AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0717090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717090 MtrunA17_Chr5g0404891 96.162 495 5 1 54 548 127 607 0.0 985
Msa0717090 MtrunA17_Chr4g0014701 23.382 479 266 15 61 527 86 475 3.20e-25 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717090 AT4G36390.1 77.618 487 88 3 54 536 157 626 0.0 804
Msa0717090 AT1G72090.1 24.109 477 267 15 60 527 97 487 2.58e-27 116

Find 175 sgRNAs with CRISPR-Local

Find 578 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATTCATTCAAAGTTTA+AGG 0.103093 5_1:-10672254 Msa0717090:five_prime_UTR
CTTACTGGGGCTGTTGAAAT+TGG 0.146370 5_1:+10671987 None:intergenic
CAATCCTCCCCTAGGCTATT+TGG 0.186095 5_1:+10664830 None:intergenic
CTCAAAAGTCCTTCAGATTT+AGG 0.209173 5_1:+10672408 None:intergenic
CATTTCTGCATTATCTCTTA+TGG 0.218289 5_1:+10670678 None:intergenic
CAAAAGCACTAATTGAATTC+TGG 0.235386 5_1:+10670359 None:intergenic
AGTTCATCTGGATAATCTTT+AGG 0.241902 5_1:+10669998 None:intergenic
CATTGTAGCTGTTCACATTC+TGG 0.245538 5_1:+10670188 None:intergenic
AATAGTACACCATGGTTCTT+AGG 0.246688 5_1:-10664705 Msa0717090:three_prime_UTR
TCATTCAAAGTTTAAGGATA+TGG 0.256780 5_1:-10672248 Msa0717090:five_prime_UTR
TGCATTGCAGGTTGTCAATA+AGG 0.267397 5_1:+10664862 None:intergenic
TAGGGATTTGCCACGATTAC+TGG 0.271983 5_1:-10670467 Msa0717090:CDS
TTTGGTTTCTTAAAAGGAAT+TGG 0.279924 5_1:-10670630 Msa0717090:CDS
GGCAGAGGCTTAATTACTTT+TGG 0.281806 5_1:-10670648 Msa0717090:CDS
ATGATGTTTGTTACTGTTAT+CGG 0.309343 5_1:+10672297 None:intergenic
GTTCATCTGGATAATCTTTA+GGG 0.312079 5_1:+10669999 None:intergenic
GCTCCAGATACTGAACTAAT+TGG 0.313753 5_1:-10665300 Msa0717090:CDS
TGGTTTAGATGTTGCATTGC+AGG 0.321329 5_1:+10664850 None:intergenic
TTGCCAATTAGTTCAGTATC+TGG 0.330002 5_1:+10665297 None:intergenic
GATACTCGATTCAGACAAAA+TGG 0.355549 5_1:-10670518 Msa0717090:CDS
TGAGAGAGGTGGGAGAGCTT+TGG 0.362797 5_1:-10670243 Msa0717090:CDS
TCCTCCGAAAGTAGTTGTTT+TGG 0.364250 5_1:-10670569 Msa0717090:CDS
ATGTATGGCTGAGAGGTTAA+AGG 0.367483 5_1:-10670545 Msa0717090:CDS
AAGATGGAGAATGAAGTTTA+AGG 0.375853 5_1:+10672179 None:intergenic
AGGCTGAAGCAGGGTCCAAC+TGG 0.377077 5_1:-10670144 Msa0717090:CDS
GTGATTACCCTCCAAGTCAT+TGG 0.378967 5_1:+10672381 None:intergenic
AAAAGCACTAATTGAATTCT+GGG 0.379309 5_1:+10670360 None:intergenic
ACGTGCGGTGCATCTAGTCT+AGG 0.396655 5_1:+10672332 None:intergenic
AGGTCAGAACCACAGGCTTA+AGG 0.396666 5_1:-10670090 Msa0717090:CDS
TTTAAATATGTTGATACAAG+TGG 0.397259 5_1:-10664793 Msa0717090:three_prime_UTR
GTGGGAGAGCTTTGGAAAGA+GGG 0.397435 5_1:-10670235 Msa0717090:CDS
CTAAGCAGTGATTTCATTTG+TGG 0.399313 5_1:-10669815 Msa0717090:intron
ATGTGGGCCTGATGCTTATA+GGG 0.399994 5_1:-10670485 Msa0717090:CDS
GTGGCTAAAGAACTCAAATA+TGG 0.400205 5_1:+10672359 None:intergenic
AAAAGAAGTCGGTTATGATA+TGG 0.403035 5_1:-10665514 Msa0717090:CDS
AATATTATCTCTGCATTCTC+AGG 0.403373 5_1:+10670715 None:intergenic
CTCCTCTGCTTAGTTTCCTC+AGG 0.406909 5_1:+10665426 None:intergenic
TATGTGGGCCTGATGCTTAT+AGG 0.407996 5_1:-10670486 Msa0717090:CDS
GGTGGGAGAGCTTTGGAAAG+AGG 0.410297 5_1:-10670236 Msa0717090:CDS
AAAGAAATAAATTAATCAAA+TGG 0.413443 5_1:+10664729 None:intergenic
ACATCTTCCCTGTCTGAGAT+TGG 0.413673 5_1:+10665237 None:intergenic
ATGAGGATGGTTTGTGAGGA+GGG 0.419464 5_1:+10672116 None:intergenic
TCACTGCTTAGGGCCACATC+TGG 0.422985 5_1:+10669827 None:intergenic
TTACTGTTATCGGGCTGGAT+AGG 0.424942 5_1:+10672307 None:intergenic
GTGAAAGAAGTAACGCTTCT+TGG 0.424947 5_1:-10670211 Msa0717090:CDS
TTACTGGGGCTGTTGAAATT+GGG 0.425526 5_1:+10671988 None:intergenic
TGGAAAGCTAATGTCGCTAC+TGG 0.426721 5_1:-10670610 Msa0717090:CDS
CATCCCAAAACAACTACTTT+CGG 0.433324 5_1:+10670565 None:intergenic
GGAAAGCGATGAGAAGGTTC+TGG 0.433628 5_1:+10672069 None:intergenic
ACACAGCTTGTATTAGTTGA+AGG 0.451063 5_1:-10665336 Msa0717090:CDS
AGGAAAGTGTTACGACGAAC+AGG 0.456568 5_1:-10665367 Msa0717090:CDS
GTGAATCTGAAACGCATCTC+GGG 0.458313 5_1:+10670031 None:intergenic
TACTGTTATCGGGCTGGATA+GGG 0.458629 5_1:+10672308 None:intergenic
CACAAATGAAATCACTGCTT+AGG 0.458907 5_1:+10669816 None:intergenic
GAATTCTGGGAGATCCGAAC+TGG 0.459625 5_1:+10670373 None:intergenic
GGTTCTGACCTTTGATATGC+TGG 0.461148 5_1:+10670102 None:intergenic
CATTTGGATAATCTTATTTG+AGG 0.463002 5_1:-10664567 Msa0717090:three_prime_UTR
CGTGCGGTGCATCTAGTCTA+GGG 0.467635 5_1:+10672333 None:intergenic
TTGCTACTTCCTGATTGTGC+AGG 0.470855 5_1:+10669926 None:intergenic
TGATGTTTGTTACTGTTATC+GGG 0.471344 5_1:+10672298 None:intergenic
ATACATTTACCTGCACAATC+AGG 0.471854 5_1:-10669935 Msa0717090:CDS
ACAAATGAAATCACTGCTTA+GGG 0.474713 5_1:+10669817 None:intergenic
ATAATATAAAGCAGTTCATC+TGG 0.475681 5_1:+10669986 None:intergenic
GTTGGAAAAGAGGCTGAAGC+AGG 0.485081 5_1:-10670154 Msa0717090:CDS
GGCAAATCCCTATAAGCATC+AGG 0.485324 5_1:+10670478 None:intergenic
CAAGAGTGACAAGGGCCATC+GGG 0.489925 5_1:-10665277 Msa0717090:CDS
TCTACAAGGGCATCACTCTT+CGG 0.492794 5_1:-10665159 Msa0717090:CDS
CGATGAAGTGGCGGAGGGAA+GGG 0.493107 5_1:+10672032 None:intergenic
ATATCAAAGGTCAGAACCAC+AGG 0.497520 5_1:-10670097 Msa0717090:CDS
TCCTTCACTAAGTTTCCAGT+TGG 0.501341 5_1:+10670129 None:intergenic
GAGGTTGAGTATGGTCAGAA+AGG 0.503326 5_1:-10670442 Msa0717090:CDS
AACTACTTTCGGAGGACGTA+GGG 0.507112 5_1:+10670576 None:intergenic
TGAGCAATCCAATGACTTGG+AGG 0.507170 5_1:-10672389 Msa0717090:five_prime_UTR
CGCTCTCTGCCTCTAGTGAA+AGG 0.507564 5_1:+10670289 None:intergenic
ATGCTGATATTAATCCAGTT+CGG 0.509976 5_1:-10670387 Msa0717090:CDS
TTACTGGAAGAGGTTGAGTA+TGG 0.510735 5_1:-10670451 Msa0717090:CDS
TCTGGATAATCTTTAGGGTG+TGG 0.512551 5_1:+10670004 None:intergenic
TAACACTCTTCTTTCGCTTG+AGG 0.514673 5_1:-10670416 Msa0717090:CDS
TGAACTGCTTTATATTATGC+GGG 0.516942 5_1:-10669981 Msa0717090:CDS
GTGAGGTTGGTTGATGATAG+AGG 0.519781 5_1:+10672213 None:intergenic
GTTTGTTACTGTTATCGGGC+TGG 0.521603 5_1:+10672302 None:intergenic
GATTCAATAGTGAGAGAGGT+GGG 0.525819 5_1:-10670253 Msa0717090:CDS
CGTGAATCTGAAACGCATCT+CGG 0.527375 5_1:+10670030 None:intergenic
TTAAATATGTTGATACAAGT+GGG 0.529624 5_1:-10664792 Msa0717090:three_prime_UTR
TCAATCTGCCAATCTCAGAC+AGG 0.530932 5_1:-10665245 Msa0717090:CDS
TTCTGGAAACGTTGATGAGA+GGG 0.533036 5_1:+10672086 None:intergenic
CTTGAGCGATGAAGTGGCGG+AGG 0.533835 5_1:+10672026 None:intergenic
CATCATCGACATAGTTTCTG+TGG 0.538093 5_1:+10665451 None:intergenic
AAGTGGCCAGATAGATAACT+AGG 0.539425 5_1:+10664638 None:intergenic
AACACTTTCCTGTGCTCTCA+CGG 0.540238 5_1:+10665379 None:intergenic
ATGAACTGCTTTATATTATG+CGG 0.543355 5_1:-10669982 Msa0717090:CDS
TTGAAGAATCTGAGACAAGA+TGG 0.543494 5_1:+10672163 None:intergenic
TCATCGTAATTTACCTCTTG+CGG 0.543559 5_1:-10665004 Msa0717090:three_prime_UTR
GAGACTTTCCGTGAGAGCAC+AGG 0.544489 5_1:-10665387 Msa0717090:CDS
ACATCTAAACCAAATAGCCT+AGG 0.545201 5_1:-10664839 Msa0717090:three_prime_UTR
CAGAAATGAAAGTGTGGCAG+AGG 0.545396 5_1:-10670663 Msa0717090:CDS
TTTGTTGGAAAGCGATGAGA+AGG 0.549943 5_1:+10672063 None:intergenic
AAATTAATCAAATGGTTCAA+AGG 0.550408 5_1:+10664737 None:intergenic
GCAAGAGTGACAAGGGCCAT+CGG 0.550748 5_1:-10665278 Msa0717090:CDS
GCGATGAAGTGGCGGAGGGA+AGG 0.555405 5_1:+10672031 None:intergenic
TGCATCTAGTCTAGGGGTCG+TGG 0.555569 5_1:+10672340 None:intergenic
TTTGCCACGATTACTGGAAG+AGG 0.556479 5_1:-10670461 Msa0717090:CDS
ACTGTTTAATTTATGCAGCA+AGG 0.556643 5_1:+10665052 None:intergenic
GGCGTTGAGCAGTGTGAGGT+TGG 0.557634 5_1:+10672200 None:intergenic
TGCATCTGTGGTTGGAAAAG+AGG 0.558569 5_1:-10670164 Msa0717090:CDS
GCAAAATGCTTGAGAGAATG+AGG 0.568043 5_1:-10669907 Msa0717090:CDS
AAATAAAAGCCTAAATCTGA+AGG 0.571092 5_1:-10672417 Msa0717090:five_prime_UTR
CATCTAAACCAAATAGCCTA+GGG 0.572072 5_1:-10664838 Msa0717090:three_prime_UTR
ACATGTTTGCTTATAGCATG+AGG 0.572834 5_1:-10665488 Msa0717090:CDS
ACAAAGCGAAATCCTGTGGT+TGG 0.574953 5_1:-10665210 Msa0717090:CDS
AAAATGGTTGATGTTGTATG+TGG 0.575431 5_1:-10670502 Msa0717090:CDS
GAACTCAACTTCAGCACTAG+AGG 0.575813 5_1:+10666844 None:intergenic
GAGCAATCCAATGACTTGGA+GGG 0.576708 5_1:-10672388 Msa0717090:five_prime_UTR
TCGAAGTATTATTCCAGATG+TGG 0.577594 5_1:-10669840 Msa0717090:CDS
AAGCTTGAGCGATGAAGTGG+CGG 0.581337 5_1:+10672023 None:intergenic
CGGGCTGGATAGGGCACGTG+CGG 0.591941 5_1:+10672317 None:intergenic
AGAGGGCGTGAAGATGAGGA+TGG 0.592092 5_1:+10672103 None:intergenic
CATGTTTGCTTATAGCATGA+GGG 0.592181 5_1:-10665487 Msa0717090:CDS
ACTAATTGGCAAGAGTGACA+AGG 0.592315 5_1:-10665286 Msa0717090:CDS
TACAATGATGCATCTGTGGT+TGG 0.593326 5_1:-10670172 Msa0717090:CDS
TATGTCTCAAAGCTGCATGA+TGG 0.598276 5_1:-10664605 Msa0717090:three_prime_UTR
TCTCTCACTATTGAATCCAC+AGG 0.599420 5_1:+10670259 None:intergenic
CAGAGAGCGATCACGACCTG+TGG 0.599750 5_1:-10670275 Msa0717090:CDS
TCAACATAATCGCCAACCAC+AGG 0.600128 5_1:+10665198 None:intergenic
TGTATTGTACCTTTCACTAG+AGG 0.601685 5_1:-10670298 Msa0717090:CDS
CTGAGGAAACTAAGCAGAGG+AGG 0.601889 5_1:-10665425 Msa0717090:CDS
TTCAGATAACAAGATCTACA+AGG 0.602317 5_1:-10665173 Msa0717090:CDS
GTATACCTTGTGTCATGGCT+CGG 0.605239 5_1:+10666822 None:intergenic
GAGAAGCTTGAGCGATGAAG+TGG 0.605336 5_1:+10672020 None:intergenic
AAGCTAATGTCGCTACTGGA+AGG 0.608033 5_1:-10670606 Msa0717090:CDS
CAACTACTTTCGGAGGACGT+AGG 0.608360 5_1:+10670575 None:intergenic
GTTCTGGAAACGTTGATGAG+AGG 0.609095 5_1:+10672085 None:intergenic
AACTCAACTTCAGCACTAGA+GGG 0.610897 5_1:+10666845 None:intergenic
AATCACAGCAATCCTCCCCT+AGG 0.613214 5_1:+10664822 None:intergenic
CAATCTGCCAATCTCAGACA+GGG 0.616817 5_1:-10665244 Msa0717090:CDS
AAAACACTGCAACTATGCAA+TGG 0.616998 5_1:-10664955 Msa0717090:three_prime_UTR
ATCATCGACATAGTTTCTGT+GGG 0.618344 5_1:+10665452 None:intergenic
AGACATAACATAGGAACAAG+TGG 0.618999 5_1:+10664621 None:intergenic
GGGCTGTTGAAATTGGGAAG+CGG 0.619826 5_1:+10671994 None:intergenic
GGTTTAGTCAACGCCGCAAG+AGG 0.624335 5_1:+10664991 None:intergenic
CTATGTCGATGATGTTCCTG+AGG 0.625587 5_1:-10665442 Msa0717090:CDS
GATGAGGATGGTTTGTGAGG+AGG 0.627793 5_1:+10672115 None:intergenic
TGTGGATTCAATAGTGAGAG+AGG 0.627941 5_1:-10670257 Msa0717090:CDS
GATGAGAGGGCGTGAAGATG+AGG 0.629719 5_1:+10672099 None:intergenic
GTGCGGTGCATCTAGTCTAG+GGG 0.631249 5_1:+10672334 None:intergenic
GAGTTCCGAGCCATGACACA+AGG 0.635597 5_1:-10666827 Msa0717090:intron
TTTCTTTAAATAGTACACCA+TGG 0.642670 5_1:-10664713 Msa0717090:three_prime_UTR
GGATTCAATAGTGAGAGAGG+TGG 0.642987 5_1:-10670254 Msa0717090:CDS
CTAATTGGCAAGAGTGACAA+GGG 0.645058 5_1:-10665285 Msa0717090:CDS
TTAAGGCGTTGAGCAGTGTG+AGG 0.645466 5_1:+10672196 None:intergenic
ATAATGCAGAAATGAAAGTG+TGG 0.645760 5_1:-10670669 Msa0717090:CDS
TCCAACTGGAAACTTAGTGA+AGG 0.647645 5_1:-10670130 Msa0717090:CDS
CAGCTACAATGATGCATCTG+TGG 0.649965 5_1:-10670176 Msa0717090:CDS
TCAACCTCTTCCAGTAATCG+TGG 0.650837 5_1:+10670457 None:intergenic
TAAACCAAATAGCCTAGGGG+AGG 0.652779 5_1:-10664834 Msa0717090:three_prime_UTR
TTGAGCGATGAAGTGGCGGA+GGG 0.653715 5_1:+10672027 None:intergenic
ATGATGTATACCTTGTGTCA+TGG 0.654711 5_1:+10666817 None:intergenic
TTGACTCTAGTAAAAGAAGT+CGG 0.654807 5_1:-10665525 Msa0717090:CDS
ATCAGAAAACCTTAAGCCTG+TGG 0.659203 5_1:+10670081 None:intergenic
AAGTGTTACGACGAACAGGT+TGG 0.662080 5_1:-10665363 Msa0717090:CDS
GCAGCTTTGAGACATAACAT+AGG 0.662160 5_1:+10664612 None:intergenic
CCCAAAACAACTACTTTCGG+AGG 0.662371 5_1:+10670568 None:intergenic
TAATACAAAGCGAAATCCTG+TGG 0.667447 5_1:-10665214 Msa0717090:CDS
GATTGACAAATATTACCCGA+TGG 0.668056 5_1:+10665262 None:intergenic
CATCAGACTCCTAAGAACCA+TGG 0.670403 5_1:+10664696 None:intergenic
TCAGATAACAAGATCTACAA+GGG 0.670870 5_1:-10665172 Msa0717090:CDS
TTGGAAAAGAGGCTGAAGCA+GGG 0.678208 5_1:-10670153 Msa0717090:CDS
AGCACACGGAAGATTTAATG+TGG 0.685789 5_1:-10664760 Msa0717090:three_prime_UTR
AAATGGTTGATGTTGTATGT+GGG 0.688187 5_1:-10670501 Msa0717090:CDS
GAAGATGAGGATGGTTTGTG+AGG 0.690427 5_1:+10672112 None:intergenic
ATGCTTGAGAGAATGAGGCG+AGG 0.692173 5_1:-10669902 Msa0717090:CDS
TTCCTGAGGAAACTAAGCAG+AGG 0.694319 5_1:-10665428 Msa0717090:CDS
GAGGCGAGGATATACTCGAG+AGG 0.697869 5_1:-10669888 Msa0717090:CDS
GTGGGCTTTGATGAAGCACA+CGG 0.708377 5_1:-10664774 Msa0717090:three_prime_UTR
ATCTAAACCAAATAGCCTAG+GGG 0.713673 5_1:-10664837 Msa0717090:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTTAATGTAAATATA+AGG + chr5_1:10665895-10665914 None:intergenic 10.0%
!!! CTATTAAAAAAACAATTTTA+AGG + chr5_1:10667376-10667395 None:intergenic 10.0%
!!! TTTTAGAAAAAAATAGATTT+TGG - chr5_1:10669816-10669835 Msa0717090:CDS 10.0%
!! AAAGAAATAAATTAATCAAA+TGG + chr5_1:10672179-10672198 None:intergenic 10.0%
!!! TTTATCTTTTATTGTAGAAA+TGG - chr5_1:10665925-10665944 Msa0717090:intron 15.0%
!! AAGAAAATAAAAGAAAAACA+AGG + chr5_1:10667138-10667157 None:intergenic 15.0%
!! TAGTAAATAACAAATTTACA+AGG + chr5_1:10667852-10667871 None:intergenic 15.0%
!!! TAAGTTTTTGTATAAAAACA+AGG + chr5_1:10668134-10668153 None:intergenic 15.0%
!!! TTTTATACAAAAACTTACAA+AGG - chr5_1:10668137-10668156 Msa0717090:intron 15.0%
!!! TTCTTTCTATTATTATTTCT+GGG - chr5_1:10668423-10668442 Msa0717090:intron 15.0%
!! AAAAAGATCTTAATAAATTC+AGG + chr5_1:10671009-10671028 None:intergenic 15.0%
!! ATTCATTCATTCAAAGTTTA+AGG - chr5_1:10664651-10664670 Msa0717090:three_prime_UTR 20.0%
!!! TTTTGAGATAAAAACTTACT+GGG + chr5_1:10664935-10664954 None:intergenic 20.0%
!!! TTTTTGAGATAAAAACTTAC+TGG + chr5_1:10664936-10664955 None:intergenic 20.0%
!!! AGATAGAATTTTTATGAAGT+GGG + chr5_1:10665007-10665026 None:intergenic 20.0%
!!! AAGATAGAATTTTTATGAAG+TGG + chr5_1:10665008-10665027 None:intergenic 20.0%
!!! TCATGTCATTTCATATTTAT+AGG + chr5_1:10665349-10665368 None:intergenic 20.0%
!! TGGCATATAAAAATAACTTA+TGG + chr5_1:10665846-10665865 None:intergenic 20.0%
!!! ATTACTTTTGGTTTCTTAAA+AGG - chr5_1:10666269-10666288 Msa0717090:intron 20.0%
!! AATTCAAGTCATATCATTAA+TGG - chr5_1:10667511-10667530 Msa0717090:intron 20.0%
!! AAATAATCTTTACTCTCAAT+TGG + chr5_1:10667614-10667633 None:intergenic 20.0%
!! AAGAAAGTGAAACATTAATA+AGG + chr5_1:10667736-10667755 None:intergenic 20.0%
!!! TTTTTGTATAAAAACAAGGT+AGG + chr5_1:10668130-10668149 None:intergenic 20.0%
!! CAATAATCACTAAAAAATCA+TGG + chr5_1:10668175-10668194 None:intergenic 20.0%
!! CTTCTTTCTATTATTATTTC+TGG - chr5_1:10668422-10668441 Msa0717090:intron 20.0%
!! AAATTAAAACCAACCATAAT+TGG + chr5_1:10669117-10669136 None:intergenic 20.0%
!!! AATTATGGTTGGTTTTAATT+TGG - chr5_1:10669116-10669135 Msa0717090:intron 20.0%
!!! TTTTAATCTACAAACAGTAT+TGG + chr5_1:10669219-10669238 None:intergenic 20.0%
!! ATACTGTTTGTAGATTAAAA+AGG - chr5_1:10669219-10669238 Msa0717090:intron 20.0%
!! TACTGTTTGTAGATTAAAAA+GGG - chr5_1:10669220-10669239 Msa0717090:intron 20.0%
!!! TCTATTTTTTTCTAAAACCA+AGG + chr5_1:10669813-10669832 None:intergenic 20.0%
!!! ATGAACGATTTTTCATTTTA+AGG - chr5_1:10669849-10669868 Msa0717090:CDS 20.0%
!! TAAACATGATTATGAGAAAA+TGG + chr5_1:10670201-10670220 None:intergenic 20.0%
!! TTTAAATATGTTGATACAAG+TGG - chr5_1:10672112-10672131 Msa0717090:CDS 20.0%
!! TTAAATATGTTGATACAAGT+GGG - chr5_1:10672113-10672132 Msa0717090:CDS 20.0%
!! AAATTAATCAAATGGTTCAA+AGG + chr5_1:10672171-10672190 None:intergenic 20.0%
!! GAAAAAGATTAGAAAACATT+TGG - chr5_1:10672322-10672341 Msa0717090:five_prime_UTR 20.0%
! AAATAAAAGCCTAAATCTGA+AGG - chr5_1:10664488-10664507 Msa0717090:three_prime_UTR 25.0%
!! ATGATGTTTGTTACTGTTAT+CGG + chr5_1:10664611-10664630 None:intergenic 25.0%
! TCATTCAAAGTTTAAGGATA+TGG - chr5_1:10664657-10664676 Msa0717090:three_prime_UTR 25.0%
!! TTTGAGATAAAAACTTACTG+GGG + chr5_1:10664934-10664953 None:intergenic 25.0%
! TTAATGAAACATGCAAGAAT+TGG + chr5_1:10665044-10665063 None:intergenic 25.0%
! TCACTCATTAGTCATTATTT+AGG - chr5_1:10665118-10665137 Msa0717090:CDS 25.0%
! CACTCATTAGTCATTATTTA+GGG - chr5_1:10665119-10665138 Msa0717090:CDS 25.0%
!!! AGCTTATAGCTTATTTTGAT+AGG + chr5_1:10665472-10665491 None:intergenic 25.0%
! TCAAATGAACGTTAATGATA+TGG - chr5_1:10666114-10666133 Msa0717090:intron 25.0%
!! TTTGGTTTCTTAAAAGGAAT+TGG - chr5_1:10666275-10666294 Msa0717090:intron 25.0%
!!! AAAAGCACTAATTGAATTCT+GGG + chr5_1:10666548-10666567 None:intergenic 25.0%
!!! TTCAATTAGTGCTTTTGTTT+CGG - chr5_1:10666552-10666571 Msa0717090:intron 25.0%
! ATAATATAAAGCAGTTCATC+TGG + chr5_1:10666922-10666941 None:intergenic 25.0%
! ATGAACTGCTTTATATTATG+CGG - chr5_1:10666923-10666942 Msa0717090:intron 25.0%
!! TTAATTTGACTTTCTGCAAT+CGG - chr5_1:10667167-10667186 Msa0717090:intron 25.0%
! TCGCTTATCAATTGAAAATA+AGG + chr5_1:10667197-10667216 None:intergenic 25.0%
!! TATTTTCAATTGATAAGCGA+TGG - chr5_1:10667197-10667216 Msa0717090:intron 25.0%
!!! AAACAATTTTAAGGACAGTT+TGG + chr5_1:10667367-10667386 None:intergenic 25.0%
!! TTACTCTCAATTGGTTTATA+AGG + chr5_1:10667605-10667624 None:intergenic 25.0%
! ACAATGAATCTAAACTACTT+GGG + chr5_1:10667781-10667800 None:intergenic 25.0%
! TACAATGAATCTAAACTACT+TGG + chr5_1:10667782-10667801 None:intergenic 25.0%
! GCTTGCTTAATTTATATACA+TGG + chr5_1:10667887-10667906 None:intergenic 25.0%
!! AGACTTTGTTTGAACTTAAT+TGG - chr5_1:10668042-10668061 Msa0717090:intron 25.0%
!! GACTTTGTTTGAACTTAATT+GGG - chr5_1:10668043-10668062 Msa0717090:intron 25.0%
!! ACTTTGTTTGAACTTAATTG+GGG - chr5_1:10668044-10668063 Msa0717090:intron 25.0%
!! CAATTAGGAAATCATTCTTT+TGG - chr5_1:10668383-10668402 Msa0717090:intron 25.0%
! TTCATACCATACTAATGTTT+GGG - chr5_1:10668532-10668551 Msa0717090:intron 25.0%
!! AGGTTACAAGAAAATTTTGT+GGG + chr5_1:10668801-10668820 None:intergenic 25.0%
!! TAGGTTACAAGAAAATTTTG+TGG + chr5_1:10668802-10668821 None:intergenic 25.0%
! ATTGGAGAAGAATAAAACAT+GGG - chr5_1:10668898-10668917 Msa0717090:intron 25.0%
!! AAAAATATGTTGGTTGCAAA+TGG - chr5_1:10668945-10668964 Msa0717090:intron 25.0%
!! AAAATATGTTGGTTGCAAAT+GGG - chr5_1:10668946-10668965 Msa0717090:intron 25.0%
! ATGATAAAGTATAAAGCTGA+CGG - chr5_1:10668974-10668993 Msa0717090:intron 25.0%
!! TTGACTTTATTTGTATCCTA+AGG + chr5_1:10669309-10669328 None:intergenic 25.0%
! TTAGGATACAAATAAAGTCA+AGG - chr5_1:10669308-10669327 Msa0717090:intron 25.0%
!!! TTATTTTGACTCGAAATGAT+TGG - chr5_1:10669401-10669420 Msa0717090:intron 25.0%
! AAGTTGAGATAAAAACACTT+TGG - chr5_1:10669461-10669480 Msa0717090:intron 25.0%
!! ATAAATCACAAATTTGCTCA+AGG - chr5_1:10669551-10669570 Msa0717090:intron 25.0%
!!! TTTTATTTGTACTCTGTACA+TGG - chr5_1:10670284-10670303 Msa0717090:CDS 25.0%
! TTTAAATAGGTCTAGGAAAA+TGG + chr5_1:10670448-10670467 None:intergenic 25.0%
! GTGAAAATTTAAATAGGTCT+AGG + chr5_1:10670455-10670474 None:intergenic 25.0%
!!! TACTTGCTATACAAATACAA+TGG + chr5_1:10670496-10670515 None:intergenic 25.0%
! TCTTATGATGTTCCATTTAT+TGG + chr5_1:10670617-10670636 None:intergenic 25.0%
! TTACCTCTAAACTTATAGTT+TGG + chr5_1:10670831-10670850 None:intergenic 25.0%
! ACTATAAGTTTAGAGGTAAA+TGG - chr5_1:10670832-10670851 Msa0717090:intron 25.0%
!! AGAAACTCTATGATTTTGTT+GGG + chr5_1:10671043-10671062 None:intergenic 25.0%
!! AAGAAACTCTATGATTTTGT+TGG + chr5_1:10671044-10671063 None:intergenic 25.0%
!! AAATCATAGAGTTTCTTTTG+TGG - chr5_1:10671047-10671066 Msa0717090:intron 25.0%
! GTCTGTGAAATAAAACAATA+AGG + chr5_1:10671249-10671268 None:intergenic 25.0%
!! GAGTTCATTTTACAATAATC+TGG - chr5_1:10671793-10671812 Msa0717090:intron 25.0%
!! TTGACTAAACCACATTTTAT+GGG - chr5_1:10671926-10671945 Msa0717090:intron 25.0%
! TTTCTTTAAATAGTACACCA+TGG - chr5_1:10672192-10672211 Msa0717090:five_prime_UTR 25.0%
!! CATTTGGATAATCTTATTTG+AGG - chr5_1:10672338-10672357 Msa0717090:five_prime_UTR 25.0%
! TGATGTTTGTTACTGTTATC+GGG + chr5_1:10664610-10664629 None:intergenic 30.0%
AAGATGGAGAATGAAGTTTA+AGG + chr5_1:10664729-10664748 None:intergenic 30.0%
! GCAAAGTTGCAAATTTTACT+TGG - chr5_1:10665065-10665084 Msa0717090:exon 30.0%
CTTTACTTGACATACAATAG+TGG - chr5_1:10665203-10665222 Msa0717090:CDS 30.0%
! ACTTATAAGCTAGCTTAAAG+TGG - chr5_1:10665270-10665289 Msa0717090:CDS 30.0%
TTGATTGAATTTGCAGTGTT+TGG - chr5_1:10665302-10665321 Msa0717090:CDS 30.0%
! TTTTGTAAGTAAAATGCCAG+TGG - chr5_1:10665402-10665421 Msa0717090:CDS 30.0%
GCTATAAGCTCATGAAAAAA+AGG - chr5_1:10665482-10665501 Msa0717090:CDS 30.0%
TTGATCTACTCTTCTTACAA+CGG + chr5_1:10665576-10665595 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - chr5_1:10665577-10665596 Msa0717090:intron 30.0%
! CAATGAGTTGGATACAAATT+TGG - chr5_1:10665664-10665683 Msa0717090:intron 30.0%
! TTTGGTTTATGATAGAACAC+TGG - chr5_1:10665682-10665701 Msa0717090:intron 30.0%
!!! TTTTATTTGTAGCCTTGTAG+CGG - chr5_1:10666042-10666061 Msa0717090:intron 30.0%
! CTGCATTTTTCATTATAGAC+AGG + chr5_1:10666147-10666166 None:intergenic 30.0%
CTGTCTATAATGAAAAATGC+AGG - chr5_1:10666145-10666164 Msa0717090:intron 30.0%
AATATTATCTCTGCATTCTC+AGG + chr5_1:10666193-10666212 None:intergenic 30.0%
CATTTCTGCATTATCTCTTA+TGG + chr5_1:10666230-10666249 None:intergenic 30.0%
ATAATGCAGAAATGAAAGTG+TGG - chr5_1:10666236-10666255 Msa0717090:intron 30.0%
! AAAATGGTTGATGTTGTATG+TGG - chr5_1:10666403-10666422 Msa0717090:intron 30.0%
! AAATGGTTGATGTTGTATGT+GGG - chr5_1:10666404-10666423 Msa0717090:intron 30.0%
ATGCTGATATTAATCCAGTT+CGG - chr5_1:10666518-10666537 Msa0717090:intron 30.0%
!! CAAAAGCACTAATTGAATTC+TGG + chr5_1:10666549-10666568 None:intergenic 30.0%
GTTCATCTGGATAATCTTTA+GGG + chr5_1:10666909-10666928 None:intergenic 30.0%
AGTTCATCTGGATAATCTTT+AGG + chr5_1:10666910-10666929 None:intergenic 30.0%
TGAACTGCTTTATATTATGC+GGG - chr5_1:10666924-10666943 Msa0717090:intron 30.0%
ACAAATGAAATCACTGCTTA+GGG + chr5_1:10667091-10667110 None:intergenic 30.0%
GATGGAGTTAAACATTTACT+CGG - chr5_1:10667215-10667234 Msa0717090:intron 30.0%
!! TTAAACATTTACTCGGTGTT+TGG - chr5_1:10667222-10667241 Msa0717090:intron 30.0%
GCATGACAAAGAAATAATGT+CGG + chr5_1:10667465-10667484 None:intergenic 30.0%
! AATCTCAAATCTAGAACTTC+TGG - chr5_1:10667486-10667505 Msa0717090:intron 30.0%
TTATAGAAGGTGGAGTAAAA+GGG + chr5_1:10667547-10667566 None:intergenic 30.0%
! TTTTACTCCACCTTCTATAA+GGG - chr5_1:10667547-10667566 Msa0717090:intron 30.0%
AATCCAATATCCCTTATAGA+AGG + chr5_1:10667560-10667579 None:intergenic 30.0%
! CAATTGGTTTATAAGGAGAA+GGG + chr5_1:10667598-10667617 None:intergenic 30.0%
! TCAATTGGTTTATAAGGAGA+AGG + chr5_1:10667599-10667618 None:intergenic 30.0%
GAGATGAGAATGTTATATGT+TGG - chr5_1:10667702-10667721 Msa0717090:intron 30.0%
CAATGAATCTAAACTACTTG+GGG + chr5_1:10667780-10667799 None:intergenic 30.0%
GAACATGTTCAATGTATCTT+AGG - chr5_1:10667811-10667830 Msa0717090:intron 30.0%
AAATTAAGCAAGCGTATTGT+TGG - chr5_1:10667894-10667913 Msa0717090:intron 30.0%
AATTAAGCAAGCGTATTGTT+GGG - chr5_1:10667895-10667914 Msa0717090:intron 30.0%
! AAAGAAGATCGTTCTAGATT+AGG + chr5_1:10667977-10667996 None:intergenic 30.0%
AACAGTTGTATTAAATCACC+TGG - chr5_1:10668001-10668020 Msa0717090:intron 30.0%
! CTTTGTTTGAACTTAATTGG+GGG - chr5_1:10668045-10668064 Msa0717090:intron 30.0%
!!! AAGGACATTTTTCAAGGTTA+TGG + chr5_1:10668088-10668107 None:intergenic 30.0%
! AACTTGAAGGACATTTTTCA+AGG + chr5_1:10668094-10668113 None:intergenic 30.0%
! AGGTTTAGAGTTTAGAAAGT+TGG - chr5_1:10668226-10668245 Msa0717090:intron 30.0%
!!! TTGGACATTTTAGTTAGAGA+AGG - chr5_1:10668245-10668264 Msa0717090:intron 30.0%
!!! TGGACATTTTAGTTAGAGAA+GGG - chr5_1:10668246-10668265 Msa0717090:intron 30.0%
GAATGACCTTTATTATTGTG+TGG - chr5_1:10668268-10668287 Msa0717090:intron 30.0%
TTGGTTCCACACAATAATAA+AGG + chr5_1:10668277-10668296 None:intergenic 30.0%
AATTAGTGAGAATTTCAGTG+TGG + chr5_1:10668309-10668328 None:intergenic 30.0%
! ATGTTTTTCCAGTCTCAATT+AGG - chr5_1:10668368-10668387 Msa0717090:intron 30.0%
AATGATTTCCTAATTGAGAC+TGG + chr5_1:10668379-10668398 None:intergenic 30.0%
! TTAGGAAATCATTCTTTTGG+AGG - chr5_1:10668386-10668405 Msa0717090:intron 30.0%
! AATAGAAAGAAGCATAACTG+TGG + chr5_1:10668414-10668433 None:intergenic 30.0%
GTTCATACCATACTAATGTT+TGG - chr5_1:10668531-10668550 Msa0717090:intron 30.0%
TCATACCATACTAATGTTTG+GGG - chr5_1:10668533-10668552 Msa0717090:intron 30.0%
! GTTTCTTTTCTGATGACAAT+TGG + chr5_1:10668705-10668724 None:intergenic 30.0%
! TCATGAGAAATTTTCAACTG+AGG + chr5_1:10668769-10668788 None:intergenic 30.0%
ACTACCTCAAAAACATTACT+GGG + chr5_1:10668840-10668859 None:intergenic 30.0%
TACTACCTCAAAAACATTAC+TGG + chr5_1:10668841-10668860 None:intergenic 30.0%
!!! TGTTTTTGAGGTAGTATCTT+AGG - chr5_1:10668845-10668864 Msa0717090:intron 30.0%
CATTGGAGAAGAATAAAACA+TGG - chr5_1:10668897-10668916 Msa0717090:intron 30.0%
TTGGAGAAGAATAAAACATG+GGG - chr5_1:10668899-10668918 Msa0717090:intron 30.0%
!!! CCAACATATTTTTTTCCTTC+AGG + chr5_1:10668938-10668957 None:intergenic 30.0%
CCTGAAGGAAAAAAATATGT+TGG - chr5_1:10668935-10668954 Msa0717090:intron 30.0%
TGATAAAGTATAAAGCTGAC+GGG - chr5_1:10668975-10668994 Msa0717090:intron 30.0%
!! GCATTCATTTTAATGCAACT+AGG + chr5_1:10669068-10669087 None:intergenic 30.0%
TGAAGAACAAGTTTCTACAT+GGG - chr5_1:10669141-10669160 Msa0717090:intron 30.0%
ACAACACTTTCACAATATCT+TGG + chr5_1:10669194-10669213 None:intergenic 30.0%
!! GATTAAAAAGGGCATTAGAT+AGG - chr5_1:10669231-10669250 Msa0717090:intron 30.0%
TTCTTAAAACACTCAACTTC+AGG - chr5_1:10669344-10669363 Msa0717090:intron 30.0%
!! GTATTTTCTGAGAATTGAAG+TGG - chr5_1:10669492-10669511 Msa0717090:intron 30.0%
ATATGAAAATACCTCTCTTG+GGG + chr5_1:10669522-10669541 None:intergenic 30.0%
GATATGAAAATACCTCTCTT+GGG + chr5_1:10669523-10669542 None:intergenic 30.0%
AGATATGAAAATACCTCTCT+TGG + chr5_1:10669524-10669543 None:intergenic 30.0%
TCCTAGAGAAGTTCATTTAT+TGG - chr5_1:10669995-10670014 Msa0717090:CDS 30.0%
ACCAATAAATGAACTTCTCT+AGG + chr5_1:10669999-10670018 None:intergenic 30.0%
ACATCATACATGAACTACTT+TGG - chr5_1:10670104-10670123 Msa0717090:CDS 30.0%
TCCAAAAAAACACATTGAAG+TGG - chr5_1:10670227-10670246 Msa0717090:CDS 30.0%
!!! TCCACTTCAATGTGTTTTTT+TGG + chr5_1:10670231-10670250 None:intergenic 30.0%
GTACAGAGTACAAATAAAAC+CGG + chr5_1:10670283-10670302 None:intergenic 30.0%
! GGTTTTACAAGGATAACTTT+TGG - chr5_1:10670305-10670324 Msa0717090:CDS 30.0%
AGGAAAATGGAACATAAATG+AGG + chr5_1:10670435-10670454 None:intergenic 30.0%
AGGGGAGTGAAAATTTAAAT+AGG + chr5_1:10670461-10670480 None:intergenic 30.0%
ACAATGGATCTAAACTACTA+GGG + chr5_1:10670480-10670499 None:intergenic 30.0%
TACAATGGATCTAAACTACT+AGG + chr5_1:10670481-10670500 None:intergenic 30.0%
CTACTATCTTCTTTACCATA+GGG + chr5_1:10670687-10670706 None:intergenic 30.0%
TCTACTATCTTCTTTACCAT+AGG + chr5_1:10670688-10670707 None:intergenic 30.0%
!! TAGTAGATACTTGTTGTAGA+TGG - chr5_1:10670701-10670720 Msa0717090:CDS 30.0%
! TATAGTTTGGCCTATTTCTT+TGG + chr5_1:10670818-10670837 None:intergenic 30.0%
! AGAGGTAAATGGTCTATTTT+TGG - chr5_1:10670843-10670862 Msa0717090:intron 30.0%
!! GAGGTAAATGGTCTATTTTT+GGG - chr5_1:10670844-10670863 Msa0717090:intron 30.0%
TTGGTTGTTTAACATTTCCA+AGG - chr5_1:10670943-10670962 Msa0717090:intron 30.0%
! GAAACTCTATGATTTTGTTG+GGG + chr5_1:10671042-10671061 None:intergenic 30.0%
TACTTACAAAATAAGCATGC+TGG + chr5_1:10671205-10671224 None:intergenic 30.0%
AATTATAAGACTGCAATCAG+AGG + chr5_1:10671298-10671317 None:intergenic 30.0%
TTGCAAATTGCAATTCTAAC+AGG - chr5_1:10671320-10671339 Msa0717090:intron 30.0%
TTGACTCTAGTAAAAGAAGT+CGG - chr5_1:10671380-10671399 Msa0717090:intron 30.0%
AAAAGAAGTCGGTTATGATA+TGG - chr5_1:10671391-10671410 Msa0717090:intron 30.0%
TTCAGATAACAAGATCTACA+AGG - chr5_1:10671732-10671751 Msa0717090:intron 30.0%
TCAGATAACAAGATCTACAA+GGG - chr5_1:10671733-10671752 Msa0717090:intron 30.0%
! ACTGTTTAATTTATGCAGCA+AGG + chr5_1:10671856-10671875 None:intergenic 30.0%
! GTTGACTAAACCACATTTTA+TGG - chr5_1:10671925-10671944 Msa0717090:intron 30.0%
! AGTGTTTTTCCCATAAAATG+TGG + chr5_1:10671938-10671957 None:intergenic 30.0%
! AGTTTTCCTAGTTATCTATC+TGG - chr5_1:10672261-10672280 Msa0717090:five_prime_UTR 30.0%
CTCAAAAGTCCTTCAGATTT+AGG + chr5_1:10664500-10664519 None:intergenic 35.0%
! TTTTGAGCAATCCAATGACT+TGG - chr5_1:10664513-10664532 Msa0717090:three_prime_UTR 35.0%
GTGGCTAAAGAACTCAAATA+TGG + chr5_1:10664549-10664568 None:intergenic 35.0%
! TTGAAGAATCTGAGACAAGA+TGG + chr5_1:10664745-10664764 None:intergenic 35.0%
GAACACTTGTGACATTGTTT+AGG - chr5_1:10665180-10665199 Msa0717090:CDS 35.0%
! GCTAATAAGCTAGCTTATAC+TGG - chr5_1:10665229-10665248 Msa0717090:CDS 35.0%
GCAGTGTTTGGTATAATTAG+CGG - chr5_1:10665314-10665333 Msa0717090:CDS 35.0%
TGTTTGGTATAATTAGCGGT+TGG - chr5_1:10665318-10665337 Msa0717090:CDS 35.0%
! TTTCCTCTCAATTTTACCAC+TGG + chr5_1:10665421-10665440 None:intergenic 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr5_1:10665580-10665599 Msa0717090:intron 35.0%
ACCTAGGAAAACCATTAGAA+GGG - chr5_1:10665631-10665650 Msa0717090:intron 35.0%
AACCATTAGAAGGGATTTAG+AGG - chr5_1:10665640-10665659 Msa0717090:intron 35.0%
AATGTCATTCTGTGAGCTTA+TGG + chr5_1:10665776-10665795 None:intergenic 35.0%
! TGTTTTCGTAAGCTCTACTA+AGG + chr5_1:10665810-10665829 None:intergenic 35.0%
GTTTGTCATAAGCTATCTTG+AGG + chr5_1:10665873-10665892 None:intergenic 35.0%
TGATATATTCGACCAGTTGA+AGG + chr5_1:10666079-10666098 None:intergenic 35.0%
CGAATATATCATGAGACCTA+TGG - chr5_1:10666088-10666107 Msa0717090:intron 35.0%
AACGTTCATTTGACATCCAT+AGG + chr5_1:10666107-10666126 None:intergenic 35.0%
CATCCCAAAACAACTACTTT+CGG + chr5_1:10666343-10666362 None:intergenic 35.0%
!!! AGTAGTTGTTTTGGGATGTA+TGG - chr5_1:10666345-10666364 Msa0717090:intron 35.0%
GATACTCGATTCAGACAAAA+TGG - chr5_1:10666387-10666406 Msa0717090:intron 35.0%
TGTATTGTACCTTTCACTAG+AGG - chr5_1:10666607-10666626 Msa0717090:intron 35.0%
! AGGATTTTCCAGCATATCAA+AGG - chr5_1:10666795-10666814 Msa0717090:intron 35.0%
! CTTAAGGTTTTCTGATCTGT+TGG - chr5_1:10666831-10666850 Msa0717090:CDS 35.0%
ATACATTTACCTGCACAATC+AGG - chr5_1:10666970-10666989 Msa0717090:intron 35.0%
! TCGAAGTATTATTCCAGATG+TGG - chr5_1:10667065-10667084 Msa0717090:intron 35.0%
CACAAATGAAATCACTGCTT+AGG + chr5_1:10667092-10667111 None:intergenic 35.0%
CTAAGCAGTGATTTCATTTG+TGG - chr5_1:10667090-10667109 Msa0717090:intron 35.0%
ACAAAGAAATAATGTCGGAG+AGG + chr5_1:10667460-10667479 None:intergenic 35.0%
CTTATAGAAGGTGGAGTAAA+AGG + chr5_1:10667548-10667567 None:intergenic 35.0%
! CTTTTACTCCACCTTCTATA+AGG - chr5_1:10667546-10667565 Msa0717090:intron 35.0%
!! TTAGTTCTGCTGAAGAAGAT+GGG + chr5_1:10667652-10667671 None:intergenic 35.0%
!! TTTAGTTCTGCTGAAGAAGA+TGG + chr5_1:10667653-10667672 None:intergenic 35.0%
CTTCAGCAGAACTAAACAAA+TGG - chr5_1:10667657-10667676 Msa0717090:intron 35.0%
CACTAAAAAATCATGGTGCA+TGG + chr5_1:10668168-10668187 None:intergenic 35.0%
GTGAATTTCGAGACAAAGAT+TGG - chr5_1:10668194-10668213 Msa0717090:intron 35.0%
AATTTCGAGACAAAGATTGG+AGG - chr5_1:10668197-10668216 Msa0717090:intron 35.0%
ATTTCGAGACAAAGATTGGA+GGG - chr5_1:10668198-10668217 Msa0717090:intron 35.0%
! GCTTGTATAACCCTTTTAGA+TGG - chr5_1:10668592-10668611 Msa0717090:intron 35.0%
! TCTTTTCTGATGACAATTGG+AGG + chr5_1:10668702-10668721 None:intergenic 35.0%
TTGCTGAATGATACACTTTC+TGG + chr5_1:10668727-10668746 None:intergenic 35.0%
GTAGTATCTTAGGTAGAAAC+AGG - chr5_1:10668855-10668874 Msa0717090:intron 35.0%
TGGAGAAGAATAAAACATGG+GGG - chr5_1:10668900-10668919 Msa0717090:intron 35.0%
GGGATAATTACTTTACCTGA+AGG - chr5_1:10668920-10668939 Msa0717090:intron 35.0%
CTCTAAATAATCGATGCCAT+AGG + chr5_1:10669041-10669060 None:intergenic 35.0%
TTATCTCTTGCTGCCAATTA+TGG - chr5_1:10669101-10669120 Msa0717090:intron 35.0%
GTGAAGAACAAGTTTCTACA+TGG - chr5_1:10669140-10669159 Msa0717090:intron 35.0%
GAAGAACAAGTTTCTACATG+GGG - chr5_1:10669142-10669161 Msa0717090:intron 35.0%
ACTAAGGTTATGACAACCTT+AGG - chr5_1:10669290-10669309 Msa0717090:intron 35.0%
TTAAAACACTCAACTTCAGG+AGG - chr5_1:10669347-10669366 Msa0717090:intron 35.0%
TGACGACATTATTAGTGTAG+TGG - chr5_1:10669372-10669391 Msa0717090:intron 35.0%
! GACATTATTAGTGTAGTGGA+TGG - chr5_1:10669376-10669395 Msa0717090:intron 35.0%
! TTTGACTCGAAATGATTGGA+AGG - chr5_1:10669405-10669424 Msa0717090:intron 35.0%
TTTGCTCAAGGAAACAAGTA+AGG - chr5_1:10669563-10669582 Msa0717090:intron 35.0%
AAACCCATAAGTTCACACTT+AGG - chr5_1:10669594-10669613 Msa0717090:intron 35.0%
AACCCATAAGTTCACACTTA+GGG - chr5_1:10669595-10669614 Msa0717090:intron 35.0%
CATAGGTTTGAGCCTTAAAA+CGG - chr5_1:10669619-10669638 Msa0717090:intron 35.0%
ATAGGTTTGAGCCTTAAAAC+GGG - chr5_1:10669620-10669639 Msa0717090:intron 35.0%
TGGATAAGGAGATGTATCAA+CGG - chr5_1:10669666-10669685 Msa0717090:intron 35.0%
GTTGGTTGTAAGTTTGGTTA+GGG - chr5_1:10669688-10669707 Msa0717090:intron 35.0%
TGTCTTACACTAAAGTTCCT+TGG - chr5_1:10669793-10669812 Msa0717090:intron 35.0%
AGGGAACTATAGTCAACATT+AGG + chr5_1:10670044-10670063 None:intergenic 35.0%
ATGATGTATACCTTGTGTCA+TGG + chr5_1:10670091-10670110 None:intergenic 35.0%
TGAAGTTCTATTGTGATAGC+AGG - chr5_1:10670165-10670184 Msa0717090:CDS 35.0%
TATGAGAAAATGGTGATTGC+TGG + chr5_1:10670191-10670210 None:intergenic 35.0%
!! ACTCTGTACATGGTTTTACA+AGG - chr5_1:10670294-10670313 Msa0717090:CDS 35.0%
CAATGGATCTAAACTACTAG+GGG + chr5_1:10670479-10670498 None:intergenic 35.0%
ATGCCTGATGCAATTTACAA+GGG + chr5_1:10670565-10670584 None:intergenic 35.0%
AATGCCTGATGCAATTTACA+AGG + chr5_1:10670566-10670585 None:intergenic 35.0%
TTGTGTGAGATGCCAATAAA+TGG - chr5_1:10670602-10670621 Msa0717090:CDS 35.0%
ACATGTATGCAGAATACTTG+TGG - chr5_1:10670736-10670755 Msa0717090:CDS 35.0%
AGGCCAAACTATAAGTTTAG+AGG - chr5_1:10670825-10670844 Msa0717090:intron 35.0%
! TTTTCACTACTAGGTAGAGT+TGG + chr5_1:10670921-10670940 None:intergenic 35.0%
CTACCTAGTAGTGAAAATCT+TGG - chr5_1:10670924-10670943 Msa0717090:intron 35.0%
! CAACCAAGATTTTCACTACT+AGG + chr5_1:10670930-10670949 None:intergenic 35.0%
ATGTAGAAGATGTAAGCAGA+TGG + chr5_1:10670970-10670989 None:intergenic 35.0%
! GTTTCTTTTGTGGTTGAAAG+AGG - chr5_1:10671057-10671076 Msa0717090:intron 35.0%
! GCAATTCTAACAGGTTTTTG+TGG - chr5_1:10671329-10671348 Msa0717090:intron 35.0%
! AACAGGTTTTTGTGGAGAAA+CGG - chr5_1:10671337-10671356 Msa0717090:intron 35.0%
ACATGTTTGCTTATAGCATG+AGG - chr5_1:10671417-10671436 Msa0717090:intron 35.0%
CATGTTTGCTTATAGCATGA+GGG - chr5_1:10671418-10671437 Msa0717090:intron 35.0%
ATCATCGACATAGTTTCTGT+GGG + chr5_1:10671456-10671475 None:intergenic 35.0%
ACACAGCTTGTATTAGTTGA+AGG - chr5_1:10671569-10671588 Msa0717090:intron 35.0%
!! GTATCTGGAGCTCTTTTATT+GGG + chr5_1:10671596-10671615 None:intergenic 35.0%
!! AGTATCTGGAGCTCTTTTAT+TGG + chr5_1:10671597-10671616 None:intergenic 35.0%
TTGCCAATTAGTTCAGTATC+TGG + chr5_1:10671611-10671630 None:intergenic 35.0%
GATTGACAAATATTACCCGA+TGG + chr5_1:10671646-10671665 None:intergenic 35.0%
TAATACAAAGCGAAATCCTG+TGG - chr5_1:10671691-10671710 Msa0717090:intron 35.0%
TCATCGTAATTTACCTCTTG+CGG - chr5_1:10671901-10671920 Msa0717090:intron 35.0%
AAAACACTGCAACTATGCAA+TGG - chr5_1:10671950-10671969 Msa0717090:intron 35.0%
! TATGAAGTTTTCCGCGAAAA+TGG - chr5_1:10671981-10672000 Msa0717090:intron 35.0%
ACATCTAAACCAAATAGCCT+AGG - chr5_1:10672066-10672085 Msa0717090:CDS 35.0%
CATCTAAACCAAATAGCCTA+GGG - chr5_1:10672067-10672086 Msa0717090:CDS 35.0%
ATCTAAACCAAATAGCCTAG+GGG - chr5_1:10672068-10672087 Msa0717090:CDS 35.0%
AATAGTACACCATGGTTCTT+AGG - chr5_1:10672200-10672219 Msa0717090:five_prime_UTR 35.0%
AGACATAACATAGGAACAAG+TGG + chr5_1:10672287-10672306 None:intergenic 35.0%
! TTCTGGAAACGTTGATGAGA+GGG + chr5_1:10664822-10664841 None:intergenic 40.0%
TTTGTTGGAAAGCGATGAGA+AGG + chr5_1:10664845-10664864 None:intergenic 40.0%
TTACTGGGGCTGTTGAAATT+GGG + chr5_1:10664920-10664939 None:intergenic 40.0%
ATGCCAGTGGTAAAATTGAG+AGG - chr5_1:10665415-10665434 Msa0717090:CDS 40.0%
TCTTCTTACAACGGCATCTA+CGG + chr5_1:10665567-10665586 None:intergenic 40.0%
AGTCAAGTTAGAAGAGGTAG+AGG - chr5_1:10665605-10665624 Msa0717090:intron 40.0%
GACCTAGGAAAACCATTAGA+AGG - chr5_1:10665630-10665649 Msa0717090:intron 40.0%
! TCCCTTCTAATGGTTTTCCT+AGG + chr5_1:10665635-10665654 None:intergenic 40.0%
GACCTCTAAATCCCTTCTAA+TGG + chr5_1:10665645-10665664 None:intergenic 40.0%
GGATTTAGAGGTCAATGAGT+TGG - chr5_1:10665652-10665671 Msa0717090:intron 40.0%
ATAAGCTATCTTGAGGAGCT+TGG + chr5_1:10665866-10665885 None:intergenic 40.0%
! GGCAGAGGCTTAATTACTTT+TGG - chr5_1:10666257-10666276 Msa0717090:intron 40.0%
! TCCTCCGAAAGTAGTTGTTT+TGG - chr5_1:10666336-10666355 Msa0717090:intron 40.0%
!! CCTCCGAAAGTAGTTGTTTT+GGG - chr5_1:10666337-10666356 Msa0717090:intron 40.0%
ATGTATGGCTGAGAGGTTAA+AGG - chr5_1:10666360-10666379 Msa0717090:intron 40.0%
TTACTGGAAGAGGTTGAGTA+TGG - chr5_1:10666454-10666473 Msa0717090:intron 40.0%
TAACACTCTTCTTTCGCTTG+AGG - chr5_1:10666489-10666508 Msa0717090:intron 40.0%
!! TGCTTTTGTTTCGGTGATGA+GGG - chr5_1:10666561-10666580 Msa0717090:intron 40.0%
TCTCTCACTATTGAATCCAC+AGG + chr5_1:10666649-10666668 None:intergenic 40.0%
TGTGGATTCAATAGTGAGAG+AGG - chr5_1:10666648-10666667 Msa0717090:intron 40.0%
GATTCAATAGTGAGAGAGGT+GGG - chr5_1:10666652-10666671 Msa0717090:intron 40.0%
GTGAAAGAAGTAACGCTTCT+TGG - chr5_1:10666694-10666713 Msa0717090:intron 40.0%
CATTGTAGCTGTTCACATTC+TGG + chr5_1:10666720-10666739 None:intergenic 40.0%
TACAATGATGCATCTGTGGT+TGG - chr5_1:10666733-10666752 Msa0717090:intron 40.0%
TCCAACTGGAAACTTAGTGA+AGG - chr5_1:10666775-10666794 Msa0717090:intron 40.0%
TCCTTCACTAAGTTTCCAGT+TGG + chr5_1:10666779-10666798 None:intergenic 40.0%
ATATCAAAGGTCAGAACCAC+AGG - chr5_1:10666808-10666827 Msa0717090:intron 40.0%
ATCAGAAAACCTTAAGCCTG+TGG + chr5_1:10666827-10666846 None:intergenic 40.0%
!! TCTGGATAATCTTTAGGGTG+TGG + chr5_1:10666904-10666923 None:intergenic 40.0%
GCAAAATGCTTGAGAGAATG+AGG - chr5_1:10666998-10667017 Msa0717090:intron 40.0%
!! ACATTTACTCGGTGTTTGGT+TGG - chr5_1:10667226-10667245 Msa0717090:intron 40.0%
!! CATTTACTCGGTGTTTGGTT+GGG - chr5_1:10667227-10667246 Msa0717090:intron 40.0%
!! ATTTACTCGGTGTTTGGTTG+GGG - chr5_1:10667228-10667247 Msa0717090:intron 40.0%
CCAATATCCCTTATAGAAGG+TGG + chr5_1:10667557-10667576 None:intergenic 40.0%
CCACCTTCTATAAGGGATAT+TGG - chr5_1:10667554-10667573 Msa0717090:intron 40.0%
TTCTCATCTCTGTGTCAAGA+GGG + chr5_1:10667692-10667711 None:intergenic 40.0%
ATTCTCATCTCTGTGTCAAG+AGG + chr5_1:10667693-10667712 None:intergenic 40.0%
AATCTAAACTACTTGGGGAG+TGG + chr5_1:10667775-10667794 None:intergenic 40.0%
CTCAAGCACAATCAGAACAA+TGG - chr5_1:10667928-10667947 Msa0717090:intron 40.0%
AGAACAATGGTCTTCTTGCT+TGG - chr5_1:10667941-10667960 Msa0717090:intron 40.0%
GTTGTATTAAATCACCTGGC+TGG - chr5_1:10668005-10668024 Msa0717090:intron 40.0%
AAACAAAGTCTGACAGCACA+AGG + chr5_1:10668033-10668052 None:intergenic 40.0%
!!! TGACGTGTTTTGGAACTTGA+AGG + chr5_1:10668107-10668126 None:intergenic 40.0%
TTTCGAGACAAAGATTGGAG+GGG - chr5_1:10668199-10668218 Msa0717090:intron 40.0%
TTCAGTGTGGTTGACAACTT+TGG + chr5_1:10668296-10668315 None:intergenic 40.0%
ATGGACCCCAAACATTAGTA+TGG + chr5_1:10668541-10668560 None:intergenic 40.0%
GAGACATTCAGAATCGAAGA+TGG + chr5_1:10668560-10668579 None:intergenic 40.0%
TCTTCGATTCTGAATGTCTC+TGG - chr5_1:10668560-10668579 Msa0717090:intron 40.0%
CTTCGATTCTGAATGTCTCT+GGG - chr5_1:10668561-10668580 Msa0717090:intron 40.0%
TTCGATTCTGAATGTCTCTG+GGG - chr5_1:10668562-10668581 Msa0717090:intron 40.0%
CCGAATACAGCCATCTAAAA+GGG + chr5_1:10668605-10668624 None:intergenic 40.0%
! CCCTTTTAGATGGCTGTATT+CGG - chr5_1:10668602-10668621 Msa0717090:intron 40.0%
! CCTTTTAGATGGCTGTATTC+GGG - chr5_1:10668603-10668622 Msa0717090:intron 40.0%
ACTTCAGCGTAAATCTGAAG+TGG - chr5_1:10668642-10668661 Msa0717090:intron 40.0%
! CTTCAGCGTAAATCTGAAGT+GGG - chr5_1:10668643-10668662 Msa0717090:intron 40.0%
ATCTCCAACAGTTTGAGAAG+AGG + chr5_1:10668671-10668690 None:intergenic 40.0%
TCAACTGAGGTAGTTTGAGA+GGG + chr5_1:10668756-10668775 None:intergenic 40.0%
TTCAACTGAGGTAGTTTGAG+AGG + chr5_1:10668757-10668776 None:intergenic 40.0%
TGGGAACGAAGTTTAGGTAT+AGG + chr5_1:10668821-10668840 None:intergenic 40.0%
CATTACTGGGAACGAAGTTT+AGG + chr5_1:10668827-10668846 None:intergenic 40.0%
!! CGTTCCCAGTAATGTTTTTG+AGG - chr5_1:10668833-10668852 Msa0717090:intron 40.0%
TCTTAGGTAGAAACAGGTCA+TGG - chr5_1:10668861-10668880 Msa0717090:intron 40.0%
CTTAGGTAGAAACAGGTCAT+GGG - chr5_1:10668862-10668881 Msa0717090:intron 40.0%
CATAGGTTGTGTGAAACCTT+TGG + chr5_1:10669024-10669043 None:intergenic 40.0%
CAAAGGTTTCACACAACCTA+TGG - chr5_1:10669022-10669041 Msa0717090:intron 40.0%
TGAAACAATCACCAAGAGCA+TGG - chr5_1:10669255-10669274 Msa0717090:intron 40.0%
! ATGGTTTGGAAGGTTCACTA+AGG - chr5_1:10669274-10669293 Msa0717090:intron 40.0%
!!! CGTTTTAAGGCTCAAACCTA+TGG + chr5_1:10669621-10669640 None:intergenic 40.0%
! CATCTGCATTACCCGTTTTA+AGG + chr5_1:10669634-10669653 None:intergenic 40.0%
AAAACGGGTAATGCAGATGA+AGG - chr5_1:10669635-10669654 Msa0717090:intron 40.0%
TAAGGAGATGTATCAACGGT+TGG - chr5_1:10669670-10669689 Msa0717090:intron 40.0%
! TCAACGGTTGGTTGTAAGTT+TGG - chr5_1:10669682-10669701 Msa0717090:intron 40.0%
! GGTTGGTTGTAAGTTTGGTT+AGG - chr5_1:10669687-10669706 Msa0717090:intron 40.0%
GACTAAGGATGCGTTTGTTT+GGG + chr5_1:10669962-10669981 None:intergenic 40.0%
TGACTAAGGATGCGTTTGTT+TGG + chr5_1:10669963-10669982 None:intergenic 40.0%
GACTGTGCACAAATTGACTA+AGG + chr5_1:10669977-10669996 None:intergenic 40.0%
AACTCAACTTCAGCACTAGA+GGG + chr5_1:10670063-10670082 None:intergenic 40.0%
! CTTTTGGACATTCTCACCAA+AGG - chr5_1:10670321-10670340 Msa0717090:CDS 40.0%
TAGTACTCATTGTCCAAGCT+CGG - chr5_1:10670370-10670389 Msa0717090:CDS 40.0%
AGAACGAGCTCAATATTCTC+AGG - chr5_1:10670515-10670534 Msa0717090:CDS 40.0%
TCTCCCTTGTAAATTGCATC+AGG - chr5_1:10670559-10670578 Msa0717090:CDS 40.0%
GTGAATTAGAGTAGTCCCTA+TGG - chr5_1:10670669-10670688 Msa0717090:CDS 40.0%
! GTCTAGCCTACTCATTTTAC+CGG + chr5_1:10670767-10670786 None:intergenic 40.0%
TAAAATGAGTAGGCTAGACG+AGG - chr5_1:10670768-10670787 Msa0717090:intron 40.0%
AAAATGAGTAGGCTAGACGA+GGG - chr5_1:10670769-10670788 Msa0717090:intron 40.0%
TAGACGGAGACCAAAGAAAT+AGG - chr5_1:10670805-10670824 Msa0717090:intron 40.0%
! TTTTGGGCCTAATACATGTC+AGG - chr5_1:10670860-10670879 Msa0717090:intron 40.0%
CTAGAGTCCTGACATGTATT+AGG + chr5_1:10670870-10670889 None:intergenic 40.0%
TGTCAGGACTCTAGACTTTA+TGG - chr5_1:10670876-10670895 Msa0717090:intron 40.0%
! TTTTGTGGTTGAAAGAGGTC+TGG - chr5_1:10671062-10671081 Msa0717090:intron 40.0%
TTTGTGGTTGAAAGAGGTCT+GGG - chr5_1:10671063-10671082 Msa0717090:intron 40.0%
CATCATCGACATAGTTTCTG+TGG + chr5_1:10671457-10671476 None:intergenic 40.0%
GCTCCAGATACTGAACTAAT+TGG - chr5_1:10671605-10671624 Msa0717090:intron 40.0%
ACTAATTGGCAAGAGTGACA+AGG - chr5_1:10671619-10671638 Msa0717090:intron 40.0%
CTAATTGGCAAGAGTGACAA+GGG - chr5_1:10671620-10671639 Msa0717090:intron 40.0%
TGCATTGCAGGTTGTCAATA+AGG + chr5_1:10672046-10672065 None:intergenic 40.0%
TGGTTTAGATGTTGCATTGC+AGG + chr5_1:10672058-10672077 None:intergenic 40.0%
AGCACACGGAAGATTTAATG+TGG - chr5_1:10672145-10672164 Msa0717090:exon 40.0%
AAGTGGCCAGATAGATAACT+AGG + chr5_1:10672270-10672289 None:intergenic 40.0%
!! GCAGCTTTGAGACATAACAT+AGG + chr5_1:10672296-10672315 None:intergenic 40.0%
TATGTCTCAAAGCTGCATGA+TGG - chr5_1:10672300-10672319 Msa0717090:five_prime_UTR 40.0%
! TGAGCAATCCAATGACTTGG+AGG - chr5_1:10664516-10664535 Msa0717090:three_prime_UTR 45.0%
! GAGCAATCCAATGACTTGGA+GGG - chr5_1:10664517-10664536 Msa0717090:three_prime_UTR 45.0%
GTGATTACCCTCCAAGTCAT+TGG + chr5_1:10664527-10664546 None:intergenic 45.0%
! TACTGTTATCGGGCTGGATA+GGG + chr5_1:10664600-10664619 None:intergenic 45.0%
! TTACTGTTATCGGGCTGGAT+AGG + chr5_1:10664601-10664620 None:intergenic 45.0%
! GTTTGTTACTGTTATCGGGC+TGG + chr5_1:10664606-10664625 None:intergenic 45.0%
!! GTGAGGTTGGTTGATGATAG+AGG + chr5_1:10664695-10664714 None:intergenic 45.0%
! ATGAGGATGGTTTGTGAGGA+GGG + chr5_1:10664792-10664811 None:intergenic 45.0%
! GAAGATGAGGATGGTTTGTG+AGG + chr5_1:10664796-10664815 None:intergenic 45.0%
!! GTTCTGGAAACGTTGATGAG+AGG + chr5_1:10664823-10664842 None:intergenic 45.0%
!!! GGAAGGGTTTTCAGGTTTGT+TGG + chr5_1:10664860-10664879 None:intergenic 45.0%
CTTACTGGGGCTGTTGAAAT+TGG + chr5_1:10664921-10664940 None:intergenic 45.0%
GCATCTACGGGTCTTCTTTA+TGG + chr5_1:10665554-10665573 None:intergenic 45.0%
CTTCTTACAACGGCATCTAC+GGG + chr5_1:10665566-10665585 None:intergenic 45.0%
GAGGAGAGTCAAGTTAGAAG+AGG - chr5_1:10665599-10665618 Msa0717090:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr5_1:10665731-10665750 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr5_1:10665732-10665751 None:intergenic 45.0%
! GGATAAGGCTTGGTTGTTGT+TGG - chr5_1:10665740-10665759 Msa0717090:intron 45.0%
GATACTGAAGCTCCTTCAAC+TGG - chr5_1:10666064-10666083 Msa0717090:intron 45.0%
! CAGAAATGAAAGTGTGGCAG+AGG - chr5_1:10666242-10666261 Msa0717090:intron 45.0%
TGGAAAGCTAATGTCGCTAC+TGG - chr5_1:10666295-10666314 Msa0717090:intron 45.0%
AAGCTAATGTCGCTACTGGA+AGG - chr5_1:10666299-10666318 Msa0717090:intron 45.0%
AACTACTTTCGGAGGACGTA+GGG + chr5_1:10666332-10666351 None:intergenic 45.0%
CCCAAAACAACTACTTTCGG+AGG + chr5_1:10666340-10666359 None:intergenic 45.0%
!!! TTTTGGGATGTATGGCTGAG+AGG - chr5_1:10666353-10666372 Msa0717090:intron 45.0%
TATGTGGGCCTGATGCTTAT+AGG - chr5_1:10666419-10666438 Msa0717090:intron 45.0%
ATGTGGGCCTGATGCTTATA+GGG - chr5_1:10666420-10666439 Msa0717090:intron 45.0%
GGCAAATCCCTATAAGCATC+AGG + chr5_1:10666430-10666449 None:intergenic 45.0%
TAGGGATTTGCCACGATTAC+TGG - chr5_1:10666438-10666457 Msa0717090:intron 45.0%
TTTGCCACGATTACTGGAAG+AGG - chr5_1:10666444-10666463 Msa0717090:intron 45.0%
TCAACCTCTTCCAGTAATCG+TGG + chr5_1:10666451-10666470 None:intergenic 45.0%
GAGGTTGAGTATGGTCAGAA+AGG - chr5_1:10666463-10666482 Msa0717090:intron 45.0%
!! GTGCTTTTGTTTCGGTGATG+AGG - chr5_1:10666560-10666579 Msa0717090:intron 45.0%
!! GCTTTTGTTTCGGTGATGAG+GGG - chr5_1:10666562-10666581 Msa0717090:intron 45.0%
GGATTCAATAGTGAGAGAGG+TGG - chr5_1:10666651-10666670 Msa0717090:intron 45.0%
CAGCTACAATGATGCATCTG+TGG - chr5_1:10666729-10666748 Msa0717090:intron 45.0%
TGCATCTGTGGTTGGAAAAG+AGG - chr5_1:10666741-10666760 Msa0717090:intron 45.0%
TTGGAAAAGAGGCTGAAGCA+GGG - chr5_1:10666752-10666771 Msa0717090:intron 45.0%
! GGTTCTGACCTTTGATATGC+TGG + chr5_1:10666806-10666825 None:intergenic 45.0%
! GTGAATCTGAAACGCATCTC+GGG + chr5_1:10666877-10666896 None:intergenic 45.0%
! CGTGAATCTGAAACGCATCT+CGG + chr5_1:10666878-10666897 None:intergenic 45.0%
! TTGCTACTTCCTGATTGTGC+AGG + chr5_1:10666982-10667001 None:intergenic 45.0%
!! TTTACTCGGTGTTTGGTTGG+GGG - chr5_1:10667229-10667248 Msa0717090:intron 45.0%
TCTTCAAATTCCCGCCATAG+TGG + chr5_1:10667310-10667329 None:intergenic 45.0%
TTCTGCTGAAGAAGATGGGA+GGG + chr5_1:10667648-10667667 None:intergenic 45.0%
TCTCTGTGTCAAGAGGGAAA+AGG + chr5_1:10667686-10667705 None:intergenic 45.0%
! ACAAGGTAGGTGACGTGTTT+TGG + chr5_1:10668117-10668136 None:intergenic 45.0%
CCCGAATACAGCCATCTAAA+AGG + chr5_1:10668606-10668625 None:intergenic 45.0%
CAACTGAGGTAGTTTGAGAG+GGG + chr5_1:10668755-10668774 None:intergenic 45.0%
AAACAGGTCATGGGTAGAGT+TGG - chr5_1:10668871-10668890 Msa0717090:intron 45.0%
AGCGGTACAAAGTAAGCCAA+AGG - chr5_1:10669005-10669024 Msa0717090:intron 45.0%
CTCTTGCTGCCAATTATGGT+TGG - chr5_1:10669105-10669124 Msa0717090:intron 45.0%
GTTTCTACATGGGGAACTAG+AGG - chr5_1:10669151-10669170 Msa0717090:intron 45.0%
! CAATCACCAAGAGCATGGTT+TGG - chr5_1:10669260-10669279 Msa0717090:intron 45.0%
AACCTTCCAAACCATGCTCT+TGG + chr5_1:10669269-10669288 None:intergenic 45.0%
GGCCCTAAGTGTGAACTTAT+GGG + chr5_1:10669600-10669619 None:intergenic 45.0%
TGGCCCTAAGTGTGAACTTA+TGG + chr5_1:10669601-10669620 None:intergenic 45.0%
AAGTTCACACTTAGGGCCAT+AGG - chr5_1:10669602-10669621 Msa0717090:intron 45.0%
TGAAGGTTCAGCAGTGGATA+AGG - chr5_1:10669652-10669671 Msa0717090:intron 45.0%
! TGGTTAGGGTGCGTTTGTTT+TGG - chr5_1:10669702-10669721 Msa0717090:intron 45.0%
GAACTCAACTTCAGCACTAG+AGG + chr5_1:10670064-10670083 None:intergenic 45.0%
GTATACCTTGTGTCATGGCT+CGG + chr5_1:10670086-10670105 None:intergenic 45.0%
GTGGACAGATGTTATACCGA+AGG - chr5_1:10670246-10670265 Msa0717090:CDS 45.0%
AACTCAACTGCTCGATCCTT+TGG + chr5_1:10670340-10670359 None:intergenic 45.0%
AATACACTTGAGGAGGAGTG+TGG - chr5_1:10670400-10670419 Msa0717090:CDS 45.0%
! ATACACTTGAGGAGGAGTGT+GGG - chr5_1:10670401-10670420 Msa0717090:CDS 45.0%
! CAGAATACTTGTGGAAGCAC+CGG - chr5_1:10670745-10670764 Msa0717090:intron 45.0%
!! GAAGCACCGGTAAAATGAGT+AGG - chr5_1:10670758-10670777 Msa0717090:intron 45.0%
TAGACGAGGGATAGTCCAAT+TGG - chr5_1:10670782-10670801 Msa0717090:intron 45.0%
GGGATAGTCCAATTGGTAGA+CGG - chr5_1:10670789-10670808 Msa0717090:intron 45.0%
TTTGGTCTCCGTCTACCAAT+TGG + chr5_1:10670800-10670819 None:intergenic 45.0%
ACTAGGTAGAGTTGGACACA+TGG + chr5_1:10670913-10670932 None:intergenic 45.0%
AGATGTAAGCAGATGGTCCT+TGG + chr5_1:10670963-10670982 None:intergenic 45.0%
GTTGAAAGAGGTCTGGGAAA+GGG - chr5_1:10671069-10671088 Msa0717090:intron 45.0%
! AGGTTTTTGTGGAGAAACGG+AGG - chr5_1:10671340-10671359 Msa0717090:intron 45.0%
! TTTTTGTGGAGAAACGGAGG+AGG - chr5_1:10671343-10671362 Msa0717090:intron 45.0%
CTATGTCGATGATGTTCCTG+AGG - chr5_1:10671463-10671482 Msa0717090:intron 45.0%
TTCCTGAGGAAACTAAGCAG+AGG - chr5_1:10671477-10671496 Msa0717090:intron 45.0%
AACACTTTCCTGTGCTCTCA+CGG + chr5_1:10671529-10671548 None:intergenic 45.0%
!! AGGAAAGTGTTACGACGAAC+AGG - chr5_1:10671538-10671557 Msa0717090:intron 45.0%
AAGTGTTACGACGAACAGGT+TGG - chr5_1:10671542-10671561 Msa0717090:intron 45.0%
TCAATCTGCCAATCTCAGAC+AGG - chr5_1:10671660-10671679 Msa0717090:intron 45.0%
CAATCTGCCAATCTCAGACA+GGG - chr5_1:10671661-10671680 Msa0717090:intron 45.0%
! ACATCTTCCCTGTCTGAGAT+TGG + chr5_1:10671671-10671690 None:intergenic 45.0%
ACAAAGCGAAATCCTGTGGT+TGG - chr5_1:10671695-10671714 Msa0717090:intron 45.0%
TCAACATAATCGCCAACCAC+AGG + chr5_1:10671710-10671729 None:intergenic 45.0%
!! TCTACAAGGGCATCACTCTT+CGG - chr5_1:10671746-10671765 Msa0717090:intron 45.0%
TAAACCAAATAGCCTAGGGG+AGG - chr5_1:10672071-10672090 Msa0717090:CDS 45.0%
CATCAGACTCCTAAGAACCA+TGG + chr5_1:10672212-10672231 None:intergenic 45.0%
!! TTAAGGCGTTGAGCAGTGTG+AGG + chr5_1:10664712-10664731 None:intergenic 50.0%
! GATGAGGATGGTTTGTGAGG+AGG + chr5_1:10664793-10664812 None:intergenic 50.0%
GGAAAGCGATGAGAAGGTTC+TGG + chr5_1:10664839-10664858 None:intergenic 50.0%
AAGCTTGAGCGATGAAGTGG+CGG + chr5_1:10664885-10664904 None:intergenic 50.0%
GAGAAGCTTGAGCGATGAAG+TGG + chr5_1:10664888-10664907 None:intergenic 50.0%
GGGCTGTTGAAATTGGGAAG+CGG + chr5_1:10664914-10664933 None:intergenic 50.0%
GAAGAGGTAGAGGAAGACCT+AGG - chr5_1:10665615-10665634 Msa0717090:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr5_1:10665727-10665746 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr5_1:10665733-10665752 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr5_1:10665730-10665749 Msa0717090:intron 50.0%
GAGCTTCAGTATCCGCTACA+AGG + chr5_1:10666057-10666076 None:intergenic 50.0%
CAACTACTTTCGGAGGACGT+AGG + chr5_1:10666333-10666352 None:intergenic 50.0%
! GAATTCTGGGAGATCCGAAC+TGG + chr5_1:10666535-10666554 None:intergenic 50.0%
!! GTGGGAGAGCTTTGGAAAGA+GGG - chr5_1:10666670-10666689 Msa0717090:intron 50.0%
GTTGGAAAAGAGGCTGAAGC+AGG - chr5_1:10666751-10666770 Msa0717090:intron 50.0%
AGGTCAGAACCACAGGCTTA+AGG - chr5_1:10666815-10666834 Msa0717090:intron 50.0%
ATGCTTGAGAGAATGAGGCG+AGG - chr5_1:10667003-10667022 Msa0717090:intron 50.0%
!! TTACTCGGTGTTTGGTTGGG+GGG - chr5_1:10667230-10667249 Msa0717090:intron 50.0%
TCTGCTGAAGAAGATGGGAG+GGG + chr5_1:10667647-10667666 None:intergenic 50.0%
GTTCTGCTGAAGAAGATGGG+AGG + chr5_1:10667649-10667668 None:intergenic 50.0%
GGCACCTCTTCTCAAACTGT+TGG - chr5_1:10668664-10668683 Msa0717090:intron 50.0%
! ATGGGTAGAGTTGGAGGCAT+TGG - chr5_1:10668880-10668899 Msa0717090:intron 50.0%
TCTACATGGGGAACTAGAGG+AGG - chr5_1:10669154-10669173 Msa0717090:intron 50.0%
CTACATGGGGAACTAGAGGA+GGG - chr5_1:10669155-10669174 Msa0717090:intron 50.0%
! CACCAAGAGCATGGTTTGGA+AGG - chr5_1:10669264-10669283 Msa0717090:intron 50.0%
TGCAGATGAAGGTTCAGCAG+TGG - chr5_1:10669646-10669665 Msa0717090:intron 50.0%
ACCGAAGGAAAACTCGACTC+CGG - chr5_1:10670261-10670280 Msa0717090:CDS 50.0%
! ACCGGAGTCGAGTTTTCCTT+CGG + chr5_1:10670265-10670284 None:intergenic 50.0%
TCATTGTCCAAGCTCGGAGT+GGG - chr5_1:10670376-10670395 Msa0717090:CDS 50.0%
AGTGGGGAATACACTTGAGG+AGG - chr5_1:10670393-10670412 Msa0717090:CDS 50.0%
GTAGAGTTGGACACATGGAC+AGG + chr5_1:10670908-10670927 None:intergenic 50.0%
GGTTGAAAGAGGTCTGGGAA+AGG - chr5_1:10671068-10671087 Msa0717090:intron 50.0%
AAAGAGGTCTGGGAAAGGGT+TGG - chr5_1:10671073-10671092 Msa0717090:intron 50.0%
CTCCTCTGCTTAGTTTCCTC+AGG + chr5_1:10671482-10671501 None:intergenic 50.0%
CTGAGGAAACTAAGCAGAGG+AGG - chr5_1:10671480-10671499 Msa0717090:intron 50.0%
! GCAGACTCGAACCATTTTCG+CGG + chr5_1:10671995-10672014 None:intergenic 50.0%
CAATCCTCCCCTAGGCTATT+TGG + chr5_1:10672078-10672097 None:intergenic 50.0%
AATCACAGCAATCCTCCCCT+AGG + chr5_1:10672086-10672105 None:intergenic 50.0%
! GTGGGCTTTGATGAAGCACA+CGG - chr5_1:10672131-10672150 Msa0717090:exon 50.0%
TGCATCTAGTCTAGGGGTCG+TGG + chr5_1:10664568-10664587 None:intergenic 55.0%
GTGCGGTGCATCTAGTCTAG+GGG + chr5_1:10664574-10664593 None:intergenic 55.0%
CGTGCGGTGCATCTAGTCTA+GGG + chr5_1:10664575-10664594 None:intergenic 55.0%
ACGTGCGGTGCATCTAGTCT+AGG + chr5_1:10664576-10664595 None:intergenic 55.0%
! AGAGGGCGTGAAGATGAGGA+TGG + chr5_1:10664805-10664824 None:intergenic 55.0%
! GATGAGAGGGCGTGAAGATG+AGG + chr5_1:10664809-10664828 None:intergenic 55.0%
! TTGAGCGATGAAGTGGCGGA+GGG + chr5_1:10664881-10664900 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr5_1:10665719-10665738 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5_1:10665718-10665737 Msa0717090:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr5_1:10665719-10665738 Msa0717090:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr5_1:10665725-10665744 Msa0717090:intron 55.0%
CGCTCTCTGCCTCTAGTGAA+AGG + chr5_1:10666619-10666638 None:intergenic 55.0%
TGAGAGAGGTGGGAGAGCTT+TGG - chr5_1:10666662-10666681 Msa0717090:intron 55.0%
!! GGTGGGAGAGCTTTGGAAAG+AGG - chr5_1:10666669-10666688 Msa0717090:intron 55.0%
GAGGCGAGGATATACTCGAG+AGG - chr5_1:10667017-10667036 Msa0717090:intron 55.0%
TCACTGCTTAGGGCCACATC+TGG + chr5_1:10667081-10667100 None:intergenic 55.0%
TAGTGGAGACTGGAGAGGAG+TGG + chr5_1:10667293-10667312 None:intergenic 55.0%
CTCCTCTCCAGTCTCCACTA+TGG - chr5_1:10667293-10667312 Msa0717090:intron 55.0%
CTCTCCAGTCTCCACTATGG+CGG - chr5_1:10667296-10667315 Msa0717090:intron 55.0%
TCTCCAGTCTCCACTATGGC+GGG - chr5_1:10667297-10667316 Msa0717090:intron 55.0%
! ATTCCCGCCATAGTGGAGAC+TGG + chr5_1:10667303-10667322 None:intergenic 55.0%
GAGACAAAGATTGGAGGGGC+AGG - chr5_1:10668203-10668222 Msa0717090:intron 55.0%
ACAAAGATTGGAGGGGCAGG+AGG - chr5_1:10668206-10668225 Msa0717090:intron 55.0%
!! TGAATGTCTCTGGGGCTCAG+TGG - chr5_1:10668570-10668589 Msa0717090:intron 55.0%
CAGGTCATGGGTAGAGTTGG+AGG - chr5_1:10668874-10668893 Msa0717090:intron 55.0%
! AAGCTGACGGGTCGTTTGAG+CGG - chr5_1:10668987-10669006 Msa0717090:intron 55.0%
GAAGTGGATCACCCCAAGAG+AGG - chr5_1:10669508-10669527 Msa0717090:intron 55.0%
GAGTTCCGAGCCATGACACA+AGG - chr5_1:10670078-10670097 Msa0717090:CDS 55.0%
CTCATTGTCCAAGCTCGGAG+TGG - chr5_1:10670375-10670394 Msa0717090:CDS 55.0%
CATTGTCCAAGCTCGGAGTG+GGG - chr5_1:10670377-10670396 Msa0717090:CDS 55.0%
TGTATTCCCCACTCCGAGCT+TGG + chr5_1:10670386-10670405 None:intergenic 55.0%
CGGAGTGGGGAATACACTTG+AGG - chr5_1:10670390-10670409 Msa0717090:CDS 55.0%
! GAGACTTTCCGTGAGAGCAC+AGG - chr5_1:10671518-10671537 Msa0717090:intron 55.0%
GCAAGAGTGACAAGGGCCAT+CGG - chr5_1:10671627-10671646 Msa0717090:intron 55.0%
CAAGAGTGACAAGGGCCATC+GGG - chr5_1:10671628-10671647 Msa0717090:intron 55.0%
GGTTTAGTCAACGCCGCAAG+AGG + chr5_1:10671917-10671936 None:intergenic 55.0%
! GGCGTTGAGCAGTGTGAGGT+TGG + chr5_1:10664708-10664727 None:intergenic 60.0%
! TGGCGGAGGGAAGGGTTTTC+AGG + chr5_1:10664868-10664887 None:intergenic 60.0%
! CGATGAAGTGGCGGAGGGAA+GGG + chr5_1:10664876-10664895 None:intergenic 60.0%
CTTGAGCGATGAAGTGGCGG+AGG + chr5_1:10664882-10664901 None:intergenic 60.0%
CAGAGAGCGATCACGACCTG+TGG - chr5_1:10666630-10666649 Msa0717090:intron 60.0%
AGGCTGAAGCAGGGTCCAAC+TGG - chr5_1:10666761-10666780 Msa0717090:intron 60.0%
! TCGGTGTTTGGTTGGGGGGT+AGG - chr5_1:10667234-10667253 Msa0717090:intron 60.0%
CGGTGTTTGGTTGGGGGGTA+GGG - chr5_1:10667235-10667254 Msa0717090:intron 60.0%
TGTTTGGTTGGGGGGTAGGG+AGG - chr5_1:10667238-10667257 Msa0717090:intron 60.0%
GTTTGGTTGGGGGGTAGGGA+GGG - chr5_1:10667239-10667258 Msa0717090:intron 60.0%
GGAGACTGGAGAGGAGTGGT+GGG + chr5_1:10667289-10667308 None:intergenic 60.0%
TGGAGACTGGAGAGGAGTGG+TGG + chr5_1:10667290-10667309 None:intergenic 60.0%
! CGCCATAGTGGAGACTGGAG+AGG + chr5_1:10667298-10667317 None:intergenic 60.0%
AAGATGGGAGGGGTGGAGGA+GGG + chr5_1:10667637-10667656 None:intergenic 60.0%
GAAGAAGATGGGAGGGGTGG+AGG + chr5_1:10667641-10667660 None:intergenic 60.0%
GCTGAAGAAGATGGGAGGGG+TGG + chr5_1:10667644-10667663 None:intergenic 60.0%
! GCGATGAAGTGGCGGAGGGA+AGG + chr5_1:10664877-10664896 None:intergenic 65.0%
GGGGGTAGGGAGGGAGAATG+AGG - chr5_1:10667248-10667267 Msa0717090:intron 65.0%
GAAGATGGGAGGGGTGGAGG+AGG + chr5_1:10667638-10667657 None:intergenic 65.0%
! GACAGCACAAGGTGCCAGCC+AGG + chr5_1:10668022-10668041 None:intergenic 65.0%
! CGGGCTGGATAGGGCACGTG+CGG + chr5_1:10664591-10664610 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 10664485 10672442 10664485 ID=Msa0717090;Name=Msa0717090
chr5_1 mRNA 10664485 10672442 10664485 ID=Msa0717090-mRNA-1;Parent=Msa0717090;Name=Msa0717090-mRNA-1;_AED=0.03;_eAED=0.03;_QI=294|0|0.5|0.75|1|1|4|598|548
chr5_1 exon 10664485 10665585 10664485 ID=Msa0717090-mRNA-1:exon:4355;Parent=Msa0717090-mRNA-1
chr5_1 exon 10666828 10666869 10666828 ID=Msa0717090-mRNA-1:exon:4354;Parent=Msa0717090-mRNA-1
chr5_1 exon 10669816 10670760 10669816 ID=Msa0717090-mRNA-1:exon:4353;Parent=Msa0717090-mRNA-1
chr5_1 exon 10671992 10672442 10671992 ID=Msa0717090-mRNA-1:exon:4352;Parent=Msa0717090-mRNA-1
chr5_1 five_prime_UTR 10672149 10672442 10672149 ID=Msa0717090-mRNA-1:five_prime_utr;Parent=Msa0717090-mRNA-1
chr5_1 CDS 10671992 10672148 10671992 ID=Msa0717090-mRNA-1:cds;Parent=Msa0717090-mRNA-1
chr5_1 CDS 10669816 10670760 10669816 ID=Msa0717090-mRNA-1:cds;Parent=Msa0717090-mRNA-1
chr5_1 CDS 10666828 10666869 10666828 ID=Msa0717090-mRNA-1:cds;Parent=Msa0717090-mRNA-1
chr5_1 CDS 10665083 10665585 10665083 ID=Msa0717090-mRNA-1:cds;Parent=Msa0717090-mRNA-1
chr5_1 three_prime_UTR 10664485 10665082 10664485 ID=Msa0717090-mRNA-1:three_prime_utr;Parent=Msa0717090-mRNA-1
Gene Sequence

>Msa0717090

ATGCTTTTTTCCCTCCTCACAAACCATCCTCATCTTCACGCCCTCTCATCAACGTTTCCAGAACCTTCTCATCGCTTTCCAACAAACCTGAAAACCCTTCCCTCCGCCACTTCATCGCTCAAGCTTCTCTCACCGCTTCCCAATTTCAACAGCCCCAGCTATAATGAAATTGTGACTGTTCCTGAGAATGCAGAGATAATATTCATCAACACTTGTGCCATAAGAGATAATGCAGAAATGAAAGTGTGGCAGAGGCTTAATTACTTTTGGTTTCTTAAAAGGAATTGGAAAGCTAATGTCGCTACTGGAAGGTCACAATCCCTACGTCCTCCGAAAGTAGTTGTTTTGGGATGTATGGCTGAGAGGTTAAAGGAAAAGATACTCGATTCAGACAAAATGGTTGATGTTGTATGTGGGCCTGATGCTTATAGGGATTTGCCACGATTACTGGAAGAGGTTGAGTATGGTCAGAAAGGAATTAACACTCTTCTTTCGCTTGAGGAGACTTATGCTGATATTAATCCAGTTCGGATCTCCCAGAATTCAATTAGTGCTTTTGTTTCGGTGATGAGGGGATGCAACAATATGTGTTCGTTTTGTATTGTACCTTTCACTAGAGGCAGAGAGCGATCACGACCTGTGGATTCAATAGTGAGAGAGGTGGGAGAGCTTTGGAAAGAGGGTGTGAAAGAAGTAACGCTTCTTGGCCAGAATGTGAACAGCTACAATGATGCATCTGTGGTTGGAAAAGAGGCTGAAGCAGGGTCCAACTGGAAACTTAGTGAAGGATTTTCCAGCATATCAAAGGTCAGAACCACAGGCTTAAGGTTTTCTGATCTGTTGGATCGACTCTCATTAGAATTTCCCGAGATGCGTTTCAGATTCACGTCTCCACACCCTAAAGATTATCCAGATGAACTGCTTTATATTATGCGGGAAAGACATAATATATGCAAATTGATACATTTACCTGCACAATCAGGAAGTAGCAAAATGCTTGAGAGAATGAGGCGAGGATATACTCGAGAGGCTTACTTGAGTCTTGTGCAAAAAATTCGAAGTATTATTCCAGATGTGGCCCTAAGCAGTGATTTCATTTGTGTTCCCTCTAGTGCTGAAGTTGAGTTCCGAGCCATGACACAAGGTTTTTGTGGAGAAACGGAGGAGGATCATTCTGACACATTGACTCTAGTAAAAGAAGTCGGTTATGATATGGCATACATGTTTGCTTATAGCATGAGGGAGAAAACACATGCCCACAGAAACTATGTCGATGATGTTCCTGAGGAAACTAAGCAGAGGAGGCTAACTGAACTTATTGAGACTTTCCGTGAGAGCACAGGAAAGTGTTACGACGAACAGGTTGGAACTACACAGCTTGTATTAGTTGAAGGACCCAATAAAAGAGCTCCAGATACTGAACTAATTGGCAAGAGTGACAAGGGCCATCGGGTAATATTTGTCAATCTGCCAATCTCAGACAGGGAAGATGTTAATACAAAGCGAAATCCTGTGGTTGGCGATTATGTTGAAGTTCAGATAACAAGATCTACAAGGGCATCACTCTTCGGCGAAGCACTTGCTATTACTAAATTGAGTTCATTTTACAATAATCTGGAGAGAGAAGCTGTTGCATGCAGCATGTAA
Protein sequence

>Msa0717090

MLFSLLTNHPHLHALSSTFPEPSHRFPTNLKTLPSATSSLKLLSPLPNFNSPSYNEIVTVPENAEIIFINTCAIRDNAEMKVWQRLNYFWFLKRNWKANVATGRSQSLRPPKVVVLGCMAERLKEKILDSDKMVDVVCGPDAYRDLPRLLEEVEYGQKGINTLLSLEETYADINPVRISQNSISAFVSVMRGCNNMCSFCIVPFTRGRERSRPVDSIVREVGELWKEGVKEVTLLGQNVNSYNDASVVGKEAEAGSNWKLSEGFSSISKVRTTGLRFSDLLDRLSLEFPEMRFRFTSPHPKDYPDELLYIMRERHNICKLIHLPAQSGSSKMLERMRRGYTREAYLSLVQKIRSIIPDVALSSDFICVPSSAEVEFRAMTQGFCGETEEDHSDTLTLVKEVGYDMAYMFAYSMREKTHAHRNYVDDVPEETKQRRLTELIETFRESTGKCYDEQVGTTQLVLVEGPNKRAPDTELIGKSDKGHRVIFVNLPISDREDVNTKRNPVVGDYVEVQITRSTRASLFGEALAITKLSSFYNNLEREAVACSM*