242776 ID=MsG0480020550.01.T01:cds;Parent=MsG0480020550.01.T01
Chr4 CDS 43243107 43243216 43243107 ID=MsG0480020550.01.T01:cds;Parent=MsG0480020550.01.T01
Chr4 three_prime_UTR 43243217 43243424 43243217 ID=MsG0480020550.01.T01:three_prime_utr;Parent=MsG0480020550.01.T01
Gene Sequence

>MsG0480020550.01.T01

ATGGATCGAGTGAACCTTGATGGAAAGCCAATCACGCCGATCTCAATATGCATGATCGGCGGTGGAGGATTCATCGGATCACACCTCACCGAAAAGCTGATGTCCGAAACATCTCACAAAGCCATAGTCATTGATGTCTCCTCTGAGAAAATCAATCATCTCCTTGATAAGTCTCATCCTTGGGCTAACCGTATCGAGTTTCATCAGATGAATATCAAGAACGATTCTCGCCTTGAAACTCTCGTCAAAGCTTCTGATCTCACTATTAATCTTGCTGCGATTTGTACACCGGCGGATTATAACACGCGGCCTTTGGATACTATTTACAGTAATTTCATCGATGCGATCCCGGTGATTAAATTTTGTACTGAGAACAATAAGCGTTTGATTCACTTTTCTACGTGTGAGGTCTTTGGGAAGACAATTGGTAGCTTTCTGCCTGAGGAGTATAGAAAGGAACCTCAATATTACAAGCTCAAAGAAGATGTGAGTCCTTGTATTTTTGGTCCAGTTCATAAACAGAGATGGTCTTATGCATGTGCAAAGCAGATGACAGACAGGCTCATTTATGCTGAGCATGCGGAGAATGGACTCAAGTTCACTATTGTGAGACCTTATAACTGGATTGGACCAAGAATGGACTTCATTCCTGGTGTGGATGGTCCAAGTGATGGTGTCCCAAGAGTTTTAGCTTGTTTCAGTAATAATCTCCTGCGTGGCGAGCCTCTCAAACTTGTTGATGGTGGACATTCCCAGAGAACTTTTCTCTATATCAAAGATGCAATTGAGGCTGTTTTGTTAATGATTGATAACCCTGATAGAGCAAATGGACACATCTTTAATGTGGGAAACCCAGATAATGAAGTATCTGTTAAGCAACTAGCTGAGCTTATGATAAAGGTATATGCAAAGGTGGCTGGTGTACCTCCCTCTAGTCTATCAACTCTGGATGTGAGTTCAGAAGTTTTCTATGGCAAAGGTTATGATGACAGTGATAGGCGTATCCCTGACATGACAATCATCACCAGGCAGCTTGGTTGGAAGCCAAAGACATCTCTTGATGAACTGTTGGATTCTACCCTTCAATATCAACATCAGACATATTCTCATGCTATCAAGAAAGAACTCTCAAAACCTTCAACTTGA

Protein sequence

>MsG0480020550.01.T01

MDRVNLDGKPITPISICMIGGGGFIGSHLTEKLMSETSHKAIVIDVSSEKINHLLDKSHPWANRIEFHQMNIKNDSRLETLVKASDLTINLAAICTPADYNTRPLDTIYSNFIDAIPVIKFCTENNKRLIHFSTCEVFGKTIGSFLPEEYRKEPQYYKLKEDVSPCIFGPVHKQRWSYACAKQMTDRLIYAEHAENGLKFTIVRPYNWIGPRMDFIPGVDGPSDGVPRVLACFSNNLLRGEPLKLVDGGHSQRTFLYIKDAIEAVLLMIDNPDRANGHIFNVGNPDNEVSVKQLAELMIKVYAKVAGVPPSSLSTLDVSSEVFYGKGYDDSDRRIPDMTIITRQLGWKPKTSLDELLDSTLQYQHQTYSHAIKKELSKPST*