Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182270 | XP_013470128.1 | 94.477 | 344 | 19 | 0 | 1 | 344 | 1 | 344 | 0.0 | 673 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182270 | sp|Q9C9F4|COLX_ARATH | 38.535 | 314 | 135 | 8 | 1 | 311 | 10 | 268 | 4.28e-64 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182270 | G8A287 | 94.477 | 344 | 19 | 0 | 1 | 344 | 1 | 344 | 0.0 | 673 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0182270 | 0.804963 | 1.678102e-49 | -8.615850e-47 |
| Msa0030310 | Msa0182270 | 0.805049 | 1.609952e-49 | -8.615850e-47 |
| Msa0040520 | Msa0182270 | -0.806293 | 8.827005e-50 | -8.615850e-47 |
| Msa0043160 | Msa0182270 | 0.893386 | 6.598645e-75 | -8.615850e-47 |
| Msa0043680 | Msa0182270 | 0.833338 | 5.646846e-56 | -8.615850e-47 |
| Msa0078520 | Msa0182270 | 0.801058 | 1.076814e-48 | -8.615850e-47 |
| Msa0082820 | Msa0182270 | 0.811450 | 6.959582e-51 | -8.615850e-47 |
| Msa0092660 | Msa0182270 | 0.826337 | 2.866756e-54 | -8.615850e-47 |
| Msa0092680 | Msa0182270 | 0.806651 | 7.416006e-50 | -8.615850e-47 |
| Msa0092730 | Msa0182270 | 0.830742 | 2.474219e-55 | -8.615850e-47 |
| Msa0092920 | Msa0182270 | 0.819634 | 1.047589e-52 | -8.615850e-47 |
| Msa0126300 | Msa0182270 | 0.801025 | 1.093584e-48 | -8.615850e-47 |
| Msa0135980 | Msa0182270 | 0.803059 | 4.176876e-49 | -8.615850e-47 |
| Msa0137030 | Msa0182270 | 0.938945 | 2.898497e-99 | -8.615850e-47 |
| Msa0137600 | Msa0182270 | 0.834474 | 2.936047e-56 | -8.615850e-47 |
| Msa0157020 | Msa0182270 | 0.803020 | 4.254604e-49 | -8.615850e-47 |
| Msa0157350 | Msa0182270 | 0.814935 | 1.195868e-51 | -8.615850e-47 |
| Msa0179800 | Msa0182270 | -0.807183 | 5.724596e-50 | -8.615850e-47 |
| Msa0182270 | Msa0194970 | 0.805680 | 1.187484e-49 | -8.615850e-47 |
| Msa0182270 | Msa0223280 | 0.809506 | 1.829458e-50 | -8.615850e-47 |
| Msa0182270 | Msa0247310 | 0.814288 | 1.662829e-51 | -8.615850e-47 |
| Msa0182270 | Msa0259980 | 0.807358 | 5.256010e-50 | -8.615850e-47 |
| Msa0182270 | Msa0280140 | 0.819161 | 1.343196e-52 | -8.615850e-47 |
| Msa0182270 | Msa0308430 | 0.808736 | 2.674649e-50 | -8.615850e-47 |
| Msa0182270 | Msa0339860 | 0.807231 | 5.593124e-50 | -8.615850e-47 |
| Msa0182270 | Msa0379110 | 0.807761 | 4.315560e-50 | -8.615850e-47 |
| Msa0182270 | Msa0379390 | 0.823220 | 1.557701e-53 | -8.615850e-47 |
| Msa0182270 | Msa0379450 | 0.801677 | 8.043001e-49 | -8.615850e-47 |
| Msa0182270 | Msa0415930 | 0.808638 | 2.806761e-50 | -8.615850e-47 |
| Msa0182270 | Msa0417630 | 0.834856 | 2.352598e-56 | -8.615850e-47 |
| Msa0182270 | Msa0480150 | 0.818336 | 2.066722e-52 | -8.615850e-47 |
| Msa0182270 | Msa0532840 | 0.812352 | 4.426112e-51 | -8.615850e-47 |
| Msa0182270 | Msa0533010 | 0.807196 | 5.687469e-50 | -8.615850e-47 |
| Msa0182270 | Msa0537270 | 0.803781 | 2.959541e-49 | -8.615850e-47 |
| Msa0182270 | Msa0567290 | 0.802044 | 6.761235e-49 | -8.615850e-47 |
| Msa0182270 | Msa0593710 | 0.807527 | 4.839387e-50 | -8.615850e-47 |
| Msa0182270 | Msa0607480 | 0.822607 | 2.163962e-53 | -8.615850e-47 |
| Msa0182270 | Msa0620130 | 0.821187 | 4.613857e-53 | -8.615850e-47 |
| Msa0182270 | Msa0633750 | 0.833876 | 4.145906e-56 | -8.615850e-47 |
| Msa0182270 | Msa0642650 | 0.814409 | 1.563292e-51 | -8.615850e-47 |
| Msa0182270 | Msa0647750 | 0.802402 | 5.706903e-49 | -8.615850e-47 |
| Msa0182270 | Msa0659920 | 0.865529 | 5.526894e-65 | -8.615850e-47 |
| Msa0182270 | Msa0671610 | -0.818188 | 2.232571e-52 | -8.615850e-47 |
| Msa0182270 | Msa0681890 | 0.813493 | 2.489759e-51 | -8.615850e-47 |
| Msa0182270 | Msa0686240 | 0.829312 | 5.524693e-55 | -8.615850e-47 |
| Msa0182270 | Msa0703720 | 0.804689 | 1.914901e-49 | -8.615850e-47 |
| Msa0182270 | Msa0703760 | 0.830358 | 3.071283e-55 | -8.615850e-47 |
| Msa0182270 | Msa0706580 | 0.871945 | 4.639163e-67 | -8.615850e-47 |
| Msa0182270 | Msa0709480 | 0.809183 | 2.145816e-50 | -8.615850e-47 |
| Msa0182270 | Msa0717090 | 0.809621 | 1.728083e-50 | -8.615850e-47 |
| Msa0182270 | Msa0790180 | 0.801408 | 9.131881e-49 | -8.615850e-47 |
| Msa0182270 | Msa0790830 | 0.800145 | 1.653129e-48 | -8.615850e-47 |
| Msa0182270 | Msa0804110 | 0.810729 | 9.974117e-51 | -8.615850e-47 |
| Msa0182270 | Msa0900320 | 0.805885 | 1.075604e-49 | -8.615850e-47 |
| Msa0182270 | Msa0925160 | 0.819882 | 9.194416e-53 | -8.615850e-47 |
| Msa0182270 | Msa0955260 | 0.819778 | 9.712272e-53 | -8.615850e-47 |
| Msa0182270 | Msa0965960 | 0.811507 | 6.763968e-51 | -8.615850e-47 |
| Msa0182270 | Msa0972730 | 0.816262 | 6.055194e-52 | -8.615850e-47 |
| Msa0182270 | Msa0990520 | 0.803771 | 2.973115e-49 | -8.615850e-47 |
| Msa0182270 | Msa1027790 | 0.812474 | 4.162830e-51 | -8.615850e-47 |
| Msa0182270 | Msa1040770 | 0.804719 | 1.887248e-49 | -8.615850e-47 |
| Msa0182270 | Msa1045440 | 0.821157 | 4.686734e-53 | -8.615850e-47 |
| Msa0182270 | Msa1067430 | 0.817527 | 3.149335e-52 | -8.615850e-47 |
| Msa0182270 | Msa1072080 | 0.834722 | 2.542332e-56 | -8.615850e-47 |
| Msa0182270 | Msa1106580 | 0.828595 | 8.238413e-55 | -8.615850e-47 |
| Msa0182270 | Msa1112610 | 0.807430 | 5.074156e-50 | -8.615850e-47 |
| Msa0182270 | Msa1149960 | 0.807349 | 5.279512e-50 | -8.615850e-47 |
| Msa0182270 | Msa1159100 | 0.820051 | 8.411533e-53 | -8.615850e-47 |
| Msa0182270 | Msa1166180 | 0.804117 | 2.519806e-49 | -8.615850e-47 |
| Msa0182270 | Msa1171340 | 0.805856 | 1.090830e-49 | -8.615850e-47 |
| Msa0182270 | Msa1175750 | 0.806825 | 6.816455e-50 | -8.615850e-47 |
| Msa0182270 | Msa1183610 | 0.814041 | 1.885013e-51 | -8.615850e-47 |
| Msa0182270 | Msa1183760 | 0.833076 | 6.564772e-56 | -8.615850e-47 |
| Msa0182270 | Msa1219250 | 0.800260 | 1.566725e-48 | -8.615850e-47 |
| Msa0182270 | Msa1250670 | 0.801653 | 8.134749e-49 | -8.615850e-47 |
| Msa0182270 | Msa1271510 | 0.814472 | 1.514173e-51 | -8.615850e-47 |
| Msa0182270 | Msa1271600 | 0.806204 | 9.213689e-50 | -8.615850e-47 |
| Msa0182270 | Msa1307370 | 0.805301 | 1.426440e-49 | -8.615850e-47 |
| Msa0182270 | Msa1361840 | 0.937485 | 3.208051e-98 | -8.615850e-47 |
| Msa0182270 | Msa1365870 | 0.814953 | 1.184726e-51 | -8.615850e-47 |
| Msa0182270 | Msa1376640 | 0.802970 | 4.356533e-49 | -8.615850e-47 |
| Msa0182270 | Msa1398840 | 0.805489 | 1.302459e-49 | -8.615850e-47 |
| Msa0182270 | Msa1415250 | 0.813593 | 2.366353e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182270 | MtrunA17_Chr1g0209071 | 94.477 | 344 | 19 | 0 | 1 | 344 | 1 | 344 | 0.0 | 673 |
| Msa0182270 | MtrunA17_Chr5g0429341 | 47.541 | 122 | 60 | 2 | 1 | 119 | 1 | 121 | 2.97e-31 | 122 |
| Msa0182270 | MtrunA17_Chr3g0120711 | 44.860 | 107 | 57 | 1 | 1 | 105 | 1 | 107 | 3.92e-25 | 105 |
| Msa0182270 | MtrunA17_Chr2g0322941 | 46.154 | 104 | 55 | 1 | 1 | 103 | 40 | 143 | 6.35e-24 | 98.6 |
| Msa0182270 | MtrunA17_Chr7g0268691 | 38.679 | 106 | 63 | 1 | 3 | 106 | 18 | 123 | 1.65e-20 | 91.3 |
| Msa0182270 | MtrunA17_Chr7g0251781 | 33.333 | 117 | 69 | 1 | 1 | 108 | 1 | 117 | 2.36e-17 | 82.4 |
| Msa0182270 | MtrunA17_Chr1g0150471 | 34.146 | 82 | 54 | 0 | 3 | 84 | 4 | 85 | 3.18e-13 | 69.7 |
| Msa0182270 | MtrunA17_Chr3g0136701 | 34.783 | 92 | 57 | 1 | 3 | 91 | 4 | 95 | 3.96e-12 | 65.9 |
| Msa0182270 | MtrunA17_Chr7g0220721 | 37.838 | 74 | 46 | 0 | 3 | 76 | 24 | 97 | 2.23e-11 | 64.7 |
| Msa0182270 | MtrunA17_Chr4g0072871 | 34.146 | 82 | 54 | 0 | 3 | 84 | 20 | 101 | 4.15e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182270 | AT1G68190.1 | 38.535 | 314 | 135 | 8 | 1 | 311 | 10 | 268 | 4.35e-65 | 210 |
| Msa0182270 | AT1G68190.3 | 38.535 | 314 | 135 | 8 | 1 | 311 | 10 | 268 | 4.35e-65 | 210 |
| Msa0182270 | AT1G68190.2 | 38.535 | 314 | 135 | 8 | 1 | 311 | 39 | 297 | 1.27e-64 | 209 |
| Msa0182270 | AT5G48250.1 | 45.455 | 110 | 55 | 1 | 1 | 105 | 1 | 110 | 1.36e-27 | 111 |
| Msa0182270 | AT3G07650.3 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 9.49e-25 | 103 |
| Msa0182270 | AT3G07650.2 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 9.49e-25 | 103 |
| Msa0182270 | AT3G07650.4 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 9.49e-25 | 103 |
| Msa0182270 | AT3G07650.1 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 9.49e-25 | 103 |
| Msa0182270 | AT2G33500.1 | 39.252 | 107 | 62 | 1 | 5 | 108 | 12 | 118 | 1.53e-22 | 97.8 |
| Msa0182270 | AT2G33500.2 | 39.252 | 107 | 62 | 1 | 5 | 108 | 12 | 118 | 1.56e-22 | 97.8 |
| Msa0182270 | AT1G28050.1 | 38.889 | 108 | 63 | 1 | 5 | 109 | 9 | 116 | 6.43e-22 | 96.3 |
| Msa0182270 | AT3G21880.1 | 42.308 | 104 | 59 | 1 | 1 | 103 | 1 | 104 | 2.18e-21 | 94.4 |
| Msa0182270 | AT3G21880.3 | 42.308 | 104 | 59 | 1 | 1 | 103 | 5 | 108 | 2.19e-21 | 94.4 |
| Msa0182270 | AT3G21880.2 | 42.308 | 104 | 59 | 1 | 1 | 103 | 5 | 108 | 2.19e-21 | 94.4 |
| Msa0182270 | AT2G47890.3 | 38.679 | 106 | 64 | 1 | 2 | 106 | 10 | 115 | 1.99e-20 | 90.5 |
| Msa0182270 | AT2G47890.1 | 38.679 | 106 | 64 | 1 | 2 | 106 | 10 | 115 | 2.71e-20 | 90.5 |
| Msa0182270 | AT2G47890.2 | 38.679 | 106 | 64 | 1 | 2 | 106 | 10 | 115 | 3.51e-20 | 88.6 |
| Msa0182270 | AT4G15250.1 | 37.500 | 104 | 64 | 1 | 1 | 103 | 1 | 104 | 1.34e-19 | 88.6 |
| Msa0182270 | AT5G24930.1 | 40.244 | 82 | 49 | 0 | 3 | 84 | 4 | 85 | 1.70e-14 | 74.3 |
| Msa0182270 | AT3G02380.1 | 39.024 | 82 | 50 | 0 | 3 | 84 | 14 | 95 | 2.18e-13 | 70.9 |
| Msa0182270 | AT5G15840.1 | 37.000 | 100 | 62 | 1 | 3 | 102 | 18 | 116 | 4.69e-13 | 70.1 |
| Msa0182270 | AT5G15850.1 | 41.463 | 82 | 48 | 0 | 3 | 84 | 10 | 91 | 6.50e-13 | 69.3 |
| Msa0182270 | AT5G15840.2 | 37.000 | 100 | 62 | 1 | 3 | 102 | 18 | 116 | 7.34e-13 | 68.6 |
| Msa0182270 | AT2G24790.1 | 35.366 | 82 | 53 | 0 | 3 | 84 | 6 | 87 | 1.18e-12 | 68.2 |
| Msa0182270 | AT2G24790.2 | 35.366 | 82 | 53 | 0 | 3 | 84 | 6 | 87 | 1.88e-12 | 66.2 |
Find 84 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCATGGAGAGTTATTT+TGG | 0.172335 | 1_4:-70685202 | Msa0182270:CDS |
| CCACCAAACATCACTCTAAT+TGG | 0.186429 | 1_4:+70684391 | None:intergenic |
| CAAAACTATGAGGAACTATT+TGG | 0.211793 | 1_4:-70684427 | Msa0182270:CDS |
| AGCAGATTGTTGATTTAAAA+AGG | 0.229527 | 1_4:-70685433 | Msa0182270:CDS |
| CAAATAGTTCCTCATAGTTT+TGG | 0.233633 | 1_4:+70684428 | None:intergenic |
| GATCATTCTACAAAGATAAC+TGG | 0.292316 | 1_4:-70685389 | Msa0182270:CDS |
| TTCTTTACTTTCTCTTGGAT+TGG | 0.300222 | 1_4:-70687415 | Msa0182270:five_prime_UTR |
| CCATAGTGTTGCAAACTCTT+TGG | 0.316623 | 1_4:+70686211 | None:intergenic |
| CGATCTGTCAAATCTTTCAT+TGG | 0.318044 | 1_4:-70686245 | Msa0182270:CDS |
| CCAAAGAGTTTGCAACACTA+TGG | 0.332185 | 1_4:-70686211 | Msa0182270:CDS |
| AAATTACATTTGAATGCTTT+CGG | 0.333038 | 1_4:+70683957 | None:intergenic |
| ATTTCCATGACCAACAATAA+TGG | 0.336940 | 1_4:+70683986 | None:intergenic |
| ATCACTTCTTTACTTTCTCT+TGG | 0.349382 | 1_4:-70687420 | Msa0182270:five_prime_UTR |
| AGACGTCTCTTATTCTTCAT+TGG | 0.353797 | 1_4:-70684365 | Msa0182270:CDS |
| ATGTTTATCTTGTTTGTAAA+GGG | 0.368146 | 1_4:+70687441 | None:intergenic |
| TTCTTGTTGTCCATTATTGT+TGG | 0.381018 | 1_4:-70683996 | Msa0182270:three_prime_UTR |
| AATTGTCGGGCCGGCACCTC+CGG | 0.395024 | 1_4:-70686388 | Msa0182270:CDS |
| AATTAGACCTCCATTGTACT+TGG | 0.396036 | 1_4:+70684304 | None:intergenic |
| TTTGTCTTCATCTTCAGTTA+TGG | 0.410820 | 1_4:-70685231 | Msa0182270:CDS |
| TTGTAGATGCCATTTGCATC+AGG | 0.416030 | 1_4:+70686576 | None:intergenic |
| AAGTCTACAACTAAAGGAAA+TGG | 0.417116 | 1_4:-70686516 | Msa0182270:exon |
| AAATGTAATTTGAATTAGAA+AGG | 0.419682 | 1_4:-70683945 | Msa0182270:three_prime_UTR |
| CCAATGGACCTTTGCATCAC+AGG | 0.442091 | 1_4:+70686418 | None:intergenic |
| TGGAATGTTAAGTCAACGTC+AGG | 0.452059 | 1_4:+70684448 | None:intergenic |
| GATCCAATTAGAGTGATGTT+TGG | 0.455146 | 1_4:-70684394 | Msa0182270:CDS |
| GTCTGGTGACAATCATGATA+AGG | 0.459630 | 1_4:-70686063 | Msa0182270:CDS |
| TCAGTCACTTCAACGACGTC+TGG | 0.463294 | 1_4:-70686080 | Msa0182270:CDS |
| CTCTTATTCTTCATTGGAGA+AGG | 0.464404 | 1_4:-70684359 | Msa0182270:CDS |
| CCATTGGGCAAATGAATTGT+CGG | 0.464867 | 1_4:-70686402 | Msa0182270:CDS |
| GAAGAATAAACATTATGTTC+AGG | 0.471002 | 1_4:-70684138 | Msa0182270:three_prime_UTR |
| GATGTTTATCTTGTTTGTAA+AGG | 0.472684 | 1_4:+70687440 | None:intergenic |
| TGTTTGAAGTCTACAACTAA+AGG | 0.472949 | 1_4:-70686522 | Msa0182270:five_prime_UTR |
| ACACAAGGGTCCGGAGGTGC+CGG | 0.477240 | 1_4:+70686378 | None:intergenic |
| TTGTCCATTATTGTTGGTCA+TGG | 0.480987 | 1_4:-70683990 | Msa0182270:three_prime_UTR |
| CATTGGGCAAATGAATTGTC+GGG | 0.481757 | 1_4:-70686401 | Msa0182270:CDS |
| TACCTGACCTAGTTGACTGC+TGG | 0.483505 | 1_4:+70686037 | None:intergenic |
| CAAAGAGTTTGCAACACTAT+GGG | 0.487640 | 1_4:-70686210 | Msa0182270:CDS |
| TCTGGTGACAATCATGATAA+GGG | 0.492151 | 1_4:-70686062 | Msa0182270:CDS |
| CTGTGATGCAAAGGTCCATT+GGG | 0.492787 | 1_4:-70686417 | Msa0182270:CDS |
| CTTAACATTCCAAAACTATG+AGG | 0.496040 | 1_4:-70684437 | Msa0182270:CDS |
| ATCCAGCAGTCAACTAGGTC+AGG | 0.498273 | 1_4:-70686039 | Msa0182270:intron |
| GAGATTTCTCCTGATGCAAA+TGG | 0.501748 | 1_4:-70686585 | Msa0182270:five_prime_UTR |
| GTTATGGACCTTCCCTTGCA+TGG | 0.501977 | 1_4:-70685215 | Msa0182270:CDS |
| CTTACAACTTCTATCAAAAG+AGG | 0.502880 | 1_4:-70684073 | Msa0182270:three_prime_UTR |
| TGATAATTAAAGTGCTTGAT+CGG | 0.503663 | 1_4:-70684253 | Msa0182270:three_prime_UTR |
| CCTGTGATGCAAAGGTCCAT+TGG | 0.506685 | 1_4:-70686418 | Msa0182270:CDS |
| TGGGAGAAGACAATTCTATC+GGG | 0.510510 | 1_4:-70685301 | Msa0182270:CDS |
| CTGGGAGAAGACAATTCTAT+CGG | 0.513285 | 1_4:-70685302 | Msa0182270:CDS |
| TGCGATCAAAAGCTACATGA+TGG | 0.526346 | 1_4:-70686287 | Msa0182270:CDS |
| CCAAAATAACTCTCCATGCA+AGG | 0.527678 | 1_4:+70685202 | None:intergenic |
| ACTATGGGGATTTGAATTCA+AGG | 0.530398 | 1_4:-70686195 | Msa0182270:CDS |
| CCAATTAGAGTGATGTTTGG+TGG | 0.535280 | 1_4:-70684391 | Msa0182270:CDS |
| TCTTGCGTATGTTCAGTGCT+TGG | 0.538169 | 1_4:-70686336 | Msa0182270:CDS |
| ACGAGTTACACACAAGGGTC+CGG | 0.543558 | 1_4:+70686369 | None:intergenic |
| CAAGTTCTTCACATATTCCC+AGG | 0.546412 | 1_4:+70684494 | None:intergenic |
| TGAAAACAGTGTCGATCAGA+AGG | 0.550060 | 1_4:-70686168 | Msa0182270:CDS |
| GTTTCAGCTAATAGAAGAGA+GGG | 0.550624 | 1_4:-70685411 | Msa0182270:CDS |
| AACTATGAGGAACTATTTGG+AGG | 0.557150 | 1_4:-70684424 | Msa0182270:CDS |
| GTTGCAAACTCTTTGGCAGA+AGG | 0.563765 | 1_4:+70686218 | None:intergenic |
| CCGACAATTCATTTGCCCAA+TGG | 0.567553 | 1_4:+70686402 | None:intergenic |
| AAGGGATCCAGCAGTCAACT+AGG | 0.570420 | 1_4:-70686044 | Msa0182270:CDS |
| GGGCAAATGAATTGTCGGGC+CGG | 0.570532 | 1_4:-70686397 | Msa0182270:CDS |
| GCAGCAAAATATTCAAGACC+TGG | 0.572888 | 1_4:-70684512 | Msa0182270:CDS |
| TTGTCTATCCTGTGATGCAA+AGG | 0.577128 | 1_4:-70686426 | Msa0182270:CDS |
| CAAAATAACTCTCCATGCAA+GGG | 0.584415 | 1_4:+70685203 | None:intergenic |
| AAAGATAACTGGGCTACAAG+TGG | 0.592394 | 1_4:-70685378 | Msa0182270:CDS |
| CTGATTCTTATGATCGAAAG+CGG | 0.599433 | 1_4:-70684209 | Msa0182270:three_prime_UTR |
| ATAACTCTCCATGCAAGGGA+AGG | 0.600276 | 1_4:+70685207 | None:intergenic |
| CAGCAAAATATTCAAGACCT+GGG | 0.612414 | 1_4:-70684511 | Msa0182270:CDS |
| ATCATTCTACAAAGATAACT+GGG | 0.615835 | 1_4:-70685388 | Msa0182270:CDS |
| GCGATCAAAAGCTACATGAT+GGG | 0.617031 | 1_4:-70686286 | Msa0182270:CDS |
| GGTTTCAGCTAATAGAAGAG+AGG | 0.617889 | 1_4:-70685412 | Msa0182270:CDS |
| AAAGAGTTTGCAACACTATG+GGG | 0.619686 | 1_4:-70686209 | Msa0182270:CDS |
| TTAATTATCAATTCACTGAG+AGG | 0.633365 | 1_4:+70684266 | None:intergenic |
| TATTGACAATCCAAGTACAA+TGG | 0.635806 | 1_4:-70684314 | Msa0182270:CDS |
| TCAGCATTACAGTAAACAAG+TGG | 0.650082 | 1_4:+70686461 | None:intergenic |
| TTGACAGATCGTTTGCGATG+TGG | 0.663808 | 1_4:+70686257 | None:intergenic |
| TGACAATCCAAGTACAATGG+AGG | 0.672160 | 1_4:-70684311 | Msa0182270:CDS |
| AGTTACACACAAGGGTCCGG+AGG | 0.682408 | 1_4:+70686372 | None:intergenic |
| AAGTTCACTACAAAGTAACC+AGG | 0.683289 | 1_4:-70685171 | Msa0182270:intron |
| GGGAGAAGACAATTCTATCG+GGG | 0.687222 | 1_4:-70685300 | Msa0182270:CDS |
| AACAGCACGAGTTACACACA+AGG | 0.692236 | 1_4:+70686363 | None:intergenic |
| TTGCATCACAGGATAGACAA+AGG | 0.703130 | 1_4:+70686429 | None:intergenic |
| ACAGCACGAGTTACACACAA+GGG | 0.726480 | 1_4:+70686364 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTTTATTCTTGATT+AGG | + | chr1_4:70686434-70686453 | None:intergenic | 10.0% |
| !!! | TTAAAAAGTTTTGTAAACAA+TGG | - | chr1_4:70684504-70684523 | Msa0182270:CDS | 15.0% |
| !!! | TAAAAAGTTTTGTAAACAAT+GGG | - | chr1_4:70684505-70684524 | Msa0182270:CDS | 15.0% |
| !! | AAATCTAAATATATTTCCAA+GGG | + | chr1_4:70686266-70686285 | None:intergenic | 15.0% |
| !! | AAAATCTAAATATATTTCCA+AGG | + | chr1_4:70686267-70686286 | None:intergenic | 15.0% |
| !!! | TTGGAAATATATTTAGATTT+TGG | - | chr1_4:70686266-70686285 | Msa0182270:CDS | 15.0% |
| !! | ATATTAAAATATACCCTATA+TGG | - | chr1_4:70686347-70686366 | Msa0182270:CDS | 15.0% |
| !! | TATTAAAATATACCCTATAT+GGG | - | chr1_4:70686348-70686367 | Msa0182270:CDS | 15.0% |
| !! | ATAAAAATAAATTCATACTC+TGG | - | chr1_4:70686442-70686461 | Msa0182270:CDS | 15.0% |
| !! | AAATGTAATTTGAATTAGAA+AGG | - | chr1_4:70687399-70687418 | Msa0182270:five_prime_UTR | 15.0% |
| !!! | ATGTTTATCTTGTTTGTAAA+GGG | + | chr1_4:70683906-70683925 | None:intergenic | 20.0% |
| !!! | GATTTTTAGTATACAATCAT+AGG | - | chr1_4:70683990-70684009 | Msa0182270:three_prime_UTR | 20.0% |
| !!! | TTGAATCACTTTTTCTTTTA+TGG | - | chr1_4:70684575-70684594 | Msa0182270:intron | 20.0% |
| !!! | TGTGGTTTTGATAATTAATA+TGG | + | chr1_4:70685789-70685808 | None:intergenic | 20.0% |
| !!! | GTGTTTTTAAGATTATTAGT+TGG | + | chr1_4:70686310-70686329 | None:intergenic | 20.0% |
| !! | ATAAGATATCACAGAAATTA+AGG | - | chr1_4:70686471-70686490 | Msa0182270:CDS | 20.0% |
| !!! | TTATGTATGACTAATTTTGA+AGG | - | chr1_4:70687165-70687184 | Msa0182270:intron | 20.0% |
| !! | AAATTACATTTGAATGCTTT+CGG | + | chr1_4:70687390-70687409 | None:intergenic | 20.0% |
| !! | GATGTTTATCTTGTTTGTAA+AGG | + | chr1_4:70683907-70683926 | None:intergenic | 25.0% |
| ! | ATTTGAAAATCTACATCAGT+GGG | + | chr1_4:70684128-70684147 | None:intergenic | 25.0% |
| !! | TGATGTAGATTTTCAAATCT+GGG | - | chr1_4:70684130-70684149 | Msa0182270:three_prime_UTR | 25.0% |
| ! | CTACTTTGTTGAAATTCAAA+TGG | - | chr1_4:70684207-70684226 | Msa0182270:three_prime_UTR | 25.0% |
| !! | GGTCTTAATAATTGTTGTTA+TGG | - | chr1_4:70684622-70684641 | Msa0182270:intron | 25.0% |
| !!! | TGCAACTATATTTGTTGTAA+AGG | - | chr1_4:70684658-70684677 | Msa0182270:intron | 25.0% |
| ! | TATAGATTTCATCAGTGATA+AGG | + | chr1_4:70685358-70685377 | None:intergenic | 25.0% |
| ! | TTTACCTTCTCATAAATGAT+TGG | - | chr1_4:70685419-70685438 | Msa0182270:CDS | 25.0% |
| !! | TGTAAATCATTTTCTAACTC+TGG | + | chr1_4:70685507-70685526 | None:intergenic | 25.0% |
| ! | GAATGCATTAATCATTTCTT+CGG | + | chr1_4:70685618-70685637 | None:intergenic | 25.0% |
| ! | GATTAATGCATTCTTAACTA+AGG | - | chr1_4:70685625-70685644 | Msa0182270:intron | 25.0% |
| ! | GTACTTTAACTAACACTTTA+AGG | + | chr1_4:70685692-70685711 | None:intergenic | 25.0% |
| !!! | AGCAGATTGTTGATTTAAAA+AGG | - | chr1_4:70685911-70685930 | Msa0182270:intron | 25.0% |
| ! | ATCATTCTACAAAGATAACT+GGG | - | chr1_4:70685956-70685975 | Msa0182270:intron | 25.0% |
| ! | AAATGCAGAAGAAAAAGTTT+CGG | + | chr1_4:70686079-70686098 | None:intergenic | 25.0% |
| ! | AAAGGAAACATACATTATGT+GGG | - | chr1_4:70686234-70686253 | Msa0182270:CDS | 25.0% |
| !!! | TTTAGATTTTGGTGTAGAAT+AGG | - | chr1_4:70686277-70686296 | Msa0182270:CDS | 25.0% |
| ! | TCATTTGAATTTCCCATATA+GGG | + | chr1_4:70686363-70686382 | None:intergenic | 25.0% |
| ! | ATCATTTGAATTTCCCATAT+AGG | + | chr1_4:70686364-70686383 | None:intergenic | 25.0% |
| !! | CTTTTATTATCAGAATTGGA+AGG | + | chr1_4:70686387-70686406 | None:intergenic | 25.0% |
| ! | CTTCCAATTCTGATAATAAA+AGG | - | chr1_4:70686385-70686404 | Msa0182270:CDS | 25.0% |
| !! | GTTCCTTTTATTATCAGAAT+TGG | + | chr1_4:70686391-70686410 | None:intergenic | 25.0% |
| ! | AAGGGTTAAAGTATGTAATA+GGG | + | chr1_4:70686539-70686558 | None:intergenic | 25.0% |
| ! | AAGTTTAAATAAATGTCTGC+TGG | + | chr1_4:70686669-70686688 | None:intergenic | 25.0% |
| !! | ATTGTTTAGTATTGAACGTT+AGG | - | chr1_4:70686749-70686768 | Msa0182270:intron | 25.0% |
| ! | TTAATTATCAATTCACTGAG+AGG | + | chr1_4:70687081-70687100 | None:intergenic | 25.0% |
| !! | TGATAATTAAAGTGCTTGAT+CGG | - | chr1_4:70687091-70687110 | Msa0182270:intron | 25.0% |
| !! | CAGATGATGATTTTCTATTA+TGG | + | chr1_4:70687118-70687137 | None:intergenic | 25.0% |
| ! | GAAGAATAAACATTATGTTC+AGG | - | chr1_4:70687206-70687225 | Msa0182270:intron | 25.0% |
| ! | ACATTATGTTCAGGAAAAAA+AGG | - | chr1_4:70687215-70687234 | Msa0182270:intron | 25.0% |
| !! | TCTTGAATGCAACAATTTTT+CGG | + | chr1_4:70687436-70687455 | None:intergenic | 25.0% |
| ATCACTTCTTTACTTTCTCT+TGG | - | chr1_4:70683924-70683943 | Msa0182270:three_prime_UTR | 30.0% | |
| TTCTTTACTTTCTCTTGGAT+TGG | - | chr1_4:70683929-70683948 | Msa0182270:three_prime_UTR | 30.0% | |
| GATTTGAAAATCTACATCAG+TGG | + | chr1_4:70684129-70684148 | None:intergenic | 30.0% | |
| ! | CTGATGTAGATTTTCAAATC+TGG | - | chr1_4:70684129-70684148 | Msa0182270:three_prime_UTR | 30.0% |
| GATAGTGTATTATTAGCACA+TGG | + | chr1_4:70684184-70684203 | None:intergenic | 30.0% | |
| TGGTGTCTAAATAATTTCGT+GGG | + | chr1_4:70684235-70684254 | None:intergenic | 30.0% | |
| TTACATGTACGATATTGTGT+CGG | - | chr1_4:70684385-70684404 | Msa0182270:CDS | 30.0% | |
| ! | GTTACATTGATGATAGTATG+TGG | - | chr1_4:70684409-70684428 | Msa0182270:CDS | 30.0% |
| TCTCAGATAACTGTTCAAAA+CGG | - | chr1_4:70684601-70684620 | Msa0182270:intron | 30.0% | |
| !! | TCTATTAACTCCACTTTTCA+TGG | - | chr1_4:70684707-70684726 | Msa0182270:intron | 30.0% |
| ! | TGTTTGAAGTCTACAACTAA+AGG | - | chr1_4:70684822-70684841 | Msa0182270:intron | 30.0% |
| AAGTCTACAACTAAAGGAAA+TGG | - | chr1_4:70684828-70684847 | Msa0182270:intron | 30.0% | |
| AGTACCAATCATTTATGAGA+AGG | + | chr1_4:70685426-70685445 | None:intergenic | 30.0% | |
| ATCATCTTCATCCAAAATCT+TGG | - | chr1_4:70685587-70685606 | Msa0182270:intron | 30.0% | |
| TCATCTTCATCCAAAATCTT+GGG | - | chr1_4:70685588-70685607 | Msa0182270:intron | 30.0% | |
| AAGGAGTTCGTAACAATTAT+AGG | - | chr1_4:70685644-70685663 | Msa0182270:intron | 30.0% | |
| AGTTCGTAACAATTATAGGA+AGG | - | chr1_4:70685648-70685667 | Msa0182270:intron | 30.0% | |
| !! | AAGTACGATGATTCTTGTTT+TGG | - | chr1_4:70685706-70685725 | Msa0182270:intron | 30.0% |
| !!! | GATTCTTGTTTTGGTTTCTA+AGG | - | chr1_4:70685715-70685734 | Msa0182270:intron | 30.0% |
| TATCAAAACCACAAGTACAA+TGG | - | chr1_4:70685796-70685815 | Msa0182270:intron | 30.0% | |
| GATCATTCTACAAAGATAAC+TGG | - | chr1_4:70685955-70685974 | Msa0182270:intron | 30.0% | |
| ! | TATTTTGCTACTAATCTGCT+GGG | - | chr1_4:70686024-70686043 | Msa0182270:intron | 30.0% |
| AATGCAGAAGAAAAAGTTTC+GGG | + | chr1_4:70686078-70686097 | None:intergenic | 30.0% | |
| TTTGTCTTCATCTTCAGTTA+TGG | - | chr1_4:70686113-70686132 | Msa0182270:CDS | 30.0% | |
| TGTATGTTTCCTTTCAATTG+TGG | + | chr1_4:70686228-70686247 | None:intergenic | 30.0% | |
| GAAAGGAAACATACATTATG+TGG | - | chr1_4:70686233-70686252 | Msa0182270:CDS | 30.0% | |
| AAGGAAACATACATTATGTG+GGG | - | chr1_4:70686235-70686254 | Msa0182270:CDS | 30.0% | |
| AGAGGGATTGATCAAAATAA+TGG | + | chr1_4:70686513-70686532 | None:intergenic | 30.0% | |
| AGGGTTAAAGTATGTAATAG+GGG | + | chr1_4:70686538-70686557 | None:intergenic | 30.0% | |
| CAAGGGTTAAAGTATGTAAT+AGG | + | chr1_4:70686540-70686559 | None:intergenic | 30.0% | |
| ! | GTTTTACTTCTAGTCAAAAG+TGG | - | chr1_4:70686778-70686797 | Msa0182270:intron | 30.0% |
| TTTGTTGATGTTTGCAGTTA+TGG | - | chr1_4:70686810-70686829 | Msa0182270:intron | 30.0% | |
| CTTAACATTCCAAAACTATG+AGG | - | chr1_4:70686907-70686926 | Msa0182270:intron | 30.0% | |
| ! | CAAATAGTTCCTCATAGTTT+TGG | + | chr1_4:70686919-70686938 | None:intergenic | 30.0% |
| CAAAACTATGAGGAACTATT+TGG | - | chr1_4:70686917-70686936 | Msa0182270:intron | 30.0% | |
| TATTGACAATCCAAGTACAA+TGG | - | chr1_4:70687030-70687049 | Msa0182270:intron | 30.0% | |
| CTTACAACTTCTATCAAAAG+AGG | - | chr1_4:70687271-70687290 | Msa0182270:intron | 30.0% | |
| ! | TTCTTGTTGTCCATTATTGT+TGG | - | chr1_4:70687348-70687367 | Msa0182270:intron | 30.0% |
| ATTTCCATGACCAACAATAA+TGG | + | chr1_4:70687361-70687380 | None:intergenic | 30.0% | |
| GAGAAAAAAAGTGAGAGAGA+TGG | + | chr1_4:70683962-70683981 | None:intergenic | 35.0% | |
| ATCAGTGGGAATTTAGAAGT+AGG | + | chr1_4:70684114-70684133 | None:intergenic | 35.0% | |
| TTCAAATCTGGGCATATGTA+TGG | - | chr1_4:70684141-70684160 | Msa0182270:three_prime_UTR | 35.0% | |
| GTATTATTAGCACATGGAAG+TGG | + | chr1_4:70684178-70684197 | None:intergenic | 35.0% | |
| GTGGTGTCTAAATAATTTCG+TGG | + | chr1_4:70684236-70684255 | None:intergenic | 35.0% | |
| CAAGTCTCGCTAAATTTATG+TGG | + | chr1_4:70684255-70684274 | None:intergenic | 35.0% | |
| TTCTCAACACACACTCAAAT+TGG | + | chr1_4:70684290-70684309 | None:intergenic | 35.0% | |
| TGTCAGATTTCCCATTGAAT+TGG | - | chr1_4:70684529-70684548 | Msa0182270:intron | 35.0% | |
| TCCTATAGCTCCAATTCAAT+GGG | + | chr1_4:70684542-70684561 | None:intergenic | 35.0% | |
| TCAGCATTACAGTAAACAAG+TGG | + | chr1_4:70684886-70684905 | None:intergenic | 35.0% | |
| CGATCTGTCAAATCTTTCAT+TGG | - | chr1_4:70685099-70685118 | Msa0182270:intron | 35.0% | |
| CAAAGAGTTTGCAACACTAT+GGG | - | chr1_4:70685134-70685153 | Msa0182270:intron | 35.0% | |
| AAAGAGTTTGCAACACTATG+GGG | - | chr1_4:70685135-70685154 | Msa0182270:intron | 35.0% | |
| ACTATGGGGATTTGAATTCA+AGG | - | chr1_4:70685149-70685168 | Msa0182270:intron | 35.0% | |
| TCTGGTGACAATCATGATAA+GGG | - | chr1_4:70685282-70685301 | Msa0182270:CDS | 35.0% | |
| AGATTTCATCAGTGATAAGG+AGG | + | chr1_4:70685355-70685374 | None:intergenic | 35.0% | |
| ! | TTTTATGCTGATCACAGCAT+TGG | - | chr1_4:70685528-70685547 | Msa0182270:intron | 35.0% |
| ! | GATTTTGGATGAAGATGATG+TGG | + | chr1_4:70685586-70685605 | None:intergenic | 35.0% |
| GTTTCAGCTAATAGAAGAGA+GGG | - | chr1_4:70685933-70685952 | Msa0182270:intron | 35.0% | |
| ! | GTATTTTGCTACTAATCTGC+TGG | - | chr1_4:70686023-70686042 | Msa0182270:intron | 35.0% |
| ATGCAGAAGAAAAAGTTTCG+GGG | + | chr1_4:70686077-70686096 | None:intergenic | 35.0% | |
| CAAAATAACTCTCCATGCAA+GGG | + | chr1_4:70686144-70686163 | None:intergenic | 35.0% | |
| AAGTTCACTACAAAGTAACC+AGG | - | chr1_4:70686173-70686192 | Msa0182270:CDS | 35.0% | |
| TTAGGATTACTTGACGCTTA+AGG | + | chr1_4:70686416-70686435 | None:intergenic | 35.0% | |
| GGGTTAAAGTATGTAATAGG+GGG | + | chr1_4:70686537-70686556 | None:intergenic | 35.0% | |
| GAAATCATCTCGACAAACAA+GGG | + | chr1_4:70686557-70686576 | None:intergenic | 35.0% | |
| TGAAATCATCTCGACAAACA+AGG | + | chr1_4:70686558-70686577 | None:intergenic | 35.0% | |
| GACTATTGAAGTCAAATGTC+AGG | + | chr1_4:70686586-70686605 | None:intergenic | 35.0% | |
| ! | GACATTTGACTTCAATAGTC+TGG | - | chr1_4:70686586-70686605 | Msa0182270:five_prime_UTR | 35.0% |
| CTGTTTGATTAATGTGTGCA+AGG | + | chr1_4:70686620-70686639 | None:intergenic | 35.0% | |
| CAGCAAAATATTCAAGACCT+GGG | - | chr1_4:70686833-70686852 | Msa0182270:intron | 35.0% | |
| AACTATGAGGAACTATTTGG+AGG | - | chr1_4:70686920-70686939 | Msa0182270:intron | 35.0% | |
| GATCCAATTAGAGTGATGTT+TGG | - | chr1_4:70686950-70686969 | Msa0182270:intron | 35.0% | |
| AGACGTCTCTTATTCTTCAT+TGG | - | chr1_4:70686979-70686998 | Msa0182270:intron | 35.0% | |
| CTCTTATTCTTCATTGGAGA+AGG | - | chr1_4:70686985-70687004 | Msa0182270:intron | 35.0% | |
| AATTAGACCTCCATTGTACT+TGG | + | chr1_4:70687043-70687062 | None:intergenic | 35.0% | |
| CTGATTCTTATGATCGAAAG+CGG | - | chr1_4:70687135-70687154 | Msa0182270:intron | 35.0% | |
| TTGTCCATTATTGTTGGTCA+TGG | - | chr1_4:70687354-70687373 | Msa0182270:intron | 35.0% | |
| TTTATGGGAGTTAAGAGTCG+TGG | - | chr1_4:70684088-70684107 | Msa0182270:three_prime_UTR | 40.0% | |
| TCCCATTGAATTGGAGCTAT+AGG | - | chr1_4:70684538-70684557 | Msa0182270:intron | 40.0% | |
| CTCCTATAGCTCCAATTCAA+TGG | + | chr1_4:70684543-70684562 | None:intergenic | 40.0% | |
| TGAATTGGAGCTATAGGAGT+TGG | - | chr1_4:70684544-70684563 | Msa0182270:intron | 40.0% | |
| CCTGTTTAGTCCATGAAAAG+TGG | + | chr1_4:70684720-70684739 | None:intergenic | 40.0% | |
| !! | CCACTTTTCATGGACTAAAC+AGG | - | chr1_4:70684717-70684736 | Msa0182270:intron | 40.0% |
| GAGATTTCTCCTGATGCAAA+TGG | - | chr1_4:70684759-70684778 | Msa0182270:intron | 40.0% | |
| ! | TTGTAGATGCCATTTGCATC+AGG | + | chr1_4:70684771-70684790 | None:intergenic | 40.0% |
| ! | GTGAATTTTGCACAGCATTG+AGG | - | chr1_4:70684860-70684879 | Msa0182270:intron | 40.0% |
| TTGCATCACAGGATAGACAA+AGG | + | chr1_4:70684918-70684937 | None:intergenic | 40.0% | |
| TTGTCTATCCTGTGATGCAA+AGG | - | chr1_4:70684918-70684937 | Msa0182270:intron | 40.0% | |
| CCATTGGGCAAATGAATTGT+CGG | - | chr1_4:70684942-70684961 | Msa0182270:intron | 40.0% | |
| CATTGGGCAAATGAATTGTC+GGG | - | chr1_4:70684943-70684962 | Msa0182270:intron | 40.0% | |
| TGCGATCAAAAGCTACATGA+TGG | - | chr1_4:70685057-70685076 | Msa0182270:intron | 40.0% | |
| GCGATCAAAAGCTACATGAT+GGG | - | chr1_4:70685058-70685077 | Msa0182270:intron | 40.0% | |
| CCATAGTGTTGCAAACTCTT+TGG | + | chr1_4:70685136-70685155 | None:intergenic | 40.0% | |
| CCAAAGAGTTTGCAACACTA+TGG | - | chr1_4:70685133-70685152 | Msa0182270:intron | 40.0% | |
| !! | TGAAAACAGTGTCGATCAGA+AGG | - | chr1_4:70685176-70685195 | Msa0182270:CDS | 40.0% |
| GTCTGGTGACAATCATGATA+AGG | - | chr1_4:70685281-70685300 | Msa0182270:CDS | 40.0% | |
| ATGAAGCGATGAATCTTGTG+AGG | - | chr1_4:70685447-70685466 | Msa0182270:CDS | 40.0% | |
| TTTGGATGAAGATGATGTGG+AGG | + | chr1_4:70685583-70685602 | None:intergenic | 40.0% | |
| ! | CTTCGGTTTTCCCAAGATTT+TGG | + | chr1_4:70685601-70685620 | None:intergenic | 40.0% |
| CAAAACCACAAGTACAATGG+AGG | - | chr1_4:70685799-70685818 | Msa0182270:intron | 40.0% | |
| GGTTTCAGCTAATAGAAGAG+AGG | - | chr1_4:70685932-70685951 | Msa0182270:intron | 40.0% | |
| AAAGATAACTGGGCTACAAG+TGG | - | chr1_4:70685966-70685985 | Msa0182270:intron | 40.0% | |
| CTGGGAGAAGACAATTCTAT+CGG | - | chr1_4:70686042-70686061 | Msa0182270:CDS | 40.0% | |
| TGGGAGAAGACAATTCTATC+GGG | - | chr1_4:70686043-70686062 | Msa0182270:CDS | 40.0% | |
| CCAAAATAACTCTCCATGCA+AGG | + | chr1_4:70686145-70686164 | None:intergenic | 40.0% | |
| ! | CCTTGCATGGAGAGTTATTT+TGG | - | chr1_4:70686142-70686161 | Msa0182270:CDS | 40.0% |
| GGATAGATAAGTATCTGACC+TGG | + | chr1_4:70686194-70686213 | None:intergenic | 40.0% | |
| TGTTGTGAGCCACAATTGAA+AGG | - | chr1_4:70686216-70686235 | Msa0182270:CDS | 40.0% | |
| GCAGCAAAATATTCAAGACC+TGG | - | chr1_4:70686832-70686851 | Msa0182270:intron | 40.0% | |
| CAAGTTCTTCACATATTCCC+AGG | + | chr1_4:70686853-70686872 | None:intergenic | 40.0% | |
| TGGAATGTTAAGTCAACGTC+AGG | + | chr1_4:70686899-70686918 | None:intergenic | 40.0% | |
| CCACCAAACATCACTCTAAT+TGG | + | chr1_4:70686956-70686975 | None:intergenic | 40.0% | |
| CCAATTAGAGTGATGTTTGG+TGG | - | chr1_4:70686953-70686972 | Msa0182270:intron | 40.0% | |
| TGACAATCCAAGTACAATGG+AGG | - | chr1_4:70687033-70687052 | Msa0182270:intron | 40.0% | |
| CTGTGATGCAAAGGTCCATT+GGG | - | chr1_4:70684927-70684946 | Msa0182270:intron | 45.0% | |
| CCGACAATTCATTTGCCCAA+TGG | + | chr1_4:70684945-70684964 | None:intergenic | 45.0% | |
| ACAGCACGAGTTACACACAA+GGG | + | chr1_4:70684983-70685002 | None:intergenic | 45.0% | |
| AACAGCACGAGTTACACACA+AGG | + | chr1_4:70684984-70685003 | None:intergenic | 45.0% | |
| TCTTGCGTATGTTCAGTGCT+TGG | - | chr1_4:70685008-70685027 | Msa0182270:intron | 45.0% | |
| TTGACAGATCGTTTGCGATG+TGG | + | chr1_4:70685090-70685109 | None:intergenic | 45.0% | |
| GTTGCAAACTCTTTGGCAGA+AGG | + | chr1_4:70685129-70685148 | None:intergenic | 45.0% | |
| AAGCGATGAATCTTGTGAGG+AGG | - | chr1_4:70685450-70685469 | Msa0182270:CDS | 45.0% | |
| ! | GATGTGGAGGCTCACATTTT+AGG | + | chr1_4:70685570-70685589 | None:intergenic | 45.0% |
| TCAGACCTCCATTGTACTTG+TGG | + | chr1_4:70685807-70685826 | None:intergenic | 45.0% | |
| GGGAGAAGACAATTCTATCG+GGG | - | chr1_4:70686044-70686063 | Msa0182270:CDS | 45.0% | |
| ATAACTCTCCATGCAAGGGA+AGG | + | chr1_4:70686140-70686159 | None:intergenic | 45.0% | |
| TCAATTGTGGCTCACAACAG+TGG | + | chr1_4:70686215-70686234 | None:intergenic | 45.0% | |
| ATTATGTGGGGTACATCCCT+TGG | - | chr1_4:70686247-70686266 | Msa0182270:CDS | 45.0% | |
| AGTATGTAATAGGGGGCAGA+GGG | + | chr1_4:70686530-70686549 | None:intergenic | 45.0% | |
| AAGTATGTAATAGGGGGCAG+AGG | + | chr1_4:70686531-70686550 | None:intergenic | 45.0% | |
| !!! | ACTATTTATTTTTATTTTTA+TGG | - | chr1_4:70684072-70684091 | Msa0182270:three_prime_UTR | 5.0% |
| !!! | CTATTTATTTTTATTTTTAT+GGG | - | chr1_4:70684073-70684092 | Msa0182270:three_prime_UTR | 5.0% |
| !!! | TTTAAAATAATATTTTAACA+TGG | + | chr1_4:70687467-70687486 | None:intergenic | 5.0% |
| CCAATGGACCTTTGCATCAC+AGG | + | chr1_4:70684929-70684948 | None:intergenic | 50.0% | |
| CCTGTGATGCAAAGGTCCAT+TGG | - | chr1_4:70684926-70684945 | Msa0182270:intron | 50.0% | |
| ACGAGTTACACACAAGGGTC+CGG | + | chr1_4:70684978-70684997 | None:intergenic | 50.0% | |
| TCAGTCACTTCAACGACGTC+TGG | - | chr1_4:70685264-70685283 | Msa0182270:CDS | 50.0% | |
| AAGGGATCCAGCAGTCAACT+AGG | - | chr1_4:70685300-70685319 | Msa0182270:CDS | 50.0% | |
| ATCCAGCAGTCAACTAGGTC+AGG | - | chr1_4:70685305-70685324 | Msa0182270:CDS | 50.0% | |
| TACCTGACCTAGTTGACTGC+TGG | + | chr1_4:70685310-70685329 | None:intergenic | 50.0% | |
| ! | GTGGAGGCTCACATTTTAGG+AGG | + | chr1_4:70685567-70685586 | None:intergenic | 50.0% |
| GTTATGGACCTTCCCTTGCA+TGG | - | chr1_4:70686129-70686148 | Msa0182270:CDS | 50.0% | |
| GGGCAAATGAATTGTCGGGC+CGG | - | chr1_4:70684947-70684966 | Msa0182270:intron | 55.0% | |
| AGTTACACACAAGGGTCCGG+AGG | + | chr1_4:70684975-70684994 | None:intergenic | 55.0% | |
| AATTGTCGGGCCGGCACCTC+CGG | - | chr1_4:70684956-70684975 | Msa0182270:intron | 65.0% | |
| ! | ACACAAGGGTCCGGAGGTGC+CGG | + | chr1_4:70684969-70684988 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 70683863 | 70687503 | 70683863 | ID=Msa0182270;Name=Msa0182270 |
| chr1_4 | mRNA | 70683863 | 70687503 | 70683863 | ID=Msa0182270-mRNA-1;Parent=Msa0182270;Name=Msa0182270-mRNA-1;_AED=0.05;_eAED=0.05;_QI=257|1|1|1|0.66|0.5|4|443|344 |
| chr1_4 | exon | 70683863 | 70684539 | 70683863 | ID=Msa0182270-mRNA-1:exon:23664;Parent=Msa0182270-mRNA-1 |
| chr1_4 | exon | 70685172 | 70685492 | 70685172 | ID=Msa0182270-mRNA-1:exon:23663;Parent=Msa0182270-mRNA-1 |
| chr1_4 | exon | 70686040 | 70686627 | 70686040 | ID=Msa0182270-mRNA-1:exon:23662;Parent=Msa0182270-mRNA-1 |
| chr1_4 | exon | 70687355 | 70687503 | 70687355 | ID=Msa0182270-mRNA-1:exon:23661;Parent=Msa0182270-mRNA-1 |
| chr1_4 | five_prime_UTR | 70687355 | 70687503 | 70687355 | ID=Msa0182270-mRNA-1:five_prime_utr;Parent=Msa0182270-mRNA-1 |
| chr1_4 | five_prime_UTR | 70686520 | 70686627 | 70686520 | ID=Msa0182270-mRNA-1:five_prime_utr;Parent=Msa0182270-mRNA-1 |
| chr1_4 | CDS | 70686040 | 70686519 | 70686040 | ID=Msa0182270-mRNA-1:cds;Parent=Msa0182270-mRNA-1 |
| chr1_4 | CDS | 70685172 | 70685492 | 70685172 | ID=Msa0182270-mRNA-1:cds;Parent=Msa0182270-mRNA-1 |
| chr1_4 | CDS | 70684306 | 70684539 | 70684306 | ID=Msa0182270-mRNA-1:cds;Parent=Msa0182270-mRNA-1 |
| chr1_4 | three_prime_UTR | 70683863 | 70684305 | 70683863 | ID=Msa0182270-mRNA-1:three_prime_utr;Parent=Msa0182270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
