AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026340.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026340.01.T01 MTR_5g044050 98.750 320 4 0 1 320 1 320 0.0 643
MsG0580026340.01.T01 MTR_5g044050 97.872 47 1 0 396 442 320 366 1.39e-22 99.0
MsG0580026340.01.T01 MTR_8g071110 38.854 314 171 7 22 321 57 363 4.88e-57 193
MsG0580026340.01.T01 MTR_1g115505 35.329 334 169 7 24 321 83 405 4.31e-54 187
MsG0580026340.01.T01 MTR_5g021440 89.583 48 4 1 1 48 1 47 2.25e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026340.01.T01 AT1G26520 72.812 320 81 2 4 320 13 329 3.99e-168 477
MsG0580026340.01.T01 AT1G26520 69.048 42 13 0 396 437 329 370 1.52e-11 66.2
MsG0580026340.01.T01 AT1G15730 34.722 360 192 7 24 351 86 434 8.78e-59 199
MsG0580026340.01.T01 AT1G80480 35.777 341 177 7 12 321 71 400 2.97e-57 195

Find 92 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAATTAACACACTAATT+TGG 0.196004 5:-34970244 None:intergenic
GTCTTCATCGTGTTCCATTT+TGG 0.198030 5:-34964528 None:intergenic
TCAACTCTATTGCTAATTTC+TGG 0.198156 5:+34969250 MsG0580026340.01.T01:CDS
CACCTTTGGCATCTATTCTT+TGG 0.207860 5:+34966646 MsG0580026340.01.T01:CDS
TAAGCATGCTGCACATTTAG+AGG 0.274462 5:+34967800 MsG0580026340.01.T01:intron
AATGAGTTTGGTGAGGAAAT+TGG 0.300166 5:+34965971 MsG0580026340.01.T01:CDS
CTACGAGTGTGTTAATGTTA+TGG 0.302882 5:-34967622 None:intergenic
TGAGTTCGAAGAGTATTTAT+AGG 0.307154 5:+34969028 MsG0580026340.01.T01:CDS
TGATGAATTGCATACTTTGC+AGG 0.313404 5:+34968279 MsG0580026340.01.T01:CDS
TATGGCTAGAGGAGATTCTT+TGG 0.317773 5:+34968197 MsG0580026340.01.T01:CDS
ATGAATAAGATAGTATTTAT+AGG 0.327529 5:+34970002 MsG0580026340.01.T01:CDS
AATTCTTAACAAGGTTGATT+TGG 0.330079 5:+34967553 MsG0580026340.01.T01:CDS
TTGGGAGAAGAAATATGATA+TGG 0.330619 5:+34968216 MsG0580026340.01.T01:CDS
ACACATCGACAACTCCAAAA+TGG 0.340081 5:+34964514 MsG0580026340.01.T01:exon
AACAGAAGATTGTTGAGAAA+TGG 0.344084 5:-34964600 None:intergenic
TTAATTAGGTATTGTATAAG+AGG 0.366911 5:+34969223 MsG0580026340.01.T01:intron
GCTGTGATATTGAATGAGTT+TGG 0.371555 5:+34965959 MsG0580026340.01.T01:CDS
GCTATCTGAAAATATGCTTC+AGG 0.372809 5:-34967164 None:intergenic
TTGCACTGTTAAGCATAGTT+TGG 0.374329 5:+34966075 MsG0580026340.01.T01:CDS
AAACAAATACACAGCCTAAC+AGG 0.375928 5:-34970171 None:intergenic
TGTGGCTAATCCAGCACCTT+TGG 0.381484 5:+34966632 MsG0580026340.01.T01:CDS
ACTCTCATCACTGGTTATCT+TGG 0.383465 5:+34964629 MsG0580026340.01.T01:CDS
TCTTTAATTAGAGATGAATC+TGG 0.386347 5:-34969303 None:intergenic
AATCATGGCAGACTCGTATA+TGG 0.391984 5:+34968179 MsG0580026340.01.T01:intron
ACAGGTTGCAAGAGCTTTCA+AGG 0.398690 5:-34970153 None:intergenic
AACCGTCAAACTGTGTTATC+TGG 0.407029 5:-34969117 None:intergenic
TTTGGCATCTATTCTTTGGT+TGG 0.414831 5:+34966650 MsG0580026340.01.T01:CDS
TTCTCTGCACAAGCTGCTCA+AGG 0.418476 5:-34966105 None:intergenic
TAGGCTAGACCATATATTGC+TGG 0.419326 5:+34966599 MsG0580026340.01.T01:intron
AGAATAGATGCCAAAGGTGC+TGG 0.420889 5:-34966642 None:intergenic
CTGGCACCTGCCAGTCATCT+AGG 0.423280 5:-34969098 None:intergenic
TTGGTATCTGCAGAAGGCTC+TGG 0.429405 5:+34967572 MsG0580026340.01.T01:CDS
CAGTAGTTTCCAGCAATATA+TGG 0.431248 5:-34966608 None:intergenic
ATGGCTAGAGGAGATTCTTT+GGG 0.440901 5:+34968198 MsG0580026340.01.T01:CDS
TCCTGTCTCGGAGATGCATA+TGG 0.443042 5:-34967883 None:intergenic
AGTGGAAGAAAGAAGAAAAC+AGG 0.446364 5:+34969979 MsG0580026340.01.T01:CDS
GAAAGCTCTTGCAACCTGTT+AGG 0.451631 5:+34970157 MsG0580026340.01.T01:CDS
ATCACTGGTTATCTTGGTGC+TGG 0.453584 5:+34964635 MsG0580026340.01.T01:CDS
AGGAATAAGCTAACTGCCTC+TGG 0.459959 5:+34969048 MsG0580026340.01.T01:CDS
GAAAGAGCATTGATAAATGA+AGG 0.462576 5:+34965998 MsG0580026340.01.T01:CDS
GTGTATTTGTTTCCTTGTGT+GGG 0.463630 5:+34970182 MsG0580026340.01.T01:three_prime_UTR
AGCCACGGTGCTCCTTGAGC+TGG 0.477134 5:-34967130 None:intergenic
GTGGTGCAGTTGTTGAAGAA+TGG 0.477782 5:+34966026 MsG0580026340.01.T01:CDS
TCTTTGGTTGGATGAACAGT+TGG 0.479469 5:+34966662 MsG0580026340.01.T01:CDS
GTAGTGTTGTGTTAGTTACT+AGG 0.479845 5:+34970296 MsG0580026340.01.T01:three_prime_UTR
GTTGGTGTCACTCTCATCAC+TGG 0.482192 5:+34964620 MsG0580026340.01.T01:CDS
TGGTGCAGTTGTTGAAGAAT+GGG 0.484968 5:+34966027 MsG0580026340.01.T01:CDS
TCTTTCTTCCACTTCCGAGC+CGG 0.485911 5:-34969969 None:intergenic
AGAACTATATGAGATTGTTC+CGG 0.486200 5:+34969950 MsG0580026340.01.T01:CDS
TGTGTATTTGTTTCCTTGTG+TGG 0.493498 5:+34970181 MsG0580026340.01.T01:three_prime_UTR
GAATGGGTTGAACTTGCTAA+TGG 0.500533 5:+34966043 MsG0580026340.01.T01:CDS
AGATTGTTCCGGCTCGGAAG+TGG 0.502579 5:+34969961 MsG0580026340.01.T01:CDS
ATTTCTCAACAATCTTCTGT+TGG 0.503553 5:+34964602 MsG0580026340.01.T01:CDS
ACCATATGCATCTCCGAGAC+AGG 0.504951 5:+34967882 MsG0580026340.01.T01:CDS
AAGATCAACTGTTCCTGTCT+CGG 0.509787 5:-34967895 None:intergenic
CATATATTGCTGGAAACTAC+TGG 0.512907 5:+34966609 MsG0580026340.01.T01:CDS
ATAAGCTAACTGCCTCTGGC+TGG 0.532986 5:+34969052 MsG0580026340.01.T01:CDS
AGGAACAGTTGATCTTGATA+AGG 0.543424 5:+34967902 MsG0580026340.01.T01:CDS
GTCAGCAACTCCTAGATGAC+TGG 0.548785 5:+34969088 MsG0580026340.01.T01:CDS
TCTCTGCACAAGCTGCTCAA+GGG 0.549355 5:-34966104 None:intergenic
TGAACTCTCAACATGGGAAG+AGG 0.549391 5:+34965933 MsG0580026340.01.T01:CDS
AAATGTTCGCTTCCAGCTCA+AGG 0.553773 5:+34967118 MsG0580026340.01.T01:CDS
TTGATAAATGAAGGGGAAAG+TGG 0.553774 5:+34966007 MsG0580026340.01.T01:CDS
CATATATTGAACTCTCAACA+TGG 0.555523 5:+34965926 MsG0580026340.01.T01:CDS
GCAACTCCTAGATGACTGGC+AGG 0.579480 5:+34969092 MsG0580026340.01.T01:CDS
AGAAGGCTCTGGAGCTCTAG+AGG 0.581340 5:+34967583 MsG0580026340.01.T01:CDS
GTTGATTTGGTATCTGCAGA+AGG 0.585096 5:+34967566 MsG0580026340.01.T01:CDS
CTGTTCTATTTCGTTGTGTG+CGG 0.591443 5:-34964454 None:intergenic
AAAGAGCATTGATAAATGAA+GGG 0.594588 5:+34965999 MsG0580026340.01.T01:CDS
GGACATTGTAATTCTTAACA+AGG 0.607377 5:+34967544 MsG0580026340.01.T01:intron
TATATGAGATTGTTCCGGCT+CGG 0.610109 5:+34969955 MsG0580026340.01.T01:CDS
AAGAGCATTGATAAATGAAG+GGG 0.611247 5:+34966000 MsG0580026340.01.T01:CDS
ATGGATGTATACCGTTGCAA+AGG 0.617207 5:+34968235 MsG0580026340.01.T01:CDS
CTGCAGTATCGTAAGCGTGG+CGG 0.624449 5:-34967694 None:intergenic
GACACGTGTCAGCCAGCCAG+AGG 0.628597 5:-34969064 None:intergenic
ATATATTGAACTCTCAACAT+GGG 0.629606 5:+34965927 MsG0580026340.01.T01:CDS
CATTCAAGACTCCTTTGCAA+CGG 0.633864 5:-34968246 None:intergenic
TGTTGAATCTCAACAGCAAG+AGG 0.636495 5:-34964560 None:intergenic
TGAATCTCAACAGCAAGAGG+TGG 0.637466 5:-34964557 None:intergenic
GCAGACTCGTATATGGCTAG+AGG 0.641181 5:+34968186 MsG0580026340.01.T01:intron
TCTTGGTGCTGGAAAATCCA+CGG 0.645225 5:+34964646 MsG0580026340.01.T01:CDS
AGCTTGTGCAGAGAAAAGAA+AGG 0.645456 5:+34966113 MsG0580026340.01.T01:CDS
CAGGAAATGAAGATGAGCCA+CGG 0.651825 5:-34967145 None:intergenic
GTTTGGTGAGGAAATTGGAG+TGG 0.654078 5:+34965976 MsG0580026340.01.T01:CDS
AGCTCTAGAGGAACTCGAGG+AGG 0.659807 5:+34967595 MsG0580026340.01.T01:CDS
AACCAAAGAATAGATGCCAA+AGG 0.660580 5:-34966648 None:intergenic
TTACTGCAGTATCGTAAGCG+TGG 0.673945 5:-34967697 None:intergenic
TGGAGCTCTAGAGGAACTCG+AGG 0.681621 5:+34967592 MsG0580026340.01.T01:CDS
ATTGCTGGAAACTACTGGTG+TGG 0.682013 5:+34966614 MsG0580026340.01.T01:CDS
TTAATATTTATACCCACACA+AGG 0.684499 5:-34970194 None:intergenic
GATATTGAATGAGTTTGGTG+AGG 0.685395 5:+34965964 MsG0580026340.01.T01:CDS
TTCCAGCTCAAGGAGCACCG+TGG 0.718846 5:+34967128 MsG0580026340.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAATCTTACA+GGG + Chr5:34965755-34965774 MsG0580026340.01.T01:intron 10.0%
!! ATTTAAATAAATTACTTATC+TGG + Chr5:34966796-34966815 MsG0580026340.01.T01:intron 10.0%
!! TAAAAAAAAAAAAATCTTAC+AGG + Chr5:34965754-34965773 MsG0580026340.01.T01:intron 10.0%
!! TTATAAATTAAAGTAAAATG+TGG - Chr5:34968573-34968592 None:intergenic 10.0%
!! TTTAAATAAATTACTTATCT+GGG + Chr5:34966797-34966816 MsG0580026340.01.T01:intron 10.0%
!!! CTTTATTTATATATTTGAAA+AGG + Chr5:34969714-34969733 MsG0580026340.01.T01:intron 10.0%
!!! TATATATGTTGATTTTAATT+AGG + Chr5:34969209-34969228 MsG0580026340.01.T01:intron 10.0%
!!! TTACTTTAATTTATAATGAT+GGG + Chr5:34968577-34968596 MsG0580026340.01.T01:intron 10.0%
!!! TTATTTTTATAGACAAATTT+TGG + Chr5:34970266-34970285 MsG0580026340.01.T01:three_prime_UTR 10.0%
!!! TTCATTTTATTTTTGTTATT+GGG + Chr5:34964755-34964774 MsG0580026340.01.T01:intron 10.0%
!!! TTTACTTTAATTTATAATGA+TGG + Chr5:34968576-34968595 MsG0580026340.01.T01:intron 10.0%
!!! TTTCATTTTATTTTTGTTAT+TGG + Chr5:34964754-34964773 MsG0580026340.01.T01:intron 10.0%
!! AAACTCAAATATTATATGAA+AGG - Chr5:34969886-34969905 None:intergenic 15.0%
!! AACTCAAATATTATATGAAA+GGG - Chr5:34969885-34969904 None:intergenic 15.0%
!! AATAAATTAACACACTAATT+TGG - Chr5:34970247-34970266 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + Chr5:34965382-34965401 MsG0580026340.01.T01:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - Chr5:34965401-34965382 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG - Chr5:34965162-34965181 None:intergenic 15.0%
!! ATGAATAAGATAGTATTTAT+AGG + Chr5:34970002-34970021 MsG0580026340.01.T01:CDS 15.0%
!! TATAATCATGTTAATATACA+TGG - Chr5:34969584-34969603 None:intergenic 15.0%
!! TATTTATAAGAGATTCAAAA+GGG - Chr5:34966513-34966532 None:intergenic 15.0%
!! TTATATACATAAGCAATAAT+AGG - Chr5:34966262-34966281 None:intergenic 15.0%
!! TTTATATCATGTTTAAATCA+TGG + Chr5:34968164-34968183 MsG0580026340.01.T01:intron 15.0%
!!! AAATTAATTTTGATGGAAAA+AGG - Chr5:34964683-34964702 None:intergenic 15.0%
!!! AATTAATTCATTTGTTGTTT+GGG + Chr5:34968902-34968921 MsG0580026340.01.T01:intron 15.0%
!!! ATAATTAACCCTTTTTTAAT+TGG + Chr5:34965445-34965464 MsG0580026340.01.T01:intron 15.0%
!!! ATGTTTATTTTTTGATTAAC+AGG + Chr5:34970098-34970117 MsG0580026340.01.T01:intron 15.0%
!!! ATTGTTTGTTATATATTAAC+TGG + Chr5:34967197-34967216 MsG0580026340.01.T01:intron 15.0%
!!! TAGTACAATTAAACATTTTT+AGG + Chr5:34966564-34966583 MsG0580026340.01.T01:intron 15.0%
!!! TTCATATATCTTTTTTTTTG+TGG - Chr5:34967300-34967319 None:intergenic 15.0%
!!! TTGTGTAAGTATTTTTTAAT+GGG + Chr5:34964898-34964917 MsG0580026340.01.T01:intron 15.0%
!!! TTTGTGTAAGTATTTTTTAA+TGG + Chr5:34964897-34964916 MsG0580026340.01.T01:intron 15.0%
!! AAAAGTAATTAATAGTGCAT+TGG - Chr5:34968502-34968521 None:intergenic 20.0%
!! AAAATAACCTTGTTAACTAT+TGG - Chr5:34968610-34968629 None:intergenic 20.0%
!! AAACAAATTTGAATTGAGTA+GGG - Chr5:34965032-34965051 None:intergenic 20.0%
!! AAACCAAATCCAATTAAAAA+AGG - Chr5:34965457-34965476 None:intergenic 20.0%
!! AACCAAATCCAATTAAAAAA+GGG - Chr5:34965456-34965475 None:intergenic 20.0%
!! ACTCAAATATTATATGAAAG+GGG - Chr5:34969884-34969903 None:intergenic 20.0%
!! CAAAAAACACTATAATTGTA+AGG + Chr5:34965786-34965805 MsG0580026340.01.T01:intron 20.0%
!! CCAATTAGAAATTATAGAAA+GGG - Chr5:34964707-34964726 None:intergenic 20.0%
!! CCTTTCTATAATTTCTAATT+GGG + Chr5:34964705-34964724 MsG0580026340.01.T01:intron 20.0%
!! CTATTTATAAGAGATTCAAA+AGG - Chr5:34966514-34966533 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG - Chr5:34965033-34965052 None:intergenic 20.0%
!! TAGATAAATTAGACATTCAT+GGG + Chr5:34969618-34969637 MsG0580026340.01.T01:intron 20.0%
!! TTAGATAAATTAGACATTCA+TGG + Chr5:34969617-34969636 MsG0580026340.01.T01:intron 20.0%
!!! AAAGGGAAAATTAATTTTGA+TGG - Chr5:34964690-34964709 None:intergenic 20.0%
!!! AAATAACTTTTAAGAGGTTT+AGG - Chr5:34970384-34970403 None:intergenic 20.0%
!!! AATAACTTTTAAGAGGTTTA+GGG - Chr5:34970383-34970402 None:intergenic 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG - Chr5:34965127-34965146 None:intergenic 20.0%
!!! AGTACTTATGTTAGTTTTTA+AGG + Chr5:34970344-34970363 MsG0580026340.01.T01:three_prime_UTR 20.0%
!!! ATTTAATCTTGTGCTTTATT+TGG + Chr5:34969642-34969661 MsG0580026340.01.T01:intron 20.0%
!!! CAATTAATTCATTTGTTGTT+TGG + Chr5:34968901-34968920 MsG0580026340.01.T01:intron 20.0%
!!! CATTACAAATAACTTTTAAG+AGG - Chr5:34970390-34970409 None:intergenic 20.0%
!!! CTTACAATTATAGTGTTTTT+TGG - Chr5:34965788-34965807 None:intergenic 20.0%
!!! GCTTTTATCAACATATAAAA+AGG - Chr5:34967008-34967027 None:intergenic 20.0%
!!! TGTCTAATTTATCTAAAACT+TGG - Chr5:34969613-34969632 None:intergenic 20.0%
!!! TTAATTAGGTATTGTATAAG+AGG + Chr5:34969223-34969242 MsG0580026340.01.T01:intron 20.0%
!!! TTGATTTTTAAACCATTCAT+CGG + Chr5:34969905-34969924 MsG0580026340.01.T01:intron 20.0%
!!! TTTTCATATAAACTATAAGC+TGG + Chr5:34966307-34966326 MsG0580026340.01.T01:intron 20.0%
! AAGAAATATTGTTACAGACT+AGG - Chr5:34967462-34967481 None:intergenic 25.0%
! AAGTAAGGACTAAATTTACA+AGG - Chr5:34964957-34964976 None:intergenic 25.0%
! AAGTAAGGATTAAACTTACA+AGG + Chr5:34965397-34965416 MsG0580026340.01.T01:intron 25.0%
! ACATAAGCAATAATAGGATA+AGG - Chr5:34966256-34966275 None:intergenic 25.0%
! ACTCCATATTACAAAATCAT+TGG - Chr5:34965871-34965890 None:intergenic 25.0%
! AGTGTGCATAGTAATAATTA+AGG - Chr5:34968538-34968557 None:intergenic 25.0%
! ATATATTGAACTCTCAACAT+GGG + Chr5:34965927-34965946 MsG0580026340.01.T01:CDS 25.0%
! CACAACAATTTAATGAGAAA+AGG - Chr5:34967250-34967269 None:intergenic 25.0%
! CATAAGCAATAATAGGATAA+GGG - Chr5:34966255-34966274 None:intergenic 25.0%
! CCCAATTAGAAATTATAGAA+AGG - Chr5:34964708-34964727 None:intergenic 25.0%
! CCCTTTCTATAATTTCTAAT+TGG + Chr5:34964704-34964723 MsG0580026340.01.T01:intron 25.0%
! CTATTATTTCAACAAGCTAT+AGG - Chr5:34964788-34964807 None:intergenic 25.0%
! CTCAAATATTATATGAAAGG+GGG - Chr5:34969883-34969902 None:intergenic 25.0%
! GTGTGCATAGTAATAATTAA+GGG - Chr5:34968537-34968556 None:intergenic 25.0%
! TAAAGTAAAATGTGGTACTT+TGG - Chr5:34968565-34968584 None:intergenic 25.0%
! TCAGGGCAAAAAAAAAATTA+GGG - Chr5:34965001-34965020 None:intergenic 25.0%
! TCATCCATTAATGATACTTA+CGG - Chr5:34966718-34966737 None:intergenic 25.0%
! TCTTTAATTAGAGATGAATC+TGG - Chr5:34969306-34969325 None:intergenic 25.0%
! TGTGCATAGTAATAATTAAG+GGG - Chr5:34968536-34968555 None:intergenic 25.0%
! TTAATATTTATACCCACACA+AGG - Chr5:34970197-34970216 None:intergenic 25.0%
! TTATAAATAGATGCAGTGTT+CGG + Chr5:34966524-34966543 MsG0580026340.01.T01:intron 25.0%
! TTTGATGGAAAAAGGTAAAT+GGG - Chr5:34964675-34964694 None:intergenic 25.0%
!! AATTCTTAACAAGGTTGATT+TGG + Chr5:34967553-34967572 MsG0580026340.01.T01:CDS 25.0%
!! ATATTTTCAGATAGCATTTG+CGG + Chr5:34967172-34967191 MsG0580026340.01.T01:CDS 25.0%
!! TCTTGTTAATTTTGTGATAG+TGG + Chr5:34966975-34966994 MsG0580026340.01.T01:intron 25.0%
!! TTTTGATGGAAAAAGGTAAA+TGG - Chr5:34964676-34964695 None:intergenic 25.0%
!!! AAAGAGCATTGATAAATGAA+GGG + Chr5:34965999-34966018 MsG0580026340.01.T01:CDS 25.0%
!!! AACCCTTTTTTAATTGGATT+TGG + Chr5:34965451-34965470 MsG0580026340.01.T01:intron 25.0%
!!! AATAATTAAGGGGTACTATT+GGG - Chr5:34968526-34968545 None:intergenic 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG + Chr5:34965321-34965340 MsG0580026340.01.T01:intron 25.0%
!!! ATGTTAGTTTTTAAGGTTCT+GGG + Chr5:34970351-34970370 MsG0580026340.01.T01:three_prime_UTR 25.0%
!!! ATTTATTTCTATAAGCTCTC+TGG - Chr5:34966347-34966366 None:intergenic 25.0%
!!! CTTTTTTGTTTTTTGAGCAA+TGG + Chr5:34966747-34966766 MsG0580026340.01.T01:intron 25.0%
!!! TAATAATTAAGGGGTACTAT+TGG - Chr5:34968527-34968546 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG + Chr5:34965320-34965339 MsG0580026340.01.T01:intron 25.0%
!!! TATGTTAGTTTTTAAGGTTC+TGG + Chr5:34970350-34970369 MsG0580026340.01.T01:three_prime_UTR 25.0%
!!! TCTTTTTAAAACAGTAACAG+TGG - Chr5:34968752-34968771 None:intergenic 25.0%
!!! TTTATTTCTATAAGCTCTCT+GGG - Chr5:34966346-34966365 None:intergenic 25.0%
!!! TTTTAGGTATTTGTGTTTGT+AGG + Chr5:34966580-34966599 MsG0580026340.01.T01:intron 25.0%
AAATGCACCAATAGTTAACA+AGG + Chr5:34968600-34968619 MsG0580026340.01.T01:intron 30.0%
AACAAATATATGAGACGAAG+AGG - Chr5:34969500-34969519 None:intergenic 30.0%
AACAGAAGATTGTTGAGAAA+TGG - Chr5:34964603-34964622 None:intergenic 30.0%
AACAGTATCATTTGTTTGAC+AGG - Chr5:34966866-34966885 None:intergenic 30.0%
AACCTTTGTAACTGTTATAC+TGG + Chr5:34965825-34965844 MsG0580026340.01.T01:intron 30.0%
AATATTGTTACAGACTAGGT+AGG - Chr5:34967458-34967477 None:intergenic 30.0%
AATTAAGTTTGCATTCGCAT+TGG + Chr5:34968724-34968743 MsG0580026340.01.T01:intron 30.0%
ACAAATATATGAGACGAAGA+GGG - Chr5:34969499-34969518 None:intergenic 30.0%
ACAGTATCATTTGTTTGACA+GGG - Chr5:34966865-34966884 None:intergenic 30.0%
ACTAAAAAGCTTCATGATAG+TGG + Chr5:34967852-34967871 MsG0580026340.01.T01:CDS 30.0%
AGAACTATATGAGATTGTTC+CGG + Chr5:34969950-34969969 MsG0580026340.01.T01:CDS 30.0%
AGTATGCTAAAAGAGAAACA+AGG + Chr5:34969335-34969354 MsG0580026340.01.T01:intron 30.0%
AGTTATAACAGAGAAGCTAA+AGG - Chr5:34968965-34968984 None:intergenic 30.0%
ATATTGTTACAGACTAGGTA+GGG - Chr5:34967457-34967476 None:intergenic 30.0%
ATGTTCTTCTGTATCTAAGA+AGG + Chr5:34968350-34968369 MsG0580026340.01.T01:intron 30.0%
ATTGTCCAAGAAATAGTTCT+TGG + Chr5:34966907-34966926 MsG0580026340.01.T01:intron 30.0%
ATTTCTCAACAATCTTCTGT+TGG + Chr5:34964602-34964621 MsG0580026340.01.T01:CDS 30.0%
CAAGATTAGAACACTATGAA+AGG - Chr5:34965259-34965278 None:intergenic 30.0%
CATATATTGAACTCTCAACA+TGG + Chr5:34965926-34965945 MsG0580026340.01.T01:CDS 30.0%
CGCACTAGAAATTTAAACAT+TGG + Chr5:34966167-34966186 MsG0580026340.01.T01:intron 30.0%
CTAAATTATCAGCATAGACA+GGG - Chr5:34967393-34967412 None:intergenic 30.0%
CTAGTAACACTTCAAAAATC+TGG + Chr5:34969413-34969432 MsG0580026340.01.T01:intron 30.0%
CTCAGGGCAAAAAAAAAATT+AGG - Chr5:34965002-34965021 None:intergenic 30.0%
GCTTAAAAGAGAAACAAAAC+AGG - Chr5:34967785-34967804 None:intergenic 30.0%
GGACATTGTAATTCTTAACA+AGG + Chr5:34967544-34967563 MsG0580026340.01.T01:intron 30.0%
GTATGGATGTAATGTCTTAT+AGG - Chr5:34968789-34968808 None:intergenic 30.0%
GTTGTAGAATCTACAATCTA+GGG - Chr5:34968882-34968901 None:intergenic 30.0%
TAAATTATCAGCATAGACAG+GGG - Chr5:34967392-34967411 None:intergenic 30.0%
TAACACTTCAAAAATCTGGT+TGG + Chr5:34969417-34969436 MsG0580026340.01.T01:intron 30.0%
TAGAAAATGCCGAAATTGTT+AGG + Chr5:34965650-34965669 MsG0580026340.01.T01:intron 30.0%
TCAACTCTATTGCTAATTTC+TGG + Chr5:34969250-34969269 MsG0580026340.01.T01:CDS 30.0%
TCTAATTGAGATCGAACTTA+TGG - Chr5:34965634-34965653 None:intergenic 30.0%
TGGTCAAAACAAAAATCTTG+TGG + Chr5:34969662-34969681 MsG0580026340.01.T01:intron 30.0%
TGTAATATGGAGTTGTGAAT+TGG + Chr5:34965878-34965897 MsG0580026340.01.T01:intron 30.0%
TGTTGTAGAATCTACAATCT+AGG - Chr5:34968883-34968902 None:intergenic 30.0%
TTCCAGTATAACAGTTACAA+AGG - Chr5:34965830-34965849 None:intergenic 30.0%
TTGGACTCATAATTACACTT+AGG + Chr5:34966186-34966205 MsG0580026340.01.T01:intron 30.0%
TTGGGAGAAGAAATATGATA+TGG + Chr5:34968216-34968235 MsG0580026340.01.T01:CDS 30.0%
! AATTTTACATGCATAACCAC+TGG - Chr5:34968393-34968412 None:intergenic 30.0%
! ACATTTTATAGTACCTGTCA+TGG + Chr5:34966932-34966951 MsG0580026340.01.T01:intron 30.0%
! TATTTCTTGGACAATTTTGC+GGG - Chr5:34966902-34966921 None:intergenic 30.0%
! TTTTTGGATGATAGATGAAG+TGG - Chr5:34965727-34965746 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + Chr5:34968692-34968711 MsG0580026340.01.T01:intron 30.0%
!! AAGAGCATTGATAAATGAAG+GGG + Chr5:34966000-34966019 MsG0580026340.01.T01:CDS 30.0%
!! CTATTTCTTGGACAATTTTG+CGG - Chr5:34966903-34966922 None:intergenic 30.0%
!! GAAAGAGCATTGATAAATGA+AGG + Chr5:34965998-34966017 MsG0580026340.01.T01:CDS 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + Chr5:34965413-34965432 MsG0580026340.01.T01:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - Chr5:34965432-34965413 None:intergenic 30.0%
!! TAGTAAAAGTGTCATGTCTA+TGG + Chr5:34968629-34968648 MsG0580026340.01.T01:intron 30.0%
!! TGAGTTCGAAGAGTATTTAT+AGG + Chr5:34969028-34969047 MsG0580026340.01.T01:CDS 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + Chr5:34965412-34965431 MsG0580026340.01.T01:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - Chr5:34965431-34965412 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - Chr5:34968456-34968437 None:intergenic 30.0%
AAACAAATACACAGCCTAAC+AGG - Chr5:34970174-34970193 None:intergenic 35.0%
AACCAAAGAATAGATGCCAA+AGG - Chr5:34966651-34966670 None:intergenic 35.0%
AAGCACTTGTGAGATTCTTA+GGG - Chr5:34966415-34966434 None:intergenic 35.0%
AAGTACACAGAACCATAACT+TGG - Chr5:34968854-34968873 None:intergenic 35.0%
AATTGCCATGTACCAAGTTA+TGG + Chr5:34968839-34968858 MsG0580026340.01.T01:intron 35.0%
ACGTCAAGGACTAAAAACAA+CGG - Chr5:34965496-34965515 None:intergenic 35.0%
AGGAACAGTTGATCTTGATA+AGG + Chr5:34967902-34967921 MsG0580026340.01.T01:CDS 35.0%
AGTGGAAGAAAGAAGAAAAC+AGG + Chr5:34969979-34969998 MsG0580026340.01.T01:CDS 35.0%
ATTACAAAATCATTGGCCGA+GGG - Chr5:34965864-34965883 None:intergenic 35.0%
CAAATATATGAGACGAAGAG+GGG - Chr5:34969498-34969517 None:intergenic 35.0%
CACTTGAAAACTCACAAGTT+AGG - Chr5:34965697-34965716 None:intergenic 35.0%
CAGTAGTTTCCAGCAATATA+TGG - Chr5:34966611-34966630 None:intergenic 35.0%
CATATATTGCTGGAAACTAC+TGG + Chr5:34966609-34966628 MsG0580026340.01.T01:CDS 35.0%
CCTAAATTATCAGCATAGAC+AGG - Chr5:34967394-34967413 None:intergenic 35.0%
CCTGTCTATGCTGATAATTT+AGG + Chr5:34967391-34967410 MsG0580026340.01.T01:intron 35.0%
CTACGAGTGTGTTAATGTTA+TGG - Chr5:34967625-34967644 None:intergenic 35.0%
GCTATCTGAAAATATGCTTC+AGG - Chr5:34967167-34967186 None:intergenic 35.0%
GCTGTGATATTGAATGAGTT+TGG + Chr5:34965959-34965978 MsG0580026340.01.T01:CDS 35.0%
GTAGTGTTGTGTTAGTTACT+AGG + Chr5:34970296-34970315 MsG0580026340.01.T01:three_prime_UTR 35.0%
GTCACCGTAAGTATCATTAA+TGG + Chr5:34966711-34966730 MsG0580026340.01.T01:intron 35.0%
GTGTATTTGTTTCCTTGTGT+GGG + Chr5:34970182-34970201 MsG0580026340.01.T01:three_prime_UTR 35.0%
TAAGCACTTGTGAGATTCTT+AGG - Chr5:34966416-34966435 None:intergenic 35.0%
TATTACAAAATCATTGGCCG+AGG - Chr5:34965865-34965884 None:intergenic 35.0%
TGATGAATTGCATACTTTGC+AGG + Chr5:34968279-34968298 MsG0580026340.01.T01:CDS 35.0%
TGTGTATTTGTTTCCTTGTG+TGG + Chr5:34970181-34970200 MsG0580026340.01.T01:three_prime_UTR 35.0%
TTCAAAAATCTGGTTGGACA+TGG + Chr5:34969423-34969442 MsG0580026340.01.T01:intron 35.0%
TTGATAAATGAAGGGGAAAG+TGG + Chr5:34966007-34966026 MsG0580026340.01.T01:CDS 35.0%
TTGCACTGTTAAGCATAGTT+TGG + Chr5:34966075-34966094 MsG0580026340.01.T01:CDS 35.0%
TTGTCAAGATCACTGAAGTA+TGG - Chr5:34968806-34968825 None:intergenic 35.0%
TTTGATCAGAACGATCACAA+AGG - Chr5:34969172-34969191 None:intergenic 35.0%
TTTGGCATCTATTCTTTGGT+TGG + Chr5:34966650-34966669 MsG0580026340.01.T01:CDS 35.0%
! AATGAGTTTGGTGAGGAAAT+TGG + Chr5:34965971-34965990 MsG0580026340.01.T01:CDS 35.0%
! AATTGTGTTTCTACCGAAGT+AGG + Chr5:34967082-34967101 MsG0580026340.01.T01:intron 35.0%
! ATAATGTTGCTGCTTCTTTC+AGG + Chr5:34967523-34967542 MsG0580026340.01.T01:intron 35.0%
! ATTAGTTTGAATGCCATGAC+AGG - Chr5:34966948-34966967 None:intergenic 35.0%
! CGGCCAATGATTTTGTAATA+TGG + Chr5:34965865-34965884 MsG0580026340.01.T01:intron 35.0%
! GATATTGAATGAGTTTGGTG+AGG + Chr5:34965964-34965983 MsG0580026340.01.T01:CDS 35.0%
! GTTACTAGCTCTTGGAATTT+AGG - Chr5:34969401-34969420 None:intergenic 35.0%
! TGTCTCCAAGAACTATTTCT+TGG - Chr5:34966915-34966934 None:intergenic 35.0%
! TTTGAAGTGTTACTAGCTCT+TGG - Chr5:34969409-34969428 None:intergenic 35.0%
!! AGCTCTTGGAATTTAGGTTT+TGG - Chr5:34969395-34969414 None:intergenic 35.0%
!! CTAACTTGTGAGTTTTCAAG+TGG + Chr5:34965695-34965714 MsG0580026340.01.T01:intron 35.0%
!!! TTTGCGATAATTTTTTGCGG+AGG - Chr5:34965124-34965143 None:intergenic 35.0%
AACCGTCAAACTGTGTTATC+TGG - Chr5:34969120-34969139 None:intergenic 40.0%
AAGATCAACTGTTCCTGTCT+CGG - Chr5:34967898-34967917 None:intergenic 40.0%
AATCATGGCAGACTCGTATA+TGG + Chr5:34968179-34968198 MsG0580026340.01.T01:intron 40.0%
ACACATCGACAACTCCAAAA+TGG + Chr5:34964514-34964533 MsG0580026340.01.T01:exon 40.0%
AGCTTGTGCAGAGAAAAGAA+AGG + Chr5:34966113-34966132 MsG0580026340.01.T01:CDS 40.0%
AGGTCCATTGCATAATGTTG+CGG + Chr5:34966471-34966490 MsG0580026340.01.T01:intron 40.0%
ATGGATGTATACCGTTGCAA+AGG + Chr5:34968235-34968254 MsG0580026340.01.T01:CDS 40.0%
ATGGCTAGAGGAGATTCTTT+GGG + Chr5:34968198-34968217 MsG0580026340.01.T01:CDS 40.0%
CACCTTTGGCATCTATTCTT+TGG + Chr5:34966646-34966665 MsG0580026340.01.T01:CDS 40.0%
CAGAACCATAACTTGGTACA+TGG - Chr5:34968847-34968866 None:intergenic 40.0%
CATTCAAGACTCCTTTGCAA+CGG - Chr5:34968249-34968268 None:intergenic 40.0%
CTGTTCTATTTCGTTGTGTG+CGG - Chr5:34964457-34964476 None:intergenic 40.0%
GGACTAAAAACAACGGAGTT+TGG - Chr5:34965489-34965508 None:intergenic 40.0%
GGAGATTGCTAACACATAGA+TGG - Chr5:34969477-34969496 None:intergenic 40.0%
GGCATTCAGCCTAACAATTT+CGG - Chr5:34965662-34965681 None:intergenic 40.0%
TAAACTGCAGTCATGAAGGT+GGG - Chr5:34967762-34967781 None:intergenic 40.0%
TAAGCATGCTGCACATTTAG+AGG + Chr5:34967800-34967819 MsG0580026340.01.T01:intron 40.0%
TAGGCTAGACCATATATTGC+TGG + Chr5:34966599-34966618 MsG0580026340.01.T01:intron 40.0%
TATATGAGATTGTTCCGGCT+CGG + Chr5:34969955-34969974 MsG0580026340.01.T01:CDS 40.0%
TATGGCTAGAGGAGATTCTT+TGG + Chr5:34968197-34968216 MsG0580026340.01.T01:CDS 40.0%
TCAGATAAGGTAATCCAAGC+AGG + Chr5:34966451-34966470 MsG0580026340.01.T01:intron 40.0%
TCTTTGGTTGGATGAACAGT+TGG + Chr5:34966662-34966681 MsG0580026340.01.T01:CDS 40.0%
TGAACCGCAACATTATGCAA+TGG - Chr5:34966478-34966497 None:intergenic 40.0%
TGAGTAGGGACTAATACTCA+GGG - Chr5:34965018-34965037 None:intergenic 40.0%
TGCCAGATAACACAGTTTGA+CGG + Chr5:34969115-34969134 MsG0580026340.01.T01:intron 40.0%
TGGTGCAGTTGTTGAAGAAT+GGG + Chr5:34966027-34966046 MsG0580026340.01.T01:CDS 40.0%
TGTTGAATCTCAACAGCAAG+AGG - Chr5:34964563-34964582 None:intergenic 40.0%
TTGAGTAGGGACTAATACTC+AGG - Chr5:34965019-34965038 None:intergenic 40.0%
TTGGCATCTACTACCTACTT+CGG - Chr5:34967098-34967117 None:intergenic 40.0%
! ACAGACTAGGTAGGGTATTA+TGG - Chr5:34967449-34967468 None:intergenic 40.0%
! ACATGATGAGCATTGTCTTG+TGG + Chr5:34970027-34970046 MsG0580026340.01.T01:intron 40.0%
! ACTCTCATCACTGGTTATCT+TGG + Chr5:34964629-34964648 MsG0580026340.01.T01:CDS 40.0%
! AGAACAAAGCATTCTCTGCT+AGG - Chr5:34968080-34968099 None:intergenic 40.0%
! CTAGTGGATAAGCTCAGATA+AGG + Chr5:34966438-34966457 MsG0580026340.01.T01:intron 40.0%
! GTCTTCATCGTGTTCCATTT+TGG - Chr5:34964531-34964550 None:intergenic 40.0%
! TGTTCTTGTGCTGCGTTTTT+GGG - Chr5:34964493-34964512 None:intergenic 40.0%
! TTGTTCTTGTGCTGCGTTTT+TGG - Chr5:34964494-34964513 None:intergenic 40.0%
!! AAAAGGTAAATGGGTTACCG+TGG - Chr5:34964666-34964685 None:intergenic 40.0%
!! GAATGGGTTGAACTTGCTAA+TGG + Chr5:34966043-34966062 MsG0580026340.01.T01:CDS 40.0%
!! GTTGATTTGGTATCTGCAGA+AGG + Chr5:34967566-34967585 MsG0580026340.01.T01:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + Chr5:34968696-34968715 MsG0580026340.01.T01:intron 40.0%
AAATGTTCGCTTCCAGCTCA+AGG + Chr5:34967118-34967137 MsG0580026340.01.T01:CDS 45.0%
AACTCACAAGTTAGGATCCC+AGG - Chr5:34965689-34965708 None:intergenic 45.0%
AATCACGCACTTGTGTACTG+AGG - Chr5:34967040-34967059 None:intergenic 45.0%
ACACAGTTTGACGGTTACAC+AGG + Chr5:34969124-34969143 MsG0580026340.01.T01:intron 45.0%
ACAGGTTGCAAGAGCTTTCA+AGG - Chr5:34970156-34970175 None:intergenic 45.0%
ACCATTCATCGGTGAAATCC+TGG + Chr5:34969916-34969935 MsG0580026340.01.T01:intron 45.0%
AGATTCTTAGGGAGAGCTCA+TGG - Chr5:34966404-34966423 None:intergenic 45.0%
AGGAATAAGCTAACTGCCTC+TGG + Chr5:34969048-34969067 MsG0580026340.01.T01:CDS 45.0%
AGTACACTATTTATGCCCCG+TGG - Chr5:34967996-34968015 None:intergenic 45.0%
AGTCCTTGACGTCAGCTTAT+TGG + Chr5:34965504-34965523 MsG0580026340.01.T01:intron 45.0%
ATAAGATCCGTCTTCACCAG+TGG + Chr5:34968374-34968393 MsG0580026340.01.T01:intron 45.0%
ATCAACGATTCCTGCTACCA+CGG + Chr5:34967976-34967995 MsG0580026340.01.T01:intron 45.0%
ATTGCTGGAAACTACTGGTG+TGG + Chr5:34966614-34966633 MsG0580026340.01.T01:CDS 45.0%
CACAGTTTGACGGTTACACA+GGG + Chr5:34969125-34969144 MsG0580026340.01.T01:intron 45.0%
CAGGAAATGAAGATGAGCCA+CGG - Chr5:34967148-34967167 None:intergenic 45.0%
CAGGTAAACTGCAGTCATGA+AGG - Chr5:34967766-34967785 None:intergenic 45.0%
CATAGACAGGGGAAGTTACT+TGG - Chr5:34967381-34967400 None:intergenic 45.0%
CATTATGCAATGGACCTGCT+TGG - Chr5:34966468-34966487 None:intergenic 45.0%
CTCACAAGTGCTTATGCTAG+TGG + Chr5:34966422-34966441 MsG0580026340.01.T01:intron 45.0%
CTCAGTATAATCGCAACACG+CGG - Chr5:34965538-34965557 None:intergenic 45.0%
GAAAGCTCTTGCAACCTGTT+AGG + Chr5:34970157-34970176 MsG0580026340.01.T01:CDS 45.0%
GCATTCTCTGCTAGGCATTA+TGG - Chr5:34968072-34968091 None:intergenic 45.0%
GTAAACTGCAGTCATGAAGG+TGG - Chr5:34967763-34967782 None:intergenic 45.0%
GTCCTTGACGTCAGCTTATT+GGG + Chr5:34965505-34965524 MsG0580026340.01.T01:intron 45.0%
GTGGTGCAGTTGTTGAAGAA+TGG + Chr5:34966026-34966045 MsG0580026340.01.T01:CDS 45.0%
TGAACTCTCAACATGGGAAG+AGG + Chr5:34965933-34965952 MsG0580026340.01.T01:CDS 45.0%
TGAATCTCAACAGCAAGAGG+TGG - Chr5:34964560-34964579 None:intergenic 45.0%
TGCATAACCACTGGTGAAGA+CGG - Chr5:34968384-34968403 None:intergenic 45.0%
TTACTGCAGTATCGTAAGCG+TGG - Chr5:34967700-34967719 None:intergenic 45.0%
! AGAATAGATGCCAAAGGTGC+TGG - Chr5:34966645-34966664 None:intergenic 45.0%
! ATCACTGGTTATCTTGGTGC+TGG + Chr5:34964635-34964654 MsG0580026340.01.T01:CDS 45.0%
! GAGCTGGAAGCGAACATTTT+TGG - Chr5:34967117-34967136 None:intergenic 45.0%
! GTTTGGTGAGGAAATTGGAG+TGG + Chr5:34965976-34965995 MsG0580026340.01.T01:CDS 45.0%
!! TCTTGGTGCTGGAAAATCCA+CGG + Chr5:34964646-34964665 MsG0580026340.01.T01:CDS 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + Chr5:34968695-34968714 MsG0580026340.01.T01:intron 45.0%
!!! ATAAGTAAATTTTTTTTATA+GGG + Chr5:34965353-34965372 MsG0580026340.01.T01:intron 5.0%
!!! TATAAGTAAATTTTTTTTAT+AGG + Chr5:34965352-34965371 MsG0580026340.01.T01:intron 5.0%
!!! TTTTTTTTAGATTTTATTTT+TGG - Chr5:34965743-34965762 None:intergenic 5.0%
ACCATATGCATCTCCGAGAC+AGG + Chr5:34967882-34967901 MsG0580026340.01.T01:CDS 50.0%
AGATGCAGTGTTCGGCAAAG+TGG + Chr5:34966532-34966551 MsG0580026340.01.T01:intron 50.0%
ATAAGCTAACTGCCTCTGGC+TGG + Chr5:34969052-34969071 MsG0580026340.01.T01:CDS 50.0%
CAAGTTAGGATCCCAGGTCA+TGG - Chr5:34965683-34965702 None:intergenic 50.0%
GACGTCAGCTTATTGGGCAT+TGG + Chr5:34965511-34965530 MsG0580026340.01.T01:intron 50.0%
GATGCAGTGTTCGGCAAAGT+GGG + Chr5:34966533-34966552 MsG0580026340.01.T01:intron 50.0%
GCAGACTCGTATATGGCTAG+AGG + Chr5:34968186-34968205 MsG0580026340.01.T01:intron 50.0%
GCCAGGATTTCACCGATGAA+TGG - Chr5:34969920-34969939 None:intergenic 50.0%
GTCAGCAACTCCTAGATGAC+TGG + Chr5:34969088-34969107 MsG0580026340.01.T01:CDS 50.0%
TAGGCTGAATGCCATGACCT+GGG + Chr5:34965669-34965688 MsG0580026340.01.T01:intron 50.0%
TATTTATGCCCCGTGGTAGC+AGG - Chr5:34967989-34968008 None:intergenic 50.0%
TCAACGATTCCTGCTACCAC+GGG + Chr5:34967977-34967996 MsG0580026340.01.T01:intron 50.0%
TCCTGTCTCGGAGATGCATA+TGG - Chr5:34967886-34967905 None:intergenic 50.0%
TCTCTGCACAAGCTGCTCAA+GGG - Chr5:34966107-34966126 None:intergenic 50.0%
TCTTTCTTCCACTTCCGAGC+CGG - Chr5:34969972-34969991 None:intergenic 50.0%
TGCCCAATAAGCTGACGTCA+AGG - Chr5:34965510-34965529 None:intergenic 50.0%
TGTGGCTAATCCAGCACCTT+TGG + Chr5:34966632-34966651 MsG0580026340.01.T01:CDS 50.0%
TTAGGCTGAATGCCATGACC+TGG + Chr5:34965668-34965687 MsG0580026340.01.T01:intron 50.0%
TTCATCGGTGAAATCCTGGC+AGG + Chr5:34969920-34969939 MsG0580026340.01.T01:intron 50.0%
TTCTCTGCACAAGCTGCTCA+AGG - Chr5:34966108-34966127 None:intergenic 50.0%
TTGGTATCTGCAGAAGGCTC+TGG + Chr5:34967572-34967591 MsG0580026340.01.T01:CDS 50.0%
! TGGAAGTGTGTTCGAACCCT+CGG + Chr5:34965845-34965864 MsG0580026340.01.T01:intron 50.0%
!! GTTGGTGTCACTCTCATCAC+TGG + Chr5:34964620-34964639 MsG0580026340.01.T01:CDS 50.0%
CAACGATTCCTGCTACCACG+GGG + Chr5:34967978-34967997 MsG0580026340.01.T01:intron 55.0%
CTGCAGTATCGTAAGCGTGG+CGG - Chr5:34967697-34967716 None:intergenic 55.0%
GCAACTCCTAGATGACTGGC+AGG + Chr5:34969092-34969111 MsG0580026340.01.T01:CDS 55.0%
TAGTTCTCTCACTGCCTGCC+AGG - Chr5:34969937-34969956 None:intergenic 55.0%
!! AGAAGGCTCTGGAGCTCTAG+AGG + Chr5:34967583-34967602 MsG0580026340.01.T01:CDS 55.0%
!! AGATTGTTCCGGCTCGGAAG+TGG + Chr5:34969961-34969980 MsG0580026340.01.T01:CDS 55.0%
!! AGCTCTAGAGGAACTCGAGG+AGG + Chr5:34967595-34967614 MsG0580026340.01.T01:CDS 55.0%
!! TGGAGCTCTAGAGGAACTCG+AGG + Chr5:34967592-34967611 MsG0580026340.01.T01:CDS 55.0%
CTGGCACCTGCCAGTCATCT+AGG - Chr5:34969101-34969120 None:intergenic 60.0%
!! TTCCAGCTCAAGGAGCACCG+TGG + Chr5:34967128-34967147 MsG0580026340.01.T01:CDS 60.0%
AGCCACGGTGCTCCTTGAGC+TGG - Chr5:34967133-34967152 None:intergenic 65.0%
GACACGTGTCAGCCAGCCAG+AGG - Chr5:34969067-34969086 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 34964435 34970465 34964435 ID=MsG0580026340.01;Name=MsG0580026340.01
Chr5 mRNA 34964435 34970465 34964435 ID=MsG0580026340.01.T01;Parent=MsG0580026340.01;Name=MsG0580026340.01.T01;_AED=0.36;_eAED=0.45;_QI=98|0.7|0.81|1|1|1|11|287|442
Chr5 exon 34964435 34964667 34964435 ID=MsG0580026340.01.T01:exon:25631;Parent=MsG0580026340.01.T01
Chr5 exon 34965917 34966134 34965917 ID=MsG0580026340.01.T01:exon:25632;Parent=MsG0580026340.01.T01
Chr5 exon 34966602 34966716 34966602 ID=MsG0580026340.01.T01:exon:25633;Parent=MsG0580026340.01.T01
Chr5 exon 34967104 34967193 34967104 ID=MsG0580026340.01.T01:exon:25634;Parent=MsG0580026340.01.T01
Chr5 exon 34967545 34967715 34967545 ID=MsG0580026340.01.T01:exon:25635;Parent=MsG0580026340.01.T01
Chr5 exon 34967804 34967923 34967804 ID=MsG0580026340.01.T01:exon:25636;Parent=MsG0580026340.01.T01
Chr5 exon 34968190 34968300 34968190 ID=MsG0580026340.01.T01:exon:25637;Parent=MsG0580026340.01.T01
Chr5 exon 34969006 34969128 34969006 ID=MsG0580026340.01.T01:exon:25638;Parent=MsG0580026340.01.T01
Chr5 exon 34969231 34969335 34969231 ID=MsG0580026340.01.T01:exon:25639;Parent=MsG0580026340.01.T01
Chr5 exon 34969942 34970023 34969942 ID=MsG0580026340.01.T01:exon:25640;Parent=MsG0580026340.01.T01
Chr5 exon 34970120 34970465 34970120 ID=MsG0580026340.01.T01:exon:25641;Parent=MsG0580026340.01.T01
Chr5 five_prime_UTR 34964435 34964532 34964435 ID=MsG0580026340.01.T01:five_prime_utr;Parent=MsG0580026340.01.T01
Chr5 CDS 34964533 34964667 34964533 ID=MsG0580026340.01.T01:cds;Parent=MsG0580026340.01.T01
Chr5 CDS 34965917 34966134 34965917 ID=MsG0580026340.01.T01:cds;Parent=MsG0580026340.01.T01
Chr5 CDS 34966602 34966716 34966602 ID=MsG0580026340.01.T01:cds;Parent=MsG0580026340.01.T01
Chr5 CDS 34967104 34967193 34967104 ID=MsG0580026340.01.T01:cds;Parent=MsG0580026340.01.T01
Chr5 CDS 34967545 34967715 34967545 ID=MsG0580026340.01.T01:cds;Parent=MsG0580026340.01.T01
Chr5 CDS 34967804 34967923 34967804 ID=MsG0580026340.01.T01:cds;Parent=MsG0580026340.01.T01
Chr5 CDS 34968190 34968300 34968190 ID=MsG0580026340.01.T01:cds;Parent=MsG0580026340.01.T01
Chr5 CDS 34969006 34969128 34969006 ID=MsG0580026340.01.T01:cds;Parent=MsG0580026340.01.T01
Chr5 CDS 34969231 34969335 34969231 ID=MsG0580026340.01.T01:cds;Parent=MsG0580026340.01.T01
Chr5 CDS 34969942 34970023 34969942 ID=MsG0580026340.01.T01:cds;Parent=MsG0580026340.01.T01
Chr5 CDS 34970120 34970178 34970120 ID=MsG0580026340.01.T01:cds;Parent=MsG0580026340.01.T01
Chr5 three_prime_UTR 34970179 34970465 34970179 ID=MsG0580026340.01.T01:three_prime_utr;Parent=MsG0580026340.01.T01
Gene Sequence

>MsG0580026340.01.T01

ATGGAACACGATGAAGACGAAGAACCACCTCTTGCTGTTGAGATTCAACAACATAACAACGATGAATCCATTTCTCAACAATCTTCTGTTGGTGTCACTCTCATCACTGGTTATCTTGGTGCTGGAAAATCCACGTTAGTGAATCATATATTGAACTCTCAACATGGGAAGAGGATTGCTGTGATATTGAATGAGTTTGGTGAGGAAATTGGAGTGGAAAGAGCATTGATAAATGAAGGGGAAAGTGGTGCAGTTGTTGAAGAATGGGTTGAACTTGCTAATGGCTGTATTTGTTGCACTGTTAAGCATAGTTTGGTTCAAGCCCTTGAGCAGCTTGTGCAGAGAAAAGAAAGGCTAGACCATATATTGCTGGAAACTACTGGTGTGGCTAATCCAGCACCTTTGGCATCTATTCTTTGGTTGGATGAACAGTTGGAATCTGATGTAAAGCTTGATTCTATCGTCACCGTAGTAGATGCCAAAAATGTTCGCTTCCAGCTCAAGGAGCACCGTGGCTCATCTTCATTTCCTGAAGCATATTTTCAGATAGCATTTGCGGACATTGTAATTCTTAACAAGGTTGATTTGGTATCTGCAGAAGGCTCTGGAGCTCTAGAGGAACTCGAGGAGGAAATCCATAACATTAACACACTCGTAGAGATAATTCATTCTGTGCGATGTCAAGTTGACTTATCTAAGATATTGAACCGCCACGCTTACGATACTGCACATGCTGCACATTTAGAGGCATTGTTAGAAGAAAGTCGTTCTTTGTCTACTAAAAAGCTTCATGATAGTGGCGTGAGAACCATATGCATCTCCGAGACAGGAACAGTTGATCTTGATAAGACTCGTATATGGCTAGAGGAGATTCTTTGGGAGAAGAAATATGATATGGATGTATACCGTTGCAAAGGAGTCTTGAATGTTCAAAGCTCTGATGAATTGCATACTTTGCAGAATGATTTCTCAGTTAGTTACATGAGTTCGAAGAGTATTTATAGGAATAAGCTAACTGCCTCTGGCTGGCTGACACGTGTCAGTCAGCAACTCCTAGATGACTGGCAGGTGCCAGATAACACAGTATTGTATAAGAGGAATTTCAACTCTATTGCTAATTTCTGGATATTCATATTTGAGTTGAAAACAAAATGTCCAGATTCATCTCTAATTAAAGAGAAACAAAAAGCAGTGAGAGAACTATATGAGATTGTTCCGGCTCGGAAGTGGAAGAAAGAAGAAAACAGGATGAATAAGATAGTATTTATAGGTCATAATCTGAAAGAAGATGTTCTAATCAATTCCTTGAAAGCTCTTGCAACCTGTTAG

Protein sequence

>MsG0580026340.01.T01

MEHDEDEEPPLAVEIQQHNNDESISQQSSVGVTLITGYLGAGKSTLVNHILNSQHGKRIAVILNEFGEEIGVERALINEGESGAVVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGVANPAPLASILWLDEQLESDVKLDSIVTVVDAKNVRFQLKEHRGSSSFPEAYFQIAFADIVILNKVDLVSAEGSGALEELEEEIHNINTLVEIIHSVRCQVDLSKILNRHAYDTAHAAHLEALLEESRSLSTKKLHDSGVRTICISETGTVDLDKTRIWLEEILWEKKYDMDVYRCKGVLNVQSSDELHTLQNDFSVSYMSSKSIYRNKLTASGWLTRVSQQLLDDWQVPDNTVLYKRNFNSIANFWIFIFELKTKCPDSSLIKEKQKAVRELYEIVPARKWKKEENRMNKIVFIGHNLKEDVLINSLKALATC*