Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146090 | XP_003589236.1 | 98.561 | 417 | 6 | 0 | 1 | 417 | 1 | 417 | 0.0 | 852 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146090 | sp|O48723|PLP2_ARATH | 66.329 | 395 | 128 | 4 | 12 | 405 | 10 | 400 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146090 | G7I4H1 | 98.561 | 417 | 6 | 0 | 1 | 417 | 1 | 417 | 0.0 | 852 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026420 | Msa0146090 | 0.964982 | 5.115227e-124 | -8.615850e-47 |
| Msa0034540 | Msa0146090 | 0.802729 | 4.886422e-49 | -8.615850e-47 |
| Msa0035790 | Msa0146090 | 0.820005 | 8.620612e-53 | -8.615850e-47 |
| Msa0039890 | Msa0146090 | 0.800556 | 1.363399e-48 | -8.615850e-47 |
| Msa0046680 | Msa0146090 | 0.843608 | 1.261893e-58 | -8.615850e-47 |
| Msa0051480 | Msa0146090 | 0.825870 | 3.702663e-54 | -8.615850e-47 |
| Msa0051620 | Msa0146090 | 0.986728 | 9.108564e-168 | -8.615850e-47 |
| Msa0051730 | Msa0146090 | 0.981825 | 1.532599e-153 | -8.615850e-47 |
| Msa0064990 | Msa0146090 | 0.804835 | 1.785307e-49 | -8.615850e-47 |
| Msa0074860 | Msa0146090 | -0.810869 | 9.302733e-51 | -8.615850e-47 |
| Msa0083890 | Msa0146090 | 0.826972 | 2.022757e-54 | -8.615850e-47 |
| Msa0107830 | Msa0146090 | 0.809139 | 2.192748e-50 | -8.615850e-47 |
| Msa0129290 | Msa0146090 | 0.825791 | 3.866766e-54 | -8.615850e-47 |
| Msa0143640 | Msa0146090 | 0.870848 | 1.070195e-66 | -8.615850e-47 |
| Msa0146090 | Msa0146200 | 0.827379 | 1.616395e-54 | -8.615850e-47 |
| Msa0146090 | Msa0150620 | 0.802686 | 4.985981e-49 | -8.615850e-47 |
| Msa0146090 | Msa0162680 | 0.830050 | 3.652484e-55 | -8.615850e-47 |
| Msa0146090 | Msa0163540 | -0.802801 | 4.722682e-49 | -8.615850e-47 |
| Msa0146090 | Msa0167160 | -0.802090 | 6.615527e-49 | -8.615850e-47 |
| Msa0146090 | Msa0180820 | 0.806984 | 6.308814e-50 | -8.615850e-47 |
| Msa0146090 | Msa0185100 | 0.811264 | 7.636758e-51 | -8.615850e-47 |
| Msa0146090 | Msa0186240 | 0.801452 | 8.944390e-49 | -8.615850e-47 |
| Msa0146090 | Msa0191470 | 0.817629 | 2.985864e-52 | -8.615850e-47 |
| Msa0146090 | Msa0194370 | -0.802050 | 6.741582e-49 | -8.615850e-47 |
| Msa0146090 | Msa0202380 | 0.813868 | 2.058074e-51 | -8.615850e-47 |
| Msa0146090 | Msa0219720 | -0.804722 | 1.884878e-49 | -8.615850e-47 |
| Msa0146090 | Msa0224210 | 0.802471 | 5.523514e-49 | -8.615850e-47 |
| Msa0146090 | Msa0232160 | -0.814108 | 1.822271e-51 | -8.615850e-47 |
| Msa0146090 | Msa0246140 | 0.855177 | 7.513057e-62 | -8.615850e-47 |
| Msa0146090 | Msa0267700 | 0.839591 | 1.445635e-57 | -8.615850e-47 |
| Msa0146090 | Msa0271700 | 0.804159 | 2.468851e-49 | -8.615850e-47 |
| Msa0146090 | Msa0284730 | 0.808575 | 2.895698e-50 | -8.615850e-47 |
| Msa0146090 | Msa0306310 | 0.812445 | 4.224914e-51 | -8.615850e-47 |
| Msa0146090 | Msa0310260 | -0.822362 | 2.466518e-53 | -8.615850e-47 |
| Msa0146090 | Msa0310270 | -0.804440 | 2.157736e-49 | -8.615850e-47 |
| Msa0146090 | Msa0316230 | 0.808125 | 3.611896e-50 | -8.615850e-47 |
| Msa0146090 | Msa0319680 | 0.821663 | 3.582490e-53 | -8.615850e-47 |
| Msa0146090 | Msa0324810 | 0.826360 | 2.831414e-54 | -8.615850e-47 |
| Msa0146090 | Msa0332360 | 0.818630 | 1.773147e-52 | -8.615850e-47 |
| Msa0146090 | Msa0336550 | -0.811128 | 8.175582e-51 | -8.615850e-47 |
| Msa0146090 | Msa0345980 | 0.835641 | 1.490718e-56 | -8.615850e-47 |
| Msa0146090 | Msa0346170 | 0.807325 | 5.341867e-50 | -8.615850e-47 |
| Msa0146090 | Msa0353010 | 0.819700 | 1.012094e-52 | -8.615850e-47 |
| Msa0146090 | Msa0378320 | 0.854311 | 1.339765e-61 | -8.615850e-47 |
| Msa0146090 | Msa0385320 | 0.803569 | 3.274978e-49 | -8.615850e-47 |
| Msa0146090 | Msa0390200 | 0.811849 | 5.699640e-51 | -8.615850e-47 |
| Msa0146090 | Msa0390790 | 0.803809 | 2.919582e-49 | -8.615850e-47 |
| Msa0146090 | Msa0393100 | 0.842040 | 3.295607e-58 | -8.615850e-47 |
| Msa0146090 | Msa0402800 | 0.851600 | 7.988131e-61 | -8.615850e-47 |
| Msa0146090 | Msa0405210 | 0.803346 | 3.642764e-49 | -8.615850e-47 |
| Msa0146090 | Msa0421080 | 0.827495 | 1.516211e-54 | -8.615850e-47 |
| Msa0146090 | Msa0427230 | -0.800929 | 1.144376e-48 | -8.615850e-47 |
| Msa0146090 | Msa0427660 | 0.848204 | 7.115297e-60 | -8.615850e-47 |
| Msa0146090 | Msa0438070 | 0.826355 | 2.839302e-54 | -8.615850e-47 |
| Msa0146090 | Msa0447160 | 0.822923 | 1.826577e-53 | -8.615850e-47 |
| Msa0146090 | Msa0449620 | 0.854767 | 9.886889e-62 | -8.615850e-47 |
| Msa0146090 | Msa0466850 | 0.845405 | 4.144435e-59 | -8.615850e-47 |
| Msa0146090 | Msa0476440 | -0.812930 | 3.309125e-51 | -8.615850e-47 |
| Msa0146090 | Msa0480530 | 0.843749 | 1.156957e-58 | -8.615850e-47 |
| Msa0146090 | Msa0480540 | 0.869021 | 4.230436e-66 | -8.615850e-47 |
| Msa0146090 | Msa0480550 | 0.873115 | 1.887735e-67 | -8.615850e-47 |
| Msa0146090 | Msa0481770 | 0.837075 | 6.435961e-57 | -8.615850e-47 |
| Msa0146090 | Msa0488580 | 0.833230 | 6.009508e-56 | -8.615850e-47 |
| Msa0146090 | Msa0493870 | 0.829099 | 6.219669e-55 | -8.615850e-47 |
| Msa0146090 | Msa0497860 | 0.856577 | 2.927895e-62 | -8.615850e-47 |
| Msa0146090 | Msa0500440 | 0.807393 | 5.166016e-50 | -8.615850e-47 |
| Msa0146090 | Msa0500770 | 0.828432 | 9.021705e-55 | -8.615850e-47 |
| Msa0146090 | Msa0508160 | 0.831784 | 1.371598e-55 | -8.615850e-47 |
| Msa0146090 | Msa0510870 | 0.803908 | 2.784282e-49 | -8.615850e-47 |
| Msa0146090 | Msa0513670 | 0.848641 | 5.385041e-60 | -8.615850e-47 |
| Msa0146090 | Msa0518490 | 0.848624 | 5.443776e-60 | -8.615850e-47 |
| Msa0146090 | Msa0522170 | 0.803049 | 4.196775e-49 | -8.615850e-47 |
| Msa0146090 | Msa0526840 | -0.818396 | 2.003360e-52 | -8.615850e-47 |
| Msa0146090 | Msa0537210 | 0.809175 | 2.154362e-50 | -8.615850e-47 |
| Msa0146090 | Msa0548790 | 0.802602 | 5.189869e-49 | -8.615850e-47 |
| Msa0146090 | Msa0550980 | -0.801760 | 7.733171e-49 | -8.615850e-47 |
| Msa0146090 | Msa0554770 | -0.801630 | 8.225570e-49 | -8.615850e-47 |
| Msa0146090 | Msa0559440 | -0.802507 | 5.429177e-49 | -8.615850e-47 |
| Msa0146090 | Msa0560280 | 0.810421 | 1.162566e-50 | -8.615850e-47 |
| Msa0146090 | Msa0561110 | 0.830670 | 2.577285e-55 | -8.615850e-47 |
| Msa0146090 | Msa0565120 | 0.803445 | 3.473741e-49 | -8.615850e-47 |
| Msa0146090 | Msa0565180 | 0.826146 | 3.183645e-54 | -8.615850e-47 |
| Msa0146090 | Msa0566530 | 0.825974 | 3.498818e-54 | -8.615850e-47 |
| Msa0146090 | Msa0568110 | 0.816869 | 4.426786e-52 | -8.615850e-47 |
| Msa0146090 | Msa0570460 | 0.836359 | 9.801598e-57 | -8.615850e-47 |
| Msa0146090 | Msa0572700 | 0.810459 | 1.140440e-50 | -8.615850e-47 |
| Msa0146090 | Msa0580840 | 0.865891 | 4.250539e-65 | -8.615850e-47 |
| Msa0146090 | Msa0585060 | 0.862661 | 4.325959e-64 | -8.615850e-47 |
| Msa0146090 | Msa0593600 | 0.816325 | 5.860904e-52 | -8.615850e-47 |
| Msa0146090 | Msa0622800 | -0.809014 | 2.332814e-50 | -8.615850e-47 |
| Msa0146090 | Msa0645380 | 0.815032 | 1.137848e-51 | -8.615850e-47 |
| Msa0146090 | Msa0651820 | 0.810157 | 1.325101e-50 | -8.615850e-47 |
| Msa0146090 | Msa0657260 | 0.809440 | 1.889936e-50 | -8.615850e-47 |
| Msa0146090 | Msa0657340 | 0.812091 | 5.047152e-51 | -8.615850e-47 |
| Msa0146090 | Msa0685810 | -0.803785 | 2.953203e-49 | -8.615850e-47 |
| Msa0146090 | Msa0694320 | 0.801010 | 1.101389e-48 | -8.615850e-47 |
| Msa0146090 | Msa0701430 | 0.842094 | 3.189891e-58 | -8.615850e-47 |
| Msa0146090 | Msa0701490 | 0.831112 | 2.007771e-55 | -8.615850e-47 |
| Msa0146090 | Msa0701560 | 0.827274 | 1.712377e-54 | -8.615850e-47 |
| Msa0146090 | Msa0704560 | 0.828592 | 8.252853e-55 | -8.615850e-47 |
| Msa0146090 | Msa0716620 | 0.843895 | 1.057237e-58 | -8.615850e-47 |
| Msa0146090 | Msa0740630 | 0.800204 | 1.608641e-48 | -8.615850e-47 |
| Msa0146090 | Msa0744540 | 0.850172 | 2.016111e-60 | -8.615850e-47 |
| Msa0146090 | Msa0744550 | 0.867303 | 1.512127e-65 | -8.615850e-47 |
| Msa0146090 | Msa0744560 | 0.877249 | 7.313581e-69 | -8.615850e-47 |
| Msa0146090 | Msa0746340 | 0.843994 | 9.950523e-59 | -8.615850e-47 |
| Msa0146090 | Msa0753410 | 0.814869 | 1.236912e-51 | -8.615850e-47 |
| Msa0146090 | Msa0772350 | 0.812382 | 4.359585e-51 | -8.615850e-47 |
| Msa0146090 | Msa0794200 | 0.801480 | 8.825844e-49 | -8.615850e-47 |
| Msa0146090 | Msa0795320 | 0.831494 | 1.617342e-55 | -8.615850e-47 |
| Msa0146090 | Msa0806910 | 0.814577 | 1.435035e-51 | -8.615850e-47 |
| Msa0146090 | Msa0816630 | 0.803373 | 3.595207e-49 | -8.615850e-47 |
| Msa0146090 | Msa0820880 | 0.804545 | 2.052360e-49 | -8.615850e-47 |
| Msa0146090 | Msa0826360 | 0.846186 | 2.544813e-59 | -8.615850e-47 |
| Msa0146090 | Msa0826370 | 0.860088 | 2.636177e-63 | -8.615850e-47 |
| Msa0146090 | Msa0826380 | 0.849549 | 3.011220e-60 | -8.615850e-47 |
| Msa0146090 | Msa0826450 | 0.854460 | 1.212590e-61 | -8.615850e-47 |
| Msa0146090 | Msa0829990 | 0.804064 | 2.584685e-49 | -8.615850e-47 |
| Msa0146090 | Msa0837550 | 0.809240 | 2.086880e-50 | -8.615850e-47 |
| Msa0146090 | Msa0843740 | 0.806760 | 7.034830e-50 | -8.615850e-47 |
| Msa0146090 | Msa0863940 | 0.805056 | 1.604894e-49 | -8.615850e-47 |
| Msa0146090 | Msa0865810 | 0.870290 | 1.631720e-66 | -8.615850e-47 |
| Msa0146090 | Msa0865820 | 0.848490 | 5.930265e-60 | -8.615850e-47 |
| Msa0146090 | Msa0865830 | 0.858927 | 5.884173e-63 | -8.615850e-47 |
| Msa0146090 | Msa0874750 | 0.817125 | 3.878368e-52 | -8.615850e-47 |
| Msa0146090 | Msa0879940 | -0.806265 | 8.945009e-50 | -8.615850e-47 |
| Msa0146090 | Msa0906680 | 0.802500 | 5.447384e-49 | -8.615850e-47 |
| Msa0146090 | Msa0921790 | 0.832128 | 1.127839e-55 | -8.615850e-47 |
| Msa0146090 | Msa0933050 | -0.807437 | 5.057934e-50 | -8.615850e-47 |
| Msa0146090 | Msa0945320 | 0.800693 | 1.278487e-48 | -8.615850e-47 |
| Msa0146090 | Msa0960580 | 0.830310 | 3.156376e-55 | -8.615850e-47 |
| Msa0146090 | Msa0970410 | 0.826698 | 2.351882e-54 | -8.615850e-47 |
| Msa0146090 | Msa0970940 | -0.801301 | 9.607102e-49 | -8.615850e-47 |
| Msa0146090 | Msa0976400 | 0.834494 | 2.901508e-56 | -8.615850e-47 |
| Msa0146090 | Msa1003920 | 0.806536 | 7.841781e-50 | -8.615850e-47 |
| Msa0146090 | Msa1018210 | -0.821415 | 4.087217e-53 | -8.615850e-47 |
| Msa0146090 | Msa1023430 | 0.811264 | 7.637701e-51 | -8.615850e-47 |
| Msa0146090 | Msa1027910 | 0.804865 | 1.759575e-49 | -8.615850e-47 |
| Msa0146090 | Msa1030210 | 0.834155 | 3.528976e-56 | -8.615850e-47 |
| Msa0146090 | Msa1031780 | 0.852299 | 5.058459e-61 | -8.615850e-47 |
| Msa0146090 | Msa1035050 | 0.827259 | 1.726968e-54 | -8.615850e-47 |
| Msa0146090 | Msa1041250 | 0.801620 | 8.263813e-49 | -8.615850e-47 |
| Msa0146090 | Msa1057940 | -0.802086 | 6.627990e-49 | -8.615850e-47 |
| Msa0146090 | Msa1061840 | 0.826263 | 2.985728e-54 | -8.615850e-47 |
| Msa0146090 | Msa1069250 | 0.847805 | 9.165407e-60 | -8.615850e-47 |
| Msa0146090 | Msa1071350 | 0.813263 | 2.797180e-51 | -8.615850e-47 |
| Msa0146090 | Msa1075090 | 0.815592 | 8.541618e-52 | -8.615850e-47 |
| Msa0146090 | Msa1080650 | 0.802968 | 4.361024e-49 | -8.615850e-47 |
| Msa0146090 | Msa1084340 | -0.803278 | 3.762673e-49 | -8.615850e-47 |
| Msa0146090 | Msa1095590 | 0.801651 | 8.142745e-49 | -8.615850e-47 |
| Msa0146090 | Msa1107510 | 0.822615 | 2.154343e-53 | -8.615850e-47 |
| Msa0146090 | Msa1110900 | 0.823258 | 1.525684e-53 | -8.615850e-47 |
| Msa0146090 | Msa1113090 | 0.807066 | 6.060279e-50 | -8.615850e-47 |
| Msa0146090 | Msa1118720 | 0.834708 | 2.564066e-56 | -8.615850e-47 |
| Msa0146090 | Msa1120580 | 0.818255 | 2.155929e-52 | -8.615850e-47 |
| Msa0146090 | Msa1142390 | 0.819886 | 9.174848e-53 | -8.615850e-47 |
| Msa0146090 | Msa1151070 | 0.812378 | 4.370107e-51 | -8.615850e-47 |
| Msa0146090 | Msa1157110 | 0.810024 | 1.416038e-50 | -8.615850e-47 |
| Msa0146090 | Msa1157200 | 0.821031 | 5.012388e-53 | -8.615850e-47 |
| Msa0146090 | Msa1164230 | 0.806831 | 6.795479e-50 | -8.615850e-47 |
| Msa0146090 | Msa1165670 | 0.804406 | 2.193873e-49 | -8.615850e-47 |
| Msa0146090 | Msa1174280 | 0.837324 | 5.560107e-57 | -8.615850e-47 |
| Msa0146090 | Msa1179340 | 0.805338 | 1.400952e-49 | -8.615850e-47 |
| Msa0146090 | Msa1202110 | 0.836316 | 1.004896e-56 | -8.615850e-47 |
| Msa0146090 | Msa1211610 | 0.859240 | 4.743462e-63 | -8.615850e-47 |
| Msa0146090 | Msa1223560 | 0.846597 | 1.964942e-59 | -8.615850e-47 |
| Msa0146090 | Msa1224510 | 0.844643 | 6.657707e-59 | -8.615850e-47 |
| Msa0146090 | Msa1235960 | -0.815391 | 9.471071e-52 | -8.615850e-47 |
| Msa0146090 | Msa1235990 | -0.819498 | 1.125470e-52 | -8.615850e-47 |
| Msa0146090 | Msa1254870 | 0.836019 | 1.195916e-56 | -8.615850e-47 |
| Msa0146090 | Msa1256600 | 0.830111 | 3.530528e-55 | -8.615850e-47 |
| Msa0146090 | Msa1262540 | 0.811854 | 5.683385e-51 | -8.615850e-47 |
| Msa0146090 | Msa1263500 | 0.833317 | 5.717422e-56 | -8.615850e-47 |
| Msa0146090 | Msa1299480 | 0.864517 | 1.148781e-64 | -8.615850e-47 |
| Msa0146090 | Msa1313720 | 0.811420 | 7.063194e-51 | -8.615850e-47 |
| Msa0146090 | Msa1315880 | -0.802750 | 4.837189e-49 | -8.615850e-47 |
| Msa0146090 | Msa1316090 | -0.808703 | 2.718637e-50 | -8.615850e-47 |
| Msa0146090 | Msa1322180 | 0.827552 | 1.469096e-54 | -8.615850e-47 |
| Msa0146090 | Msa1328430 | 0.834851 | 2.359386e-56 | -8.615850e-47 |
| Msa0146090 | Msa1331950 | 0.807755 | 4.328481e-50 | -8.615850e-47 |
| Msa0146090 | Msa1333700 | 0.840579 | 7.986109e-58 | -8.615850e-47 |
| Msa0146090 | Msa1344870 | -0.806566 | 7.730842e-50 | -8.615850e-47 |
| Msa0146090 | Msa1348340 | -0.810686 | 1.018868e-50 | -8.615850e-47 |
| Msa0146090 | Msa1349830 | 0.854670 | 1.054387e-61 | -8.615850e-47 |
| Msa0146090 | Msa1359770 | 0.818343 | 2.059573e-52 | -8.615850e-47 |
| Msa0146090 | Msa1366480 | 0.809362 | 1.964825e-50 | -8.615850e-47 |
| Msa0146090 | Msa1372470 | -0.826516 | 2.598949e-54 | -8.615850e-47 |
| Msa0146090 | Msa1377050 | 0.821537 | 3.829536e-53 | -8.615850e-47 |
| Msa0146090 | Msa1382740 | 0.843561 | 1.299006e-58 | -8.615850e-47 |
| Msa0146090 | Msa1387610 | 0.843852 | 1.086051e-58 | -8.615850e-47 |
| Msa0146090 | Msa1389630 | 0.801669 | 8.072158e-49 | -8.615850e-47 |
| Msa0146090 | Msa1396160 | 0.826136 | 3.201597e-54 | -8.615850e-47 |
| Msa0146090 | Msa1398120 | 0.848407 | 6.251968e-60 | -8.615850e-47 |
| Msa0146090 | Msa1399930 | 0.813726 | 2.212560e-51 | -8.615850e-47 |
| Msa0146090 | Msa1401110 | 0.824328 | 8.565790e-54 | -8.615850e-47 |
| Msa0146090 | Msa1410500 | -0.800143 | 1.654839e-48 | -8.615850e-47 |
| Msa0146090 | Msa1427000 | 0.833122 | 6.393932e-56 | -8.615850e-47 |
| Msa0146090 | Msa1432180 | 0.806413 | 8.327696e-50 | -8.615850e-47 |
| Msa0146090 | Msa1434850 | -0.817390 | 3.380550e-52 | -8.615850e-47 |
| Msa0146090 | Msa1434860 | -0.813074 | 3.076859e-51 | -8.615850e-47 |
| Msa0146090 | Msa1435320 | 0.806936 | 6.455482e-50 | -8.615850e-47 |
| Msa0146090 | Msa1439780 | 0.828516 | 8.607124e-55 | -8.615850e-47 |
| Msa0146090 | Msa1443400 | 0.802606 | 5.179052e-49 | -8.615850e-47 |
| Msa0146090 | Msa1448040 | 0.803471 | 3.431595e-49 | -8.615850e-47 |
| Msa0146090 | Msa1449470 | 0.848173 | 7.255311e-60 | -8.615850e-47 |
| Msa0146090 | Msa1453600 | 0.831992 | 1.218581e-55 | -8.615850e-47 |
| Msa0146090 | Msa1459920 | 0.842050 | 3.275478e-58 | -8.615850e-47 |
| Msa0146090 | Msa1459930 | 0.849698 | 2.736249e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146090 | MtrunA17_Chr1g0153781 | 98.561 | 417 | 6 | 0 | 1 | 417 | 1 | 417 | 0.0 | 852 |
| Msa0146090 | MtrunA17_Chr3g0133691 | 78.164 | 403 | 86 | 2 | 5 | 407 | 4 | 404 | 0.0 | 643 |
| Msa0146090 | MtrunA17_Chr3g0133681 | 76.427 | 403 | 93 | 2 | 5 | 407 | 4 | 404 | 0.0 | 633 |
| Msa0146090 | MtrunA17_Chr5g0402441 | 57.560 | 377 | 155 | 3 | 19 | 394 | 14 | 386 | 1.04e-158 | 453 |
| Msa0146090 | MtrunA17_Chr5g0402451 | 55.076 | 394 | 170 | 4 | 9 | 400 | 1 | 389 | 1.57e-158 | 452 |
| Msa0146090 | MtrunA17_Chr8g0335581 | 43.237 | 414 | 195 | 13 | 11 | 410 | 11 | 398 | 3.01e-100 | 304 |
| Msa0146090 | MtrunA17_Chr8g0335651 | 46.329 | 395 | 174 | 8 | 10 | 399 | 22 | 383 | 1.20e-94 | 290 |
| Msa0146090 | MtrunA17_Chr8g0335611 | 42.569 | 397 | 199 | 11 | 11 | 399 | 22 | 397 | 9.45e-94 | 288 |
| Msa0146090 | MtrunA17_Chr8g0335621 | 42.065 | 397 | 201 | 11 | 11 | 399 | 53 | 428 | 3.15e-92 | 285 |
| Msa0146090 | MtrunA17_Chr8g0335631 | 42.998 | 407 | 201 | 11 | 11 | 410 | 22 | 404 | 2.94e-88 | 274 |
| Msa0146090 | MtrunA17_Chr8g0335591 | 40.441 | 408 | 212 | 11 | 10 | 409 | 21 | 405 | 4.69e-85 | 266 |
| Msa0146090 | MtrunA17_Chr1g0199801 | 28.501 | 407 | 253 | 14 | 21 | 412 | 75 | 458 | 2.70e-37 | 141 |
| Msa0146090 | MtrunA17_Chr7g0259871 | 28.736 | 261 | 147 | 9 | 23 | 269 | 32 | 267 | 3.70e-25 | 105 |
| Msa0146090 | MtrunA17_Chr1g0185551 | 25.513 | 341 | 217 | 12 | 23 | 358 | 32 | 340 | 4.81e-25 | 105 |
| Msa0146090 | MtrunA17_Chr2g0292051 | 27.190 | 331 | 189 | 12 | 6 | 330 | 54 | 338 | 1.46e-20 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146090 | AT2G26560.1 | 66.329 | 395 | 128 | 4 | 12 | 405 | 10 | 400 | 0.0 | 527 |
| Msa0146090 | AT4G37070.2 | 59.591 | 391 | 156 | 2 | 13 | 403 | 11 | 399 | 5.19e-169 | 480 |
| Msa0146090 | AT4G37050.1 | 60.804 | 398 | 148 | 2 | 14 | 404 | 28 | 424 | 3.20e-168 | 478 |
| Msa0146090 | AT4G37060.1 | 57.468 | 395 | 166 | 2 | 14 | 408 | 12 | 404 | 9.62e-165 | 469 |
| Msa0146090 | AT4G37070.3 | 59.200 | 375 | 151 | 2 | 13 | 387 | 11 | 383 | 1.58e-160 | 457 |
| Msa0146090 | AT4G37070.1 | 59.200 | 375 | 151 | 2 | 13 | 387 | 11 | 383 | 1.58e-160 | 457 |
| Msa0146090 | AT4G37060.2 | 53.286 | 426 | 166 | 3 | 14 | 408 | 12 | 435 | 3.72e-158 | 454 |
| Msa0146090 | AT4G37070.4 | 57.600 | 375 | 146 | 3 | 13 | 387 | 11 | 372 | 1.89e-152 | 436 |
| Msa0146090 | AT5G43590.1 | 53.077 | 390 | 172 | 4 | 13 | 399 | 6 | 387 | 7.94e-130 | 380 |
| Msa0146090 | AT5G43590.2 | 53.077 | 390 | 172 | 4 | 13 | 399 | 73 | 454 | 5.75e-129 | 380 |
| Msa0146090 | AT3G54950.1 | 27.569 | 399 | 258 | 11 | 21 | 414 | 98 | 470 | 1.42e-35 | 137 |
| Msa0146090 | AT4G29800.1 | 28.256 | 407 | 255 | 14 | 21 | 412 | 121 | 505 | 1.92e-35 | 137 |
| Msa0146090 | AT4G29800.2 | 28.186 | 408 | 255 | 14 | 21 | 412 | 121 | 506 | 2.80e-35 | 137 |
| Msa0146090 | AT2G39220.1 | 29.639 | 388 | 243 | 15 | 21 | 402 | 108 | 471 | 1.75e-34 | 134 |
| Msa0146090 | AT3G63200.1 | 28.707 | 317 | 192 | 10 | 23 | 333 | 32 | 320 | 1.12e-30 | 122 |
Find 89 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTATGGTTTATATATTTC+AGG | 0.196146 | 1_4:+5840866 | None:intergenic |
| AGGGCAATGTTCAAGGTAAA+AGG | 0.209370 | 1_4:+5839662 | None:intergenic |
| TTAATAAATTCTCACCAATT+TGG | 0.220880 | 1_4:+5837568 | None:intergenic |
| TGATAATTACCTTCGAATTC+AGG | 0.242193 | 1_4:-5837805 | Msa0146090:intron |
| TCCAGAGTCAATTTAGAAAA+TGG | 0.281008 | 1_4:-5837534 | Msa0146090:CDS |
| TTGAAGAAACTATGCCAAAT+TGG | 0.298509 | 1_4:-5837582 | Msa0146090:CDS |
| GTAAAAGGGCTTGATATCTT+TGG | 0.318803 | 1_4:+5839677 | None:intergenic |
| GCTTCAGAGATCCCCTTGTT+TGG | 0.326246 | 1_4:-5838913 | Msa0146090:CDS |
| TACTCAATCAAGTGGTGATA+TGG | 0.328294 | 1_4:-5837871 | Msa0146090:CDS |
| CCATATTCCAGAGGCTTGAT+TGG | 0.331569 | 1_4:+5838026 | None:intergenic |
| CCAATCAAGCCTCTGGAATA+TGG | 0.340675 | 1_4:-5838026 | Msa0146090:CDS |
| GTAACCATTCTTAGTATTGA+TGG | 0.353477 | 1_4:-5840707 | Msa0146090:CDS |
| ATTCCTTGAATCTCACCTTC+AGG | 0.368436 | 1_4:-5840645 | Msa0146090:intron |
| CCAAATGGGGATTATTAGAT+TGG | 0.382105 | 1_4:-5837932 | Msa0146090:CDS |
| TGCACAAATGGCAGCCAAAT+GGG | 0.384292 | 1_4:-5837946 | Msa0146090:CDS |
| AACAAAGGCTGTATAGAGTA+TGG | 0.387465 | 1_4:+5840851 | None:intergenic |
| TTGGTTTCTCCGGTTGTTAG+TGG | 0.394804 | 1_4:+5837501 | None:intergenic |
| TTTCTTTCCAATCAAGCCTC+TGG | 0.407655 | 1_4:-5838033 | Msa0146090:CDS |
| CCAATCTAATAATCCCCATT+TGG | 0.412692 | 1_4:+5837932 | None:intergenic |
| TGAGAATTTATTAAAGAAAC+CGG | 0.414005 | 1_4:-5837559 | Msa0146090:CDS |
| AGCATCTTCATTGGTTTCTC+CGG | 0.415887 | 1_4:+5837491 | None:intergenic |
| GGCTTGATTGGAAAGAAATC+AGG | 0.418966 | 1_4:+5838038 | None:intergenic |
| CTGATCATTTCAATAGGCAC+TGG | 0.431825 | 1_4:-5837996 | Msa0146090:CDS |
| TCTTGCCTCTACTTGTGTGT+GGG | 0.432968 | 1_4:+5837295 | None:intergenic |
| CCTCTTGAGAGCATCTTCAT+TGG | 0.439200 | 1_4:+5837482 | None:intergenic |
| ATATTAATTACCTATGTTGT+GGG | 0.443069 | 1_4:+5839631 | None:intergenic |
| GCAAAGGTAATGAGATCTCT+TGG | 0.450334 | 1_4:-5839452 | Msa0146090:CDS |
| CTGCACAAATGGCAGCCAAA+TGG | 0.451475 | 1_4:-5837947 | Msa0146090:CDS |
| ACAAATAAAGATCAGGAAGC+TGG | 0.460216 | 1_4:-5838822 | Msa0146090:CDS |
| AGTATGGTTTATATATTTCA+GGG | 0.460216 | 1_4:+5840867 | None:intergenic |
| AGGAATTCAATAATTGCAGC+AGG | 0.463149 | 1_4:+5840662 | None:intergenic |
| GGGCAATGTTCAAGGTAAAA+GGG | 0.470464 | 1_4:+5839663 | None:intergenic |
| TAACCATTCTTAGTATTGAT+GGG | 0.470961 | 1_4:-5840706 | Msa0146090:CDS |
| GAGGAGTTCAATCTCATTGA+TGG | 0.474688 | 1_4:-5838792 | Msa0146090:CDS |
| GATTACTTTGATGTGATCTC+AGG | 0.483035 | 1_4:-5839771 | Msa0146090:CDS |
| CTTGGAGGACCCAAATATGA+TGG | 0.485178 | 1_4:-5839434 | Msa0146090:CDS |
| TATATTAATTACCTATGTTG+TGG | 0.490009 | 1_4:+5839630 | None:intergenic |
| CAAGTTGTTAGAGAGAAACT+TGG | 0.490786 | 1_4:-5839398 | Msa0146090:CDS |
| TTATTTGTGAAGTTGTGAGC+AGG | 0.494731 | 1_4:+5838837 | None:intergenic |
| TTGTGAGCAGGGAGATAAGT+AGG | 0.496729 | 1_4:+5838849 | None:intergenic |
| TGGTGTTTGCGCAAATAATC+CGG | 0.497493 | 1_4:-5838769 | Msa0146090:intron |
| CAAGTAGAGGCAAGAAAGCC+CGG | 0.498544 | 1_4:-5837287 | Msa0146090:CDS |
| CAATAATTGCAGCAGGGATG+AGG | 0.499347 | 1_4:+5840669 | None:intergenic |
| GGAGAGGTTCACTGCACAAA+TGG | 0.505314 | 1_4:-5837958 | Msa0146090:CDS |
| CAACTTCACAAATAAAGATC+AGG | 0.505940 | 1_4:-5838829 | Msa0146090:CDS |
| TTCTTGCCTCTACTTGTGTG+TGG | 0.506302 | 1_4:+5837294 | None:intergenic |
| TCTCTCTAACAACTTGATGA+AGG | 0.508522 | 1_4:+5839405 | None:intergenic |
| TCTAAATTGACTCTGGAGAC+CGG | 0.508962 | 1_4:+5837540 | None:intergenic |
| TGATAAGATGAGAAAATGAT+TGG | 0.523309 | 1_4:+5839308 | None:intergenic |
| ATACCTGAAGGTGAGATTCA+AGG | 0.523660 | 1_4:+5840642 | None:intergenic |
| GAAATTACATAAAATTTCGA+TGG | 0.526047 | 1_4:-5840786 | Msa0146090:exon |
| TTACCAAGTTCCCATAAGTA+GGG | 0.536098 | 1_4:+5840726 | None:intergenic |
| GTTACCAAGTTCCCATAAGT+AGG | 0.539081 | 1_4:+5840725 | None:intergenic |
| GTGATCTCAGGAACAAGTAC+AGG | 0.541512 | 1_4:-5839759 | Msa0146090:CDS |
| ATGCAGGATGATACATTGAC+AGG | 0.541552 | 1_4:-5837642 | Msa0146090:intron |
| ATTACATAAAATTTCGATGG+AGG | 0.541674 | 1_4:-5840783 | Msa0146090:exon |
| TGAATCATGAAACTAGATGC+CGG | 0.546406 | 1_4:+5837268 | None:intergenic |
| TTACATAAAATTTCGATGGA+GGG | 0.558119 | 1_4:-5840782 | Msa0146090:exon |
| GAATCATGAAACTAGATGCC+GGG | 0.560416 | 1_4:+5837269 | None:intergenic |
| TTAGATTGGCTAACACATAG+TGG | 0.560851 | 1_4:-5837918 | Msa0146090:CDS |
| TGATCATTTCAATAGGCACT+GGG | 0.562419 | 1_4:-5837995 | Msa0146090:CDS |
| TATTTGTGAAGTTGTGAGCA+GGG | 0.563364 | 1_4:+5838838 | None:intergenic |
| CTTGCCTCTACTTGTGTGTG+GGG | 0.564230 | 1_4:+5837296 | None:intergenic |
| AACCATTCTTAGTATTGATG+GGG | 0.567798 | 1_4:-5840705 | Msa0146090:CDS |
| CAAAGTCTTGATGTCAAATG+TGG | 0.569923 | 1_4:+5839334 | None:intergenic |
| ATCTGTGTGCAGGAGTTGGA+TGG | 0.573566 | 1_4:-5839813 | Msa0146090:intron |
| TTCTTCAGTAGACATTGCTA+CGG | 0.581643 | 1_4:-5837613 | Msa0146090:CDS |
| TTTATCTGGAGCAGCTAACA+TGG | 0.585474 | 1_4:+5839722 | None:intergenic |
| GAAAGTTTAGCATCCAAACA+AGG | 0.590523 | 1_4:+5838900 | None:intergenic |
| TCAGGAAGCTGGAAAAGAAG+AGG | 0.603502 | 1_4:-5838811 | Msa0146090:CDS |
| TTCAGTAGACATTGCTACGG+AGG | 0.603616 | 1_4:-5837610 | Msa0146090:CDS |
| CCAATGAAGATGCTCTCAAG+AGG | 0.607291 | 1_4:-5837482 | Msa0146090:intron |
| AGTTGGATGGTGAAGATGCA+AGG | 0.613978 | 1_4:-5839800 | Msa0146090:CDS |
| AAAGTTTAGCATCCAAACAA+GGG | 0.615469 | 1_4:+5838901 | None:intergenic |
| AGATCCCCACACACAAGTAG+AGG | 0.617675 | 1_4:-5837300 | Msa0146090:CDS |
| GCACAAATGGCAGCCAAATG+GGG | 0.620024 | 1_4:-5837945 | Msa0146090:CDS |
| AAGGTAATGAGATCTCTTGG+AGG | 0.632690 | 1_4:-5839449 | Msa0146090:CDS |
| TACCAAGTTCCCATAAGTAG+GGG | 0.646419 | 1_4:+5840727 | None:intergenic |
| ATCTCAGGAACAAGTACAGG+AGG | 0.646501 | 1_4:-5839756 | Msa0146090:CDS |
| ACCATTCTTAGTATTGATGG+GGG | 0.646720 | 1_4:-5840704 | Msa0146090:CDS |
| TGGTGCGACACTATTAGCAA+AGG | 0.647189 | 1_4:-5839468 | Msa0146090:CDS |
| GGAATTCAATAATTGCAGCA+GGG | 0.658810 | 1_4:+5840663 | None:intergenic |
| GAGTTCAATCTCATTGATGG+TGG | 0.662016 | 1_4:-5838789 | Msa0146090:CDS |
| AAATGTGGGAACAACAATGT+TGG | 0.662239 | 1_4:+5839349 | None:intergenic |
| AAGTTTAGCATCCAAACAAG+GGG | 0.668793 | 1_4:+5838902 | None:intergenic |
| ACCAAGTTCCCATAAGTAGG+GGG | 0.679072 | 1_4:+5840728 | None:intergenic |
| AAAGTCTTGATGTCAAATGT+GGG | 0.692840 | 1_4:+5839335 | None:intergenic |
| TAATGGTGTGATGAAAACAA+AGG | 0.706401 | 1_4:+5840836 | None:intergenic |
| AGAAAACGACCATATTCCAG+AGG | 0.710413 | 1_4:+5838017 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTTATATATAA+TGG | - | chr1_4:5838694-5838713 | Msa0146090:intron | 0.0% |
| !!! | TTTTTTTGAGTAAATATTAA+TGG | + | chr1_4:5837134-5837153 | None:intergenic | 10.0% |
| !! | TTCAAATAATAAAGTAATAT+TGG | + | chr1_4:5838096-5838115 | None:intergenic | 10.0% |
| !!! | TCTAAAAAATAAGTTTTTAT+TGG | - | chr1_4:5838438-5838457 | Msa0146090:intron | 10.0% |
| !! | GACAAAATATATAATTTATT+TGG | + | chr1_4:5838944-5838963 | None:intergenic | 10.0% |
| !!! | ACCTTTTTTTTTTTTTTTTA+TGG | - | chr1_4:5840180-5840199 | Msa0146090:intron | 10.0% |
| !! | ACCATAAAAAAAAAAAAAAA+AGG | + | chr1_4:5840184-5840203 | None:intergenic | 10.0% |
| !!! | ATAAAACATTTTATAATACA+TGG | + | chr1_4:5840870-5840889 | None:intergenic | 10.0% |
| !!! | TTATTTTCTTTTTGCATAAA+TGG | - | chr1_4:5837465-5837484 | Msa0146090:intron | 15.0% |
| !!! | TCATTTTATCTATATGTTTT+AGG | + | chr1_4:5837815-5837834 | None:intergenic | 15.0% |
| !!! | TAATTTATGTTTATTTTTCG+TGG | + | chr1_4:5837909-5837928 | None:intergenic | 15.0% |
| !! | TAAATTAATTAGTTGTTGAT+TGG | - | chr1_4:5839225-5839244 | Msa0146090:intron | 15.0% |
| !! | TTGTTTATTTATATATTCGT+TGG | + | chr1_4:5839307-5839326 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTATGGTAGT+AGG | - | chr1_4:5840187-5840206 | Msa0146090:intron | 15.0% |
| !! | GCACAATTATAATATAATTT+GGG | + | chr1_4:5840536-5840555 | None:intergenic | 15.0% |
| !! | TGCACAATTATAATATAATT+TGG | + | chr1_4:5840537-5840556 | None:intergenic | 15.0% |
| !! | AGTATGGTTTATATATTTCA+GGG | + | chr1_4:5837086-5837105 | None:intergenic | 20.0% |
| !! | GAAATTACATAAAATTTCGA+TGG | - | chr1_4:5837164-5837183 | Msa0146090:three_prime_UTR | 20.0% |
| !! | CATATATATAATATACCTGA+AGG | + | chr1_4:5837323-5837342 | None:intergenic | 20.0% |
| !!! | GAAAGTTTTTATATGTAAGT+TGG | - | chr1_4:5837575-5837594 | Msa0146090:CDS | 20.0% |
| !! | ATTTATTATGCAAACTATCT+TGG | - | chr1_4:5837635-5837654 | Msa0146090:CDS | 20.0% |
| !!! | AAAAAAAAGTGTCCTTTTTT+AGG | - | chr1_4:5837700-5837719 | Msa0146090:intron | 20.0% |
| !!! | AAAAAAAGTGTCCTTTTTTA+GGG | - | chr1_4:5837701-5837720 | Msa0146090:intron | 20.0% |
| !! | AGATTTAACAGTTTATACAA+CGG | - | chr1_4:5837773-5837792 | Msa0146090:intron | 20.0% |
| !! | TAGCAAAAGAAATTTAAAGA+TGG | - | chr1_4:5837927-5837946 | Msa0146090:CDS | 20.0% |
| !! | ATATTAATTACCTATGTTGT+GGG | + | chr1_4:5838322-5838341 | None:intergenic | 20.0% |
| !! | TATATTAATTACCTATGTTG+TGG | + | chr1_4:5838323-5838342 | None:intergenic | 20.0% |
| !! | CTTCTATTTGTAATTATTTG+AGG | - | chr1_4:5838375-5838394 | Msa0146090:intron | 20.0% |
| !!! | ATGTATTTTAAATCCACAAT+TGG | + | chr1_4:5838727-5838746 | None:intergenic | 20.0% |
| !!! | CTTTGAAATAAAACTATTGT+TGG | + | chr1_4:5838981-5839000 | None:intergenic | 20.0% |
| !!! | ATTTCAAACAATTTTAGTCT+AGG | + | chr1_4:5839010-5839029 | None:intergenic | 20.0% |
| !! | TCAAAATTTGTATTATGCAA+TGG | - | chr1_4:5839371-5839390 | Msa0146090:CDS | 20.0% |
| !! | TTCAAAAATAAAAGACAAAG+TGG | + | chr1_4:5839419-5839438 | None:intergenic | 20.0% |
| !!! | GGTAAAACTTTTTACATTAA+CGG | - | chr1_4:5839656-5839675 | Msa0146090:CDS | 20.0% |
| !!! | TTTGTTATTTTTTATGATCC+AGG | - | chr1_4:5839842-5839861 | Msa0146090:intron | 20.0% |
| !! | TGAGTAAAAACATCAATTAA+GGG | + | chr1_4:5840065-5840084 | None:intergenic | 20.0% |
| !! | TTGAGTAAAAACATCAATTA+AGG | + | chr1_4:5840066-5840085 | None:intergenic | 20.0% |
| !! | TGATGTACAAGATATATTAA+TGG | + | chr1_4:5840241-5840260 | None:intergenic | 20.0% |
| !! | TTAATAAATTCTCACCAATT+TGG | + | chr1_4:5840385-5840404 | None:intergenic | 20.0% |
| !! | TGAGAATTTATTAAAGAAAC+CGG | - | chr1_4:5840391-5840410 | Msa0146090:intron | 20.0% |
| !! | TTAAGATTAATTAGTAGAGA+TGG | - | chr1_4:5840494-5840513 | Msa0146090:intron | 20.0% |
| !! | CAATTATAATATAATTTGGG+TGG | + | chr1_4:5840533-5840552 | None:intergenic | 20.0% |
| !! | TATTCTATTCTAATACATTC+AGG | - | chr1_4:5840585-5840604 | Msa0146090:intron | 20.0% |
| !!! | TTTTTTTTGACAATGATACA+CGG | + | chr1_4:5840834-5840853 | None:intergenic | 20.0% |
| ! | GAGTATGGTTTATATATTTC+AGG | + | chr1_4:5837087-5837106 | None:intergenic | 25.0% |
| ! | ATTACATAAAATTTCGATGG+AGG | - | chr1_4:5837167-5837186 | Msa0146090:three_prime_UTR | 25.0% |
| ! | TTACATAAAATTTCGATGGA+GGG | - | chr1_4:5837168-5837187 | Msa0146090:three_prime_UTR | 25.0% |
| !!! | TAACCATTCTTAGTATTGAT+GGG | - | chr1_4:5837244-5837263 | Msa0146090:three_prime_UTR | 25.0% |
| !!! | TGAAAGTACCTTGTATATAT+TGG | - | chr1_4:5837341-5837360 | Msa0146090:CDS | 25.0% |
| ! | TTAAAATTCGAACTCTAAGT+AGG | + | chr1_4:5837377-5837396 | None:intergenic | 25.0% |
| !!! | AAAAAAGTGTCCTTTTTTAG+GGG | - | chr1_4:5837702-5837721 | Msa0146090:intron | 25.0% |
| ! | ACAAAAAATTCCCCTAAAAA+AGG | + | chr1_4:5837715-5837734 | None:intergenic | 25.0% |
| !! | TATGTTGTGGGAAAATTTTA+GGG | + | chr1_4:5838310-5838329 | None:intergenic | 25.0% |
| !!! | TGAGGAATTCAAGTTTTTTA+TGG | - | chr1_4:5838408-5838427 | Msa0146090:intron | 25.0% |
| !!! | ATTGGTTCAATTTTTTGTAG+AGG | - | chr1_4:5838456-5838475 | Msa0146090:intron | 25.0% |
| !! | AGGTATTTTCCATCATATTT+GGG | + | chr1_4:5838528-5838547 | None:intergenic | 25.0% |
| !!! | AAGGTATTTTCCATCATATT+TGG | + | chr1_4:5838529-5838548 | None:intergenic | 25.0% |
| ! | TGATAAGATGAGAAAATGAT+TGG | + | chr1_4:5838645-5838664 | None:intergenic | 25.0% |
| !! | AATCATTTTCTCATCTTATC+AGG | - | chr1_4:5838644-5838663 | Msa0146090:intron | 25.0% |
| !!! | TTTATTTGGTCTTAAAACTG+TGG | + | chr1_4:5838930-5838949 | None:intergenic | 25.0% |
| ! | AATTGATTATTTGCACATAC+CGG | + | chr1_4:5839203-5839222 | None:intergenic | 25.0% |
| ! | ACTAAATCCCAATTACATTA+TGG | - | chr1_4:5839459-5839478 | Msa0146090:CDS | 25.0% |
| ! | CATACATCCATAATGTAATT+GGG | + | chr1_4:5839469-5839488 | None:intergenic | 25.0% |
| !!! | GATGTATGCACTTTTTATTT+TGG | - | chr1_4:5839481-5839500 | Msa0146090:intron | 25.0% |
| ! | TGAAGAAAGAAACTCATATA+AGG | - | chr1_4:5839753-5839772 | Msa0146090:CDS | 25.0% |
| ! | TAACAAATTCAACAAAATGC+AGG | - | chr1_4:5840292-5840311 | Msa0146090:intron | 25.0% |
| TAATGGTGTGATGAAAACAA+AGG | + | chr1_4:5837117-5837136 | None:intergenic | 30.0% | |
| ! | GTAACCATTCTTAGTATTGA+TGG | - | chr1_4:5837243-5837262 | Msa0146090:three_prime_UTR | 30.0% |
| !! | AACCATTCTTAGTATTGATG+GGG | - | chr1_4:5837245-5837264 | Msa0146090:three_prime_UTR | 30.0% |
| ! | TACCTTGTATATATTGGCTA+TGG | - | chr1_4:5837347-5837366 | Msa0146090:intron | 30.0% |
| !! | GTAAGTTGGTTCCATAATAA+TGG | - | chr1_4:5837589-5837608 | Msa0146090:CDS | 30.0% |
| TTCAGACACTAACACTTAAT+AGG | - | chr1_4:5837860-5837879 | Msa0146090:CDS | 30.0% | |
| TCAGACACTAACACTTAATA+GGG | - | chr1_4:5837861-5837880 | Msa0146090:CDS | 30.0% | |
| !! | TATGTTTATTTTTCGTGGCT+AGG | + | chr1_4:5837904-5837923 | None:intergenic | 30.0% |
| ! | AATTCAGTCACAGAATTTTG+CGG | - | chr1_4:5837970-5837989 | Msa0146090:CDS | 30.0% |
| !!! | AGTGGACGATTATTTTTATC+TGG | + | chr1_4:5838245-5838264 | None:intergenic | 30.0% |
| !!! | AAATTTTAGGGCAATGTTCA+AGG | + | chr1_4:5838298-5838317 | None:intergenic | 30.0% |
| ! | CTATGTTGTGGGAAAATTTT+AGG | + | chr1_4:5838311-5838330 | None:intergenic | 30.0% |
| ! | CTAAAATTTTCCCACAACAT+AGG | - | chr1_4:5838309-5838328 | Msa0146090:intron | 30.0% |
| ! | ATTTGAGGTGTATATACTTG+AGG | - | chr1_4:5838390-5838409 | Msa0146090:intron | 30.0% |
| !!! | TCAATTTTTTGTAGAGGACT+TGG | - | chr1_4:5838462-5838481 | Msa0146090:intron | 30.0% |
| AAAGTCTTGATGTCAAATGT+GGG | + | chr1_4:5838618-5838637 | None:intergenic | 30.0% | |
| TAGTTTAGTTAAGAATCGCT+TGG | - | chr1_4:5838839-5838858 | Msa0146090:CDS | 30.0% | |
| AGTTTAGTTAAGAATCGCTT+GGG | - | chr1_4:5838840-5838859 | Msa0146090:CDS | 30.0% | |
| AGCTGAAACAATTATTGATC+AGG | - | chr1_4:5838883-5838902 | Msa0146090:CDS | 30.0% | |
| !! | ACTGTGGTTTTTCTAAAGAT+AGG | + | chr1_4:5838914-5838933 | None:intergenic | 30.0% |
| AAAGTTTAGCATCCAAACAA+GGG | + | chr1_4:5839052-5839071 | None:intergenic | 30.0% | |
| CAACTTCACAAATAAAGATC+AGG | - | chr1_4:5839121-5839140 | Msa0146090:intron | 30.0% | |
| GTATTATGCAATGGCATATA+TGG | - | chr1_4:5839380-5839399 | Msa0146090:CDS | 30.0% | |
| ! | AGACAAAGTGGATTTAATCA+TGG | + | chr1_4:5839407-5839426 | None:intergenic | 30.0% |
| GCATACATCCATAATGTAAT+TGG | + | chr1_4:5839470-5839489 | None:intergenic | 30.0% | |
| ! | CGTTTTCTGATCATTTCAAT+AGG | - | chr1_4:5839948-5839967 | Msa0146090:intron | 30.0% |
| !! | GATGTTTTTACTCAATCAAG+TGG | - | chr1_4:5840071-5840090 | Msa0146090:intron | 30.0% |
| TGATAATTACCTTCGAATTC+AGG | - | chr1_4:5840145-5840164 | Msa0146090:intron | 30.0% | |
| ! | GAAATTTTACCTGAATTCGA+AGG | + | chr1_4:5840157-5840176 | None:intergenic | 30.0% |
| TTGAAGAAACTATGCCAAAT+TGG | - | chr1_4:5840368-5840387 | Msa0146090:intron | 30.0% | |
| TCCAGAGTCAATTTAGAAAA+TGG | - | chr1_4:5840416-5840435 | Msa0146090:intron | 30.0% | |
| !! | ACCATTTTCTAAATTGACTC+TGG | + | chr1_4:5840420-5840439 | None:intergenic | 30.0% |
| CAAAAATACTTTCACAAGAG+AGG | - | chr1_4:5840612-5840631 | Msa0146090:intron | 30.0% | |
| AACAAAGGCTGTATAGAGTA+TGG | + | chr1_4:5837102-5837121 | None:intergenic | 35.0% | |
| TTACCAAGTTCCCATAAGTA+GGG | + | chr1_4:5837227-5837246 | None:intergenic | 35.0% | |
| !! | ACCATTCTTAGTATTGATGG+GGG | - | chr1_4:5837246-5837265 | Msa0146090:three_prime_UTR | 35.0% |
| GGAATTCAATAATTGCAGCA+GGG | + | chr1_4:5837290-5837309 | None:intergenic | 35.0% | |
| AGGAATTCAATAATTGCAGC+AGG | + | chr1_4:5837291-5837310 | None:intergenic | 35.0% | |
| AGCCATAGCCAATATATACA+AGG | + | chr1_4:5837352-5837371 | None:intergenic | 35.0% | |
| GTTCCATAATAATGGCAGTA+GGG | - | chr1_4:5837597-5837616 | Msa0146090:CDS | 35.0% | |
| TTATGCAAACTATCTTGGTG+AGG | - | chr1_4:5837640-5837659 | Msa0146090:intron | 35.0% | |
| ! | TAGTGCAGCTACTTTATGAA+AGG | - | chr1_4:5837664-5837683 | Msa0146090:intron | 35.0% |
| TGGCTAGGTTTATTAGTAGT+TGG | + | chr1_4:5837889-5837908 | None:intergenic | 35.0% | |
| !! | AATTAAGTTGATCTGTGTGC+AGG | - | chr1_4:5838127-5838146 | Msa0146090:intron | 35.0% |
| GATTACTTTGATGTGATCTC+AGG | - | chr1_4:5838179-5838198 | Msa0146090:intron | 35.0% | |
| ATATCTTTGGCAGCAAAAAG+TGG | + | chr1_4:5838263-5838282 | None:intergenic | 35.0% | |
| GTAAAAGGGCTTGATATCTT+TGG | + | chr1_4:5838276-5838295 | None:intergenic | 35.0% | |
| TCTCTCTAACAACTTGATGA+AGG | + | chr1_4:5838548-5838567 | None:intergenic | 35.0% | |
| CAAGTTGTTAGAGAGAAACT+TGG | - | chr1_4:5838552-5838571 | Msa0146090:intron | 35.0% | |
| AAATGTGGGAACAACAATGT+TGG | + | chr1_4:5838604-5838623 | None:intergenic | 35.0% | |
| CAAAGTCTTGATGTCAAATG+TGG | + | chr1_4:5838619-5838638 | None:intergenic | 35.0% | |
| TAATGGAATGTTGCCAATTG+TGG | - | chr1_4:5838711-5838730 | Msa0146090:intron | 35.0% | |
| GTCAAGTTATTGAACTCAAG+TGG | - | chr1_4:5838809-5838828 | Msa0146090:CDS | 35.0% | |
| AAGTTTAGCATCCAAACAAG+GGG | + | chr1_4:5839051-5839070 | None:intergenic | 35.0% | |
| GAAAGTTTAGCATCCAAACA+AGG | + | chr1_4:5839053-5839072 | None:intergenic | 35.0% | |
| TATTTGTGAAGTTGTGAGCA+GGG | + | chr1_4:5839115-5839134 | None:intergenic | 35.0% | |
| TTATTTGTGAAGTTGTGAGC+AGG | + | chr1_4:5839116-5839135 | None:intergenic | 35.0% | |
| ACAAATAAAGATCAGGAAGC+TGG | - | chr1_4:5839128-5839147 | Msa0146090:intron | 35.0% | |
| ! | AAGATTGTTGTGTGCTGATA+TGG | - | chr1_4:5839635-5839654 | Msa0146090:intron | 35.0% |
| TGATCATTTCAATAGGCACT+GGG | - | chr1_4:5839955-5839974 | Msa0146090:intron | 35.0% | |
| CCAATCTAATAATCCCCATT+TGG | + | chr1_4:5840021-5840040 | None:intergenic | 35.0% | |
| CCAAATGGGGATTATTAGAT+TGG | - | chr1_4:5840018-5840037 | Msa0146090:intron | 35.0% | |
| ! | TTAGATTGGCTAACACATAG+TGG | - | chr1_4:5840032-5840051 | Msa0146090:intron | 35.0% |
| TACTCAATCAAGTGGTGATA+TGG | - | chr1_4:5840079-5840098 | Msa0146090:intron | 35.0% | |
| TATTAATGGCATAACCTCTG+AGG | + | chr1_4:5840227-5840246 | None:intergenic | 35.0% | |
| TTCTTCAGTAGACATTGCTA+CGG | - | chr1_4:5840337-5840356 | Msa0146090:intron | 35.0% | |
| TGAATCATGAAACTAGATGC+CGG | + | chr1_4:5840685-5840704 | None:intergenic | 35.0% | |
| AAATTCAGCCCCCTACTTAT+GGG | - | chr1_4:5837214-5837233 | Msa0146090:three_prime_UTR | 40.0% | |
| TACCAAGTTCCCATAAGTAG+GGG | + | chr1_4:5837226-5837245 | None:intergenic | 40.0% | |
| GTTACCAAGTTCCCATAAGT+AGG | + | chr1_4:5837228-5837247 | None:intergenic | 40.0% | |
| TCCCCCATCAATACTAAGAA+TGG | + | chr1_4:5837250-5837269 | None:intergenic | 40.0% | |
| !! | ATTCTTAGTATTGATGGGGG+AGG | - | chr1_4:5837249-5837268 | Msa0146090:three_prime_UTR | 40.0% |
| !! | TATTGATGGGGGAGGTATTA+GGG | - | chr1_4:5837257-5837276 | Msa0146090:exon | 40.0% |
| ATTCCTTGAATCTCACCTTC+AGG | - | chr1_4:5837305-5837324 | Msa0146090:CDS | 40.0% | |
| ATACCTGAAGGTGAGATTCA+AGG | + | chr1_4:5837311-5837330 | None:intergenic | 40.0% | |
| GGTTCCATAATAATGGCAGT+AGG | - | chr1_4:5837596-5837615 | Msa0146090:CDS | 40.0% | |
| CATCCCTACTGCCATTATTA+TGG | + | chr1_4:5837603-5837622 | None:intergenic | 40.0% | |
| ! | TTTATCTGGAGCAGCTAACA+TGG | + | chr1_4:5838231-5838250 | None:intergenic | 40.0% |
| GGGCAATGTTCAAGGTAAAA+GGG | + | chr1_4:5838290-5838309 | None:intergenic | 40.0% | |
| AGGGCAATGTTCAAGGTAAA+AGG | + | chr1_4:5838291-5838310 | None:intergenic | 40.0% | |
| GCAAAGGTAATGAGATCTCT+TGG | - | chr1_4:5838498-5838517 | Msa0146090:intron | 40.0% | |
| AAGGTAATGAGATCTCTTGG+AGG | - | chr1_4:5838501-5838520 | Msa0146090:intron | 40.0% | |
| GAGGAGTTCAATCTCATTGA+TGG | - | chr1_4:5839158-5839177 | Msa0146090:intron | 40.0% | |
| GAGTTCAATCTCATTGATGG+TGG | - | chr1_4:5839161-5839180 | Msa0146090:intron | 40.0% | |
| TGGTGTTTGCGCAAATAATC+CGG | - | chr1_4:5839181-5839200 | Msa0146090:intron | 40.0% | |
| CATTCATTGCAACTAAAGCC+TGG | + | chr1_4:5839863-5839882 | None:intergenic | 40.0% | |
| GGCTTGATTGGAAAGAAATC+AGG | + | chr1_4:5839915-5839934 | None:intergenic | 40.0% | |
| TTTCTTTCCAATCAAGCCTC+TGG | - | chr1_4:5839917-5839936 | Msa0146090:intron | 40.0% | |
| AGAAAACGACCATATTCCAG+AGG | + | chr1_4:5839936-5839955 | None:intergenic | 40.0% | |
| CTGATCATTTCAATAGGCAC+TGG | - | chr1_4:5839954-5839973 | Msa0146090:intron | 40.0% | |
| ATGGTAGTAGGAGTCGAATT+CGG | - | chr1_4:5840199-5840218 | Msa0146090:intron | 40.0% | |
| TAGATATAGCGCAAGCTAAG+TGG | + | chr1_4:5840265-5840284 | None:intergenic | 40.0% | |
| ATGCAGGATGATACATTGAC+AGG | - | chr1_4:5840308-5840327 | Msa0146090:intron | 40.0% | |
| ! | TCTAAATTGACTCTGGAGAC+CGG | + | chr1_4:5840413-5840432 | None:intergenic | 40.0% |
| ! | CATTTTGAGCCACTAACAAC+CGG | - | chr1_4:5840440-5840459 | Msa0146090:intron | 40.0% |
| !! | AGCATCTTCATTGGTTTCTC+CGG | + | chr1_4:5840462-5840481 | None:intergenic | 40.0% |
| GAATCATGAAACTAGATGCC+GGG | + | chr1_4:5840684-5840703 | None:intergenic | 40.0% | |
| CAAATTCAGCCCCCTACTTA+TGG | - | chr1_4:5837213-5837232 | Msa0146090:three_prime_UTR | 45.0% | |
| ACCAAGTTCCCATAAGTAGG+GGG | + | chr1_4:5837225-5837244 | None:intergenic | 45.0% | |
| !! | GTATTGATGGGGGAGGTATT+AGG | - | chr1_4:5837256-5837275 | Msa0146090:exon | 45.0% |
| !! | ATTGATGGGGGAGGTATTAG+GGG | - | chr1_4:5837258-5837277 | Msa0146090:exon | 45.0% |
| CAATAATTGCAGCAGGGATG+AGG | + | chr1_4:5837284-5837303 | None:intergenic | 45.0% | |
| AGTTGGATGGTGAAGATGCA+AGG | - | chr1_4:5838150-5838169 | Msa0146090:intron | 45.0% | |
| GTGATCTCAGGAACAAGTAC+AGG | - | chr1_4:5838191-5838210 | Msa0146090:intron | 45.0% | |
| ATCTCAGGAACAAGTACAGG+AGG | - | chr1_4:5838194-5838213 | Msa0146090:intron | 45.0% | |
| TGGTGCGACACTATTAGCAA+AGG | - | chr1_4:5838482-5838501 | Msa0146090:intron | 45.0% | |
| CTTGGAGGACCCAAATATGA+TGG | - | chr1_4:5838516-5838535 | Msa0146090:intron | 45.0% | |
| TTGTGAGCAGGGAGATAAGT+AGG | + | chr1_4:5839104-5839123 | None:intergenic | 45.0% | |
| TCAGGAAGCTGGAAAAGAAG+AGG | - | chr1_4:5839139-5839158 | Msa0146090:intron | 45.0% | |
| CCATATTCCAGAGGCTTGAT+TGG | + | chr1_4:5839927-5839946 | None:intergenic | 45.0% | |
| !! | CCAATCAAGCCTCTGGAATA+TGG | - | chr1_4:5839924-5839943 | Msa0146090:intron | 45.0% |
| CACTGGGACTGCAAAAAATG+AGG | - | chr1_4:5839971-5839990 | Msa0146090:intron | 45.0% | |
| GGACTGCAAAAAATGAGGAG+AGG | - | chr1_4:5839976-5839995 | Msa0146090:intron | 45.0% | |
| TGCACAAATGGCAGCCAAAT+GGG | - | chr1_4:5840004-5840023 | Msa0146090:intron | 45.0% | |
| TTCAGTAGACATTGCTACGG+AGG | - | chr1_4:5840340-5840359 | Msa0146090:intron | 45.0% | |
| TTGGTTTCTCCGGTTGTTAG+TGG | + | chr1_4:5840452-5840471 | None:intergenic | 45.0% | |
| !! | CCTCTTGAGAGCATCTTCAT+TGG | + | chr1_4:5840471-5840490 | None:intergenic | 45.0% |
| CCAATGAAGATGCTCTCAAG+AGG | - | chr1_4:5840468-5840487 | Msa0146090:intron | 45.0% | |
| TCTTGCCTCTACTTGTGTGT+GGG | + | chr1_4:5840658-5840677 | None:intergenic | 45.0% | |
| TTCTTGCCTCTACTTGTGTG+TGG | + | chr1_4:5840659-5840678 | None:intergenic | 45.0% | |
| !! | ATTATTTAATTAATAATTGA+AGG | - | chr1_4:5839810-5839829 | Msa0146090:intron | 5.0% |
| GTTGATCTGTGTGCAGGAGT+TGG | - | chr1_4:5838133-5838152 | Msa0146090:intron | 50.0% | |
| ATCTGTGTGCAGGAGTTGGA+TGG | - | chr1_4:5838137-5838156 | Msa0146090:intron | 50.0% | |
| GCTTCAGAGATCCCCTTGTT+TGG | - | chr1_4:5839037-5839056 | Msa0146090:intron | 50.0% | |
| GGAGAGGTTCACTGCACAAA+TGG | - | chr1_4:5839992-5840011 | Msa0146090:intron | 50.0% | |
| CTGCACAAATGGCAGCCAAA+TGG | - | chr1_4:5840003-5840022 | Msa0146090:intron | 50.0% | |
| GCACAAATGGCAGCCAAATG+GGG | - | chr1_4:5840005-5840024 | Msa0146090:intron | 50.0% | |
| AGTCGAATTCGGTACCTCAG+AGG | - | chr1_4:5840210-5840229 | Msa0146090:intron | 50.0% | |
| AGATCCCCACACACAAGTAG+AGG | - | chr1_4:5840650-5840669 | Msa0146090:CDS | 50.0% | |
| CTTGCCTCTACTTGTGTGTG+GGG | + | chr1_4:5840657-5840676 | None:intergenic | 50.0% | |
| CAAGTAGAGGCAAGAAAGCC+CGG | - | chr1_4:5840663-5840682 | Msa0146090:CDS | 50.0% | |
| GCCCCCTACTTATGGGAACT+TGG | - | chr1_4:5837221-5837240 | Msa0146090:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 5837047 | 5840925 | 5837047 | ID=Msa0146090;Name=Msa0146090 |
| chr1_4 | mRNA | 5837047 | 5840925 | 5837047 | ID=Msa0146090-mRNA-1;Parent=Msa0146090;Name=Msa0146090-mRNA-1;_AED=0.06;_eAED=0.06;_QI=136|1|0.85|1|1|1|7|225|417 |
| chr1_4 | exon | 5837047 | 5837365 | 5837047 | ID=Msa0146090-mRNA-1:exon:2506;Parent=Msa0146090-mRNA-1 |
| chr1_4 | exon | 5837483 | 5837658 | 5837483 | ID=Msa0146090-mRNA-1:exon:2505;Parent=Msa0146090-mRNA-1 |
| chr1_4 | exon | 5837806 | 5838108 | 5837806 | ID=Msa0146090-mRNA-1:exon:2504;Parent=Msa0146090-mRNA-1 |
| chr1_4 | exon | 5838770 | 5838934 | 5838770 | ID=Msa0146090-mRNA-1:exon:2503;Parent=Msa0146090-mRNA-1 |
| chr1_4 | exon | 5839307 | 5839496 | 5839307 | ID=Msa0146090-mRNA-1:exon:2502;Parent=Msa0146090-mRNA-1 |
| chr1_4 | exon | 5839642 | 5839823 | 5839642 | ID=Msa0146090-mRNA-1:exon:2501;Parent=Msa0146090-mRNA-1 |
| chr1_4 | exon | 5840646 | 5840925 | 5840646 | ID=Msa0146090-mRNA-1:exon:2500;Parent=Msa0146090-mRNA-1 |
| chr1_4 | five_prime_UTR | 5840790 | 5840925 | 5840790 | ID=Msa0146090-mRNA-1:five_prime_utr;Parent=Msa0146090-mRNA-1 |
| chr1_4 | CDS | 5840646 | 5840789 | 5840646 | ID=Msa0146090-mRNA-1:cds;Parent=Msa0146090-mRNA-1 |
| chr1_4 | CDS | 5839642 | 5839823 | 5839642 | ID=Msa0146090-mRNA-1:cds;Parent=Msa0146090-mRNA-1 |
| chr1_4 | CDS | 5839307 | 5839496 | 5839307 | ID=Msa0146090-mRNA-1:cds;Parent=Msa0146090-mRNA-1 |
| chr1_4 | CDS | 5838770 | 5838934 | 5838770 | ID=Msa0146090-mRNA-1:cds;Parent=Msa0146090-mRNA-1 |
| chr1_4 | CDS | 5837806 | 5838108 | 5837806 | ID=Msa0146090-mRNA-1:cds;Parent=Msa0146090-mRNA-1 |
| chr1_4 | CDS | 5837483 | 5837658 | 5837483 | ID=Msa0146090-mRNA-1:cds;Parent=Msa0146090-mRNA-1 |
| chr1_4 | CDS | 5837272 | 5837365 | 5837272 | ID=Msa0146090-mRNA-1:cds;Parent=Msa0146090-mRNA-1 |
| chr1_4 | three_prime_UTR | 5837047 | 5837271 | 5837047 | ID=Msa0146090-mRNA-1:three_prime_utr;Parent=Msa0146090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
