AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1422490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422490 MtrunA17_Chr1g0203761 89.735 302 2 1 1 273 1 302 0.0 536
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422490 AT5G52100.1 67.434 304 62 5 1 273 1 298 2.45e-137 389

Find 103 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGAGACCATCGTATAATT+TGG 0.179028 tig0025415:-14684 None:intergenic
GTGGAACAGGTTGTAATAAA+TGG 0.207909 tig0025415:+12045 Msa1422490:intron
AAATGACCTTACCATGGTTT+TGG 0.224480 tig0025415:+12450 Msa1422490:CDS
AAAGGCAAGGGGTCAAGTTT+TGG 0.246017 tig0025415:+13811 Msa1422490:intron
TAGAGAGATTGTTGGCAATT+TGG 0.249550 tig0025415:-13642 None:intergenic
TATATAGGCTTATCTTCTTT+TGG 0.267528 tig0025415:+11793 Msa1422490:five_prime_UTR
GTTTAAACCGTTGTTACTTC+TGG 0.308865 tig0025415:+14812 Msa1422490:three_prime_UTR
AGCAATCAATTTAGCTAGTT+AGG 0.316369 tig0025415:+14589 Msa1422490:three_prime_UTR
TTGAGAATTCAAGTAGTTGA+TGG 0.320100 tig0025415:-11864 None:intergenic
GTGGTCTTTAAACCTGTTGT+AGG 0.322301 tig0025415:+14726 Msa1422490:three_prime_UTR
CAATTTCGACATTGCGGTAA+TGG 0.331384 tig0025415:-13352 None:intergenic
AATGGAGCAGCAAAGGAAAT+AGG 0.336907 tig0025415:+12063 Msa1422490:CDS
TCTTAAACTTGATACACTAA+TGG 0.344826 tig0025415:+14914 Msa1422490:three_prime_UTR
TTCTTGAAGAACTTAGTATA+CGG 0.352631 tig0025415:+14332 Msa1422490:intron
CAACATGTTGGGGAAGATAT+TGG 0.357960 tig0025415:+12150 Msa1422490:CDS
CAAATATCATAGACAAGGTT+TGG 0.361438 tig0025415:+14431 Msa1422490:three_prime_UTR
GACTACAACCGCTGTGGCCT+TGG 0.364137 tig0025415:-12592 None:intergenic
ACTGTATAGGCAACAGCATT+TGG 0.373770 tig0025415:+12985 Msa1422490:intron
ACCTATACAAAGCAATATAA+AGG 0.391589 tig0025415:+11934 Msa1422490:CDS
CTGAGACCATCGTATAATTT+GGG 0.401558 tig0025415:-14683 None:intergenic
GTTGGCAATTTGGTTTGCTT+CGG 0.404040 tig0025415:-13632 None:intergenic
ATGTGTGTCACATAATATAT+AGG 0.404813 tig0025415:+11778 Msa1422490:five_prime_UTR
TGGAATTCGCGTGCACAGTT+TGG 0.408268 tig0025415:+13838 Msa1422490:CDS
CTATTGATACTCAACATGTT+GGG 0.408524 tig0025415:+12139 Msa1422490:CDS
CTGCAACAATATTGATCCTA+TGG 0.409023 tig0025415:-13306 None:intergenic
AATGACTTTATTGTATGTTC+TGG 0.411404 tig0025415:-14544 None:intergenic
AGTAGTTGATGGAATGAAAC+TGG 0.415845 tig0025415:-11853 None:intergenic
TGGTCTTTAAACCTGTTGTA+GGG 0.416767 tig0025415:+14727 Msa1422490:three_prime_UTR
CCACCCCACAAGTTTCTCAT+TGG 0.425747 tig0025415:+14840 Msa1422490:three_prime_UTR
ATCATATGCTAATGCTACTT+TGG 0.432488 tig0025415:+14373 Msa1422490:exon
GCCAGAGGAATGGAAGTTGC+TGG 0.433583 tig0025415:+12114 Msa1422490:CDS
TCACCCCTTGCTCACCATGC+TGG 0.433731 tig0025415:-13082 None:intergenic
GGTATATGACAATGTAAAAC+AGG 0.437708 tig0025415:+12635 Msa1422490:CDS
GTTAAATTCAAGCGACTCAC+TGG 0.440125 tig0025415:+14395 Msa1422490:three_prime_UTR
TCCAGCAACTTCCATTCCTC+TGG 0.450267 tig0025415:-12115 None:intergenic
GCCTTTATATTGCTTTGTAT+AGG 0.451850 tig0025415:-11935 None:intergenic
TCTTACATTTGCATTAGCCT+TGG 0.452314 tig0025415:-13381 None:intergenic
CAACTACTTGAATTCTCAAA+TGG 0.460268 tig0025415:+11868 Msa1422490:CDS
TCTAATTCAACCCCTACAAC+AGG 0.462953 tig0025415:-14738 None:intergenic
TTGTATAGGTTGTGCTGAGC+AGG 0.468509 tig0025415:-11921 None:intergenic
ATCAAAATATTACCCAGCTT+CGG 0.470196 tig0025415:+11751 None:intergenic
ATTTGGTTTGCTTCGGCCGA+TGG 0.481953 tig0025415:-13625 None:intergenic
ACCGAGGTTAGAGAGATTGT+TGG 0.485133 tig0025415:-13650 None:intergenic
CACAGAGGCTTGAGCAGCAA+TGG 0.497689 tig0025415:+11817 Msa1422490:exon
GCTATTGATACTCAACATGT+TGG 0.498878 tig0025415:+12138 Msa1422490:CDS
ACCGTATCTAATTTGATTCG+CGG 0.502405 tig0025415:-13030 None:intergenic
GGAATGAAACTGGCAGCTTA+AGG 0.502410 tig0025415:-11843 None:intergenic
AGACTCCTCAACAGATGTCT+TGG 0.508028 tig0025415:+13690 Msa1422490:CDS
GTTGCTCCAACGCTTTCCAT+AGG 0.508224 tig0025415:+13290 Msa1422490:CDS
GACACACATATAGCCGAAGC+TGG 0.512952 tig0025415:-11764 None:intergenic
ACTATAATGACAGGGTGTCT+TGG 0.515706 tig0025415:+13268 Msa1422490:intron
TTTCCTATAGCTTTGTGGCA+TGG 0.525843 tig0025415:+12402 Msa1422490:intron
AGGATCAATATTGTTGCAGC+AGG 0.526093 tig0025415:+13310 Msa1422490:CDS
TGTAATAAATGGAGCAGCAA+AGG 0.530888 tig0025415:+12056 Msa1422490:CDS
CAATGAGAAACTTGTGGGGT+GGG 0.538274 tig0025415:-14839 None:intergenic
TATGATATTTGTCAACAAGC+TGG 0.541742 tig0025415:-14419 None:intergenic
GCCAACAATCTCTCTAACCT+CGG 0.544225 tig0025415:+13649 Msa1422490:CDS
ACATTGTCATATACCGCGGA+AGG 0.549371 tig0025415:-12627 None:intergenic
ATATATGCAGTTGTTATACA+AGG 0.549600 tig0025415:-15009 None:intergenic
AGCAGTATTAGCTGTGACAA+AGG 0.549949 tig0025415:+12092 Msa1422490:CDS
TTAGTAATGTGTAAGTCTCT+TGG 0.555667 tig0025415:+14784 Msa1422490:three_prime_UTR
TGTTGGGGAAGATATTGGAC+AGG 0.558324 tig0025415:+12155 Msa1422490:CDS
AGTAGCATGTAAGTCTTTCG+CGG 0.561771 tig0025415:+14704 Msa1422490:three_prime_UTR
ATGGTAAGGTCATTTAGTAT+AGG 0.563180 tig0025415:-12442 None:intergenic
TTACCGCAATGTCGAAATTG+TGG 0.563978 tig0025415:+13355 Msa1422490:CDS
TGTTATACAGGATCTTCCAT+CGG 0.565260 tig0025415:+13609 Msa1422490:intron
GTAATGTGTAAGTCTCTTGG+TGG 0.570721 tig0025415:+14787 Msa1422490:three_prime_UTR
TGTCGAAATTGTGGAATCCA+AGG 0.571619 tig0025415:+13364 Msa1422490:CDS
ATTGATCCTATGGAAAGCGT+TGG 0.571844 tig0025415:-13296 None:intergenic
TAGAGCCCAAAACCATGGTA+AGG 0.573337 tig0025415:-12456 None:intergenic
TAGTCCAATGAGAAACTTGT+GGG 0.575516 tig0025415:-14844 None:intergenic
AAGTGAACTGTTGTACTAGA+GGG 0.580769 tig0025415:-13875 None:intergenic
GAAGAACTTAGTATACGGCT+TGG 0.581279 tig0025415:+14337 Msa1422490:intron
AAAGTGAACTGTTGTACTAG+AGG 0.590884 tig0025415:-13876 None:intergenic
TGTGACAAAGGCCAGAGGAA+TGG 0.593244 tig0025415:+12104 Msa1422490:CDS
GGTCTTTAAACCTGTTGTAG+GGG 0.593526 tig0025415:+14728 Msa1422490:three_prime_UTR
GTTGTACTAGAGGGAAGCCC+TGG 0.594961 tig0025415:-13866 None:intergenic
CCAATGAGAAACTTGTGGGG+TGG 0.596788 tig0025415:-14840 None:intergenic
GCCGCGAATCAAATTAGATA+CGG 0.602862 tig0025415:+13029 Msa1422490:CDS
TATTGATACTCAACATGTTG+GGG 0.603145 tig0025415:+12140 Msa1422490:CDS
TTTAGTATAGGTATTTCAAG+AGG 0.603621 tig0025415:-12430 None:intergenic
ATTATCAGCATTCTGTGAGA+AGG 0.611346 tig0025415:+13059 Msa1422490:CDS
GACCATCGTATAATTTGGGT+AGG 0.614263 tig0025415:-14679 None:intergenic
ACCATCGTATAATTTGGGTA+GGG 0.620846 tig0025415:-14678 None:intergenic
TATACTAAATGACCTTACCA+TGG 0.623911 tig0025415:+12444 Msa1422490:CDS
CATTGTCATATACCGCGGAA+GGG 0.627711 tig0025415:-12626 None:intergenic
ACACACATATAGCCGAAGCT+GGG 0.628344 tig0025415:-11763 None:intergenic
ATTCTGTGAGAAGGCCAGCA+TGG 0.629094 tig0025415:+13068 Msa1422490:CDS
CCTTACCAAGACATCTGTTG+AGG 0.630824 tig0025415:-13695 None:intergenic
ATTCCACAATTTCGACATTG+CGG 0.643338 tig0025415:-13358 None:intergenic
CTCTGTTATAGATTTGACCG+AGG 0.649127 tig0025415:-13666 None:intergenic
AGATATAGAGCCCAAAACCA+TGG 0.651854 tig0025415:-12461 None:intergenic
CGATTTCACAGACCCTTCCG+CGG 0.655051 tig0025415:+12614 Msa1422490:CDS
GTTGACAAATATCATAGACA+AGG 0.661172 tig0025415:+14426 Msa1422490:three_prime_UTR
ATAGTCCAATGAGAAACTTG+TGG 0.675318 tig0025415:-14845 None:intergenic
ACCCTACCCAAATTATACGA+TGG 0.676435 tig0025415:+14677 Msa1422490:three_prime_UTR
TATCACACGACAAAGGCAAG+GGG 0.699381 tig0025415:+13800 Msa1422490:intron
AGCATGTAAGTCTTTCGCGG+TGG 0.707019 tig0025415:+14707 Msa1422490:three_prime_UTR
GGGATCACCAGAAGTAACAA+CGG 0.716525 tig0025415:-14819 None:intergenic
TTTGCAGTCCAAGGCCACAG+CGG 0.733235 tig0025415:+12584 Msa1422490:intron
TTAGCTGTGACAAAGGCCAG+AGG 0.735270 tig0025415:+12099 Msa1422490:CDS
GAAATCGACTACAACCGCTG+TGG 0.737468 tig0025415:-12598 None:intergenic
AGTCCAATGAGAAACTTGTG+GGG 0.805148 tig0025415:-14843 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATTTAGTCAATTTA+AGG + tig0025415:14101-14120 Msa1422490:intron 10.0%
!! TTATATAAGCACTTAATTAA+CGG + tig0025415:12364-12383 Msa1422490:intron 15.0%
!! CTATAGGAAAATAAAAAATT+AGG - tig0025415:12392-12411 None:intergenic 15.0%
!!! ACATATTTTAAAATTTGAGT+TGG - tig0025415:14765-14784 None:intergenic 15.0%
!!! AATTTCTGTTATGTAATTTT+AGG - tig0025415:14979-14998 None:intergenic 15.0%
!!! CAAAGTGTTAATTTTGAAAA+TGG - tig0025415:11974-11993 None:intergenic 20.0%
!!! TGTTATAAGTTGTTTTCATA+AGG - tig0025415:12265-12284 None:intergenic 20.0%
!! TATATAAGCACTTAATTAAC+GGG + tig0025415:12365-12384 Msa1422490:intron 20.0%
!! TTGTAGATACAAAAAGATTA+AGG - tig0025415:12546-12565 None:intergenic 20.0%
!!! TTCATCTTAAATGCATATTT+TGG - tig0025415:12699-12718 None:intergenic 20.0%
!! AAGATGAAGTGTAAATTAAA+TGG + tig0025415:12711-12730 Msa1422490:intron 20.0%
!! AAGACTGATAGTTTATTTAT+TGG + tig0025415:12743-12762 Msa1422490:intron 20.0%
!! AGACTGATAGTTTATTTATT+GGG + tig0025415:12744-12763 Msa1422490:intron 20.0%
!!! TAAATAGATTTTACCATAAG+TGG - tig0025415:13445-13464 None:intergenic 20.0%
!! TTATGGTAAAATCTATTTAG+AGG + tig0025415:13446-13465 Msa1422490:intron 20.0%
!!! TTATATTTTCGTGAGTAAAT+TGG - tig0025415:13958-13977 None:intergenic 20.0%
!! TAATGTGTAAGAGAAAAATT+CGG - tig0025415:14482-14501 None:intergenic 20.0%
!!! TCATATTACTTTTTTGCAAA+AGG + tig0025415:14876-14895 Msa1422490:three_prime_UTR 20.0%
! ATGTGTGTCACATAATATAT+AGG + tig0025415:11778-11797 Msa1422490:five_prime_UTR 25.0%
!! TATATAGGCTTATCTTCTTT+TGG + tig0025415:11793-11812 Msa1422490:five_prime_UTR 25.0%
! ACCTATACAAAGCAATATAA+AGG + tig0025415:11934-11953 Msa1422490:CDS 25.0%
! ATATAAGCACTTAATTAACG+GGG + tig0025415:12366-12385 Msa1422490:intron 25.0%
!!! TTTATTTTCCTATAGCTTTG+TGG + tig0025415:12397-12416 Msa1422490:intron 25.0%
! TTTAGTATAGGTATTTCAAG+AGG - tig0025415:12433-12452 None:intergenic 25.0%
! CGAACATACTTATATATTGT+TGG + tig0025415:12673-12692 Msa1422490:intron 25.0%
! AGTGTAAATTAAATGGTTCT+TGG + tig0025415:12718-12737 Msa1422490:intron 25.0%
!! TTTTCATACTTCATAGCTAA+AGG + tig0025415:12842-12861 Msa1422490:intron 25.0%
!! ATTTCAAGTGATAGGATAAT+AGG + tig0025415:12870-12889 Msa1422490:intron 25.0%
! AAACTCATAATTGTAGCATT+AGG + tig0025415:12921-12940 Msa1422490:intron 25.0%
!!! TTGATTCTTTTTCACTGTAT+AGG + tig0025415:12972-12991 Msa1422490:intron 25.0%
! TAAAGTAGGAAATAACTGAA+AGG - tig0025415:13182-13201 None:intergenic 25.0%
!! AAGTCTGTTTTGTATAAAGT+AGG - tig0025415:13196-13215 None:intergenic 25.0%
!!! CTAAACCATTTGTTCTTTTT+TGG + tig0025415:13235-13254 Msa1422490:intron 25.0%
! AAATGCCAAAAAAGAACAAA+TGG - tig0025415:13243-13262 None:intergenic 25.0%
!!! ATTTGTTCTTTTTTGGCATT+TGG + tig0025415:13242-13261 Msa1422490:intron 25.0%
! ATTTGGTTAACTATAATGAC+AGG + tig0025415:13259-13278 Msa1422490:intron 25.0%
! TTTGGTTAACTATAATGACA+GGG + tig0025415:13260-13279 Msa1422490:intron 25.0%
! TTATGTTCAATATCCACTTA+TGG + tig0025415:13429-13448 Msa1422490:intron 25.0%
! AATTATTTATCACACGACAA+AGG + tig0025415:13793-13812 Msa1422490:intron 25.0%
! AGTTCTTCAAGAATGATAAA+GGG - tig0025415:14325-14344 None:intergenic 25.0%
! AAGTTCTTCAAGAATGATAA+AGG - tig0025415:14326-14345 None:intergenic 25.0%
! TTCTTGAAGAACTTAGTATA+CGG + tig0025415:14332-14351 Msa1422490:intron 25.0%
! AATGACTTTATTGTATGTTC+TGG - tig0025415:14547-14566 None:intergenic 25.0%
!! TCATTCATCTTTTACACAAA+GGG + tig0025415:14562-14581 Msa1422490:three_prime_UTR 25.0%
!!! ATGCATGATTTTGTTGTTTT+TGG - tig0025415:14650-14669 None:intergenic 25.0%
! TCTTAAACTTGATACACTAA+TGG + tig0025415:14914-14933 Msa1422490:three_prime_UTR 25.0%
!!! TGTAATTTTAGGATGGATTA+AGG - tig0025415:14968-14987 None:intergenic 25.0%
!!! TCTGTTATGTAATTTTAGGA+TGG - tig0025415:14975-14994 None:intergenic 25.0%
TTGAGAATTCAAGTAGTTGA+TGG - tig0025415:11867-11886 None:intergenic 30.0%
CAACTACTTGAATTCTCAAA+TGG + tig0025415:11868-11887 Msa1422490:CDS 30.0%
GCCTTTATATTGCTTTGTAT+AGG - tig0025415:11938-11957 None:intergenic 30.0%
CTATTGATACTCAACATGTT+GGG + tig0025415:12139-12158 Msa1422490:CDS 30.0%
TATTGATACTCAACATGTTG+GGG + tig0025415:12140-12159 Msa1422490:CDS 30.0%
!! TTTTTGTTTAAGACGGCTTA+TGG + tig0025415:12178-12197 Msa1422490:intron 30.0%
AATGAGCTGAAAACAACTTA+TGG - tig0025415:12222-12241 None:intergenic 30.0%
ATGGTAAGGTCATTTAGTAT+AGG - tig0025415:12445-12464 None:intergenic 30.0%
TATACTAAATGACCTTACCA+TGG + tig0025415:12444-12463 Msa1422490:CDS 30.0%
TGAATTAGCAATAACAAACG+TGG + tig0025415:12501-12520 Msa1422490:intron 30.0%
! TTTTACATTGTCATATACCG+CGG - tig0025415:12634-12653 None:intergenic 30.0%
GGTATATGACAATGTAAAAC+AGG + tig0025415:12635-12654 Msa1422490:CDS 30.0%
! AGGAAACAATTTCAAGTGAT+AGG + tig0025415:12862-12881 Msa1422490:intron 30.0%
CATAATCTACTCTTCAATCT+TGG - tig0025415:12896-12915 None:intergenic 30.0%
AGATTGAAGAGTAGATTATG+TGG + tig0025415:12896-12915 Msa1422490:intron 30.0%
GAAATAACTGAAAGGACAAA+AGG - tig0025415:13174-13193 None:intergenic 30.0%
TTAGTAGTAGCAGATTTAGT+CGG - tig0025415:13219-13238 None:intergenic 30.0%
GTGGATATTGAACATAAACA+AGG - tig0025415:13426-13445 None:intergenic 30.0%
AAGAGCTTCTTCAGTATATT+TGG - tig0025415:13590-13609 None:intergenic 30.0%
AGAATAAAATGTGTTCACCA+AGG - tig0025415:13923-13942 None:intergenic 30.0%
AATGAGAAGATAGTACACTT+TGG - tig0025415:14129-14148 None:intergenic 30.0%
TGTACTATCTTCTCATTATG+AGG + tig0025415:14132-14151 Msa1422490:intron 30.0%
! CTTCTTTTAATCATTCTGCT+TGG + tig0025415:14277-14296 Msa1422490:intron 30.0%
GTTCTTCAAGAATGATAAAG+GGG - tig0025415:14324-14343 None:intergenic 30.0%
! ATCATATGCTAATGCTACTT+TGG + tig0025415:14373-14392 Msa1422490:exon 30.0%
TATGATATTTGTCAACAAGC+TGG - tig0025415:14422-14441 None:intergenic 30.0%
GTTGACAAATATCATAGACA+AGG + tig0025415:14426-14445 Msa1422490:three_prime_UTR 30.0%
CAAATATCATAGACAAGGTT+TGG + tig0025415:14431-14450 Msa1422490:three_prime_UTR 30.0%
! GTCATTCATCTTTTACACAA+AGG + tig0025415:14561-14580 Msa1422490:three_prime_UTR 30.0%
AGCAATCAATTTAGCTAGTT+AGG + tig0025415:14589-14608 Msa1422490:three_prime_UTR 30.0%
TTAGTAATGTGTAAGTCTCT+TGG + tig0025415:14784-14803 Msa1422490:three_prime_UTR 30.0%
! TTATCTTCTTTTGGTCACAG+AGG + tig0025415:11802-11821 Msa1422490:five_prime_UTR 35.0%
!! AGTAGTTGATGGAATGAAAC+TGG - tig0025415:11856-11875 None:intergenic 35.0%
! TCAATTTTCAACACCCTTTG+TGG + tig0025415:12026-12045 Msa1422490:intron 35.0%
ATTACAACCTGTTCCACAAA+GGG - tig0025415:12042-12061 None:intergenic 35.0%
TATTACAACCTGTTCCACAA+AGG - tig0025415:12043-12062 None:intergenic 35.0%
GTGGAACAGGTTGTAATAAA+TGG + tig0025415:12045-12064 Msa1422490:intron 35.0%
TGTAATAAATGGAGCAGCAA+AGG + tig0025415:12056-12075 Msa1422490:CDS 35.0%
GCTATTGATACTCAACATGT+TGG + tig0025415:12138-12157 Msa1422490:CDS 35.0%
!! GGACAGGTTTTTGTTTAAGA+CGG + tig0025415:12171-12190 Msa1422490:intron 35.0%
! TTTAAGACGGCTTATGGAAA+TGG + tig0025415:12184-12203 Msa1422490:intron 35.0%
!! AGTTGTTTTCATAAGGCTAG+AGG - tig0025415:12308-12327 None:intergenic 35.0%
! AAATGACCTTACCATGGTTT+TGG + tig0025415:12450-12469 Msa1422490:CDS 35.0%
! AATGACCTTACCATGGTTTT+GGG + tig0025415:12451-12470 Msa1422490:CDS 35.0%
! TGTAAAACAGGTTTGAGTTC+TGG + tig0025415:12647-12666 Msa1422490:intron 35.0%
! ACCGTATCTAATTTGATTCG+CGG - tig0025415:13033-13052 None:intergenic 35.0%
ATTATCAGCATTCTGTGAGA+AGG + tig0025415:13059-13078 Msa1422490:CDS 35.0%
CTGCAACAATATTGATCCTA+TGG - tig0025415:13309-13328 None:intergenic 35.0%
ATTCCACAATTTCGACATTG+CGG - tig0025415:13361-13380 None:intergenic 35.0%
! TCTTACATTTGCATTAGCCT+TGG - tig0025415:13384-13403 None:intergenic 35.0%
GTTAAGCTAACTTAACTGAC+TGG + tig0025415:13491-13510 Msa1422490:intron 35.0%
! TGAAGAAGCTCTTGTTATAC+AGG + tig0025415:13597-13616 Msa1422490:intron 35.0%
TGTTATACAGGATCTTCCAT+CGG + tig0025415:13609-13628 Msa1422490:intron 35.0%
TAGAGAGATTGTTGGCAATT+TGG - tig0025415:13645-13664 None:intergenic 35.0%
AAGTGAACTGTTGTACTAGA+GGG - tig0025415:13878-13897 None:intergenic 35.0%
AAAGTGAACTGTTGTACTAG+AGG - tig0025415:13879-13898 None:intergenic 35.0%
!! AGTACAACAGTTCACTTTTC+TGG + tig0025415:13881-13900 Msa1422490:CDS 35.0%
ATCTGTGATATCATGCTTGA+TGG - tig0025415:14178-14197 None:intergenic 35.0%
TGTGTAAGAGAAAAATTCGG+AGG - tig0025415:14479-14498 None:intergenic 35.0%
! CGTGATTCGATGATTTTGTA+AGG + tig0025415:14512-14531 Msa1422490:three_prime_UTR 35.0%
ACCATCGTATAATTTGGGTA+GGG - tig0025415:14681-14700 None:intergenic 35.0%
CTGAGACCATCGTATAATTT+GGG - tig0025415:14686-14705 None:intergenic 35.0%
ACTGAGACCATCGTATAATT+TGG - tig0025415:14687-14706 None:intergenic 35.0%
TGGTCTTTAAACCTGTTGTA+GGG + tig0025415:14727-14746 Msa1422490:three_prime_UTR 35.0%
! GTTTAAACCGTTGTTACTTC+TGG + tig0025415:14812-14831 Msa1422490:three_prime_UTR 35.0%
TAGTCCAATGAGAAACTTGT+GGG - tig0025415:14847-14866 None:intergenic 35.0%
ATAGTCCAATGAGAAACTTG+TGG - tig0025415:14848-14867 None:intergenic 35.0%
AATGGAGCAGCAAAGGAAAT+AGG + tig0025415:12063-12082 Msa1422490:CDS 40.0%
AGCAGTATTAGCTGTGACAA+AGG + tig0025415:12092-12111 Msa1422490:CDS 40.0%
CAACATGTTGGGGAAGATAT+TGG + tig0025415:12150-12169 Msa1422490:CDS 40.0%
TTTCGATAAGCTTTCCACGA+TGG + tig0025415:12240-12259 Msa1422490:intron 40.0%
!! GTTGTTTTCATAAGCCATCG+TGG - tig0025415:12257-12276 None:intergenic 40.0%
!! TTTCCTATAGCTTTGTGGCA+TGG + tig0025415:12402-12421 Msa1422490:intron 40.0%
AGATATAGAGCCCAAAACCA+TGG - tig0025415:12464-12483 None:intergenic 40.0%
GAATTGCAATTTGCAGTCCA+AGG + tig0025415:12575-12594 Msa1422490:intron 40.0%
ACTGTATAGGCAACAGCATT+TGG + tig0025415:12985-13004 Msa1422490:intron 40.0%
GCCGCGAATCAAATTAGATA+CGG + tig0025415:13029-13048 Msa1422490:CDS 40.0%
! ACTATAATGACAGGGTGTCT+TGG + tig0025415:13268-13287 Msa1422490:intron 40.0%
! ATTGATCCTATGGAAAGCGT+TGG - tig0025415:13299-13318 None:intergenic 40.0%
AGGATCAATATTGTTGCAGC+AGG + tig0025415:13310-13329 Msa1422490:CDS 40.0%
CAATTTCGACATTGCGGTAA+TGG - tig0025415:13355-13374 None:intergenic 40.0%
TTACCGCAATGTCGAAATTG+TGG + tig0025415:13355-13374 Msa1422490:CDS 40.0%
TGTCGAAATTGTGGAATCCA+AGG + tig0025415:13364-13383 Msa1422490:CDS 40.0%
TCTTCATTCCCAAACGAAGA+CGG + tig0025415:13541-13560 Msa1422490:intron 40.0%
!! GTTGGCAATTTGGTTTGCTT+CGG - tig0025415:13635-13654 None:intergenic 40.0%
CTCTGTTATAGATTTGACCG+AGG - tig0025415:13669-13688 None:intergenic 40.0%
TTTATCACACGACAAAGGCA+AGG + tig0025415:13798-13817 Msa1422490:intron 40.0%
TTATCACACGACAAAGGCAA+GGG + tig0025415:13799-13818 Msa1422490:intron 40.0%
!!! TGCACAGTTTGGTTTTACCA+GGG + tig0025415:13849-13868 Msa1422490:CDS 40.0%
!! ACAGTTCACTTTTCTGGTCT+TGG + tig0025415:13887-13906 Msa1422490:CDS 40.0%
GATGTACAATGTCTTATGCC+AGG + tig0025415:14195-14214 Msa1422490:intron 40.0%
AAGCTTAGACTTGTACCTTG+AGG - tig0025415:14251-14270 None:intergenic 40.0%
GAAGAACTTAGTATACGGCT+TGG + tig0025415:14337-14356 Msa1422490:intron 40.0%
GTTAAATTCAAGCGACTCAC+TGG + tig0025415:14395-14414 Msa1422490:three_prime_UTR 40.0%
ACCCTACCCAAATTATACGA+TGG + tig0025415:14677-14696 Msa1422490:three_prime_UTR 40.0%
GACCATCGTATAATTTGGGT+AGG - tig0025415:14682-14701 None:intergenic 40.0%
AGTAGCATGTAAGTCTTTCG+CGG + tig0025415:14704-14723 Msa1422490:three_prime_UTR 40.0%
GTGGTCTTTAAACCTGTTGT+AGG + tig0025415:14726-14745 Msa1422490:three_prime_UTR 40.0%
GGTCTTTAAACCTGTTGTAG+GGG + tig0025415:14728-14747 Msa1422490:three_prime_UTR 40.0%
TCTAATTCAACCCCTACAAC+AGG - tig0025415:14741-14760 None:intergenic 40.0%
GTAATGTGTAAGTCTCTTGG+TGG + tig0025415:14787-14806 Msa1422490:three_prime_UTR 40.0%
AGTCCAATGAGAAACTTGTG+GGG - tig0025415:14846-14865 None:intergenic 40.0%
ACACACATATAGCCGAAGCT+GGG - tig0025415:11766-11785 None:intergenic 45.0%
GGAATGAAACTGGCAGCTTA+AGG - tig0025415:11846-11865 None:intergenic 45.0%
TTGTATAGGTTGTGCTGAGC+AGG - tig0025415:11924-11943 None:intergenic 45.0%
TTCAACACCCTTTGTGGAAC+AGG + tig0025415:12032-12051 Msa1422490:intron 45.0%
TGTTGGGGAAGATATTGGAC+AGG + tig0025415:12155-12174 Msa1422490:CDS 45.0%
CTTCCATGCCACAAAGCTAT+AGG - tig0025415:12408-12427 None:intergenic 45.0%
TAGAGCCCAAAACCATGGTA+AGG - tig0025415:12459-12478 None:intergenic 45.0%
!!! GGTTTTGGGCTCTATATCTC+AGG + tig0025415:12465-12484 Msa1422490:CDS 45.0%
CATTGTCATATACCGCGGAA+GGG - tig0025415:12629-12648 None:intergenic 45.0%
ACATTGTCATATACCGCGGA+AGG - tig0025415:12630-12649 None:intergenic 45.0%
ACCTTTCTCCGTCTTCGTTT+GGG - tig0025415:13552-13571 None:intergenic 45.0%
GCCAACAATCTCTCTAACCT+CGG + tig0025415:13649-13668 Msa1422490:CDS 45.0%
ACCGAGGTTAGAGAGATTGT+TGG - tig0025415:13653-13672 None:intergenic 45.0%
AGACTCCTCAACAGATGTCT+TGG + tig0025415:13690-13709 Msa1422490:CDS 45.0%
CCTTACCAAGACATCTGTTG+AGG - tig0025415:13698-13717 None:intergenic 45.0%
CCTCAACAGATGTCTTGGTA+AGG + tig0025415:13695-13714 Msa1422490:intron 45.0%
TATCACACGACAAAGGCAAG+GGG + tig0025415:13800-13819 Msa1422490:intron 45.0%
! AAAGGCAAGGGGTCAAGTTT+TGG + tig0025415:13811-13830 Msa1422490:intron 45.0%
! AAGGCAAGGGGTCAAGTTTT+GGG + tig0025415:13812-13831 Msa1422490:intron 45.0%
!!! GTGCACAGTTTGGTTTTACC+AGG + tig0025415:13848-13867 Msa1422490:CDS 45.0%
!!! TCACTTTTCTGGTCTTGGAG+AGG + tig0025415:13892-13911 Msa1422490:CDS 45.0%
CTAATGGCTATCAACAAGCC+TGG - tig0025415:14216-14235 None:intergenic 45.0%
!! GAGGCGCACTACTTTTCTAA+TGG - tig0025415:14232-14251 None:intergenic 45.0%
TAGAAAAGTAGTGCGCCTCA+AGG + tig0025415:14233-14252 Msa1422490:intron 45.0%
GGGATCACCAGAAGTAACAA+CGG - tig0025415:14822-14841 None:intergenic 45.0%
CAATGAGAAACTTGTGGGGT+GGG - tig0025415:14842-14861 None:intergenic 45.0%
GACACACATATAGCCGAAGC+TGG - tig0025415:11767-11786 None:intergenic 50.0%
TTAGCTGTGACAAAGGCCAG+AGG + tig0025415:12099-12118 Msa1422490:CDS 50.0%
TGTGACAAAGGCCAGAGGAA+TGG + tig0025415:12104-12123 Msa1422490:CDS 50.0%
TCCAGCAACTTCCATTCCTC+TGG - tig0025415:12118-12137 None:intergenic 50.0%
GAAATCGACTACAACCGCTG+TGG - tig0025415:12601-12620 None:intergenic 50.0%
ATTCTGTGAGAAGGCCAGCA+TGG + tig0025415:13068-13087 Msa1422490:CDS 50.0%
GTTGCTCCAACGCTTTCCAT+AGG + tig0025415:13290-13309 Msa1422490:CDS 50.0%
TCCCAAACGAAGACGGAGAA+AGG + tig0025415:13548-13567 Msa1422490:intron 50.0%
GACCTTTCTCCGTCTTCGTT+TGG - tig0025415:13553-13572 None:intergenic 50.0%
!! ATTTGGTTTGCTTCGGCCGA+TGG - tig0025415:13628-13647 None:intergenic 50.0%
!!! AGGGGTCAAGTTTTGGGAGA+TGG + tig0025415:13818-13837 Msa1422490:CDS 50.0%
TGGAATTCGCGTGCACAGTT+TGG + tig0025415:13838-13857 Msa1422490:CDS 50.0%
! GTCTTGGAGAGGTATGTCCT+TGG + tig0025415:13903-13922 Msa1422490:intron 50.0%
AGCATGTAAGTCTTTCGCGG+TGG + tig0025415:14707-14726 Msa1422490:three_prime_UTR 50.0%
CCAATGAGAAACTTGTGGGG+TGG - tig0025415:14843-14862 None:intergenic 50.0%
CCACCCCACAAGTTTCTCAT+TGG + tig0025415:14840-14859 Msa1422490:three_prime_UTR 50.0%
CACAGAGGCTTGAGCAGCAA+TGG + tig0025415:11817-11836 Msa1422490:exon 55.0%
GCCAGAGGAATGGAAGTTGC+TGG + tig0025415:12114-12133 Msa1422490:CDS 55.0%
TTTGCAGTCCAAGGCCACAG+CGG + tig0025415:12584-12603 Msa1422490:intron 55.0%
CGATTTCACAGACCCTTCCG+CGG + tig0025415:12614-12633 Msa1422490:CDS 55.0%
AAGGCCAGCATGGTGAGCAA+GGG + tig0025415:13078-13097 Msa1422490:intron 55.0%
GTTGTACTAGAGGGAAGCCC+TGG - tig0025415:13869-13888 None:intergenic 55.0%
GACTACAACCGCTGTGGCCT+TGG - tig0025415:12595-12614 None:intergenic 60.0%
GAAGGCCAGCATGGTGAGCA+AGG + tig0025415:13077-13096 Msa1422490:intron 60.0%
AGGCCAGCATGGTGAGCAAG+GGG + tig0025415:13079-13098 Msa1422490:intron 60.0%
TCACCCCTTGCTCACCATGC+TGG - tig0025415:13085-13104 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0025415 gene 11753 15020 11753 ID=Msa1422490;Name=Msa1422490
tig0025415 mRNA 11753 15020 11753 ID=Msa1422490-mRNA-1;Parent=Msa1422490;Name=Msa1422490-mRNA-1;_AED=0.12;_eAED=0.12;_QI=83|0.87|1|1|0.87|0.88|9|647|273
tig0025415 exon 11753 11955 11753 ID=Msa1422490-mRNA-1:exon:2630;Parent=Msa1422490-mRNA-1
tig0025415 exon 12054 12176 12054 ID=Msa1422490-mRNA-1:exon:2631;Parent=Msa1422490-mRNA-1
tig0025415 exon 12412 12486 12412 ID=Msa1422490-mRNA-1:exon:2632;Parent=Msa1422490-mRNA-1
tig0025415 exon 12591 12656 12591 ID=Msa1422490-mRNA-1:exon:2633;Parent=Msa1422490-mRNA-1
tig0025415 exon 12994 13089 12994 ID=Msa1422490-mRNA-1:exon:2634;Parent=Msa1422490-mRNA-1
tig0025415 exon 13281 13397 13281 ID=Msa1422490-mRNA-1:exon:2635;Parent=Msa1422490-mRNA-1
tig0025415 exon 13619 13711 13619 ID=Msa1422490-mRNA-1:exon:2636;Parent=Msa1422490-mRNA-1
tig0025415 exon 13815 13913 13815 ID=Msa1422490-mRNA-1:exon:2637;Parent=Msa1422490-mRNA-1
tig0025415 exon 14341 15020 14341 ID=Msa1422490-mRNA-1:exon:2638;Parent=Msa1422490-mRNA-1
tig0025415 five_prime_UTR 11753 11835 11753 ID=Msa1422490-mRNA-1:five_prime_utr;Parent=Msa1422490-mRNA-1
tig0025415 CDS 11836 11955 11836 ID=Msa1422490-mRNA-1:cds;Parent=Msa1422490-mRNA-1
tig0025415 CDS 12054 12176 12054 ID=Msa1422490-mRNA-1:cds;Parent=Msa1422490-mRNA-1
tig0025415 CDS 12412 12486 12412 ID=Msa1422490-mRNA-1:cds;Parent=Msa1422490-mRNA-1
tig0025415 CDS 12591 12656 12591 ID=Msa1422490-mRNA-1:cds;Parent=Msa1422490-mRNA-1
tig0025415 CDS 12994 13089 12994 ID=Msa1422490-mRNA-1:cds;Parent=Msa1422490-mRNA-1
tig0025415 CDS 13281 13397 13281 ID=Msa1422490-mRNA-1:cds;Parent=Msa1422490-mRNA-1
tig0025415 CDS 13619 13711 13619 ID=Msa1422490-mRNA-1:cds;Parent=Msa1422490-mRNA-1
tig0025415 CDS 13815 13913 13815 ID=Msa1422490-mRNA-1:cds;Parent=Msa1422490-mRNA-1
tig0025415 CDS 14341 14373 14341 ID=Msa1422490-mRNA-1:cds;Parent=Msa1422490-mRNA-1
tig0025415 three_prime_UTR 14374 15020 14374 ID=Msa1422490-mRNA-1:three_prime_utr;Parent=Msa1422490-mRNA-1
Gene Sequence

>Msa1422490

ATGGCAGCCTTAAGCTGCCAGTTTCATTCCATCAACTACTTGAATTCTCAAATGGTCAAAAGCAGAAGCAAGCATTCTATAATTTCCTGCTCAGCACAACCTATACAAAGCAATATAAAGGTTGTAATAAATGGAGCAGCAAAGGAAATAGGAAGAGCAGCAGTATTAGCTGTGACAAAGGCCAGAGGAATGGAAGTTGCTGGAGCTATTGATACTCAACATGTTGGGGAAGATATTGGACAGCTTTGTGGCATGGAAGATCCTCTTGAAATACCTATACTAAATGACCTTACCATGGTTTTGGGCTCTATATCTCAGTCCAAGGCCACAGCGGTTGTAGTCGATTTCACAGACCCTTCCGCGGTATATGACAATGTAAAACAGGCAACAGCATTTGGCATGAAAAGTGTTGTTTACGTGCCGCGAATCAAATTAGATACGGTTGCAGCATTATCAGCATTCTGTGAGAAGGCCAGCATGGGTGTCTTGGTTGCTCCAACGCTTTCCATAGGATCAATATTGTTGCAGCAGGCTGCAATTTCAGCTTCTTTCCATTACCGCAATGTCGAAATTGTGGAATCCAAGGCTAATGCAAATGATCTTCCATCGGCCGAAGCAAACCAAATTGCCAACAATCTCTCTAACCTCGGTCAAATCTATAACAGAGAAGACTCCTCAACAGATGTCTTGGCAAGGGGTCAAGTTTTGGGAGATGGAATTCGCGTGCACAGTTTGGTTTTACCAGGGCTTCCCTCTAGTACAACAGTTCACTTTTCTGGTCTTGGAGAGAACTTAGTATACGGCTTGGAGAAGTTTTTGTGA

Protein sequence

>Msa1422490

MAALSCQFHSINYLNSQMVKSRSKHSIISCSAQPIQSNIKVVINGAAKEIGRAAVLAVTKARGMEVAGAIDTQHVGEDIGQLCGMEDPLEIPILNDLTMVLGSISQSKATAVVVDFTDPSAVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAISASFHYRNVEIVESKANANDLPSAEANQIANNLSNLGQIYNREDSSTDVLARGQVLGDGIRVHSLVLPGLPSSTTVHFSGLGENLVYGLEKFL*