AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041618.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041618.01.T01 MTR_7g114550 89.441 322 34 0 1 322 7 328 0.0 614
MsG0780041618.01.T01 MTR_7g114560 89.441 322 34 0 1 322 7 328 0.0 608
MsG0780041618.01.T01 MTR_7g114490 83.125 320 54 0 1 320 7 326 0.0 569
MsG0780041618.01.T01 MTR_5g076700 80.997 321 60 1 1 320 7 327 0.0 549
MsG0780041618.01.T01 MTR_7g114520 76.543 324 74 2 1 322 8 331 0.0 533
MsG0780041618.01.T01 MTR_7g114470 77.329 322 71 2 1 320 8 329 0.0 531
MsG0780041618.01.T01 MTR_1g040175 54.012 324 144 4 1 322 6 326 1.31e-127 372
MsG0780041618.01.T01 MTR_1g040215 54.012 324 144 4 1 322 6 326 3.18e-125 367
MsG0780041618.01.T01 MTR_1g040315 56.467 317 131 4 1 316 6 316 1.36e-122 358
MsG0780041618.01.T01 MTR_1g081660 56.790 324 135 4 1 322 15 335 2.93e-120 353
MsG0780041618.01.T01 MTR_1g040195 53.988 326 116 5 1 322 6 301 1.14e-119 352
MsG0780041618.01.T01 MTR_1g040320 52.941 323 113 5 1 322 6 290 5.43e-118 347
MsG0780041618.01.T01 MTR_7g114510 71.038 183 52 1 141 322 7 189 1.02e-93 281
MsG0780041618.01.T01 MTR_7g114500 81.507 146 27 0 1 146 7 152 1.16e-85 254
MsG0780041618.01.T01 MTR_3g051790 77.465 142 32 0 1 142 10 151 1.14e-76 233
MsG0780041618.01.T01 MTR_0502s0010 52.790 233 97 5 95 321 1 226 7.49e-74 228
MsG0780041618.01.T01 MTR_0042s0230 64.085 142 51 0 1 142 6 147 6.52e-67 207
MsG0780041618.01.T01 MTR_7g114420 63.580 162 31 2 160 320 1 135 6.00e-63 201
MsG0780041618.01.T01 MTR_8g039950 66.667 123 41 0 1 123 6 128 1.52e-59 187
MsG0780041618.01.T01 MTR_8g096530 31.498 327 210 7 2 322 5 323 8.69e-57 190
MsG0780041618.01.T01 MTR_3g098980 31.677 322 211 6 4 322 14 329 2.37e-53 181
MsG0780041618.01.T01 MTR_7g027175 31.056 322 206 7 8 322 20 332 7.93e-51 174
MsG0780041618.01.T01 MTR_0042s0190 47.904 167 78 4 160 322 1 162 7.20e-42 147
MsG0780041618.01.T01 MTR_3g112180 32.024 331 191 11 7 320 14 327 4.50e-40 146
MsG0780041618.01.T01 MTR_4g055170 29.755 326 207 8 11 322 19 336 4.79e-39 144
MsG0780041618.01.T01 MTR_1g053315 31.922 307 191 11 12 303 26 329 1.16e-37 140
MsG0780041618.01.T01 MTR_7g110610 29.179 329 158 10 3 316 4 272 4.07e-36 134
MsG0780041618.01.T01 MTR_2g105330 29.653 317 208 8 11 321 10 317 2.77e-33 127
MsG0780041618.01.T01 MTR_4g007540 27.835 291 199 5 36 321 34 318 3.80e-32 124
MsG0780041618.01.T01 MTR_2g064495 29.338 317 209 8 11 321 10 317 5.79e-32 124
MsG0780041618.01.T01 MTR_3g465930 28.525 305 203 7 11 303 17 318 1.09e-29 118
MsG0780041618.01.T01 MTR_8g075610 27.946 297 201 6 30 321 19 307 1.97e-29 117
MsG0780041618.01.T01 MTR_3g071320 28.182 330 215 8 3 317 4 326 3.90e-28 113
MsG0780041618.01.T01 MTR_3g465910 29.934 304 197 10 11 303 17 315 8.53e-27 110
MsG0780041618.01.T01 MTR_2g015430 28.671 286 190 8 25 303 25 303 2.12e-26 108
MsG0780041618.01.T01 MTR_3g465990 28.846 312 190 12 11 303 17 315 6.64e-25 104
MsG0780041618.01.T01 MTR_7g114417 81.818 55 9 1 84 137 29 83 1.18e-23 93.2
MsG0780041618.01.T01 MTR_7g114417 88.889 36 4 0 1 36 7 42 1.88e-14 68.2
MsG0780041618.01.T01 MTR_3g465980 29.739 306 195 10 11 303 17 315 1.65e-23 100
MsG0780041618.01.T01 MTR_4g127650 25.301 332 226 10 3 322 11 332 2.68e-23 100
MsG0780041618.01.T01 MTR_7g084910 25.597 293 204 7 8 291 21 308 4.79e-23 99.4
MsG0780041618.01.T01 MTR_7g085930 26.708 322 206 13 11 311 13 325 1.21e-22 98.6
MsG0780041618.01.T01 MTR_5g090810 26.100 341 223 11 2 322 8 339 2.13e-22 97.8
MsG0780041618.01.T01 MTR_7g084940 27.723 202 141 4 8 208 20 217 2.21e-22 97.4
MsG0780041618.01.T01 MTR_3g049150 26.524 328 211 13 12 322 10 324 3.58e-22 97.1
MsG0780041618.01.T01 MTR_3g026950 25.826 333 211 12 12 322 10 328 4.68e-22 96.7
MsG0780041618.01.T01 MTR_6g053810 28.058 278 179 12 58 322 70 339 6.69e-22 96.3
MsG0780041618.01.T01 MTR_5g090830 26.393 341 222 11 2 322 8 339 6.90e-22 96.3
MsG0780041618.01.T01 MTR_5g090880 27.206 272 171 9 56 308 64 327 1.17e-21 95.5
MsG0780041618.01.T01 MTR_3g465880 26.266 316 198 9 11 303 17 320 1.28e-21 95.5
MsG0780041618.01.T01 MTR_7g085990 28.986 207 137 6 10 210 8 210 2.18e-21 94.7
MsG0780041618.01.T01 MTR_4g013050 31.707 164 102 4 12 173 12 167 2.75e-21 94.0
MsG0780041618.01.T01 MTR_3g465950 38.194 144 82 3 54 192 63 204 1.05e-20 92.8
MsG0780041618.01.T01 MTR_7g086000 25.610 328 201 15 12 313 12 322 1.52e-20 92.4
MsG0780041618.01.T01 MTR_7g056087 26.906 223 140 6 1 211 1 212 5.71e-20 90.5
MsG0780041618.01.T01 MTR_3g465870 31.937 191 118 5 11 192 19 206 4.17e-19 87.8
MsG0780041618.01.T01 MTR_0042s0190 45.918 98 51 2 226 322 1 97 4.46e-19 85.1
MsG0780041618.01.T01 MTR_4g097090 23.548 310 209 9 30 322 34 332 1.84e-18 86.3
MsG0780041618.01.T01 MTR_5g026320 25.714 315 208 14 2 306 16 314 1.90e-18 86.3
MsG0780041618.01.T01 MTR_5g084870 30.814 172 101 6 10 174 9 169 8.84e-18 84.0
MsG0780041618.01.T01 MTR_8g041770 24.000 325 210 10 7 317 20 321 1.62e-17 83.2
MsG0780041618.01.T01 MTR_3g450690 26.056 284 179 9 59 322 72 344 2.15e-17 83.2
MsG0780041618.01.T01 MTR_3g450710 24.839 310 197 11 37 322 43 340 3.21e-17 82.4
MsG0780041618.01.T01 MTR_4g088765 48.529 68 35 0 1 68 6 73 6.39e-17 75.9
MsG0780041618.01.T01 MTR_8g079950 29.480 173 102 7 10 174 9 169 7.06e-17 81.3
MsG0780041618.01.T01 MTR_8g079970 30.233 172 102 6 10 174 9 169 2.61e-16 79.7
MsG0780041618.01.T01 MTR_5g084850 30.233 172 102 6 10 174 9 169 5.53e-16 78.6
MsG0780041618.01.T01 MTR_4g022720 25.263 285 183 10 18 290 25 291 2.03e-15 77.0
MsG0780041618.01.T01 MTR_1g094790 28.962 183 109 6 10 182 9 180 1.12e-14 74.7
MsG0780041618.01.T01 MTR_8g467590 29.189 185 115 8 10 187 9 184 5.41e-14 72.8
MsG0780041618.01.T01 MTR_8g467580 24.214 318 204 13 10 311 9 305 8.64e-14 72.0
MsG0780041618.01.T01 MTR_4g022825 31.792 173 95 7 18 182 25 182 8.95e-14 72.0
MsG0780041618.01.T01 MTR_3g088420 23.810 315 200 11 18 317 25 314 9.66e-13 68.9
MsG0780041618.01.T01 MTR_6g016815 28.571 133 85 5 54 179 64 193 9.95e-12 65.9
MsG0780041618.01.T01 MTR_2g036780 25.410 244 154 6 43 286 50 265 1.44e-11 65.5
MsG0780041618.01.T01 MTR_7g026860 28.804 184 106 8 18 191 25 193 1.79e-11 65.1
MsG0780041618.01.T01 MTR_3g100150 27.660 141 99 1 43 183 49 186 3.54e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041618.01.T01 AT5G17540 50.309 324 156 4 2 322 7 328 1.17e-105 317
MsG0780041618.01.T01 AT3G03480 50.617 324 152 6 2 322 17 335 1.18e-100 304
MsG0780041618.01.T01 AT3G48720 32.000 325 211 7 2 322 7 325 1.51e-55 187
MsG0780041618.01.T01 AT5G63560 33.639 327 195 8 4 322 9 321 3.91e-54 183
MsG0780041618.01.T01 AT5G41040 31.077 325 212 6 4 322 17 335 6.66e-51 175
MsG0780041618.01.T01 AT5G41040 31.077 325 212 6 4 322 33 351 8.15e-51 175
MsG0780041618.01.T01 AT1G27620 32.822 326 195 11 8 322 13 325 5.99e-42 151
MsG0780041618.01.T01 AT3G62160 29.968 317 198 9 2 312 3 301 3.34e-34 130
MsG0780041618.01.T01 AT5G48930 27.900 319 212 8 11 321 10 318 2.50e-32 125
MsG0780041618.01.T01 AT1G03390 30.838 334 199 13 8 320 21 343 1.00e-31 124
MsG0780041618.01.T01 AT5G57840 30.341 323 203 10 4 315 3 314 1.53e-30 120
MsG0780041618.01.T01 AT2G19070 26.935 323 215 8 12 320 12 327 1.06e-28 115
MsG0780041618.01.T01 AT1G28680 30.149 335 211 12 1 322 1 325 8.58e-28 112
MsG0780041618.01.T01 AT1G28680 30.149 335 211 12 1 322 1 325 1.71e-27 112
MsG0780041618.01.T01 AT5G07080 29.070 344 202 11 2 322 12 336 2.00e-27 112
MsG0780041618.01.T01 AT3G47170 25.926 351 219 12 2 322 10 349 7.34e-26 107
MsG0780041618.01.T01 AT2G40230 28.571 329 195 14 11 317 12 322 1.26e-25 106
MsG0780041618.01.T01 AT1G31490 26.603 312 197 11 1 299 3 295 2.21e-24 103
MsG0780041618.01.T01 AT1G65450 26.994 326 217 10 11 322 25 343 2.27e-24 103
MsG0780041618.01.T01 AT2G25150 27.760 317 189 12 10 305 19 316 3.68e-22 97.1
MsG0780041618.01.T01 AT2G23510 26.875 320 198 12 4 305 13 314 5.43e-21 93.6
MsG0780041618.01.T01 AT1G32910 27.483 302 183 11 38 322 46 328 5.88e-20 90.5
MsG0780041618.01.T01 AT3G26040 23.780 328 194 13 10 315 9 302 1.07e-17 84.0
MsG0780041618.01.T01 AT1G78990 25.763 295 196 8 37 322 45 325 2.54e-17 82.8
MsG0780041618.01.T01 AT5G16410 25.938 320 205 12 2 308 34 334 2.96e-17 82.8
MsG0780041618.01.T01 AT5G47980 29.478 268 153 11 8 261 9 254 1.13e-16 80.9
MsG0780041618.01.T01 AT4G15390 26.733 303 181 14 4 290 8 285 2.82e-16 79.7
MsG0780041618.01.T01 AT4G15390 26.733 303 181 14 4 290 8 285 2.82e-16 79.7
MsG0780041618.01.T01 AT1G24430 28.870 239 140 10 10 242 11 225 3.15e-16 79.3
MsG0780041618.01.T01 AT1G24420 29.771 262 156 10 10 262 11 253 1.33e-14 74.7
MsG0780041618.01.T01 AT1G24420 29.771 262 156 10 10 262 11 253 1.33e-14 74.7
MsG0780041618.01.T01 AT3G30280 28.571 182 116 7 4 179 6 179 1.74e-14 74.3
MsG0780041618.01.T01 AT5G47950 28.889 180 113 6 4 179 6 174 1.70e-13 71.2
MsG0780041618.01.T01 AT5G23970 28.235 170 112 4 10 179 9 168 5.75e-13 69.7
MsG0780041618.01.T01 AT2G39980 29.319 191 125 4 56 245 59 240 1.01e-12 68.9
MsG0780041618.01.T01 AT5G42830 25.231 325 205 13 14 320 27 331 1.47e-11 65.5
MsG0780041618.01.T01 AT5G07860 22.951 305 208 9 31 322 45 335 1.61e-11 65.5
MsG0780041618.01.T01 AT5G67150 24.534 322 204 13 18 320 30 331 1.78e-11 65.1
MsG0780041618.01.T01 AT4G31910 25.000 192 131 6 41 228 46 228 2.11e-11 65.1

Find 133 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTCCTTAATGGTATT+TGG 0.143670 7:+93138477 None:intergenic
AGGCTCTTCGAAGTGAATTT+TGG 0.201766 7:-93138010 MsG0780041618.01.T01:three_prime_UTR
GCATGTCTAAGAACCTTAAT+AGG 0.234481 7:+93140833 None:intergenic
CACTCGGTGTAAGATGATTT+TGG 0.236072 7:+93137812 None:intergenic
AGCAGTATCTTCTTCCTTAA+TGG 0.250041 7:+93138470 None:intergenic
GCATTCTGTGGCCGATCTTA+TGG 0.264577 7:-93138098 MsG0780041618.01.T01:three_prime_UTR
GGCCGATCTTATGGTTATTA+AGG 0.274324 7:-93138089 MsG0780041618.01.T01:three_prime_UTR
CCATTCAACCTGTGTGGAAT+AGG 0.307886 7:-93138569 MsG0780041618.01.T01:CDS
TCTCCGTTTATATTCTTGTA+TGG 0.307915 7:+93137916 None:intergenic
GGATGGGGTGAAGGGGTGTA+TGG 0.324961 7:-93137989 MsG0780041618.01.T01:three_prime_UTR
CATTGTATGGTTCCAATTCA+TGG 0.325987 7:+93138662 None:intergenic
TCCAGGCTCAGAACAAATTA+TGG 0.326975 7:-93140618 MsG0780041618.01.T01:CDS
TCGGCACTTGTTGGATATTA+CGG 0.332866 7:-93138237 MsG0780041618.01.T01:CDS
ATCCATTTGCGGGAAGGGTT+AGG 0.334559 7:-93140784 MsG0780041618.01.T01:CDS
TCTTCAGAGGGCAAACAAAT+TGG 0.336728 7:+93137877 None:intergenic
CATAGCTGCTCTTCGTCTCT+TGG 0.341686 7:-93138409 MsG0780041618.01.T01:CDS
GAACATCATATAGGAGTTCT+TGG 0.342842 7:+93140639 None:intergenic
TGGGGTGAAGGGGTGTATGG+TGG 0.351268 7:-93137986 MsG0780041618.01.T01:three_prime_UTR
GGGTCTTTCTCTGCCATTGA+TGG 0.353609 7:+93140854 None:intergenic
CCTGCAGTGGTGACGGCCGC+CGG 0.366152 7:+93138198 None:intergenic
ACAAACTACAACAAACTATA+AGG 0.374547 7:+93137768 None:intergenic
ATTCTTGTATGGGACGATAT+AGG 0.378210 7:+93137927 None:intergenic
CAACTCCACTGCATAACAAA+TGG 0.379413 7:+93138159 None:intergenic
CATGACTGCATGGGCAGAAA+TGG 0.383185 7:-93138613 MsG0780041618.01.T01:CDS
GGCAGAGAAAGACCCTATTA+AGG 0.385270 7:-93140846 MsG0780041618.01.T01:CDS
TCCCTAACCCTTCCCGCAAA+TGG 0.387166 7:+93140782 None:intergenic
GATTCCTGTTAAATAAAGTT+GGG 0.395220 7:-93137737 MsG0780041618.01.T01:three_prime_UTR
TCCATTTGCGGGAAGGGTTA+GGG 0.395505 7:-93140783 MsG0780041618.01.T01:CDS
GGGAGCTAGGCGCAAGTTGA+TGG 0.401324 7:-93140759 MsG0780041618.01.T01:CDS
GAGGTTTAACGCTAACAATT+CGG 0.409376 7:-93138256 MsG0780041618.01.T01:CDS
GTTTATTACTATCCATTTGC+GGG 0.409976 7:-93140794 MsG0780041618.01.T01:CDS
GGTTCATAGTGGCCATGAAT+TGG 0.412673 7:-93138674 MsG0780041618.01.T01:CDS
GCTAACAATTCGGCACTTGT+TGG 0.414011 7:-93138246 MsG0780041618.01.T01:CDS
CTCCGTTTATATTCTTGTAT+GGG 0.416384 7:+93137917 None:intergenic
GAACTCCTATATGATGTTCC+AGG 0.422520 7:-93140635 MsG0780041618.01.T01:CDS
TGATTCCTGTTAAATAAAGT+TGG 0.425021 7:-93137738 MsG0780041618.01.T01:three_prime_UTR
TCATGAGGAGTGGGTGCAGC+TGG 0.430177 7:+93140956 None:intergenic
GGTGTTTATTTACAACTGTA+AGG 0.432833 7:-93138063 MsG0780041618.01.T01:three_prime_UTR
CATTCAACCTGTGTGGAATA+GGG 0.435556 7:-93138568 MsG0780041618.01.T01:CDS
GATGTAACACTTGATCAATT+TGG 0.436107 7:-93140692 MsG0780041618.01.T01:CDS
CCGGCGGCCGTCACCACTGC+AGG 0.441835 7:-93138198 MsG0780041618.01.T01:CDS
CCTATTCCACACAGGTTGAA+TGG 0.443311 7:+93138569 None:intergenic
GTCCCATACAAGAATATAAA+CGG 0.444263 7:-93137919 MsG0780041618.01.T01:three_prime_UTR
GGTGTATGGTGGAGTGCAAA+AGG 0.458018 7:-93137975 MsG0780041618.01.T01:three_prime_UTR
TCCATAATTTGTTCTGAGCC+TGG 0.464966 7:+93140617 None:intergenic
AAAATTGTTCGTATTCAAGA+TGG 0.465942 7:+93138505 None:intergenic
ACCACTGCAGGGAAGCTTTG+TGG 0.467325 7:-93138186 MsG0780041618.01.T01:CDS
CAGCTGCATCACCCATTGTA+TGG 0.471746 7:+93138649 None:intergenic
GAAGAGGTTTGCAAAAGAGT+TGG 0.476327 7:-93137851 MsG0780041618.01.T01:three_prime_UTR
CATGTCTAAGAACCTTAATA+GGG 0.477028 7:+93140834 None:intergenic
AACTCCACTGCATAACAAAT+GGG 0.484543 7:+93138160 None:intergenic
GTGCATTGACGAAGGTGAAA+TGG 0.485395 7:+93138384 None:intergenic
TTACTATCCATTTGCGGGAA+GGG 0.488530 7:-93140789 MsG0780041618.01.T01:CDS
AATATATTACAATAACAAAC+AGG 0.491131 7:+93137683 None:intergenic
CTATCGTCACGAACCATCAA+TGG 0.495351 7:-93140867 MsG0780041618.01.T01:CDS
GTGGAGTGCAAAAGGTGGGC+TGG 0.495600 7:-93137967 MsG0780041618.01.T01:three_prime_UTR
CCGTCCCATTCGACTCATAC+AGG 0.497753 7:-93140594 MsG0780041618.01.T01:intron
TGTTTATTACTATCCATTTG+CGG 0.499605 7:-93140795 MsG0780041618.01.T01:CDS
GTGGAATAGGGAGATTCTAA+TGG 0.500842 7:-93138556 MsG0780041618.01.T01:CDS
CTGAGCCTGGAACATCATAT+AGG 0.505153 7:+93140630 None:intergenic
CTGCAGTGGTGACGGCCGCC+GGG 0.506752 7:+93138199 None:intergenic
TGGACCTGTATGAGTCGAAT+GGG 0.514365 7:+93140590 None:intergenic
TTTCAGATTTGACTCGTGCT+AGG 0.515705 7:-93138030 MsG0780041618.01.T01:three_prime_UTR
GAAGGGTTAGGGAGGGAGCT+AGG 0.523757 7:-93140772 MsG0780041618.01.T01:CDS
AGTTTAACTTCATGAGGAGT+GGG 0.527780 7:+93140947 None:intergenic
AGTTCTTGGAAGCAAGGGAA+TGG 0.536296 7:+93140653 None:intergenic
AAGGTAGACATCACAAAACT+AGG 0.537832 7:+93137787 None:intergenic
GCAGCTGGAAGCACCAACTC+TGG 0.539128 7:+93140971 None:intergenic
AAGCTTCCCTGCAGTGGTGA+CGG 0.539271 7:+93138191 None:intergenic
CATACAATGGGTGATGCAGC+TGG 0.540298 7:-93138648 MsG0780041618.01.T01:CDS
TCCACAAAGCTTCCCTGCAG+TGG 0.542424 7:+93138185 None:intergenic
CTCTAAAGAAGAAAGATCGA+TGG 0.544782 7:+93138439 None:intergenic
GTTAAACCTCGAGCGTGCAT+TGG 0.546237 7:+93138269 None:intergenic
TTCCTTAATAACCATAAGAT+CGG 0.546586 7:+93138087 None:intergenic
TCTGACATTGATGATCAAGA+AGG 0.548394 7:-93140920 MsG0780041618.01.T01:CDS
GCTCAAAAGCACTGCAGTTG+AGG 0.549291 7:-93138322 MsG0780041618.01.T01:CDS
TATAGGAGTTCTTGGAAGCA+AGG 0.549594 7:+93140647 None:intergenic
ATTACTATCCATTTGCGGGA+AGG 0.549774 7:-93140790 MsG0780041618.01.T01:CDS
ATCTTATGGTTATTAAGGAA+CGG 0.549803 7:-93138084 MsG0780041618.01.T01:three_prime_UTR
ATGAATTGGAACCATACAAT+GGG 0.552002 7:-93138660 MsG0780041618.01.T01:CDS
GCGGAGGTGCCAACCAGAGT+TGG 0.552570 7:-93140984 MsG0780041618.01.T01:CDS
GAGTTTAACTTCATGAGGAG+TGG 0.565045 7:+93140946 None:intergenic
ATTCCTGTTAAATAAAGTTG+GGG 0.566024 7:-93137736 MsG0780041618.01.T01:three_prime_UTR
TGCCCTCTGAAGATATGAAG+AGG 0.566120 7:-93137867 MsG0780041618.01.T01:three_prime_UTR
TGAGACAATTCATGACTGCA+TGG 0.568023 7:-93138623 MsG0780041618.01.T01:CDS
CTGGAAGCACCAACTCTGGT+TGG 0.569426 7:+93140975 None:intergenic
TTGGACCTGTATGAGTCGAA+TGG 0.570052 7:+93140589 None:intergenic
GAGAGGAGTTTAACTTCATG+AGG 0.572367 7:+93140941 None:intergenic
GTATGGTGGAGTGCAAAAGG+TGG 0.574042 7:-93137972 MsG0780041618.01.T01:three_prime_UTR
GAGACAATTCATGACTGCAT+GGG 0.576060 7:-93138622 MsG0780041618.01.T01:CDS
TGACGATAGATAAATATGAC+AGG 0.579372 7:+93140881 None:intergenic
ATAGGAGTTCTTGGAAGCAA+GGG 0.581422 7:+93140648 None:intergenic
GTCACACGTCTCAAGTGTGG+TGG 0.581788 7:-93138696 MsG0780041618.01.T01:CDS
TTCCACACAGGTTGAATGGA+AGG 0.582573 7:+93138573 None:intergenic
AAACCTCTTCATATCTTCAG+AGG 0.585787 7:+93137864 None:intergenic
GGGACGATATAGGTTACTCC+AGG 0.594353 7:+93137937 None:intergenic
ATGGTGGATTGTACCGGTGA+GGG 0.599240 7:-93140740 MsG0780041618.01.T01:CDS
ATCACAAAACTAGGAGCACT+CGG 0.604510 7:+93137796 None:intergenic
TATGGTGGAGTGCAAAAGGT+GGG 0.608949 7:-93137971 MsG0780041618.01.T01:three_prime_UTR
AACCTCTTCATATCTTCAGA+GGG 0.608993 7:+93137865 None:intergenic
AGCTAGGCGCAAGTTGATGG+TGG 0.609062 7:-93140756 MsG0780041618.01.T01:CDS
AATAAACATGACACCCTCAC+CGG 0.617483 7:+93140727 None:intergenic
ATTTGCGGGAAGGGTTAGGG+AGG 0.618001 7:-93140780 MsG0780041618.01.T01:CDS
TCTTGGAAGCAAGGGAATGG+AGG 0.619806 7:+93140656 None:intergenic
TGCAGTTGAGGCAAATGAAG+AGG 0.620399 7:-93138310 MsG0780041618.01.T01:CDS
CAAGTGTGGTGGGTTCATAG+TGG 0.622481 7:-93138685 MsG0780041618.01.T01:CDS
TCACACGTCTCAAGTGTGGT+GGG 0.628748 7:-93138695 MsG0780041618.01.T01:CDS
GGTTGCATGTAATGCGTGGA+GGG 0.631354 7:+93138526 None:intergenic
GAAACCCATTTGTTATGCAG+TGG 0.633982 7:-93138164 MsG0780041618.01.T01:CDS
TGCTATATAATGATAATGAA+AGG 0.634415 7:-93137706 MsG0780041618.01.T01:three_prime_UTR
ATTAAAAGCTGAAGTTACAG+AGG 0.635766 7:-93138128 MsG0780041618.01.T01:three_prime_UTR
AAGTTGATGGTGGATTGTAC+CGG 0.636458 7:-93140746 MsG0780041618.01.T01:CDS
TGTCATGTTTATTGAAGCTG+AGG 0.637800 7:-93140717 MsG0780041618.01.T01:CDS
CATGAATTGGAACCATACAA+TGG 0.637861 7:-93138661 MsG0780041618.01.T01:CDS
AAAGAGTTGGATGAGATGCT+TGG 0.638972 7:-93137838 MsG0780041618.01.T01:three_prime_UTR
GACCTTCCATTCAACCTGTG+TGG 0.647046 7:-93138575 MsG0780041618.01.T01:CDS
AGAATCTCCCTATTCCACAC+AGG 0.648794 7:+93138561 None:intergenic
TTCCTGTTAAATAAAGTTGG+GGG 0.657169 7:-93137735 MsG0780041618.01.T01:three_prime_UTR
GCATCGCCAATGCACGCTCG+AGG 0.662333 7:-93138275 MsG0780041618.01.T01:CDS
CGGCGGCCGTCACCACTGCA+GGG 0.662454 7:-93138197 MsG0780041618.01.T01:CDS
CAGGTCACACGTCTCAAGTG+TGG 0.663378 7:-93138699 MsG0780041618.01.T01:CDS
CGTTAATGTTCACAGTGCGG+AGG 0.669288 7:-93141000 None:intergenic
CCTGTATGAGTCGAATGGGA+CGG 0.669954 7:+93140594 None:intergenic
TTTGCGGGAAGGGTTAGGGA+GGG 0.670722 7:-93140779 MsG0780041618.01.T01:CDS
GATGGTGGATTGTACCGGTG+AGG 0.671021 7:-93140741 MsG0780041618.01.T01:CDS
AGAGGAATACATGCATTCTG+TGG 0.672300 7:-93138110 MsG0780041618.01.T01:three_prime_UTR
GCATGGGCAGAAATGGCTCG+AGG 0.681407 7:-93138606 MsG0780041618.01.T01:CDS
CTTGATCATCAATGTCAGAG+AGG 0.682333 7:+93140924 None:intergenic
TGAAGTGATAAGATCGAATG+TGG 0.689533 7:+93138362 None:intergenic
AGATGGTTGCATGTAATGCG+TGG 0.696303 7:+93138522 None:intergenic
CGAATGTGGTGCATTGACGA+AGG 0.710870 7:+93138376 None:intergenic
TGGTTGCATGTAATGCGTGG+AGG 0.724762 7:+93138525 None:intergenic
CATCGTTAATGTTCACAGTG+CGG 0.731695 7:-93141003 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTAATTAATTTTT+TGG - Chr7:93138360-93138379 MsG0780041618.01.T01:CDS 0.0%
!! CTATATTATATATATAATAG+GGG + Chr7:93139261-93139280 None:intergenic 10.0%
!!! AACTTGATAATTAATATAAT+TGG + Chr7:93138078-93138097 None:intergenic 10.0%
!!! TAATTAAAATAATTCGATTT+TGG + Chr7:93138723-93138742 None:intergenic 10.0%
!!! TATAATTTATTGGTTTTTAA+CGG + Chr7:93139722-93139741 None:intergenic 10.0%
!! AATATATTACAATAACAAAC+AGG + Chr7:93140965-93140984 None:intergenic 15.0%
!! TATTAAGTAAAGATATATCT+AGG + Chr7:93139909-93139928 None:intergenic 15.0%
!!! AAATCGAATTATTTTAGTTA+CGG + Chr7:93139017-93138998 None:intergenic 15.0%
!!! AAATCGAATTATTTTAGTTA+GGG - Chr7:93138998-93139017 MsG0780041618.01.T01:intron 15.0%
!!! AATCGAATTATTTTAATTAG+AGG - Chr7:93138724-93138743 MsG0780041618.01.T01:intron 15.0%
!!! AATTCATATGTTTTCTTTAA+TGG + Chr7:93139804-93139823 None:intergenic 15.0%
!!! ATCGAATTATTTTAATTAGA+GGG - Chr7:93138725-93138744 MsG0780041618.01.T01:intron 15.0%
!!! TAACTAAAATAATTCGATTT+TGG - Chr7:93138436-93138455 MsG0780041618.01.T01:CDS 15.0%
!!! TATTAGATTTAAAATATGAC+AGG - Chr7:93139927-93139946 MsG0780041618.01.T01:intron 15.0%
!!! TTTTTCTTAAAAACATATGA+TGG + Chr7:93139356-93139375 None:intergenic 15.0%
!! AAAACCAATAAATTATAACC+AGG - Chr7:93139725-93139744 MsG0780041618.01.T01:intron 20.0%
!! AATAAAAAAATTTACACACC+TGG - Chr7:93138624-93138643 MsG0780041618.01.T01:CDS 20.0%
!! ATATAAAAAAATTGCACATG+TGG + Chr7:93138331-93138350 None:intergenic 20.0%
!! CTAACTAAAATAATTCGATT+TGG + Chr7:93138999-93139018 None:intergenic 20.0%
!! TATCCATGTTAATAACATAA+AGG - Chr7:93138216-93138235 MsG0780041618.01.T01:CDS 20.0%
!! TTAACAAGTAAATCTAAAAG+TGG - Chr7:93139165-93139184 MsG0780041618.01.T01:intron 20.0%
!! TTGTAAACTTGTAATCAATT+CGG + Chr7:93139882-93139901 None:intergenic 20.0%
!!! AATCGAATTATTTTAGTTAC+GGG + Chr7:93138435-93138454 None:intergenic 20.0%
!!! AATCGAATTATTTTAGTTAG+GGG - Chr7:93138999-93139018 MsG0780041618.01.T01:intron 20.0%
!!! AGATGATTTTCCATTAAAAT+AGG - Chr7:93139297-93139316 MsG0780041618.01.T01:intron 20.0%
!!! CAAATCGAATTATTTTAGTT+AGG - Chr7:93138997-93139016 MsG0780041618.01.T01:intron 20.0%
!!! TGCTATATAATGATAATGAA+AGG - Chr7:93140939-93140958 MsG0780041618.01.T01:CDS 20.0%
!!! TTGATAGTTTTTTATCACTT+GGG + Chr7:93139593-93139612 None:intergenic 20.0%
! AAAATTGTTCGTATTCAAGA+TGG + Chr7:93140143-93140162 None:intergenic 25.0%
! AAGCCTTTATGTTATTAACA+TGG + Chr7:93138222-93138241 None:intergenic 25.0%
! ACAAACTACAACAAACTATA+AGG + Chr7:93140880-93140899 None:intergenic 25.0%
! ACTTGATCAAAATTTGCATA+GGG - Chr7:93138940-93138959 MsG0780041618.01.T01:intron 25.0%
! ATCTTATGGTTATTAAGGAA+CGG - Chr7:93140561-93140580 MsG0780041618.01.T01:intron 25.0%
! ATTCCAAATTATGTAACATC+CGG - Chr7:93139567-93139586 MsG0780041618.01.T01:intron 25.0%
! ATTCCTGTTAAATAAAGTTG+GGG - Chr7:93140909-93140928 MsG0780041618.01.T01:CDS 25.0%
! GATTCCTGTTAAATAAAGTT+GGG - Chr7:93140908-93140927 MsG0780041618.01.T01:CDS 25.0%
! GGTTGTTCATAATTTAACTA+CGG + Chr7:93139467-93139486 None:intergenic 25.0%
! TATATATGTACTCTGTCATT+TGG + Chr7:93139026-93139045 None:intergenic 25.0%
! TCAACCTGGTTATAATTTAT+TGG + Chr7:93139732-93139751 None:intergenic 25.0%
! TGATTCCTGTTAAATAAAGT+TGG - Chr7:93140907-93140926 MsG0780041618.01.T01:CDS 25.0%
! TGTTTATTACTATCCATTTG+CGG - Chr7:93137850-93137869 MsG0780041618.01.T01:three_prime_UTR 25.0%
! TTCCTTAATAACCATAAGAT+CGG + Chr7:93140561-93140580 None:intergenic 25.0%
!! ACATGCAAAGCTTTTTAAAT+GGG + Chr7:93139755-93139774 None:intergenic 25.0%
!! ATATATGTACTCTGTCATTT+GGG + Chr7:93139025-93139044 None:intergenic 25.0%
!!! ATCGAATTATTTTAGTTACG+GGG + Chr7:93138434-93138453 None:intergenic 25.0%
!!! GTTGATAGTTTTTTATCACT+TGG + Chr7:93139594-93139613 None:intergenic 25.0%
!!! TCTTATCACTTCATGTTTTT+TGG - Chr7:93140293-93140312 MsG0780041618.01.T01:intron 25.0%
AACTTGTAATCAATTCGGTT+TGG + Chr7:93139877-93139896 None:intergenic 30.0%
AAGACGTGTTCAATACAATT+TGG - Chr7:93139401-93139420 MsG0780041618.01.T01:intron 30.0%
ACTCCCACATAAAAAATAGT+GGG + Chr7:93139142-93139161 None:intergenic 30.0%
ATGAATTGGAACCATACAAT+GGG - Chr7:93139985-93140004 MsG0780041618.01.T01:intron 30.0%
ATTAAAAGCTGAAGTTACAG+AGG - Chr7:93140517-93140536 MsG0780041618.01.T01:intron 30.0%
CATGTCTAAGAACCTTAATA+GGG + Chr7:93137814-93137833 None:intergenic 30.0%
CTCCGTTTATATTCTTGTAT+GGG + Chr7:93140731-93140750 None:intergenic 30.0%
CTTAGTTTACTTTCAACGTT+GGG + Chr7:93139675-93139694 None:intergenic 30.0%
CTTGATCAAAATTTGCATAG+GGG - Chr7:93138941-93138960 MsG0780041618.01.T01:intron 30.0%
GACTTGATCAAAATTTGCAT+AGG - Chr7:93138939-93138958 MsG0780041618.01.T01:intron 30.0%
GATGTAACACTTGATCAATT+TGG - Chr7:93137953-93137972 MsG0780041618.01.T01:three_prime_UTR 30.0%
GGTGTTTATTTACAACTGTA+AGG - Chr7:93140582-93140601 MsG0780041618.01.T01:intron 30.0%
GTCCCATACAAGAATATAAA+CGG - Chr7:93140726-93140745 MsG0780041618.01.T01:CDS 30.0%
GTTTATTACTATCCATTTGC+GGG - Chr7:93137851-93137870 MsG0780041618.01.T01:three_prime_UTR 30.0%
TCAACCAAAATCTTGAAACT+AGG - Chr7:93139428-93139447 MsG0780041618.01.T01:intron 30.0%
TCTCCGTTTATATTCTTGTA+TGG + Chr7:93140732-93140751 None:intergenic 30.0%
TCTTAGTTTACTTTCAACGT+TGG + Chr7:93139676-93139695 None:intergenic 30.0%
TCTTCTTCCTTAATGGTATT+TGG + Chr7:93140171-93140190 None:intergenic 30.0%
TGACGATAGATAAATATGAC+AGG + Chr7:93137767-93137786 None:intergenic 30.0%
TTCCTGTTAAATAAAGTTGG+GGG - Chr7:93140910-93140929 MsG0780041618.01.T01:CDS 30.0%
TTGATCAAAATTTGCATAGG+GGG - Chr7:93138942-93138961 MsG0780041618.01.T01:intron 30.0%
TTTAATGGAGCATGGAAAAA+AGG + Chr7:93139789-93139808 None:intergenic 30.0%
TTTAGCAAAGTTACACCTTA+GGG + Chr7:93139199-93139218 None:intergenic 30.0%
! ACTTGGTAAAAATTAGCCTA+GGG + Chr7:93138292-93138311 None:intergenic 30.0%
! ATCACCTAGTTTCAAGATTT+TGG + Chr7:93139435-93139454 None:intergenic 30.0%
! ATGTTTTCTTTAATGGAGCA+TGG + Chr7:93139797-93139816 None:intergenic 30.0%
! ATTAGGCTTAATAGCAGTTT+TGG + Chr7:93138782-93138801 None:intergenic 30.0%
! CACATGCAAAGCTTTTTAAA+TGG + Chr7:93139756-93139775 None:intergenic 30.0%
! TTTTAGCAAAGTTACACCTT+AGG + Chr7:93139200-93139219 None:intergenic 30.0%
! TTTTTCGCCAAATACCATTA+AGG - Chr7:93140161-93140180 MsG0780041618.01.T01:intron 30.0%
!!! AACACCCACTATTTTTTATG+TGG - Chr7:93139135-93139154 MsG0780041618.01.T01:intron 30.0%
!!! ACACCCACTATTTTTTATGT+GGG - Chr7:93139136-93139155 MsG0780041618.01.T01:intron 30.0%
!!! TTTTGGCTTAATAGCAGTTT+TGG - Chr7:93138377-93138396 MsG0780041618.01.T01:CDS 30.0%
AAACCTCTTCATATCTTCAG+AGG + Chr7:93140784-93140803 None:intergenic 35.0%
AAAGTGGTTAATACACCCTA+AGG - Chr7:93139181-93139200 MsG0780041618.01.T01:intron 35.0%
AACCTCTTCATATCTTCAGA+GGG + Chr7:93140783-93140802 None:intergenic 35.0%
AACTCCACTGCATAACAAAT+GGG + Chr7:93140488-93140507 None:intergenic 35.0%
AAGGTAGACATCACAAAACT+AGG + Chr7:93140861-93140880 None:intergenic 35.0%
ACTCCCACATAAAAACTAGT+GGG - Chr7:93139221-93139240 MsG0780041618.01.T01:intron 35.0%
AGCAGTATCTTCTTCCTTAA+TGG + Chr7:93140178-93140197 None:intergenic 35.0%
ATCGCAACTTCTGTAAACAT+AGG - Chr7:93138753-93138772 MsG0780041618.01.T01:intron 35.0%
ATCGCAACTTCTGTAAACAT+AGG + Chr7:93138772-93138753 None:intergenic 35.0%
ATCGCAACTTCTTGAAACAT+AGG + Chr7:93138406-93138425 None:intergenic 35.0%
ATGGGTTCATGAGCTTAATT+TGG + Chr7:93139652-93139671 None:intergenic 35.0%
ATTCTTGTATGGGACGATAT+AGG + Chr7:93140721-93140740 None:intergenic 35.0%
CACTCCCACATAAAAAATAG+TGG + Chr7:93139143-93139162 None:intergenic 35.0%
CATGAATTGGAACCATACAA+TGG - Chr7:93139984-93140003 MsG0780041618.01.T01:intron 35.0%
CATTGTATGGTTCCAATTCA+TGG + Chr7:93139986-93140005 None:intergenic 35.0%
GAACATCATATAGGAGTTCT+TGG + Chr7:93138009-93138028 None:intergenic 35.0%
GAGGTTTAACGCTAACAATT+CGG - Chr7:93140389-93140408 MsG0780041618.01.T01:intron 35.0%
GCATGTCTAAGAACCTTAAT+AGG + Chr7:93137815-93137834 None:intergenic 35.0%
TCGCAACTTCTGTAAACATA+GGG - Chr7:93138754-93138773 MsG0780041618.01.T01:intron 35.0%
TCGCAACTTCTGTAAACATA+GGG + Chr7:93138773-93138754 None:intergenic 35.0%
TGAAGTGATAAGATCGAATG+TGG + Chr7:93140286-93140305 None:intergenic 35.0%
TGTCATGTTTATTGAAGCTG+AGG - Chr7:93137928-93137947 MsG0780041618.01.T01:three_prime_UTR 35.0%
TTTACTTTCAACGTTGGGAT+GGG + Chr7:93139670-93139689 None:intergenic 35.0%
! AGTTTAACTTCATGAGGAGT+GGG + Chr7:93137701-93137720 None:intergenic 35.0%
! CTCTAAAGAAGAAAGATCGA+TGG + Chr7:93140209-93140228 None:intergenic 35.0%
! CTTCGAAGTGAATTTTGGAT+GGG - Chr7:93140640-93140659 MsG0780041618.01.T01:CDS 35.0%
! CTTGGTAAAAATTAGCCTAG+GGG + Chr7:93138291-93138310 None:intergenic 35.0%
! GACTTGGTAAAAATTAGCCT+AGG + Chr7:93138293-93138312 None:intergenic 35.0%
! GTTTACAGAAGTTGCGATTT+TGG - Chr7:93138264-93138283 MsG0780041618.01.T01:CDS 35.0%
! GTTTACAGAAGTTGCGATTT+TGG + Chr7:93138283-93138264 None:intergenic 35.0%
! GTTTCAAGAAGTTGCGATTT+TGG - Chr7:93138408-93138427 MsG0780041618.01.T01:CDS 35.0%
! TCTGACATTGATGATCAAGA+AGG - Chr7:93137725-93137744 MsG0780041618.01.T01:three_prime_UTR 35.0%
! TCTTCGAAGTGAATTTTGGA+TGG - Chr7:93140639-93140658 MsG0780041618.01.T01:CDS 35.0%
! TTCGAAGTGAATTTTGGATG+GGG - Chr7:93140641-93140660 MsG0780041618.01.T01:CDS 35.0%
! TTGGTAAAAATTAGCCTAGG+GGG + Chr7:93138290-93138309 None:intergenic 35.0%
!! AGCATTGACTTGGTCAAAAT+TGG - Chr7:93138656-93138675 MsG0780041618.01.T01:CDS 35.0%
!! AGCATTGACTTGGTCAAAAT+TGG + Chr7:93138675-93138656 None:intergenic 35.0%
!! CTTTGACACGCCTATTTTAA+TGG + Chr7:93139310-93139329 None:intergenic 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + Chr7:93139227-93139246 None:intergenic 35.0%
!!! TAGTTTTTTATCACTTGGGC+CGG + Chr7:93139589-93139608 None:intergenic 35.0%
AAAGAGTTGGATGAGATGCT+TGG - Chr7:93140807-93140826 MsG0780041618.01.T01:CDS 40.0%
AATAAACATGACACCCTCAC+CGG + Chr7:93137921-93137940 None:intergenic 40.0%
AGAGCTTCATCGTATCTTAG+TGG - Chr7:93139693-93139712 MsG0780041618.01.T01:intron 40.0%
AGAGGAATACATGCATTCTG+TGG - Chr7:93140535-93140554 MsG0780041618.01.T01:intron 40.0%
ATAGGAGTTCTTGGAAGCAA+GGG + Chr7:93138000-93138019 None:intergenic 40.0%
ATTACTATCCATTTGCGGGA+AGG - Chr7:93137855-93137874 MsG0780041618.01.T01:three_prime_UTR 40.0%
CAACTCCACTGCATAACAAA+TGG + Chr7:93140489-93140508 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG - Chr7:93139220-93139239 MsG0780041618.01.T01:intron 40.0%
CATTCAACCTGTGTGGAATA+GGG - Chr7:93140077-93140096 MsG0780041618.01.T01:intron 40.0%
CGCAACTTCTGTAAACATAG+GGG - Chr7:93138755-93138774 MsG0780041618.01.T01:intron 40.0%
CGCAACTTCTGTAAACATAG+GGG + Chr7:93138774-93138755 None:intergenic 40.0%
CTTGATCATCAATGTCAGAG+AGG + Chr7:93137724-93137743 None:intergenic 40.0%
GAACTCCTATATGATGTTCC+AGG - Chr7:93138010-93138029 MsG0780041618.01.T01:three_prime_UTR 40.0%
GAAGAGGTTTGCAAAAGAGT+TGG - Chr7:93140794-93140813 MsG0780041618.01.T01:CDS 40.0%
GAGACAATTCATGACTGCAT+GGG - Chr7:93140023-93140042 MsG0780041618.01.T01:intron 40.0%
GAGCTTCATCGTATCTTAGT+GGG - Chr7:93139694-93139713 MsG0780041618.01.T01:intron 40.0%
GCAACTTCTGTAAACATAGG+GGG - Chr7:93138756-93138775 MsG0780041618.01.T01:intron 40.0%
GCAACTTCTGTAAACATAGG+GGG + Chr7:93138775-93138756 None:intergenic 40.0%
GCAACTTCTTGAAACATAGG+AGG + Chr7:93138403-93138422 None:intergenic 40.0%
GGCCGATCTTATGGTTATTA+AGG - Chr7:93140556-93140575 MsG0780041618.01.T01:intron 40.0%
GGCGTGTCAAAGTTATCTAT+AGG - Chr7:93139318-93139337 MsG0780041618.01.T01:intron 40.0%
GTGGAATAGGGAGATTCTAA+TGG - Chr7:93140089-93140108 MsG0780041618.01.T01:intron 40.0%
GTTTACTTTCAACGTTGGGA+TGG + Chr7:93139671-93139690 None:intergenic 40.0%
TATAGGAGTTCTTGGAAGCA+AGG + Chr7:93138001-93138020 None:intergenic 40.0%
TCCAGGCTCAGAACAAATTA+TGG - Chr7:93138027-93138046 MsG0780041618.01.T01:three_prime_UTR 40.0%
TCTTCAGAGGGCAAACAAAT+TGG + Chr7:93140771-93140790 None:intergenic 40.0%
TGAGACAATTCATGACTGCA+TGG - Chr7:93140022-93140041 MsG0780041618.01.T01:intron 40.0%
TTACTATCCATTTGCGGGAA+GGG - Chr7:93137856-93137875 MsG0780041618.01.T01:three_prime_UTR 40.0%
! ACTTGGTCAAAATTGGCCTA+AGG + Chr7:93138682-93138663 None:intergenic 40.0%
! ACTTGGTCAAAATTGGCCTA+GGG - Chr7:93138663-93138682 MsG0780041618.01.T01:CDS 40.0%
! AGCCCCCAACTTTATTTAAC+AGG + Chr7:93140915-93140934 None:intergenic 40.0%
! AGGCTCTTCGAAGTGAATTT+TGG - Chr7:93140635-93140654 MsG0780041618.01.T01:CDS 40.0%
! CTTGGTCAAAATTGGCCTAA+GGG + Chr7:93138495-93138514 None:intergenic 40.0%
! GAGAGGAGTTTAACTTCATG+AGG + Chr7:93137707-93137726 None:intergenic 40.0%
! GAGTTTAACTTCATGAGGAG+TGG + Chr7:93137702-93137721 None:intergenic 40.0%
! GCTTTTTAAATGGGTCAACC+TGG + Chr7:93139746-93139765 None:intergenic 40.0%
! TCGGCACTTGTTGGATATTA+CGG - Chr7:93140408-93140427 MsG0780041618.01.T01:intron 40.0%
! TGAATTTTGGATGGGGTGAA+GGG - Chr7:93140648-93140667 MsG0780041618.01.T01:CDS 40.0%
! TTGGTCAAAATTGGCCTAAG+GGG + Chr7:93138494-93138513 None:intergenic 40.0%
! TTTCAGATTTGACTCGTGCT+AGG - Chr7:93140615-93140634 MsG0780041618.01.T01:CDS 40.0%
!! AAGTTGATGGTGGATTGTAC+CGG - Chr7:93137899-93137918 MsG0780041618.01.T01:three_prime_UTR 40.0%
!! ACTCAAGTGTTGAGTTTGTG+TGG + Chr7:93139504-93139523 None:intergenic 40.0%
!! ATCACAAAACTAGGAGCACT+CGG + Chr7:93140852-93140871 None:intergenic 40.0%
!! GAAACCCATTTGTTATGCAG+TGG - Chr7:93140481-93140500 MsG0780041618.01.T01:intron 40.0%
!! TCCATAATTTGTTCTGAGCC+TGG + Chr7:93138031-93138050 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + Chr7:93139228-93139247 None:intergenic 40.0%
!!! CACTCGGTGTAAGATGATTT+TGG + Chr7:93140836-93140855 None:intergenic 40.0%
AGAATCTCCCTATTCCACAC+AGG + Chr7:93140087-93140106 None:intergenic 45.0%
AGATGGTTGCATGTAATGCG+TGG + Chr7:93140126-93140145 None:intergenic 45.0%
AGTTCTTGGAAGCAAGGGAA+TGG + Chr7:93137995-93138014 None:intergenic 45.0%
CCATTCAACCTGTGTGGAAT+AGG - Chr7:93140076-93140095 MsG0780041618.01.T01:intron 45.0%
CTATCGTCACGAACCATCAA+TGG - Chr7:93137778-93137797 MsG0780041618.01.T01:three_prime_UTR 45.0%
CTGAGCCTGGAACATCATAT+AGG + Chr7:93138018-93138037 None:intergenic 45.0%
GCTAACAATTCGGCACTTGT+TGG - Chr7:93140399-93140418 MsG0780041618.01.T01:intron 45.0%
GGCAGAGAAAGACCCTATTA+AGG - Chr7:93137799-93137818 MsG0780041618.01.T01:three_prime_UTR 45.0%
GGGCCGGATGTTACATAATT+TGG + Chr7:93139573-93139592 None:intergenic 45.0%
GGTTCATAGTGGCCATGAAT+TGG - Chr7:93139971-93139990 MsG0780041618.01.T01:intron 45.0%
TGATCAAGTCAATGCTGACG+TGG + Chr7:93138929-93138948 None:intergenic 45.0%
TGCAAAGGGGGCAAAACATA+GGG - Chr7:93138695-93138714 MsG0780041618.01.T01:CDS 45.0%
TGCAAAGGGGGCAAAACATA+GGG + Chr7:93138714-93138695 None:intergenic 45.0%
TGCAGTTGAGGCAAATGAAG+AGG - Chr7:93140335-93140354 MsG0780041618.01.T01:intron 45.0%
TGGACCTGTATGAGTCGAAT+GGG + Chr7:93138058-93138077 None:intergenic 45.0%
TGTGTGGAGTCAGACAAATG+AGG + Chr7:93139488-93139507 None:intergenic 45.0%
TTACCAAGTCAATGCTGACG+TGG - Chr7:93138303-93138322 MsG0780041618.01.T01:CDS 45.0%
TTGGACCTGTATGAGTCGAA+TGG + Chr7:93138059-93138078 None:intergenic 45.0%
! CCTATTCCACACAGGTTGAA+TGG + Chr7:93140079-93140098 None:intergenic 45.0%
! CGGTAACTGTTTTGCTTACC+CGG - Chr7:93140428-93140447 MsG0780041618.01.T01:intron 45.0%
! CTTGGTCAAAATTGGCCTAG+GGG - Chr7:93138664-93138683 MsG0780041618.01.T01:CDS 45.0%
! GAATTTTGGATGGGGTGAAG+GGG - Chr7:93140649-93140668 MsG0780041618.01.T01:CDS 45.0%
! GACTTGGTCAAAATTGGCCT+AGG - Chr7:93138662-93138681 MsG0780041618.01.T01:CDS 45.0%
! GTGAATTTTGGATGGGGTGA+AGG - Chr7:93140647-93140666 MsG0780041618.01.T01:CDS 45.0%
! GTGCATTGACGAAGGTGAAA+TGG + Chr7:93140264-93140283 None:intergenic 45.0%
! TAACTGTTTTGCTTACCCGG+CGG - Chr7:93140431-93140450 MsG0780041618.01.T01:intron 45.0%
! TAAGGGGCCAAAAGTGCAAA+GGG + Chr7:93138478-93138497 None:intergenic 45.0%
! TATGGTGGAGTGCAAAAGGT+GGG - Chr7:93140674-93140693 MsG0780041618.01.T01:CDS 45.0%
! TGCCCTCTGAAGATATGAAG+AGG - Chr7:93140778-93140797 MsG0780041618.01.T01:CDS 45.0%
! TTCCACACAGGTTGAATGGA+AGG + Chr7:93140075-93140094 None:intergenic 45.0%
! TTGGTCAAAATTGGCCTAGG+GGG - Chr7:93138665-93138684 MsG0780041618.01.T01:CDS 45.0%
! TTTTGCCCCCTTTGCACTTT+TGG - Chr7:93138468-93138487 MsG0780041618.01.T01:CDS 45.0%
! TTTTGCCCCCTTTGCACTTT+TGG + Chr7:93138487-93138468 None:intergenic 45.0%
!! ATCTATATTATATATATAAT+AGG + Chr7:93139263-93139282 None:intergenic 5.0%
!! TCTATATTATATATATAATA+GGG + Chr7:93139262-93139281 None:intergenic 5.0%
!!! ACTTTTTTAAAAAAAAAATT+AGG + Chr7:93138799-93138818 None:intergenic 5.0%
ATAGGGGGCCAAAGTGCAAA+GGG - Chr7:93138957-93138976 MsG0780041618.01.T01:intron 50.0%
ATCCATTTGCGGGAAGGGTT+AGG - Chr7:93137861-93137880 MsG0780041618.01.T01:three_prime_UTR 50.0%
CAAAGGGGGCAAAACATAGG+GGG - Chr7:93138697-93138716 MsG0780041618.01.T01:CDS 50.0%
CAAAGGGGGCAAAACATAGG+GGG + Chr7:93138716-93138697 None:intergenic 50.0%
CAGCTGCATCACCCATTGTA+TGG + Chr7:93139999-93140018 None:intergenic 50.0%
CATACAATGGGTGATGCAGC+TGG - Chr7:93139997-93140016 MsG0780041618.01.T01:intron 50.0%
CATAGCTGCTCTTCGTCTCT+TGG - Chr7:93140236-93140255 MsG0780041618.01.T01:intron 50.0%
CATGACTGCATGGGCAGAAA+TGG - Chr7:93140032-93140051 MsG0780041618.01.T01:intron 50.0%
CCTGTATGAGTCGAATGGGA+CGG + Chr7:93138054-93138073 None:intergenic 50.0%
GACCTTCCATTCAACCTGTG+TGG - Chr7:93140070-93140089 MsG0780041618.01.T01:intron 50.0%
GCAAAGGGGGCAAAACATAG+GGG - Chr7:93138696-93138715 MsG0780041618.01.T01:CDS 50.0%
GCAAAGGGGGCAAAACATAG+GGG + Chr7:93138715-93138696 None:intergenic 50.0%
GCATCCAACTCAAAGTCGAG+AGG - Chr7:93139624-93139643 MsG0780041618.01.T01:intron 50.0%
GCATTCTGTGGCCGATCTTA+TGG - Chr7:93140547-93140566 MsG0780041618.01.T01:intron 50.0%
GGGACGATATAGGTTACTCC+AGG + Chr7:93140711-93140730 None:intergenic 50.0%
GGGTCTTTCTCTGCCATTGA+TGG + Chr7:93137794-93137813 None:intergenic 50.0%
GGTTGCATGTAATGCGTGGA+GGG + Chr7:93140122-93140141 None:intergenic 50.0%
GTGCAAAGGGGGCAAAACAT+AGG - Chr7:93138694-93138713 MsG0780041618.01.T01:CDS 50.0%
GTGCAAAGGGGGCAAAACAT+AGG + Chr7:93138713-93138694 None:intergenic 50.0%
GTTAAACCTCGAGCGTGCAT+TGG + Chr7:93140379-93140398 None:intergenic 50.0%
TCACACGTCTCAAGTGTGGT+GGG - Chr7:93139950-93139969 MsG0780041618.01.T01:intron 50.0%
TCCATTTGCGGGAAGGGTTA+GGG - Chr7:93137862-93137881 MsG0780041618.01.T01:three_prime_UTR 50.0%
TCTTGGAAGCAAGGGAATGG+AGG + Chr7:93137992-93138011 None:intergenic 50.0%
TGACCAAGTCAATGCTGACG+TGG - Chr7:93138507-93138526 MsG0780041618.01.T01:CDS 50.0%
TGACCAAGTCAATGCTGACG+TGG + Chr7:93138526-93138507 None:intergenic 50.0%
TGGTTGCATGTAATGCGTGG+AGG + Chr7:93140123-93140142 None:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG + Chr7:93139112-93139131 None:intergenic 50.0%
! AAGGGGCCAAAAGTGCAAAG+GGG + Chr7:93138477-93138496 None:intergenic 50.0%
! CGAATGTGGTGCATTGACGA+AGG + Chr7:93140272-93140291 None:intergenic 50.0%
! CTAAGGGGCCAAAAGTGCAA+AGG + Chr7:93138479-93138498 None:intergenic 50.0%
! CTTTGCACTTTTGGCCCCTT+AGG - Chr7:93138477-93138496 MsG0780041618.01.T01:CDS 50.0%
! GGTGTATGGTGGAGTGCAAA+AGG - Chr7:93140670-93140689 MsG0780041618.01.T01:CDS 50.0%
! GTATGGTGGAGTGCAAAAGG+TGG - Chr7:93140673-93140692 MsG0780041618.01.T01:CDS 50.0%
! GTTTTGCCCCCTTTGCACTT+TGG + Chr7:93138486-93138467 None:intergenic 50.0%
! TAGGGGGCCAAAAGTGCAAA+GGG - Chr7:93138681-93138700 MsG0780041618.01.T01:CDS 50.0%
!! ATGCCACGTCAGCATTGACT+TGG + Chr7:93138513-93138532 None:intergenic 50.0%
!! ATGGTGGATTGTACCGGTGA+GGG - Chr7:93137905-93137924 MsG0780041618.01.T01:three_prime_UTR 50.0%
!! CAAGTGTGGTGGGTTCATAG+TGG - Chr7:93139960-93139979 MsG0780041618.01.T01:intron 50.0%
!! GCTCAAAAGCACTGCAGTTG+AGG - Chr7:93140323-93140342 MsG0780041618.01.T01:intron 50.0%
AAGCTTCCCTGCAGTGGTGA+CGG + Chr7:93140457-93140476 None:intergenic 55.0%
ACCACTGCAGGGAAGCTTTG+TGG - Chr7:93140459-93140478 MsG0780041618.01.T01:intron 55.0%
ATTTGCGGGAAGGGTTAGGG+AGG - Chr7:93137865-93137884 MsG0780041618.01.T01:three_prime_UTR 55.0%
CAGGTCACACGTCTCAAGTG+TGG - Chr7:93139946-93139965 MsG0780041618.01.T01:intron 55.0%
CATAGGGGGCCAAAGTGCAA+AGG - Chr7:93138956-93138975 MsG0780041618.01.T01:intron 55.0%
CCGTCCCATTCGACTCATAC+AGG - Chr7:93138051-93138070 MsG0780041618.01.T01:three_prime_UTR 55.0%
GGAGCCTCTCGACTTTGAGT+TGG + Chr7:93139631-93139650 None:intergenic 55.0%
GTCACACGTCTCAAGTGTGG+TGG - Chr7:93139949-93139968 MsG0780041618.01.T01:intron 55.0%
GTGTGTGTGTGTGTGTGGTG+TGG + Chr7:93139109-93139128 None:intergenic 55.0%
TAGGGGGCCAAAGTGCAAAG+GGG - Chr7:93138958-93138977 MsG0780041618.01.T01:intron 55.0%
TCCACAAAGCTTCCCTGCAG+TGG + Chr7:93140463-93140482 None:intergenic 55.0%
TCCCTAACCCTTCCCGCAAA+TGG + Chr7:93137866-93137885 None:intergenic 55.0%
TTTGCGGGAAGGGTTAGGGA+GGG - Chr7:93137866-93137885 MsG0780041618.01.T01:three_prime_UTR 55.0%
! AGGGGCCAAAAGTGCAAAGG+GGG + Chr7:93138476-93138495 None:intergenic 55.0%
! AGGGGGCCAAAAGTGCAAAG+GGG - Chr7:93138682-93138701 MsG0780041618.01.T01:CDS 55.0%
! CTAGGGGGCCAAAAGTGCAA+AGG - Chr7:93138680-93138699 MsG0780041618.01.T01:CDS 55.0%
! CTTTGCACTTTTGGCCCCCT+AGG + Chr7:93138682-93138701 None:intergenic 55.0%
!! AGCTAGGCGCAAGTTGATGG+TGG - Chr7:93137889-93137908 MsG0780041618.01.T01:three_prime_UTR 55.0%
!! AGTTGCGATTTTGGCCCCCT+AGG - Chr7:93138273-93138292 MsG0780041618.01.T01:CDS 55.0%
!! CTGGAAGCACCAACTCTGGT+TGG + Chr7:93137673-93137692 None:intergenic 55.0%
!! GATGGTGGATTGTACCGGTG+AGG - Chr7:93137904-93137923 MsG0780041618.01.T01:three_prime_UTR 55.0%
!!! AGGTGGGCTGGAACTTTTCC+TGG - Chr7:93140690-93140709 MsG0780041618.01.T01:CDS 55.0%
AGGGGGCCAAAGTGCAAAGG+GGG - Chr7:93138959-93138978 MsG0780041618.01.T01:intron 60.0%
GAAGGGTTAGGGAGGGAGCT+AGG - Chr7:93137873-93137892 MsG0780041618.01.T01:three_prime_UTR 60.0%
GCATGGGCAGAAATGGCTCG+AGG - Chr7:93140039-93140058 MsG0780041618.01.T01:intron 60.0%
GTGGAGTGCAAAAGGTGGGC+TGG - Chr7:93140678-93140697 MsG0780041618.01.T01:CDS 60.0%
TCATGAGGAGTGGGTGCAGC+TGG + Chr7:93137692-93137711 None:intergenic 60.0%
! GGATGGGGTGAAGGGGTGTA+TGG - Chr7:93140656-93140675 MsG0780041618.01.T01:CDS 60.0%
! GGGAGCTAGGCGCAAGTTGA+TGG - Chr7:93137886-93137905 MsG0780041618.01.T01:three_prime_UTR 60.0%
! GGGGGCCAAAAGTGCAAAGG+GGG - Chr7:93138683-93138702 MsG0780041618.01.T01:CDS 60.0%
! TGGGGTGAAGGGGTGTATGG+TGG - Chr7:93140659-93140678 MsG0780041618.01.T01:CDS 60.0%
!! GCAGCTGGAAGCACCAACTC+TGG + Chr7:93137677-93137696 None:intergenic 60.0%
!! GCGCCACGTCAGCATTGACT+TGG - Chr7:93138646-93138665 MsG0780041618.01.T01:CDS 60.0%
!! GCGCCACGTCAGCATTGACT+TGG + Chr7:93138665-93138646 None:intergenic 60.0%
GCATCGCCAATGCACGCTCG+AGG - Chr7:93140370-93140389 MsG0780041618.01.T01:intron 65.0%
GTCAATGCTGACGTGGCGCC+AGG + Chr7:93138329-93138310 None:intergenic 65.0%
!! GCGGAGGTGCCAACCAGAGT+TGG - Chr7:93137661-93137680 MsG0780041618.01.T01:three_prime_UTR 65.0%
CGGCGGCCGTCACCACTGCA+GGG - Chr7:93140448-93140467 MsG0780041618.01.T01:intron 75.0%
!! CCTGCAGTGGTGACGGCCGC+CGG + Chr7:93140450-93140469 None:intergenic 75.0%
!! CTGCAGTGGTGACGGCCGCC+GGG + Chr7:93140449-93140468 None:intergenic 75.0%
! CCGGCGGCCGTCACCACTGC+AGG - Chr7:93140447-93140466 MsG0780041618.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr7 gene 93137650 93141017 93137650 ID=MsG0780041618.01;Name=MsG0780041618.01
Chr7 mRNA 93137650 93141017 93137650 ID=MsG0780041618.01.T01;Parent=MsG0780041618.01;Name=MsG0780041618.01.T01;_AED=0.42;_eAED=0.42;_QI=0|1|0.5|1|1|1|2|508|327
Chr7 exon 93137650 93138718 93137650 ID=MsG0780041618.01.T01:exon:22053;Parent=MsG0780041618.01.T01
Chr7 exon 93140595 93141017 93140595 ID=MsG0780041618.01.T01:exon:22052;Parent=MsG0780041618.01.T01
Chr7 CDS 93140595 93141017 93140595 ID=MsG0780041618.01.T01:cds;Parent=MsG0780041618.01.T01
Chr7 CDS 93138158 93138718 93138158 ID=MsG0780041618.01.T01:cds;Parent=MsG0780041618.01.T01
Chr7 three_prime_UTR 93137650 93138157 93137650 ID=MsG0780041618.01.T01:three_prime_utr;Parent=MsG0780041618.01.T01
Gene Sequence

>MsG0780041618.01.T01

ATGTTCACAGTGCGGAGGTGCCAACCAGAGTTGGTGCTTCCAGCTGCACCCACTCCTCATGAAGTTAAACTCCTCTCTGACATTGATGATCAAGAAGGTTTGCGTTTCAATATTCCTGTCATATTTATCTATCGTCACGAACCATCAATGGCAGAGAAAGACCCTATTAAGGTTCTTAGACATGCACTCTCACGAGCACTTGTTTATTACTATCCATTTGCGGGAAGGGTTAGGGAGGGAGCTAGGCGCAAGTTGATGGTGGATTGTACCGGTGAGGGTGTCATGTTTATTGAAGCTGAGGCTGATGTAACACTTGATCAATTTGGTGATGCTCTGCATCCTCCATTCCCTTGCTTCCAAGAACTCCTATATGATGTTCCAGGCTCAGAACAAATTATGGACCGTCCCATTCGACTCATACAGGTCACACGTCTCAAGTGTGGTGGGTTCATAGTGGCCATGAATTGGAACCATACAATGGGTGATGCAGCTGGTTTGAGACAATTCATGACTGCATGGGCAGAAATGGCTCGAGGAGCACATCGACCTTCCATTCAACCTGTGTGGAATAGGGAGATTCTAATGGCAAGAGACCCTCCACGCATTACATGCAACCATCTTGAATACGAACAATTTTTTTCGCCAAATACCATTAAGGAAGAAGATACTGCTTCTCTAGTCCATCGATCTTTCTTCTTTAGAGCTTCTGACATAGCTGCTCTTCGTCTCTTGGTTCCATTTCACCTTCGTCAATGCACCACATTCGATCTTATCACTTCATGTTTTTTGGCGTTGTCGCTCAAAAGCACTGCAGTTGAGGCAAATGAAGAGGTACGAATGATGTGCATCGCCAATGCACGCTCGAGGTTTAACGCTAACAATTCGGCACTTGTTGGATATTACGGTAACTGTTTTGCTTACCCGGCGGCCGTCACCACTGCAGGGAAGCTTTGTGGAAACCCATTTGTTATGCAGTGGAGTTGA

Protein sequence

>MsG0780041618.01.T01

MFTVRRCQPELVLPAAPTPHEVKLLSDIDDQEGLRFNIPVIFIYRHEPSMAEKDPIKVLRHALSRALVYYYPFAGRVREGARRKLMVDCTGEGVMFIEAEADVTLDQFGDALHPPFPCFQELLYDVPGSEQIMDRPIRLIQVTRLKCGGFIVAMNWNHTMGDAAGLRQFMTAWAEMARGAHRPSIQPVWNREILMARDPPRITCNHLEYEQFFSPNTIKEEDTASLVHRSFFFRASDIAALRLLVPFHLRQCTTFDLITSCFLALSLKSTAVEANEEVRMMCIANARSRFNANNSALVGYYGNCFAYPAAVTTAGKLCGNPFVMQWS*