Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137030 | sp|Q9C9F4|COLX_ARATH | 37.179 | 312 | 130 | 10 | 9 | 304 | 7 | 268 | 2.21e-54 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137030 | G8A287 | 89.504 | 343 | 18 | 2 | 13 | 337 | 2 | 344 | 0.0 | 619 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0137030 | 0.800462 | 1.424832e-48 | -8.615850e-47 |
| Msa0006870 | Msa0137030 | 0.803217 | 3.873265e-49 | -8.615850e-47 |
| Msa0040520 | Msa0137030 | -0.802914 | 4.474078e-49 | -8.615850e-47 |
| Msa0043160 | Msa0137030 | 0.933380 | 2.048907e-95 | -8.615850e-47 |
| Msa0043680 | Msa0137030 | 0.831940 | 1.255118e-55 | -8.615850e-47 |
| Msa0077910 | Msa0137030 | 0.812011 | 5.254479e-51 | -8.615850e-47 |
| Msa0092660 | Msa0137030 | 0.820082 | 8.278564e-53 | -8.615850e-47 |
| Msa0092680 | Msa0137030 | 0.807999 | 3.840609e-50 | -8.615850e-47 |
| Msa0092730 | Msa0137030 | 0.821895 | 3.165982e-53 | -8.615850e-47 |
| Msa0100570 | Msa0137030 | 0.802002 | 6.897767e-49 | -8.615850e-47 |
| Msa0100860 | Msa0137030 | 0.800423 | 1.451121e-48 | -8.615850e-47 |
| Msa0121650 | Msa0137030 | 0.807932 | 3.969564e-50 | -8.615850e-47 |
| Msa0125800 | Msa0137030 | 0.820164 | 7.928193e-53 | -8.615850e-47 |
| Msa0137030 | Msa0137600 | 0.824212 | 9.124298e-54 | -8.615850e-47 |
| Msa0137030 | Msa0155550 | 0.801616 | 8.279109e-49 | -8.615850e-47 |
| Msa0137030 | Msa0157350 | 0.804284 | 2.326066e-49 | -8.615850e-47 |
| Msa0137030 | Msa0170440 | 0.815517 | 8.875643e-52 | -8.615850e-47 |
| Msa0137030 | Msa0182270 | 0.938945 | 2.898497e-99 | -8.615850e-47 |
| Msa0137030 | Msa0223280 | 0.807351 | 5.272961e-50 | -8.615850e-47 |
| Msa0137030 | Msa0247310 | 0.832257 | 1.048117e-55 | -8.615850e-47 |
| Msa0137030 | Msa0259980 | 0.805981 | 1.026882e-49 | -8.615850e-47 |
| Msa0137030 | Msa0280140 | 0.826514 | 2.601408e-54 | -8.615850e-47 |
| Msa0137030 | Msa0308430 | 0.818339 | 2.064083e-52 | -8.615850e-47 |
| Msa0137030 | Msa0339860 | 0.804146 | 2.484513e-49 | -8.615850e-47 |
| Msa0137030 | Msa0367370 | 0.805646 | 1.207204e-49 | -8.615850e-47 |
| Msa0137030 | Msa0368430 | 0.810231 | 1.277547e-50 | -8.615850e-47 |
| Msa0137030 | Msa0379110 | 0.818101 | 2.337142e-52 | -8.615850e-47 |
| Msa0137030 | Msa0379390 | 0.822621 | 2.148260e-53 | -8.615850e-47 |
| Msa0137030 | Msa0379450 | 0.821700 | 3.511331e-53 | -8.615850e-47 |
| Msa0137030 | Msa0415930 | 0.812594 | 3.918489e-51 | -8.615850e-47 |
| Msa0137030 | Msa0417630 | 0.831175 | 1.937463e-55 | -8.615850e-47 |
| Msa0137030 | Msa0480150 | 0.813704 | 2.236808e-51 | -8.615850e-47 |
| Msa0137030 | Msa0526130 | 0.810123 | 1.347839e-50 | -8.615850e-47 |
| Msa0137030 | Msa0532840 | 0.818012 | 2.447651e-52 | -8.615850e-47 |
| Msa0137030 | Msa0533010 | 0.810182 | 1.309019e-50 | -8.615850e-47 |
| Msa0137030 | Msa0550280 | 0.803926 | 2.760851e-49 | -8.615850e-47 |
| Msa0137030 | Msa0567290 | 0.810376 | 1.188504e-50 | -8.615850e-47 |
| Msa0137030 | Msa0605670 | 0.820095 | 8.220018e-53 | -8.615850e-47 |
| Msa0137030 | Msa0607480 | 0.827535 | 1.482657e-54 | -8.615850e-47 |
| Msa0137030 | Msa0620130 | 0.827850 | 1.245880e-54 | -8.615850e-47 |
| Msa0137030 | Msa0633750 | 0.800750 | 1.244700e-48 | -8.615850e-47 |
| Msa0137030 | Msa0646710 | 0.818359 | 2.043121e-52 | -8.615850e-47 |
| Msa0137030 | Msa0647750 | 0.816831 | 4.514796e-52 | -8.615850e-47 |
| Msa0137030 | Msa0659920 | 0.882631 | 8.862218e-71 | -8.615850e-47 |
| Msa0137030 | Msa0671610 | -0.814251 | 1.694788e-51 | -8.615850e-47 |
| Msa0137030 | Msa0681890 | 0.805930 | 1.052284e-49 | -8.615850e-47 |
| Msa0137030 | Msa0686240 | 0.824311 | 8.647116e-54 | -8.615850e-47 |
| Msa0137030 | Msa0703720 | 0.808989 | 2.361036e-50 | -8.615850e-47 |
| Msa0137030 | Msa0703760 | 0.824681 | 7.074521e-54 | -8.615850e-47 |
| Msa0137030 | Msa0706580 | 0.875300 | 3.434210e-68 | -8.615850e-47 |
| Msa0137030 | Msa0732100 | 0.805749 | 1.148738e-49 | -8.615850e-47 |
| Msa0137030 | Msa0773080 | 0.815997 | 6.939921e-52 | -8.615850e-47 |
| Msa0137030 | Msa0790830 | 0.801505 | 8.724676e-49 | -8.615850e-47 |
| Msa0137030 | Msa0804110 | 0.802522 | 5.389659e-49 | -8.615850e-47 |
| Msa0137030 | Msa0810370 | 0.817001 | 4.134161e-52 | -8.615850e-47 |
| Msa0137030 | Msa0842220 | 0.802075 | 6.664073e-49 | -8.615850e-47 |
| Msa0137030 | Msa0900320 | 0.816937 | 4.274126e-52 | -8.615850e-47 |
| Msa0137030 | Msa0955260 | 0.800351 | 1.500954e-48 | -8.615850e-47 |
| Msa0137030 | Msa0965960 | 0.812355 | 4.419551e-51 | -8.615850e-47 |
| Msa0137030 | Msa0972730 | 0.808393 | 3.165664e-50 | -8.615850e-47 |
| Msa0137030 | Msa1022310 | 0.814201 | 1.738205e-51 | -8.615850e-47 |
| Msa0137030 | Msa1027790 | 0.829974 | 3.812632e-55 | -8.615850e-47 |
| Msa0137030 | Msa1040770 | 0.806392 | 8.411757e-50 | -8.615850e-47 |
| Msa0137030 | Msa1045440 | 0.840697 | 7.436592e-58 | -8.615850e-47 |
| Msa0137030 | Msa1061180 | 0.806713 | 7.196542e-50 | -8.615850e-47 |
| Msa0137030 | Msa1067430 | 0.823168 | 1.601587e-53 | -8.615850e-47 |
| Msa0137030 | Msa1072080 | 0.816599 | 5.089761e-52 | -8.615850e-47 |
| Msa0137030 | Msa1084150 | 0.803431 | 3.497270e-49 | -8.615850e-47 |
| Msa0137030 | Msa1106580 | 0.850803 | 1.341116e-60 | -8.615850e-47 |
| Msa0137030 | Msa1112610 | 0.821369 | 4.189033e-53 | -8.615850e-47 |
| Msa0137030 | Msa1126310 | 0.811307 | 7.474805e-51 | -8.615850e-47 |
| Msa0137030 | Msa1127510 | 0.812199 | 4.780986e-51 | -8.615850e-47 |
| Msa0137030 | Msa1128350 | 0.812793 | 3.546168e-51 | -8.615850e-47 |
| Msa0137030 | Msa1149960 | 0.837468 | 5.105613e-57 | -8.615850e-47 |
| Msa0137030 | Msa1166180 | 0.800952 | 1.131999e-48 | -8.615850e-47 |
| Msa0137030 | Msa1167160 | 0.803649 | 3.151473e-49 | -8.615850e-47 |
| Msa0137030 | Msa1183760 | 0.851629 | 7.837645e-61 | -8.615850e-47 |
| Msa0137030 | Msa1271510 | 0.811977 | 5.343317e-51 | -8.615850e-47 |
| Msa0137030 | Msa1279700 | 0.816180 | 6.317120e-52 | -8.615850e-47 |
| Msa0137030 | Msa1305650 | 0.806910 | 6.537422e-50 | -8.615850e-47 |
| Msa0137030 | Msa1361840 | 0.980376 | 4.478755e-150 | -8.615850e-47 |
| Msa0137030 | Msa1365810 | 0.808158 | 3.552760e-50 | -8.615850e-47 |
| Msa0137030 | Msa1367810 | 0.807799 | 4.236410e-50 | -8.615850e-47 |
| Msa0137030 | Msa1398840 | 0.825572 | 4.356988e-54 | -8.615850e-47 |
| Msa0137030 | Msa1415250 | 0.821022 | 5.036433e-53 | -8.615850e-47 |
| Msa0137030 | Msa1424240 | 0.822263 | 2.600775e-53 | -8.615850e-47 |
| Msa0137030 | Msa1430270 | 0.804945 | 1.692946e-49 | -8.615850e-47 |
| Msa0137030 | Msa1437320 | 0.811075 | 8.394744e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137030 | MtrunA17_Chr1g0209071 | 89.504 | 343 | 18 | 2 | 13 | 337 | 2 | 344 | 0.0 | 619 |
| Msa0137030 | MtrunA17_Chr5g0429341 | 43.697 | 119 | 50 | 3 | 15 | 117 | 4 | 121 | 7.65e-22 | 95.5 |
| Msa0137030 | MtrunA17_Chr3g0120711 | 41.346 | 104 | 46 | 2 | 15 | 103 | 4 | 107 | 6.97e-18 | 84.0 |
| Msa0137030 | MtrunA17_Chr7g0268691 | 36.792 | 106 | 52 | 2 | 14 | 104 | 18 | 123 | 4.74e-16 | 78.2 |
| Msa0137030 | MtrunA17_Chr2g0322941 | 39.806 | 103 | 48 | 2 | 13 | 101 | 41 | 143 | 3.49e-14 | 71.2 |
| Msa0137030 | MtrunA17_Chr7g0251781 | 30.973 | 113 | 56 | 2 | 16 | 106 | 5 | 117 | 3.47e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137030 | AT1G68190.1 | 37.179 | 312 | 130 | 10 | 9 | 304 | 7 | 268 | 2.25e-55 | 184 |
| Msa0137030 | AT1G68190.3 | 37.179 | 312 | 130 | 10 | 9 | 304 | 7 | 268 | 2.25e-55 | 184 |
| Msa0137030 | AT1G68190.2 | 37.179 | 312 | 130 | 10 | 9 | 304 | 36 | 297 | 4.65e-55 | 184 |
| Msa0137030 | AT5G48250.1 | 42.991 | 107 | 43 | 3 | 15 | 103 | 4 | 110 | 2.72e-20 | 90.9 |
| Msa0137030 | AT3G07650.3 | 39.474 | 114 | 44 | 3 | 15 | 103 | 4 | 117 | 2.48e-17 | 82.4 |
| Msa0137030 | AT3G07650.2 | 39.474 | 114 | 44 | 3 | 15 | 103 | 4 | 117 | 2.48e-17 | 82.4 |
| Msa0137030 | AT3G07650.4 | 39.474 | 114 | 44 | 3 | 15 | 103 | 4 | 117 | 2.48e-17 | 82.4 |
| Msa0137030 | AT3G07650.1 | 39.474 | 114 | 44 | 3 | 15 | 103 | 4 | 117 | 2.48e-17 | 82.4 |
| Msa0137030 | AT2G33500.1 | 36.449 | 107 | 52 | 2 | 16 | 106 | 12 | 118 | 2.51e-16 | 79.7 |
| Msa0137030 | AT2G33500.2 | 36.449 | 107 | 52 | 2 | 16 | 106 | 12 | 118 | 2.54e-16 | 79.7 |
| Msa0137030 | AT2G47890.3 | 37.037 | 108 | 54 | 3 | 11 | 104 | 8 | 115 | 2.97e-16 | 78.6 |
| Msa0137030 | AT2G47890.1 | 37.037 | 108 | 54 | 3 | 11 | 104 | 8 | 115 | 3.34e-16 | 79.0 |
| Msa0137030 | AT2G47890.2 | 37.037 | 108 | 54 | 3 | 11 | 104 | 8 | 115 | 4.31e-16 | 77.0 |
| Msa0137030 | AT1G28050.1 | 34.483 | 116 | 59 | 3 | 9 | 107 | 1 | 116 | 8.51e-16 | 78.2 |
| Msa0137030 | AT3G21880.3 | 37.864 | 103 | 50 | 3 | 13 | 101 | 6 | 108 | 6.60e-14 | 72.4 |
| Msa0137030 | AT3G21880.2 | 37.864 | 103 | 50 | 3 | 13 | 101 | 6 | 108 | 6.60e-14 | 72.4 |
| Msa0137030 | AT3G21880.1 | 37.864 | 103 | 50 | 3 | 13 | 101 | 2 | 104 | 7.03e-14 | 72.4 |
| Msa0137030 | AT4G15250.1 | 34.951 | 103 | 53 | 2 | 13 | 101 | 2 | 104 | 2.24e-12 | 67.4 |
| Msa0137030 | AT5G15840.1 | 36.000 | 100 | 50 | 3 | 14 | 100 | 18 | 116 | 4.73e-11 | 63.9 |
| Msa0137030 | AT5G15840.2 | 36.000 | 100 | 50 | 3 | 14 | 100 | 18 | 116 | 9.09e-11 | 62.0 |
Find 77 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCATGGAGAGTTATTT+TGG | 0.172335 | 1_3:-69343556 | Msa0137030:CDS |
| CCACCAAACATCACTCTAAT+TGG | 0.186429 | 1_3:+69342745 | None:intergenic |
| ACTATGGGGATTTGAATTTA+AGG | 0.203446 | 1_3:-69344549 | Msa0137030:CDS |
| CAAAACTATGAGGAACTATT+TGG | 0.211793 | 1_3:-69342781 | Msa0137030:CDS |
| AGCAGATTGTTGATTTAAAA+AGG | 0.229527 | 1_3:-69343787 | Msa0137030:CDS |
| CAAATAGTTCCTCATAGTTT+TGG | 0.233633 | 1_3:+69342782 | None:intergenic |
| GATCATTCTACAAAGATAAC+TGG | 0.292316 | 1_3:-69343743 | Msa0137030:CDS |
| CCATAGTGTTGCAAACTCTT+TGG | 0.316623 | 1_3:+69344565 | None:intergenic |
| CGATCTGTCAAATCTTTCAT+TGG | 0.318044 | 1_3:-69344599 | Msa0137030:CDS |
| CCAAAGAGTTTGCAACACTA+TGG | 0.332185 | 1_3:-69344565 | Msa0137030:CDS |
| AAATTACATTTGAATGCTTT+CGG | 0.333038 | 1_3:+69342311 | None:intergenic |
| ATTTCCATGACCAACAATAA+TGG | 0.336940 | 1_3:+69342340 | None:intergenic |
| AGACGTCTCTTATTCTTCAT+TGG | 0.353797 | 1_3:-69342719 | Msa0137030:CDS |
| TTCTTGTTGTCCATTATTGT+TGG | 0.381018 | 1_3:-69342350 | Msa0137030:three_prime_UTR |
| AATTGTCCGGCCGGCACCTC+CGG | 0.395024 | 1_3:-69344742 | Msa0137030:CDS |
| AATTAGACCTCCATTGTACT+TGG | 0.396036 | 1_3:+69342658 | None:intergenic |
| TTTGTCTTCATCTTCAGTTA+TGG | 0.410820 | 1_3:-69343585 | Msa0137030:CDS |
| AAATGTAATTTGAATTAGAA+AGG | 0.419682 | 1_3:-69342299 | Msa0137030:three_prime_UTR |
| CCAATGGACCTTTGCATCAC+AGG | 0.442091 | 1_3:+69344772 | None:intergenic |
| TGGAATGTTAAGTCAACGTC+AGG | 0.452059 | 1_3:+69342802 | None:intergenic |
| GATCCAATTAGAGTGATGTT+TGG | 0.455146 | 1_3:-69342748 | Msa0137030:CDS |
| GTCTGGTGACAATCATGATA+AGG | 0.459630 | 1_3:-69344417 | Msa0137030:CDS |
| TCAGTCACTTCAACGACGTC+TGG | 0.463294 | 1_3:-69344434 | Msa0137030:CDS |
| CTCTTATTCTTCATTGGAGA+AGG | 0.464404 | 1_3:-69342713 | Msa0137030:CDS |
| GAAGAATAAACATTATGTTC+AGG | 0.471002 | 1_3:-69342492 | Msa0137030:three_prime_UTR |
| TGTTTGAAGTCTACAACTAA+AGG | 0.472949 | 1_3:-69344876 | Msa0137030:intron |
| TTGTCCATTATTGTTGGTCA+TGG | 0.480987 | 1_3:-69342344 | Msa0137030:three_prime_UTR |
| CATTGGGCAAATGAATTGTC+CGG | 0.481757 | 1_3:-69344755 | Msa0137030:CDS |
| TACCTGACCTAGTTGACTGC+TGG | 0.483505 | 1_3:+69344391 | None:intergenic |
| ACACAAGGGTCCGGAGGTGC+CGG | 0.485126 | 1_3:+69344732 | None:intergenic |
| CAAAGAGTTTGCAACACTAT+GGG | 0.487640 | 1_3:-69344564 | Msa0137030:CDS |
| TCTGGTGACAATCATGATAA+GGG | 0.492151 | 1_3:-69344416 | Msa0137030:CDS |
| CTGTGATGCAAAGGTCCATT+GGG | 0.492787 | 1_3:-69344771 | Msa0137030:CDS |
| CTTAACATTCCAAAACTATG+AGG | 0.496040 | 1_3:-69342791 | Msa0137030:CDS |
| ATCCAGCAGTCAACTAGGTC+AGG | 0.498273 | 1_3:-69344393 | Msa0137030:intron |
| GTTATGGACCTTCCCTTGCA+TGG | 0.501977 | 1_3:-69343569 | Msa0137030:CDS |
| CTTACAACTTCTATCAAAAG+AGG | 0.502880 | 1_3:-69342427 | Msa0137030:three_prime_UTR |
| TGATAATTAAAGTGCTTGAT+CGG | 0.503663 | 1_3:-69342607 | Msa0137030:three_prime_UTR |
| CCTGTGATGCAAAGGTCCAT+TGG | 0.506685 | 1_3:-69344772 | Msa0137030:CDS |
| TGGGAGAAGACAATTCTATC+GGG | 0.510510 | 1_3:-69343655 | Msa0137030:CDS |
| CTGGGAGAAGACAATTCTAT+CGG | 0.513285 | 1_3:-69343656 | Msa0137030:CDS |
| TGCGATCAAAAGCTACATGA+TGG | 0.526346 | 1_3:-69344641 | Msa0137030:CDS |
| CCAAAATAACTCTCCATGCA+AGG | 0.527678 | 1_3:+69343556 | None:intergenic |
| AAGTCTACAACTAAAGGAAA+CGG | 0.531820 | 1_3:-69344870 | Msa0137030:CDS |
| CCAATTAGAGTGATGTTTGG+TGG | 0.535280 | 1_3:-69342745 | Msa0137030:CDS |
| ACGAGTTACACACAAGGGTC+CGG | 0.543558 | 1_3:+69344723 | None:intergenic |
| CAAGTTCTTCACATATTCCC+AGG | 0.546412 | 1_3:+69342848 | None:intergenic |
| TGAAAACAGTGTCGATCAGA+AGG | 0.550060 | 1_3:-69344522 | Msa0137030:CDS |
| GTTTCAGCTAATAGAAGAGA+GGG | 0.550624 | 1_3:-69343765 | Msa0137030:CDS |
| AACTATGAGGAACTATTTGG+AGG | 0.557150 | 1_3:-69342778 | Msa0137030:CDS |
| CGGACAATTCATTTGCCCAA+TGG | 0.558043 | 1_3:+69344756 | None:intergenic |
| GTTGCAAACTCTTTGGCAGA+AGG | 0.563765 | 1_3:+69344572 | None:intergenic |
| AAGGGATCCAGCAGTCAACT+AGG | 0.570420 | 1_3:-69344398 | Msa0137030:CDS |
| GCAGCAAAATATTCAAGACC+TGG | 0.572888 | 1_3:-69342866 | Msa0137030:CDS |
| TTGTCTATCCTGTGATGCAA+AGG | 0.577128 | 1_3:-69344780 | Msa0137030:CDS |
| CAAAATAACTCTCCATGCAA+GGG | 0.584415 | 1_3:+69343557 | None:intergenic |
| AAGGGTCCGGAGGTGCCGGC+CGG | 0.586330 | 1_3:+69344736 | None:intergenic |
| AAAGATAACTGGGCTACAAG+TGG | 0.592394 | 1_3:-69343732 | Msa0137030:CDS |
| GGGCAAATGAATTGTCCGGC+CGG | 0.594066 | 1_3:-69344751 | Msa0137030:CDS |
| CTGATTCTTATGATCGAAAG+CGG | 0.599433 | 1_3:-69342563 | Msa0137030:three_prime_UTR |
| ATAACTCTCCATGCAAGGGA+AGG | 0.600276 | 1_3:+69343561 | None:intergenic |
| CAGCAAAATATTCAAGACCT+GGG | 0.612414 | 1_3:-69342865 | Msa0137030:CDS |
| ATCATTCTACAAAGATAACT+GGG | 0.615835 | 1_3:-69343742 | Msa0137030:CDS |
| GCGATCAAAAGCTACATGAT+GGG | 0.617031 | 1_3:-69344640 | Msa0137030:CDS |
| GGTTTCAGCTAATAGAAGAG+AGG | 0.617889 | 1_3:-69343766 | Msa0137030:CDS |
| AAAGAGTTTGCAACACTATG+GGG | 0.619686 | 1_3:-69344563 | Msa0137030:CDS |
| TTAATTATCAATTCACTGAG+AGG | 0.633365 | 1_3:+69342620 | None:intergenic |
| TATTGACAATCCAAGTACAA+TGG | 0.635806 | 1_3:-69342668 | Msa0137030:CDS |
| TCAGCATTACAGTAAACAAG+TGG | 0.650082 | 1_3:+69344815 | None:intergenic |
| TTGACAGATCGTTTGCGATG+TGG | 0.663808 | 1_3:+69344611 | None:intergenic |
| TGACAATCCAAGTACAATGG+AGG | 0.672160 | 1_3:-69342665 | Msa0137030:CDS |
| AGTTACACACAAGGGTCCGG+AGG | 0.682408 | 1_3:+69344726 | None:intergenic |
| AAGTTCACTACAAAGTAACC+AGG | 0.683289 | 1_3:-69343525 | Msa0137030:intron |
| GGGAGAAGACAATTCTATCG+GGG | 0.687222 | 1_3:-69343654 | Msa0137030:CDS |
| AACAGCACGAGTTACACACA+AGG | 0.692236 | 1_3:+69344717 | None:intergenic |
| TTGCATCACAGGATAGACAA+AGG | 0.703130 | 1_3:+69344783 | None:intergenic |
| ACAGCACGAGTTACACACAA+GGG | 0.726480 | 1_3:+69344718 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTTTATTCTTGATT+AGG | + | chr1_3:69344872-69344891 | None:intergenic | 10.0% |
| !!! | TTAAAAAGTTTTGTAAACAA+TGG | - | chr1_3:69342942-69342961 | Msa0137030:intron | 15.0% |
| !!! | TAAAAAGTTTTGTAAACAAT+GGG | - | chr1_3:69342943-69342962 | Msa0137030:intron | 15.0% |
| !! | AAATCTAAATATATTTCCAA+GGG | + | chr1_3:69344704-69344723 | None:intergenic | 15.0% |
| !! | AAAATCTAAATATATTTCCA+AGG | + | chr1_3:69344705-69344724 | None:intergenic | 15.0% |
| !!! | TTGGAAATATATTTAGATTT+TGG | - | chr1_3:69344704-69344723 | Msa0137030:intron | 15.0% |
| !! | ATATTAAAATATACCCTATA+TGG | - | chr1_3:69344785-69344804 | Msa0137030:CDS | 15.0% |
| !! | TATTAAAATATACCCTATAT+GGG | - | chr1_3:69344786-69344805 | Msa0137030:CDS | 15.0% |
| !! | ATAAAAATAAATTCATACTC+TGG | - | chr1_3:69344880-69344899 | Msa0137030:intron | 15.0% |
| !! | AAATGTAATTTGAATTAGAA+AGG | - | chr1_3:69345837-69345856 | Msa0137030:intron | 15.0% |
| !!! | ATGTTTATCTTGTTTGTAAA+GGG | + | chr1_3:69342317-69342336 | None:intergenic | 20.0% |
| !!! | GATTTTTAGTATACAATCAT+AGG | - | chr1_3:69342401-69342420 | Msa0137030:three_prime_UTR | 20.0% |
| !!! | TTGAATCACTTTTTCTTTTA+TGG | - | chr1_3:69343013-69343032 | Msa0137030:intron | 20.0% |
| !!! | TGTGGTTTTGATAATTAATA+TGG | + | chr1_3:69344227-69344246 | None:intergenic | 20.0% |
| !!! | GTGTTTTTAAGATTATTAGT+TGG | + | chr1_3:69344748-69344767 | None:intergenic | 20.0% |
| !! | ATAAGATATCACAGAAATTA+AGG | - | chr1_3:69344909-69344928 | Msa0137030:intron | 20.0% |
| !!! | TTATGTATGACTAATTTTGA+AGG | - | chr1_3:69345603-69345622 | Msa0137030:intron | 20.0% |
| !! | AAATTACATTTGAATGCTTT+CGG | + | chr1_3:69345828-69345847 | None:intergenic | 20.0% |
| !! | GATGTTTATCTTGTTTGTAA+AGG | + | chr1_3:69342318-69342337 | None:intergenic | 25.0% |
| !! | TGATGTAGATTTTCAAATCT+GGG | - | chr1_3:69342545-69342564 | Msa0137030:three_prime_UTR | 25.0% |
| ! | CTACTTTGTTGAAATTCAAA+TGG | - | chr1_3:69342622-69342641 | Msa0137030:three_prime_UTR | 25.0% |
| !! | GGTCTTAATAATTGTTGTTA+TGG | - | chr1_3:69343060-69343079 | Msa0137030:intron | 25.0% |
| ! | TATAGATTTCATCAGTGATA+AGG | + | chr1_3:69343796-69343815 | None:intergenic | 25.0% |
| ! | TTTACCTTCTCATAAATGAT+TGG | - | chr1_3:69343857-69343876 | Msa0137030:intron | 25.0% |
| !! | TGTAAATCATTTTCTAACTC+TGG | + | chr1_3:69343945-69343964 | None:intergenic | 25.0% |
| ! | ATTATCTTCATCCAAAATCT+TGG | - | chr1_3:69344025-69344044 | Msa0137030:intron | 25.0% |
| ! | TTATCTTCATCCAAAATCTT+GGG | - | chr1_3:69344026-69344045 | Msa0137030:intron | 25.0% |
| ! | GAATGCATTAATCATTTCTT+CGG | + | chr1_3:69344056-69344075 | None:intergenic | 25.0% |
| ! | GATTAATGCATTCTTAACTA+AGG | - | chr1_3:69344063-69344082 | Msa0137030:intron | 25.0% |
| ! | GTACTTTAACTAACACTTTA+AGG | + | chr1_3:69344130-69344149 | None:intergenic | 25.0% |
| !!! | AGCAGATTGTTGATTTAAAA+AGG | - | chr1_3:69344349-69344368 | Msa0137030:intron | 25.0% |
| ! | ATCATTCTACAAAGATAACT+GGG | - | chr1_3:69344394-69344413 | Msa0137030:CDS | 25.0% |
| ! | AAATGCAGAAGAAAAAGTTT+CGG | + | chr1_3:69344517-69344536 | None:intergenic | 25.0% |
| ! | AAAGGAAACATACATTATGT+GGG | - | chr1_3:69344672-69344691 | Msa0137030:intron | 25.0% |
| !!! | TTTAGATTTTGGTGTAGAAT+AGG | - | chr1_3:69344715-69344734 | Msa0137030:CDS | 25.0% |
| ! | TCATTTGAATTTCCCATATA+GGG | + | chr1_3:69344801-69344820 | None:intergenic | 25.0% |
| ! | ATCATTTGAATTTCCCATAT+AGG | + | chr1_3:69344802-69344821 | None:intergenic | 25.0% |
| !! | CTTTTATTATCAGAATTGGA+AGG | + | chr1_3:69344825-69344844 | None:intergenic | 25.0% |
| ! | CTTCCAATTCTGATAATAAA+AGG | - | chr1_3:69344823-69344842 | Msa0137030:CDS | 25.0% |
| !! | GTTCCTTTTATTATCAGAAT+TGG | + | chr1_3:69344829-69344848 | None:intergenic | 25.0% |
| ! | AAGGGTTAAAGTATGTAATA+GGG | + | chr1_3:69344977-69344996 | None:intergenic | 25.0% |
| ! | AAGTTTAAATAAATGTCTGC+TGG | + | chr1_3:69345107-69345126 | None:intergenic | 25.0% |
| !! | ATTGTTTAGTATTGAACGTT+AGG | - | chr1_3:69345187-69345206 | Msa0137030:intron | 25.0% |
| ! | TTAATTATCAATTCACTGAG+AGG | + | chr1_3:69345519-69345538 | None:intergenic | 25.0% |
| !! | TGATAATTAAAGTGCTTGAT+CGG | - | chr1_3:69345529-69345548 | Msa0137030:intron | 25.0% |
| !! | CAGATGATGATTTTCTATTA+TGG | + | chr1_3:69345556-69345575 | None:intergenic | 25.0% |
| ! | GAAGAATAAACATTATGTTC+AGG | - | chr1_3:69345644-69345663 | Msa0137030:intron | 25.0% |
| ! | ACATTATGTTCAGGAAAAAA+AGG | - | chr1_3:69345653-69345672 | Msa0137030:intron | 25.0% |
| !! | TCTTGAATGCAACAATTTTT+CGG | + | chr1_3:69345874-69345893 | None:intergenic | 25.0% |
| ATCACTTCTTTACTTTCTCT+TGG | - | chr1_3:69342335-69342354 | Msa0137030:three_prime_UTR | 30.0% | |
| TTCTTTACTTTCTCTTGGAT+TGG | - | chr1_3:69342340-69342359 | Msa0137030:three_prime_UTR | 30.0% | |
| ATCAGTGGAAATTTAGAAGT+AGG | + | chr1_3:69342529-69342548 | None:intergenic | 30.0% | |
| GATTTGAAAATCTACATCAG+TGG | + | chr1_3:69342544-69342563 | None:intergenic | 30.0% | |
| ! | CTGATGTAGATTTTCAAATC+TGG | - | chr1_3:69342544-69342563 | Msa0137030:three_prime_UTR | 30.0% |
| GATAGTGTATTATTAGCACA+TGG | + | chr1_3:69342599-69342618 | None:intergenic | 30.0% | |
| TGGTGTCTAAATAATTTCGT+GGG | + | chr1_3:69342650-69342669 | None:intergenic | 30.0% | |
| TTACATGTACGATATTGTGT+CGG | - | chr1_3:69342800-69342819 | Msa0137030:CDS | 30.0% | |
| ! | CATTGATGATATATGAGTGA+TGG | - | chr1_3:69342828-69342847 | Msa0137030:CDS | 30.0% |
| ATGGTTAGTATGATAGTATG+TGG | - | chr1_3:69342847-69342866 | Msa0137030:CDS | 30.0% | |
| TCTCAGATAACTGTTCAAAA+CGG | - | chr1_3:69343039-69343058 | Msa0137030:intron | 30.0% | |
| !! | TGCAACTATATTTGCTGTAA+AGG | - | chr1_3:69343096-69343115 | Msa0137030:intron | 30.0% |
| !! | TCTATTAACTCCACTTTTCA+TGG | - | chr1_3:69343145-69343164 | Msa0137030:intron | 30.0% |
| ! | TGTTTGAAGTCTACAACTAA+AGG | - | chr1_3:69343260-69343279 | Msa0137030:intron | 30.0% |
| AAGTCTACAACTAAAGGAAA+CGG | - | chr1_3:69343266-69343285 | Msa0137030:intron | 30.0% | |
| ACTATGGGGATTTGAATTTA+AGG | - | chr1_3:69343587-69343606 | Msa0137030:CDS | 30.0% | |
| AGTACCAATCATTTATGAGA+AGG | + | chr1_3:69343864-69343883 | None:intergenic | 30.0% | |
| ! | GATTTTGGATGAAGATAATG+TGG | + | chr1_3:69344024-69344043 | None:intergenic | 30.0% |
| AAGGAGTTCGTAACAATTAT+AGG | - | chr1_3:69344082-69344101 | Msa0137030:intron | 30.0% | |
| AGTTCGTAACAATTATAGGA+AGG | - | chr1_3:69344086-69344105 | Msa0137030:intron | 30.0% | |
| !! | AAGTACGATGATTCTTGTTT+TGG | - | chr1_3:69344144-69344163 | Msa0137030:intron | 30.0% |
| !!! | GATTCTTGTTTTGGTTTCTA+AGG | - | chr1_3:69344153-69344172 | Msa0137030:intron | 30.0% |
| TATCAAAACCACAAGTACAA+TGG | - | chr1_3:69344234-69344253 | Msa0137030:intron | 30.0% | |
| GATCATTCTACAAAGATAAC+TGG | - | chr1_3:69344393-69344412 | Msa0137030:intron | 30.0% | |
| ! | TATTTTGCTACTAATCTGCT+GGG | - | chr1_3:69344462-69344481 | Msa0137030:intron | 30.0% |
| AATGCAGAAGAAAAAGTTTC+GGG | + | chr1_3:69344516-69344535 | None:intergenic | 30.0% | |
| TTTGTCTTCATCTTCAGTTA+TGG | - | chr1_3:69344551-69344570 | Msa0137030:CDS | 30.0% | |
| TGTATGTTTCCTTTCAATTG+TGG | + | chr1_3:69344666-69344685 | None:intergenic | 30.0% | |
| GAAAGGAAACATACATTATG+TGG | - | chr1_3:69344671-69344690 | Msa0137030:intron | 30.0% | |
| AAGGAAACATACATTATGTG+GGG | - | chr1_3:69344673-69344692 | Msa0137030:intron | 30.0% | |
| AGAGGGATTGATCAAAATAA+TGG | + | chr1_3:69344951-69344970 | None:intergenic | 30.0% | |
| AGGGTTAAAGTATGTAATAG+GGG | + | chr1_3:69344976-69344995 | None:intergenic | 30.0% | |
| CAAGGGTTAAAGTATGTAAT+AGG | + | chr1_3:69344978-69344997 | None:intergenic | 30.0% | |
| ! | GTTTTACTTCTAGTCAAAAG+TGG | - | chr1_3:69345216-69345235 | Msa0137030:intron | 30.0% |
| TTTGTTGATGTTTGCAGTTA+TGG | - | chr1_3:69345248-69345267 | Msa0137030:intron | 30.0% | |
| CTTAACATTCCAAAACTATG+AGG | - | chr1_3:69345345-69345364 | Msa0137030:intron | 30.0% | |
| ! | CAAATAGTTCCTCATAGTTT+TGG | + | chr1_3:69345357-69345376 | None:intergenic | 30.0% |
| CAAAACTATGAGGAACTATT+TGG | - | chr1_3:69345355-69345374 | Msa0137030:intron | 30.0% | |
| TATTGACAATCCAAGTACAA+TGG | - | chr1_3:69345468-69345487 | Msa0137030:intron | 30.0% | |
| CTTACAACTTCTATCAAAAG+AGG | - | chr1_3:69345709-69345728 | Msa0137030:intron | 30.0% | |
| ! | TTCTTGTTGTCCATTATTGT+TGG | - | chr1_3:69345786-69345805 | Msa0137030:intron | 30.0% |
| ATTTCCATGACCAACAATAA+TGG | + | chr1_3:69345799-69345818 | None:intergenic | 30.0% | |
| ACATGTACAGTTAGATTCTG+AGG | + | chr1_3:69342253-69342272 | None:intergenic | 35.0% | |
| GAGAAAAAAAGTGAGAGAGA+TGG | + | chr1_3:69342373-69342392 | None:intergenic | 35.0% | |
| TTCAAATCTGGGCATATGTA+TGG | - | chr1_3:69342556-69342575 | Msa0137030:three_prime_UTR | 35.0% | |
| GTATTATTAGCACATGGAAG+TGG | + | chr1_3:69342593-69342612 | None:intergenic | 35.0% | |
| GTGGTGTCTAAATAATTTCG+TGG | + | chr1_3:69342651-69342670 | None:intergenic | 35.0% | |
| CAAGTCTCGCTAAATTTATG+TGG | + | chr1_3:69342670-69342689 | None:intergenic | 35.0% | |
| TTCTCAACACACACTCAAAT+TGG | + | chr1_3:69342705-69342724 | None:intergenic | 35.0% | |
| TGTCAGATTTCCCATTGAAT+TGG | - | chr1_3:69342967-69342986 | Msa0137030:intron | 35.0% | |
| TCCTATAGCTCCAATTCAAT+GGG | + | chr1_3:69342980-69342999 | None:intergenic | 35.0% | |
| TCAGCATTACAGTAAACAAG+TGG | + | chr1_3:69343324-69343343 | None:intergenic | 35.0% | |
| CGATCTGTCAAATCTTTCAT+TGG | - | chr1_3:69343537-69343556 | Msa0137030:CDS | 35.0% | |
| CAAAGAGTTTGCAACACTAT+GGG | - | chr1_3:69343572-69343591 | Msa0137030:CDS | 35.0% | |
| AAAGAGTTTGCAACACTATG+GGG | - | chr1_3:69343573-69343592 | Msa0137030:CDS | 35.0% | |
| TCTGGTGACAATCATGATAA+GGG | - | chr1_3:69343720-69343739 | Msa0137030:CDS | 35.0% | |
| AGATTTCATCAGTGATAAGG+AGG | + | chr1_3:69343793-69343812 | None:intergenic | 35.0% | |
| ! | TTTTATGCTGATCACAGCAT+TGG | - | chr1_3:69343966-69343985 | Msa0137030:intron | 35.0% |
| TTTGGATGAAGATAATGTGG+AGG | + | chr1_3:69344021-69344040 | None:intergenic | 35.0% | |
| GTTTCAGCTAATAGAAGAGA+GGG | - | chr1_3:69344371-69344390 | Msa0137030:intron | 35.0% | |
| ! | GTATTTTGCTACTAATCTGC+TGG | - | chr1_3:69344461-69344480 | Msa0137030:intron | 35.0% |
| ATGCAGAAGAAAAAGTTTCG+GGG | + | chr1_3:69344515-69344534 | None:intergenic | 35.0% | |
| CAAAATAACTCTCCATGCAA+GGG | + | chr1_3:69344582-69344601 | None:intergenic | 35.0% | |
| AAGTTCACTACAAAGTAACC+AGG | - | chr1_3:69344611-69344630 | Msa0137030:CDS | 35.0% | |
| TTAGGATTACTTGACGCTTA+AGG | + | chr1_3:69344854-69344873 | None:intergenic | 35.0% | |
| GGGTTAAAGTATGTAATAGG+GGG | + | chr1_3:69344975-69344994 | None:intergenic | 35.0% | |
| GAAATCATCTCGACAAACAA+GGG | + | chr1_3:69344995-69345014 | None:intergenic | 35.0% | |
| TGAAATCATCTCGACAAACA+AGG | + | chr1_3:69344996-69345015 | None:intergenic | 35.0% | |
| GACTATTGAAGTCAAATGTC+AGG | + | chr1_3:69345024-69345043 | None:intergenic | 35.0% | |
| ! | GACATTTGACTTCAATAGTC+TGG | - | chr1_3:69345024-69345043 | Msa0137030:intron | 35.0% |
| CTGTTTGATTAATGTGTGCA+AGG | + | chr1_3:69345058-69345077 | None:intergenic | 35.0% | |
| CAGCAAAATATTCAAGACCT+GGG | - | chr1_3:69345271-69345290 | Msa0137030:intron | 35.0% | |
| AACTATGAGGAACTATTTGG+AGG | - | chr1_3:69345358-69345377 | Msa0137030:intron | 35.0% | |
| GATCCAATTAGAGTGATGTT+TGG | - | chr1_3:69345388-69345407 | Msa0137030:intron | 35.0% | |
| AGACGTCTCTTATTCTTCAT+TGG | - | chr1_3:69345417-69345436 | Msa0137030:intron | 35.0% | |
| CTCTTATTCTTCATTGGAGA+AGG | - | chr1_3:69345423-69345442 | Msa0137030:intron | 35.0% | |
| AATTAGACCTCCATTGTACT+TGG | + | chr1_3:69345481-69345500 | None:intergenic | 35.0% | |
| CTGATTCTTATGATCGAAAG+CGG | - | chr1_3:69345573-69345592 | Msa0137030:intron | 35.0% | |
| TTGTCCATTATTGTTGGTCA+TGG | - | chr1_3:69345792-69345811 | Msa0137030:intron | 35.0% | |
| TTTATGGGAGTTAAGAGTCG+TGG | - | chr1_3:69342503-69342522 | Msa0137030:three_prime_UTR | 40.0% | |
| TCCCATTGAATTGGAGCTAT+AGG | - | chr1_3:69342976-69342995 | Msa0137030:intron | 40.0% | |
| CTCCTATAGCTCCAATTCAA+TGG | + | chr1_3:69342981-69343000 | None:intergenic | 40.0% | |
| TGAATTGGAGCTATAGGAGT+TGG | - | chr1_3:69342982-69343001 | Msa0137030:intron | 40.0% | |
| CCTGTTTAGTCCATGAAAAG+TGG | + | chr1_3:69343158-69343177 | None:intergenic | 40.0% | |
| !! | CCACTTTTCATGGACTAAAC+AGG | - | chr1_3:69343155-69343174 | Msa0137030:intron | 40.0% |
| GAGATTTCTCCTGATGCAAA+TGG | - | chr1_3:69343197-69343216 | Msa0137030:intron | 40.0% | |
| ! | TTGTAGATGCCATTTGCATC+AGG | + | chr1_3:69343209-69343228 | None:intergenic | 40.0% |
| ! | GTGAATTTTGCACAGCATTG+AGG | - | chr1_3:69343298-69343317 | Msa0137030:intron | 40.0% |
| TTGCATCACAGGATAGACAA+AGG | + | chr1_3:69343356-69343375 | None:intergenic | 40.0% | |
| TTGTCTATCCTGTGATGCAA+AGG | - | chr1_3:69343356-69343375 | Msa0137030:intron | 40.0% | |
| CATTGGGCAAATGAATTGTC+CGG | - | chr1_3:69343381-69343400 | Msa0137030:intron | 40.0% | |
| TGCGATCAAAAGCTACATGA+TGG | - | chr1_3:69343495-69343514 | Msa0137030:intron | 40.0% | |
| GCGATCAAAAGCTACATGAT+GGG | - | chr1_3:69343496-69343515 | Msa0137030:intron | 40.0% | |
| CCATAGTGTTGCAAACTCTT+TGG | + | chr1_3:69343574-69343593 | None:intergenic | 40.0% | |
| CCAAAGAGTTTGCAACACTA+TGG | - | chr1_3:69343571-69343590 | Msa0137030:CDS | 40.0% | |
| !! | TGAAAACAGTGTCGATCAGA+AGG | - | chr1_3:69343614-69343633 | Msa0137030:CDS | 40.0% |
| GTCTGGTGACAATCATGATA+AGG | - | chr1_3:69343719-69343738 | Msa0137030:CDS | 40.0% | |
| ATGAAGCGATGAATCTTGTG+AGG | - | chr1_3:69343885-69343904 | Msa0137030:intron | 40.0% | |
| ! | AATGTGGAGGCTCACATTTT+AGG | + | chr1_3:69344008-69344027 | None:intergenic | 40.0% |
| ! | CTTCGGTTTTCCCAAGATTT+TGG | + | chr1_3:69344039-69344058 | None:intergenic | 40.0% |
| CAAAACCACAAGTACAATGG+AGG | - | chr1_3:69344237-69344256 | Msa0137030:intron | 40.0% | |
| GGTTTCAGCTAATAGAAGAG+AGG | - | chr1_3:69344370-69344389 | Msa0137030:intron | 40.0% | |
| AAAGATAACTGGGCTACAAG+TGG | - | chr1_3:69344404-69344423 | Msa0137030:CDS | 40.0% | |
| CTGGGAGAAGACAATTCTAT+CGG | - | chr1_3:69344480-69344499 | Msa0137030:intron | 40.0% | |
| TGGGAGAAGACAATTCTATC+GGG | - | chr1_3:69344481-69344500 | Msa0137030:intron | 40.0% | |
| CCAAAATAACTCTCCATGCA+AGG | + | chr1_3:69344583-69344602 | None:intergenic | 40.0% | |
| ! | CCTTGCATGGAGAGTTATTT+TGG | - | chr1_3:69344580-69344599 | Msa0137030:CDS | 40.0% |
| GGATAGATAAGTATCTGACC+TGG | + | chr1_3:69344632-69344651 | None:intergenic | 40.0% | |
| TGTTGTGAGCCACAATTGAA+AGG | - | chr1_3:69344654-69344673 | Msa0137030:intron | 40.0% | |
| AGTATGTAATAGGGGGAAGA+GGG | + | chr1_3:69344968-69344987 | None:intergenic | 40.0% | |
| AAGTATGTAATAGGGGGAAG+AGG | + | chr1_3:69344969-69344988 | None:intergenic | 40.0% | |
| GCAGCAAAATATTCAAGACC+TGG | - | chr1_3:69345270-69345289 | Msa0137030:intron | 40.0% | |
| CAAGTTCTTCACATATTCCC+AGG | + | chr1_3:69345291-69345310 | None:intergenic | 40.0% | |
| TGGAATGTTAAGTCAACGTC+AGG | + | chr1_3:69345337-69345356 | None:intergenic | 40.0% | |
| CCACCAAACATCACTCTAAT+TGG | + | chr1_3:69345394-69345413 | None:intergenic | 40.0% | |
| CCAATTAGAGTGATGTTTGG+TGG | - | chr1_3:69345391-69345410 | Msa0137030:intron | 40.0% | |
| TGACAATCCAAGTACAATGG+AGG | - | chr1_3:69345471-69345490 | Msa0137030:intron | 40.0% | |
| CTGTGATGCAAAGGTCCATT+GGG | - | chr1_3:69343365-69343384 | Msa0137030:intron | 45.0% | |
| CGGACAATTCATTTGCCCAA+TGG | + | chr1_3:69343383-69343402 | None:intergenic | 45.0% | |
| ACAGCACGAGTTACACACAA+GGG | + | chr1_3:69343421-69343440 | None:intergenic | 45.0% | |
| AACAGCACGAGTTACACACA+AGG | + | chr1_3:69343422-69343441 | None:intergenic | 45.0% | |
| TCTTGCGTATGTTCAGTGCT+TGG | - | chr1_3:69343446-69343465 | Msa0137030:intron | 45.0% | |
| TTGACAGATCGTTTGCGATG+TGG | + | chr1_3:69343528-69343547 | None:intergenic | 45.0% | |
| GTTGCAAACTCTTTGGCAGA+AGG | + | chr1_3:69343567-69343586 | None:intergenic | 45.0% | |
| AAGCGATGAATCTTGTGAGG+AGG | - | chr1_3:69343888-69343907 | Msa0137030:intron | 45.0% | |
| TCAGACCTCCATTGTACTTG+TGG | + | chr1_3:69344245-69344264 | None:intergenic | 45.0% | |
| GGGAGAAGACAATTCTATCG+GGG | - | chr1_3:69344482-69344501 | Msa0137030:intron | 45.0% | |
| ATAACTCTCCATGCAAGGGA+AGG | + | chr1_3:69344578-69344597 | None:intergenic | 45.0% | |
| TCAATTGTGGCTCACAACAG+TGG | + | chr1_3:69344653-69344672 | None:intergenic | 45.0% | |
| ATTATGTGGGGTACATCCCT+TGG | - | chr1_3:69344685-69344704 | Msa0137030:intron | 45.0% | |
| !!! | ACTATTTATTTTTATTTTTA+TGG | - | chr1_3:69342487-69342506 | Msa0137030:three_prime_UTR | 5.0% |
| !!! | CTATTTATTTTTATTTTTAT+GGG | - | chr1_3:69342488-69342507 | Msa0137030:three_prime_UTR | 5.0% |
| !!! | TTTAAAATAATATTTTAACA+TGG | + | chr1_3:69345905-69345924 | None:intergenic | 5.0% |
| CCAATGGACCTTTGCATCAC+AGG | + | chr1_3:69343367-69343386 | None:intergenic | 50.0% | |
| CCTGTGATGCAAAGGTCCAT+TGG | - | chr1_3:69343364-69343383 | Msa0137030:intron | 50.0% | |
| ACGAGTTACACACAAGGGTC+CGG | + | chr1_3:69343416-69343435 | None:intergenic | 50.0% | |
| TCAGTCACTTCAACGACGTC+TGG | - | chr1_3:69343702-69343721 | Msa0137030:CDS | 50.0% | |
| AAGGGATCCAGCAGTCAACT+AGG | - | chr1_3:69343738-69343757 | Msa0137030:CDS | 50.0% | |
| ATCCAGCAGTCAACTAGGTC+AGG | - | chr1_3:69343743-69343762 | Msa0137030:CDS | 50.0% | |
| TACCTGACCTAGTTGACTGC+TGG | + | chr1_3:69343748-69343767 | None:intergenic | 50.0% | |
| ! | GTGGAGGCTCACATTTTAGG+AGG | + | chr1_3:69344005-69344024 | None:intergenic | 50.0% |
| GTTATGGACCTTCCCTTGCA+TGG | - | chr1_3:69344567-69344586 | Msa0137030:CDS | 50.0% | |
| GGGCAAATGAATTGTCCGGC+CGG | - | chr1_3:69343385-69343404 | Msa0137030:intron | 55.0% | |
| AGTTACACACAAGGGTCCGG+AGG | + | chr1_3:69343413-69343432 | None:intergenic | 55.0% | |
| AATTGTCCGGCCGGCACCTC+CGG | - | chr1_3:69343394-69343413 | Msa0137030:intron | 65.0% | |
| ! | ACACAAGGGTCCGGAGGTGC+CGG | + | chr1_3:69343407-69343426 | None:intergenic | 65.0% |
| !! | AAGGGTCCGGAGGTGCCGGC+CGG | + | chr1_3:69343403-69343422 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 69342217 | 69345941 | 69342217 | ID=Msa0137030;Name=Msa0137030 |
| chr1_3 | mRNA | 69342217 | 69345941 | 69342217 | ID=Msa0137030-mRNA-1;Parent=Msa0137030;Name=Msa0137030-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.33|0.28|0.85|0.33|0.42|7|443|337 |
| chr1_3 | exon | 69342217 | 69342893 | 69342217 | ID=Msa0137030-mRNA-1:exon:23975;Parent=Msa0137030-mRNA-1 |
| chr1_3 | exon | 69343526 | 69343846 | 69343526 | ID=Msa0137030-mRNA-1:exon:23974;Parent=Msa0137030-mRNA-1 |
| chr1_3 | exon | 69344394 | 69344471 | 69344394 | ID=Msa0137030-mRNA-1:exon:23973;Parent=Msa0137030-mRNA-1 |
| chr1_3 | exon | 69344487 | 69344667 | 69344487 | ID=Msa0137030-mRNA-1:exon:23972;Parent=Msa0137030-mRNA-1 |
| chr1_3 | exon | 69344707 | 69344889 | 69344707 | ID=Msa0137030-mRNA-1:exon:23971;Parent=Msa0137030-mRNA-1 |
| chr1_3 | exon | 69345736 | 69345748 | 69345736 | ID=Msa0137030-mRNA-1:exon:23970;Parent=Msa0137030-mRNA-1 |
| chr1_3 | exon | 69345938 | 69345941 | 69345938 | ID=Msa0137030-mRNA-1:exon:23969;Parent=Msa0137030-mRNA-1 |
| chr1_3 | CDS | 69345938 | 69345941 | 69345938 | ID=Msa0137030-mRNA-1:cds;Parent=Msa0137030-mRNA-1 |
| chr1_3 | CDS | 69345736 | 69345748 | 69345736 | ID=Msa0137030-mRNA-1:cds;Parent=Msa0137030-mRNA-1 |
| chr1_3 | CDS | 69344707 | 69344889 | 69344707 | ID=Msa0137030-mRNA-1:cds;Parent=Msa0137030-mRNA-1 |
| chr1_3 | CDS | 69344487 | 69344667 | 69344487 | ID=Msa0137030-mRNA-1:cds;Parent=Msa0137030-mRNA-1 |
| chr1_3 | CDS | 69344394 | 69344471 | 69344394 | ID=Msa0137030-mRNA-1:cds;Parent=Msa0137030-mRNA-1 |
| chr1_3 | CDS | 69343526 | 69343846 | 69343526 | ID=Msa0137030-mRNA-1:cds;Parent=Msa0137030-mRNA-1 |
| chr1_3 | CDS | 69342660 | 69342893 | 69342660 | ID=Msa0137030-mRNA-1:cds;Parent=Msa0137030-mRNA-1 |
| chr1_3 | three_prime_UTR | 69342217 | 69342659 | 69342217 | ID=Msa0137030-mRNA-1:three_prime_utr;Parent=Msa0137030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
