AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0379110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379110 MtrunA17_Chr3g0132191 98.140 215 2 2 4 217 3 216 3.34e-155 429
Msa0379110 MtrunA17_Chr7g0272991 66.038 159 40 4 38 185 83 238 3.44e-66 204
Msa0379110 MtrunA17_Chr2g0310741 68.276 145 35 4 37 172 84 226 1.42e-64 201
Msa0379110 MtrunA17_Chr1g0191681 69.014 142 33 2 38 168 83 224 4.49e-63 196
Msa0379110 MtrunA17_Chr2g0288481 55.479 146 51 2 38 171 67 210 4.10e-49 160
Msa0379110 MtrunA17_Chr2g0318881 62.069 87 32 1 55 140 21 107 3.52e-32 113
Msa0379110 MtrunA17_Chr2g0318921 61.364 88 33 1 55 141 21 108 1.14e-31 112
Msa0379110 MtrunA17_Chr8g0376351 71.429 63 18 0 74 136 1 63 5.18e-27 99.0
Msa0379110 MtrunA17_Chr3g0081161 40.506 79 47 0 56 134 8 86 5.60e-12 63.5
Msa0379110 MtrunA17_Chr8g0354151 37.975 79 49 0 56 134 8 86 8.51e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379110 AT3G48590.1 86.339 183 18 3 24 200 33 214 1.30e-101 294
Msa0379110 AT5G63470.2 75.688 218 23 5 12 206 20 230 8.62e-101 292
Msa0379110 AT5G63470.1 75.688 218 23 5 12 206 20 230 8.62e-101 292
Msa0379110 AT1G56170.1 70.588 136 35 2 35 168 55 187 1.45e-65 201
Msa0379110 AT1G56170.2 70.588 136 35 2 35 168 55 187 1.45e-65 201
Msa0379110 AT1G54830.2 65.359 153 46 3 38 184 52 203 2.71e-64 199
Msa0379110 AT1G54830.3 65.359 153 46 3 38 184 52 203 2.71e-64 199
Msa0379110 AT1G54830.1 65.359 153 46 3 38 184 52 203 2.71e-64 199
Msa0379110 AT1G08970.3 67.586 145 37 3 38 173 62 205 3.99e-63 196
Msa0379110 AT1G08970.4 67.586 145 37 3 38 173 62 205 3.99e-63 196
Msa0379110 AT1G08970.2 67.586 145 37 3 38 173 62 205 3.99e-63 196
Msa0379110 AT1G08970.1 67.586 145 37 3 38 173 62 205 3.99e-63 196
Msa0379110 AT5G50480.1 51.323 189 67 8 21 200 20 192 2.07e-52 168
Msa0379110 AT5G27910.1 43.779 217 88 7 1 213 1 187 5.54e-46 151
Msa0379110 AT5G50490.1 45.946 148 72 3 30 174 13 155 6.32e-37 128
Msa0379110 AT5G50470.1 39.086 197 94 7 21 208 31 210 1.23e-34 122
Msa0379110 AT5G38140.1 44.000 100 52 2 35 133 48 144 1.77e-25 98.6
Msa0379110 AT3G12480.1 37.975 79 49 0 56 134 8 86 9.00e-12 63.5

Find 101 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGCTAAAGCATATTTAA+TGG 0.228543 3_1:-80009370 None:intergenic
CATTAGATGAACGTTATTAA+AGG 0.257098 3_1:-80009585 None:intergenic
CTCAGGCTTGGCAGTCTGTT+TGG 0.288988 3_1:+80007524 Msa0379110:CDS
TTGAACTCACCATTCGTTCT+TGG 0.290380 3_1:+80007242 Msa0379110:CDS
CTAGGGCTTAATTTAATTGA+TGG 0.293080 3_1:+80009447 Msa0379110:three_prime_UTR
TTGTTGATCATCAAGTTAAA+AGG 0.293290 3_1:-80010032 None:intergenic
CTTTAGCCTGGGAAACTGTT+AGG 0.320246 3_1:+80009382 Msa0379110:three_prime_UTR
TCCTTATTATTATCCTCCTA+TGG 0.322109 3_1:+80007429 Msa0379110:CDS
CCCATAGGAGGATAATAATA+AGG 0.322822 3_1:-80007430 None:intergenic
GTGTTGGATATTGTTGTTGC+TGG 0.326874 3_1:-80006985 None:intergenic
TCTGTTTATATGTCTCAAAA+TGG 0.344957 3_1:+80009832 Msa0379110:three_prime_UTR
AATATCTTGTAAAAGACATT+TGG 0.349503 3_1:+80010219 Msa0379110:three_prime_UTR
TCATCATCATTCATCATTCA+TGG 0.360396 3_1:+80006949 Msa0379110:exon
AATTAGTTAGACTTTACAAT+TGG 0.370481 3_1:+80006779 None:intergenic
AATGGTTTCAATGCCTCATA+TGG 0.374157 3_1:+80009850 Msa0379110:three_prime_UTR
CACTCAGCTGCTGAGCAAAA+AGG 0.376691 3_1:-80009876 None:intergenic
TTATCTTATTCAAATTTCCT+AGG 0.377329 3_1:+80009429 Msa0379110:three_prime_UTR
ATATGTTTGATATAATGTTC+TGG 0.379160 3_1:-80009478 None:intergenic
TCAAGTTAAAAGGTTCTTGA+TGG 0.381822 3_1:-80010022 None:intergenic
TGAATAAGATAATTGATTGC+TGG 0.383736 3_1:-80009418 None:intergenic
TGCACAGAAGGACCATTGTT+TGG 0.387778 3_1:-80010088 None:intergenic
CAAGCTTTGGCAAAGAGAAT+TGG 0.395526 3_1:-80007205 None:intergenic
TTATGTTCAGCCGCCTTCTC+AGG 0.407879 3_1:+80007507 Msa0379110:CDS
AATGAAAAGCTCACAAGCTT+TGG 0.414215 3_1:-80007218 None:intergenic
AACAAGACAAACAAGCCAAC+TGG 0.422647 3_1:-80009807 None:intergenic
TGGTCGTCCCGCTGTTGATC+CGG 0.430949 3_1:+80007474 Msa0379110:CDS
CCATTAAATATGCTTTAGCC+TGG 0.435397 3_1:+80009370 Msa0379110:three_prime_UTR
TCACCTCCGTTAAGTCTCAT+TGG 0.436899 3_1:-80010175 None:intergenic
AAGTTTCCAATGAGACTTAA+CGG 0.438945 3_1:+80010169 Msa0379110:three_prime_UTR
CCTCCTATGGGACAACCTGC+TGG 0.443243 3_1:+80007442 Msa0379110:CDS
TCATGTACATCTGTGCTTCA+AGG 0.444382 3_1:+80009707 Msa0379110:three_prime_UTR
TTCAGCCGCCTTCTCAGGCT+TGG 0.445274 3_1:+80007512 Msa0379110:CDS
GTGGATGATGGTTCTTATGC+TGG 0.449967 3_1:+80007556 Msa0379110:CDS
GTCTGTTTGGCAGACGGGAG+TGG 0.451504 3_1:+80007537 Msa0379110:CDS
ATATTGCTGCTGCTATTACT+AGG 0.451638 3_1:+80007308 Msa0379110:CDS
AGTGACCGCGCTGCTGCTGA+TGG 0.452941 3_1:+80009895 Msa0379110:three_prime_UTR
AACAACAGCTTCAAATGTTC+TGG 0.455902 3_1:+80007062 Msa0379110:CDS
TGGCAGTCTGTTTGGCAGAC+GGG 0.457754 3_1:+80007532 Msa0379110:CDS
TGGACTTCTGCAGTGTTGCT+TGG 0.458943 3_1:+80009941 Msa0379110:three_prime_UTR
TCTTATGCTGGTGGTGGTGT+TGG 0.460055 3_1:+80007568 Msa0379110:CDS
TTGGCAGTCTGTTTGGCAGA+CGG 0.463047 3_1:+80007531 Msa0379110:CDS
CCCGCTGTTGATCCGGCTAC+CGG 0.469158 3_1:+80007481 Msa0379110:CDS
CCTTATTATTATCCTCCTAT+GGG 0.475192 3_1:+80007430 Msa0379110:CDS
ATTAGTTAGACTTTACAATT+GGG 0.481509 3_1:+80006780 None:intergenic
TGATGGAATTGTGAATTCAA+TGG 0.488221 3_1:-80006891 None:intergenic
AGGTAGGGCCTACGGCAGCC+TGG 0.493696 3_1:-80006840 None:intergenic
GTTATTGTAGGTGGTGGTAG+TGG 0.498276 3_1:+80009309 Msa0379110:intron
CATCAATTAAATTAAGCCCT+AGG 0.504678 3_1:-80009446 None:intergenic
TATCTTATTCAAATTTCCTA+GGG 0.509926 3_1:+80009430 Msa0379110:three_prime_UTR
GTTGTTGTTGGAGAAGATGT+TGG 0.512349 3_1:-80007039 None:intergenic
AATGGAATAACAACATAAGC+AGG 0.516458 3_1:-80009770 None:intergenic
TTGGATGATTGGATAAGGTA+GGG 0.519348 3_1:-80006855 None:intergenic
ATTCCAGCAGGTTGTCCCAT+AGG 0.521379 3_1:-80007445 None:intergenic
CCTGCATAATCTTGTAAATG+TGG 0.522307 3_1:+80009516 Msa0379110:three_prime_UTR
TGGCAGACGGGAGTGGATGA+TGG 0.530618 3_1:+80007544 Msa0379110:CDS
GCTGGTGGTGGTGTTGGCAG+TGG 0.530864 3_1:+80007574 Msa0379110:CDS
CAACCTGCTGGAATGATGAT+TGG 0.531059 3_1:+80007454 Msa0379110:CDS
TTCAATTTCTTGACGTTGGT+AGG 0.532955 3_1:-80007086 None:intergenic
GGTAGGGCCTACGGCAGCCT+GGG 0.538956 3_1:-80006839 None:intergenic
GGTGTAACTGCCGTGGGTGA+AGG 0.539087 3_1:-80007007 None:intergenic
CATTAAATATGCTTTAGCCT+GGG 0.541648 3_1:+80009371 Msa0379110:three_prime_UTR
TCATCTTTAATCTCGTCTCT+CGG 0.544717 3_1:-80007364 None:intergenic
CCACATTTACAAGATTATGC+AGG 0.551427 3_1:-80009516 None:intergenic
ATTGGATAAGGTAGGGCCTA+CGG 0.553186 3_1:-80006848 None:intergenic
TGTTTCACATATTGCACAGA+AGG 0.553286 3_1:-80010100 None:intergenic
TGAACATAAACACCGGTAGC+CGG 0.556443 3_1:-80007493 None:intergenic
ATTGTTGGTGCTGCTGCTAG+TGG 0.559151 3_1:+80007403 Msa0379110:CDS
TTTGGATGATTGGATAAGGT+AGG 0.559688 3_1:-80006856 None:intergenic
CGACCAATCATCATTCCAGC+AGG 0.560161 3_1:-80007457 None:intergenic
TGGAAGCAGAAAATGCTACT+AGG 0.560272 3_1:-80009350 None:intergenic
CTAAATCCTAACAGTTTCCC+AGG 0.561836 3_1:-80009388 None:intergenic
TTTGTTAACTAAATTTGTAT+GGG 0.564414 3_1:+80009996 Msa0379110:three_prime_UTR
TGCGTGCTAATGGAAGTTGA+TGG 0.566195 3_1:-80007129 None:intergenic
CCGGTAGCCGGATCAACAGC+GGG 0.566961 3_1:-80007481 None:intergenic
AGTGGTCAGCACAATGGCGA+TGG 0.568390 3_1:+80007592 Msa0379110:CDS
TGGTGGTGGTGTAACTGCCG+TGG 0.571103 3_1:-80007014 None:intergenic
CGTGTTCAATTTCTTGACGT+TGG 0.574575 3_1:-80007090 None:intergenic
GATGGTTCTTATGCTGGTGG+TGG 0.575597 3_1:+80007562 Msa0379110:CDS
TGGAGAAGATGTTGGAATGG+TGG 0.580552 3_1:-80007031 None:intergenic
GACTGCCAAGCCTGAGAAGG+CGG 0.581694 3_1:-80007517 None:intergenic
AGCATGAAGCCAAGAACGAA+TGG 0.590029 3_1:-80007251 None:intergenic
TGTTGGAGAAGATGTTGGAA+TGG 0.596521 3_1:-80007034 None:intergenic
CCAGCAGGTTGTCCCATAGG+AGG 0.597127 3_1:-80007442 None:intergenic
GGGGAAAGAAAAGAAGTCCC+AGG 0.599358 3_1:+80006822 Msa0379110:five_prime_UTR
ACAGACTGCCAAGCCTGAGA+AGG 0.599594 3_1:-80007520 None:intergenic
AGCACAATGGCGATGGCCAG+AGG 0.601116 3_1:+80007599 Msa0379110:CDS
AGAAGATGTTGGAATGGTGG+TGG 0.605173 3_1:-80007028 None:intergenic
AAGAAGTCCCAGGCTGCCGT+AGG 0.612683 3_1:+80006832 Msa0379110:five_prime_UTR
ACTGCCGTGGGTGAAGGTGT+TGG 0.614160 3_1:-80007001 None:intergenic
ATAAGATAATTGATTGCTGG+AGG 0.617569 3_1:-80009415 None:intergenic
ATCTGTGCTTCAAGGCACAC+AGG 0.620861 3_1:+80009715 Msa0379110:three_prime_UTR
GGAATTGTGAATTCAATGGA+AGG 0.624201 3_1:-80006887 None:intergenic
GGTGGTGGTGTAACTGCCGT+GGG 0.631253 3_1:-80007013 None:intergenic
ATATCCAACACCTTCACCCA+CGG 0.635031 3_1:+80006997 Msa0379110:CDS
ACCGGTAGCCGGATCAACAG+CGG 0.640253 3_1:-80007482 None:intergenic
GATGATGGTTCTTATGCTGG+TGG 0.644586 3_1:+80007559 Msa0379110:CDS
GTTGGCAGTGGTCAGCACAA+TGG 0.663712 3_1:+80007586 Msa0379110:CDS
CAAAATTTAAAACCAAACAA+TGG 0.674168 3_1:+80010076 Msa0379110:three_prime_UTR
AGGCGGCTGAACATAAACAC+CGG 0.726448 3_1:-80007500 None:intergenic
ACAGTCCATCAGCAGCAGCG+CGG 0.752725 3_1:-80009900 None:intergenic
TTTCCAATGAGACTTAACGG+AGG 0.790162 3_1:+80010172 Msa0379110:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAGATAAAAAACATTAA+AGG + chr3_1:80008481-80008500 Msa0379110:intron 10.0%
!!! TTAATTTATAGATGATTTTG+AGG + chr3_1:80008075-80008094 Msa0379110:intron 15.0%
!!! TAATTTATAGATGATTTTGA+GGG + chr3_1:80008076-80008095 Msa0379110:intron 15.0%
!! TTAATAAAAACAAAACAATG+TGG - chr3_1:80008622-80008641 None:intergenic 15.0%
!! TTATTAATTATTTATAGGTG+TGG + chr3_1:80008635-80008654 Msa0379110:intron 15.0%
!!! TTTTGTTAACTAAATTTGTA+TGG + chr3_1:80009995-80010014 Msa0379110:three_prime_UTR 15.0%
!! TTTGTTAACTAAATTTGTAT+GGG + chr3_1:80009996-80010015 Msa0379110:three_prime_UTR 15.0%
!!! GATTTTCTAAATTACATTTT+TGG + chr3_1:80010196-80010215 Msa0379110:three_prime_UTR 15.0%
!!! GACTGATATTTTTGATTTTT+TGG + chr3_1:80007330-80007349 Msa0379110:CDS 20.0%
!! TAAGTATTATGCAAGTATAA+AGG + chr3_1:80008125-80008144 Msa0379110:intron 20.0%
!! AAGTATTATGCAAGTATAAA+GGG + chr3_1:80008126-80008145 Msa0379110:intron 20.0%
!! TATCTAGATAGATATTTCAT+TGG + chr3_1:80008159-80008178 Msa0379110:intron 20.0%
!!! TTATGTTACATGTCATTTAT+TGG + chr3_1:80008254-80008273 Msa0379110:intron 20.0%
!! TAAAACATATTGGTAAATTC+CGG - chr3_1:80008561-80008580 None:intergenic 20.0%
!! GCAAATCTAATAAAACATAT+TGG - chr3_1:80008571-80008590 None:intergenic 20.0%
!! TTTGCTTTGCAATAAAATTA+TGG + chr3_1:80008586-80008605 Msa0379110:intron 20.0%
!! ATTTATGACAAAAACTTTGA+TGG + chr3_1:80008801-80008820 Msa0379110:intron 20.0%
!!! ATTTTCAAAACTATTGTTGA+TGG + chr3_1:80009261-80009280 Msa0379110:intron 20.0%
!!! CTTTCTTTTATTGTTATTGT+AGG + chr3_1:80009297-80009316 Msa0379110:intron 20.0%
!! TTATCTTATTCAAATTTCCT+AGG + chr3_1:80009429-80009448 Msa0379110:three_prime_UTR 20.0%
!! TATCTTATTCAAATTTCCTA+GGG + chr3_1:80009430-80009449 Msa0379110:three_prime_UTR 20.0%
!! ATATGTTTGATATAATGTTC+TGG - chr3_1:80009481-80009500 None:intergenic 20.0%
!!! CAAAATTTAAAACCAAACAA+TGG + chr3_1:80010076-80010095 Msa0379110:three_prime_UTR 20.0%
!! AATATCTTGTAAAAGACATT+TGG + chr3_1:80010219-80010238 Msa0379110:three_prime_UTR 20.0%
!! TCATTTTCTCATATTATTGC+TGG - chr3_1:80007921-80007940 None:intergenic 25.0%
! TTAAATGTAGCTACATTTGT+TGG + chr3_1:80007947-80007966 Msa0379110:intron 25.0%
! TAGATAGATATTTCATTGGT+TGG + chr3_1:80008163-80008182 Msa0379110:intron 25.0%
! TAGTATTACCTTGTCAAAAA+CGG + chr3_1:80008378-80008397 Msa0379110:intron 25.0%
!! TAGATGCTATGTTCTTTTAA+AGG + chr3_1:80008679-80008698 Msa0379110:intron 25.0%
!! AGATGCTATGTTCTTTTAAA+GGG + chr3_1:80008680-80008699 Msa0379110:intron 25.0%
! GTCAATAATAATCCATAACA+AGG - chr3_1:80008827-80008846 None:intergenic 25.0%
!!! TGGATTATTATTGACTTAGT+CGG + chr3_1:80008832-80008851 Msa0379110:intron 25.0%
! TCTGATCTAATCAATGAATT+GGG - chr3_1:80009042-80009061 None:intergenic 25.0%
! ATCTGATCTAATCAATGAAT+TGG - chr3_1:80009043-80009062 None:intergenic 25.0%
! ACCATTTATGTAAGATTAGA+TGG + chr3_1:80009149-80009168 Msa0379110:intron 25.0%
! ACCATCTAATCTTACATAAA+TGG - chr3_1:80009153-80009172 None:intergenic 25.0%
!!! TCTTTTATTGTTATTGTAGG+TGG + chr3_1:80009300-80009319 Msa0379110:intron 25.0%
! TGAATAAGATAATTGATTGC+TGG - chr3_1:80009421-80009440 None:intergenic 25.0%
! CATTAGATGAACGTTATTAA+AGG - chr3_1:80009588-80009607 None:intergenic 25.0%
! TCTGTTTATATGTCTCAAAA+TGG + chr3_1:80009832-80009851 Msa0379110:three_prime_UTR 25.0%
!!! TGTTGCTTGGAATTTTTTTA+GGG + chr3_1:80009954-80009973 Msa0379110:three_prime_UTR 25.0%
! TTGTTGATCATCAAGTTAAA+AGG - chr3_1:80010035-80010054 None:intergenic 25.0%
GGCAAACAAAAAATTTCGAA+GGG + chr3_1:80006801-80006820 Msa0379110:five_prime_UTR 30.0%
GCAAACAAAAAATTTCGAAG+GGG + chr3_1:80006802-80006821 Msa0379110:five_prime_UTR 30.0%
CAAACAAAAAATTTCGAAGG+GGG + chr3_1:80006803-80006822 Msa0379110:five_prime_UTR 30.0%
!! CATTTTTGGATGATTGGATA+AGG - chr3_1:80006863-80006882 None:intergenic 30.0%
!! GGAAATCATTTTTGGATGAT+TGG - chr3_1:80006869-80006888 None:intergenic 30.0%
! CAATGGAAGGAAATCATTTT+TGG - chr3_1:80006877-80006896 None:intergenic 30.0%
TGATGGAATTGTGAATTCAA+TGG - chr3_1:80006894-80006913 None:intergenic 30.0%
!!! ATGTTTTGAGGAGTAACAAT+TGG - chr3_1:80006930-80006949 None:intergenic 30.0%
!! TGAATGATGATGATGTTTTG+AGG - chr3_1:80006942-80006961 None:intergenic 30.0%
TCATCATCATTCATCATTCA+TGG + chr3_1:80006949-80006968 Msa0379110:exon 30.0%
! ATTTTCTTAATGCGTGCTAA+TGG - chr3_1:80007142-80007161 None:intergenic 30.0%
TCCTTATTATTATCCTCCTA+TGG + chr3_1:80007429-80007448 Msa0379110:CDS 30.0%
CCTTATTATTATCCTCCTAT+GGG + chr3_1:80007430-80007449 Msa0379110:CDS 30.0%
!! TTAAAAGTGTTTGTGTCAGT+TGG + chr3_1:80007770-80007789 Msa0379110:intron 30.0%
! ATATCAGCGTTTTATAGCAA+CGG - chr3_1:80007836-80007855 None:intergenic 30.0%
ACAGTGTTGCATATGTATTT+AGG + chr3_1:80007997-80008016 Msa0379110:intron 30.0%
! TAGATATTTCATTGGTTGGT+TGG + chr3_1:80008167-80008186 Msa0379110:intron 30.0%
ATACATTGGACTAAAACAGA+AGG - chr3_1:80008335-80008354 None:intergenic 30.0%
AATGAGACAAAGAGATACAT+TGG - chr3_1:80008349-80008368 None:intergenic 30.0%
!! GTTCTGCTTTTCTTAGATTT+CGG + chr3_1:80008455-80008474 Msa0379110:intron 30.0%
!! GGATTATTATTGACTTAGTC+GGG + chr3_1:80008833-80008852 Msa0379110:intron 30.0%
!! GATTATTATTGACTTAGTCG+GGG + chr3_1:80008834-80008853 Msa0379110:intron 30.0%
!! ATTATTATTGACTTAGTCGG+GGG + chr3_1:80008835-80008854 Msa0379110:intron 30.0%
TTTAAACGCTCAAAAGACTA+TGG + chr3_1:80008914-80008933 Msa0379110:intron 30.0%
!! AACTGTGATGTGTTTTTATC+TGG + chr3_1:80009072-80009091 Msa0379110:intron 30.0%
!! ACTGTGATGTGTTTTTATCT+GGG + chr3_1:80009073-80009092 Msa0379110:intron 30.0%
GTGAACAATGACAGTTTAAA+TGG + chr3_1:80009104-80009123 Msa0379110:intron 30.0%
! TTTATTGTTATTGTAGGTGG+TGG + chr3_1:80009303-80009322 Msa0379110:intron 30.0%
CATTAAATATGCTTTAGCCT+GGG + chr3_1:80009371-80009390 Msa0379110:three_prime_UTR 30.0%
ATAAGATAATTGATTGCTGG+AGG - chr3_1:80009418-80009437 None:intergenic 30.0%
CATCAATTAAATTAAGCCCT+AGG - chr3_1:80009449-80009468 None:intergenic 30.0%
CTAGGGCTTAATTTAATTGA+TGG + chr3_1:80009447-80009466 Msa0379110:three_prime_UTR 30.0%
AATGGAATAACAACATAAGC+AGG - chr3_1:80009773-80009792 None:intergenic 30.0%
CTGGAAGAAAAAAATCAGAA+TGG - chr3_1:80009791-80009810 None:intergenic 30.0%
!!! TCTGATTTTTTTCTTCCAGT+TGG + chr3_1:80009792-80009811 Msa0379110:three_prime_UTR 30.0%
!!! GTGTTGCTTGGAATTTTTTT+AGG + chr3_1:80009953-80009972 Msa0379110:three_prime_UTR 30.0%
TCAAGTTAAAAGGTTCTTGA+TGG - chr3_1:80010025-80010044 None:intergenic 30.0%
AAGTTTCCAATGAGACTTAA+CGG + chr3_1:80010169-80010188 Msa0379110:three_prime_UTR 30.0%
GGGCAAACAAAAAATTTCGA+AGG + chr3_1:80006800-80006819 Msa0379110:five_prime_UTR 35.0%
TTGGATGATTGGATAAGGTA+GGG - chr3_1:80006858-80006877 None:intergenic 35.0%
TTTGGATGATTGGATAAGGT+AGG - chr3_1:80006859-80006878 None:intergenic 35.0%
GGAATTGTGAATTCAATGGA+AGG - chr3_1:80006890-80006909 None:intergenic 35.0%
!! TTTTGAGGAGTAACAATTGG+TGG - chr3_1:80006927-80006946 None:intergenic 35.0%
AACAACAGCTTCAAATGTTC+TGG + chr3_1:80007062-80007081 Msa0379110:CDS 35.0%
TTCAATTTCTTGACGTTGGT+AGG - chr3_1:80007089-80007108 None:intergenic 35.0%
AATGAAAAGCTCACAAGCTT+TGG - chr3_1:80007221-80007240 None:intergenic 35.0%
ATATTGCTGCTGCTATTACT+AGG + chr3_1:80007308-80007327 Msa0379110:CDS 35.0%
TCATCTTTAATCTCGTCTCT+CGG - chr3_1:80007367-80007386 None:intergenic 35.0%
CCCATAGGAGGATAATAATA+AGG - chr3_1:80007433-80007452 None:intergenic 35.0%
ATCGAACAAAATGATACCTC+TGG - chr3_1:80007618-80007637 None:intergenic 35.0%
TGTGCTTACAAAGAGATCTT+TGG + chr3_1:80007646-80007665 Msa0379110:intron 35.0%
GTGCTTACAAAGAGATCTTT+GGG + chr3_1:80007647-80007666 Msa0379110:intron 35.0%
TGCTTACAAAGAGATCTTTG+GGG + chr3_1:80007648-80007667 Msa0379110:intron 35.0%
GGAATATGAATCACGAACAT+CGG + chr3_1:80007686-80007705 Msa0379110:intron 35.0%
!! TGTCACTTTGGTTCAATGTA+TGG - chr3_1:80007980-80007999 None:intergenic 35.0%
GTGTTGCATATGTATTTAGG+AGG + chr3_1:80008000-80008019 Msa0379110:intron 35.0%
! TTAGGAGGTCTATTTTGTGT+TGG + chr3_1:80008015-80008034 Msa0379110:intron 35.0%
!!! GGGAGTGTTAAAATGCATTT+TGG + chr3_1:80008096-80008115 Msa0379110:intron 35.0%
! AGTTGCATTTTCCATTTCAC+TGG + chr3_1:80008422-80008441 Msa0379110:intron 35.0%
! GTTGCATTTTCCATTTCACT+GGG + chr3_1:80008423-80008442 Msa0379110:intron 35.0%
CGAGATTTATATTTGCACTG+AGG + chr3_1:80008506-80008525 Msa0379110:intron 35.0%
!! TATTATGCTTTTGCTGTGAG+AGG + chr3_1:80008530-80008549 Msa0379110:intron 35.0%
ATTTATAGGTGTGGCTGATT+TGG + chr3_1:80008644-80008663 Msa0379110:intron 35.0%
!! AAACTTTGATGGCCTTGTTA+TGG + chr3_1:80008812-80008831 Msa0379110:intron 35.0%
! TTGGTTGTTGTTGTTAGGTT+AGG + chr3_1:80008981-80009000 Msa0379110:intron 35.0%
TCTAATCAATGAATTGGGTC+AGG - chr3_1:80009037-80009056 None:intergenic 35.0%
!! TGATGTGTTTTTATCTGGGA+GGG + chr3_1:80009077-80009096 Msa0379110:intron 35.0%
CCAGGCTAAAGCATATTTAA+TGG - chr3_1:80009373-80009392 None:intergenic 35.0%
CCATTAAATATGCTTTAGCC+TGG + chr3_1:80009370-80009389 Msa0379110:three_prime_UTR 35.0%
CCACATTTACAAGATTATGC+AGG - chr3_1:80009519-80009538 None:intergenic 35.0%
CCTGCATAATCTTGTAAATG+TGG + chr3_1:80009516-80009535 Msa0379110:three_prime_UTR 35.0%
AATGGTTTCAATGCCTCATA+TGG + chr3_1:80009850-80009869 Msa0379110:three_prime_UTR 35.0%
AGCAAAAAGGAAACCATATG+AGG - chr3_1:80009866-80009885 None:intergenic 35.0%
GTCAAGACTTAAAAAGATGC+TGG + chr3_1:80009921-80009940 Msa0379110:three_prime_UTR 35.0%
TGTTTCACATATTGCACAGA+AGG - chr3_1:80010103-80010122 None:intergenic 35.0%
!!! TTGGTGGCTGTTGATTTTGA+TGG - chr3_1:80006911-80006930 None:intergenic 40.0%
! GTGTTGGATATTGTTGTTGC+TGG - chr3_1:80006988-80007007 None:intergenic 40.0%
TGTTGGAGAAGATGTTGGAA+TGG - chr3_1:80007037-80007056 None:intergenic 40.0%
! GTTGTTGTTGGAGAAGATGT+TGG - chr3_1:80007042-80007061 None:intergenic 40.0%
! GAAGCTGTTGTTGTTGTTGT+TGG - chr3_1:80007054-80007073 None:intergenic 40.0%
CGTGTTCAATTTCTTGACGT+TGG - chr3_1:80007093-80007112 None:intergenic 40.0%
! CAAGCTTTGGCAAAGAGAAT+TGG - chr3_1:80007208-80007227 None:intergenic 40.0%
TTGAACTCACCATTCGTTCT+TGG + chr3_1:80007242-80007261 Msa0379110:CDS 40.0%
GCTTACAAAGAGATCTTTGG+GGG + chr3_1:80007649-80007668 Msa0379110:intron 40.0%
! TTGGGGGTGAATTTTTGTCT+TGG + chr3_1:80007665-80007684 Msa0379110:intron 40.0%
TACCAACATGTGTTAGACGT+AGG + chr3_1:80007794-80007813 Msa0379110:intron 40.0%
TCAGTGGTATAGATGTCATG+TGG - chr3_1:80007888-80007907 None:intergenic 40.0%
CATCTATACCACTGACATGT+TGG + chr3_1:80007893-80007912 Msa0379110:intron 40.0%
! CATATGCAACACTGTCACTT+TGG - chr3_1:80007992-80008011 None:intergenic 40.0%
!! AGGTCTATTTTGTGTTGGTG+AGG + chr3_1:80008020-80008039 Msa0379110:intron 40.0%
!! TATTTTGTGTTGGTGAGGCT+TGG + chr3_1:80008025-80008044 Msa0379110:intron 40.0%
!! ATTTTGTGTTGGTGAGGCTT+GGG + chr3_1:80008026-80008045 Msa0379110:intron 40.0%
!! TCTACGATCCGTTTTTGACA+AGG - chr3_1:80008389-80008408 None:intergenic 40.0%
CTTTCTCATGCACAAACTAC+TGG + chr3_1:80008885-80008904 Msa0379110:intron 40.0%
! AAGGCTTGGTTGTTGTTGTT+AGG + chr3_1:80008976-80008995 Msa0379110:intron 40.0%
TCAATGAATTGGGTCAGGTT+GGG - chr3_1:80009032-80009051 None:intergenic 40.0%
ATCAATGAATTGGGTCAGGT+TGG - chr3_1:80009033-80009052 None:intergenic 40.0%
!! GTGATGTGTTTTTATCTGGG+AGG + chr3_1:80009076-80009095 Msa0379110:intron 40.0%
!! GATGTGTTTTTATCTGGGAG+GGG + chr3_1:80009078-80009097 Msa0379110:intron 40.0%
!! ATGTGTTTTTATCTGGGAGG+GGG + chr3_1:80009079-80009098 Msa0379110:intron 40.0%
TGGAAGCAGAAAATGCTACT+AGG - chr3_1:80009353-80009372 None:intergenic 40.0%
CTAAATCCTAACAGTTTCCC+AGG - chr3_1:80009391-80009410 None:intergenic 40.0%
TCATGTACATCTGTGCTTCA+AGG + chr3_1:80009707-80009726 Msa0379110:three_prime_UTR 40.0%
AACAAGACAAACAAGCCAAC+TGG - chr3_1:80009810-80009829 None:intergenic 40.0%
TTTCCAATGAGACTTAACGG+AGG + chr3_1:80010172-80010191 Msa0379110:three_prime_UTR 40.0%
ATTGGATAAGGTAGGGCCTA+CGG - chr3_1:80006851-80006870 None:intergenic 45.0%
ATATCCAACACCTTCACCCA+CGG + chr3_1:80006997-80007016 Msa0379110:CDS 45.0%
AGAAGATGTTGGAATGGTGG+TGG - chr3_1:80007031-80007050 None:intergenic 45.0%
TGGAGAAGATGTTGGAATGG+TGG - chr3_1:80007034-80007053 None:intergenic 45.0%
TGCGTGCTAATGGAAGTTGA+TGG - chr3_1:80007132-80007151 None:intergenic 45.0%
AGCATGAAGCCAAGAACGAA+TGG - chr3_1:80007254-80007273 None:intergenic 45.0%
CAACCTGCTGGAATGATGAT+TGG + chr3_1:80007454-80007473 Msa0379110:CDS 45.0%
TGAACATAAACACCGGTAGC+CGG - chr3_1:80007496-80007515 None:intergenic 45.0%
! GTGGATGATGGTTCTTATGC+TGG + chr3_1:80007556-80007575 Msa0379110:CDS 45.0%
! GATGATGGTTCTTATGCTGG+TGG + chr3_1:80007559-80007578 Msa0379110:CDS 45.0%
GGACAACATCAATGACACGT+AGG + chr3_1:80007707-80007726 Msa0379110:intron 45.0%
!! TTTTGTGTTGGTGAGGCTTG+GGG + chr3_1:80008027-80008046 Msa0379110:intron 45.0%
!! TGCTTTTGCTGTGAGAGGAA+TGG + chr3_1:80008535-80008554 Msa0379110:intron 45.0%
ACTTAGTCGGGGGTTCATAT+AGG + chr3_1:80008845-80008864 Msa0379110:intron 45.0%
CTTAGTCGGGGGTTCATATA+GGG + chr3_1:80008846-80008865 Msa0379110:intron 45.0%
GGTTCATATAGGGAAGGTTC+TGG + chr3_1:80008856-80008875 Msa0379110:intron 45.0%
CATGTAACCGATCCCACTTA+GGG + chr3_1:80008949-80008968 Msa0379110:intron 45.0%
ATGTAACCGATCCCACTTAG+GGG + chr3_1:80008950-80008969 Msa0379110:intron 45.0%
CTTATTCCCCTAAGTGGGAT+CGG - chr3_1:80008959-80008978 None:intergenic 45.0%
!! CAAGCCTTATTCCCCTAAGT+GGG - chr3_1:80008964-80008983 None:intergenic 45.0%
! CAATGAATTGGGTCAGGTTG+GGG - chr3_1:80009031-80009050 None:intergenic 45.0%
ACTTGCACTCTCGCATAATG+TGG + chr3_1:80009191-80009210 Msa0379110:intron 45.0%
! GTTATTGTAGGTGGTGGTAG+TGG + chr3_1:80009309-80009328 Msa0379110:intron 45.0%
CTTTAGCCTGGGAAACTGTT+AGG + chr3_1:80009382-80009401 Msa0379110:three_prime_UTR 45.0%
TGCACAGAAGGACCATTGTT+TGG - chr3_1:80010091-80010110 None:intergenic 45.0%
TCACCTCCGTTAAGTCTCAT+TGG - chr3_1:80010178-80010197 None:intergenic 45.0%
!!! TGTTTTTATTAATTATTTAT+AGG + chr3_1:80008630-80008649 Msa0379110:intron 5.0%
GGGGAAAGAAAAGAAGTCCC+AGG + chr3_1:80006822-80006841 Msa0379110:five_prime_UTR 50.0%
!! ATTGTTGGTGCTGCTGCTAG+TGG + chr3_1:80007403-80007422 Msa0379110:CDS 50.0%
ATTCCAGCAGGTTGTCCCAT+AGG - chr3_1:80007448-80007467 None:intergenic 50.0%
CGACCAATCATCATTCCAGC+AGG - chr3_1:80007460-80007479 None:intergenic 50.0%
AGGCGGCTGAACATAAACAC+CGG - chr3_1:80007503-80007522 None:intergenic 50.0%
TTATGTTCAGCCGCCTTCTC+AGG + chr3_1:80007507-80007526 Msa0379110:CDS 50.0%
TTGGCAGTCTGTTTGGCAGA+CGG + chr3_1:80007531-80007550 Msa0379110:CDS 50.0%
GATGGTTCTTATGCTGGTGG+TGG + chr3_1:80007562-80007581 Msa0379110:CDS 50.0%
!! TCTTATGCTGGTGGTGGTGT+TGG + chr3_1:80007568-80007587 Msa0379110:CDS 50.0%
GGCCTACGTCTAACACATGT+TGG - chr3_1:80007799-80007818 None:intergenic 50.0%
GCAACGGCACTTCAGATTGA+AGG - chr3_1:80007820-80007839 None:intergenic 50.0%
TGCTGGTACCAACATGTCAG+TGG - chr3_1:80007904-80007923 None:intergenic 50.0%
AGTGTCAGGGTTTCACTGGT+TGG + chr3_1:80008050-80008069 Msa0379110:intron 50.0%
CCAACTAGCACCCAGTGAAA+TGG - chr3_1:80008436-80008455 None:intergenic 50.0%
CCATTTCACTGGGTGCTAGT+TGG + chr3_1:80008433-80008452 Msa0379110:intron 50.0%
! TTTGCTGTGAGAGGAATGGC+CGG + chr3_1:80008539-80008558 Msa0379110:intron 50.0%
CCTAAGTGGGATCGGTTACA+TGG - chr3_1:80008951-80008970 None:intergenic 50.0%
CCATGTAACCGATCCCACTT+AGG + chr3_1:80008948-80008967 Msa0379110:intron 50.0%
CGATCCCACTTAGGGGAATA+AGG + chr3_1:80008957-80008976 Msa0379110:intron 50.0%
!! CCAAGCCTTATTCCCCTAAG+TGG - chr3_1:80008965-80008984 None:intergenic 50.0%
CCACTTAGGGGAATAAGGCT+TGG + chr3_1:80008962-80008981 Msa0379110:intron 50.0%
!! TGTTTTTATCTGGGAGGGGG+TGG + chr3_1:80009082-80009101 Msa0379110:intron 50.0%
ATCTGTGCTTCAAGGCACAC+AGG + chr3_1:80009715-80009734 Msa0379110:three_prime_UTR 50.0%
CACTCAGCTGCTGAGCAAAA+AGG - chr3_1:80009879-80009898 None:intergenic 50.0%
! TGGACTTCTGCAGTGTTGCT+TGG + chr3_1:80009941-80009960 Msa0379110:three_prime_UTR 50.0%
GCTGCTGCTGCTGCTATTGT+TGG + chr3_1:80007388-80007407 Msa0379110:CDS 55.0%
ACAGACTGCCAAGCCTGAGA+AGG - chr3_1:80007523-80007542 None:intergenic 55.0%
CTCAGGCTTGGCAGTCTGTT+TGG + chr3_1:80007524-80007543 Msa0379110:CDS 55.0%
TGGCAGTCTGTTTGGCAGAC+GGG + chr3_1:80007532-80007551 Msa0379110:CDS 55.0%
GTTGGCAGTGGTCAGCACAA+TGG + chr3_1:80007586-80007605 Msa0379110:CDS 55.0%
AGTGGTCAGCACAATGGCGA+TGG + chr3_1:80007592-80007611 Msa0379110:CDS 55.0%
GTCGGGGGTTCATATAGGGA+AGG + chr3_1:80008850-80008869 Msa0379110:intron 55.0%
AAGAAGTCCCAGGCTGCCGT+AGG + chr3_1:80006832-80006851 Msa0379110:five_prime_UTR 60.0%
! ACTGCCGTGGGTGAAGGTGT+TGG - chr3_1:80007004-80007023 None:intergenic 60.0%
GGTGTAACTGCCGTGGGTGA+AGG - chr3_1:80007010-80007029 None:intergenic 60.0%
! GGTGGTGGTGTAACTGCCGT+GGG - chr3_1:80007016-80007035 None:intergenic 60.0%
!! TGGTGGTGGTGTAACTGCCG+TGG - chr3_1:80007017-80007036 None:intergenic 60.0%
CCAGCAGGTTGTCCCATAGG+AGG - chr3_1:80007445-80007464 None:intergenic 60.0%
CCTCCTATGGGACAACCTGC+TGG + chr3_1:80007442-80007461 Msa0379110:CDS 60.0%
TGGTCGTCCCGCTGTTGATC+CGG + chr3_1:80007474-80007493 Msa0379110:CDS 60.0%
ACCGGTAGCCGGATCAACAG+CGG - chr3_1:80007485-80007504 None:intergenic 60.0%
TTCAGCCGCCTTCTCAGGCT+TGG + chr3_1:80007512-80007531 Msa0379110:CDS 60.0%
GACTGCCAAGCCTGAGAAGG+CGG - chr3_1:80007520-80007539 None:intergenic 60.0%
GTCTGTTTGGCAGACGGGAG+TGG + chr3_1:80007537-80007556 Msa0379110:CDS 60.0%
TGGCAGACGGGAGTGGATGA+TGG + chr3_1:80007544-80007563 Msa0379110:CDS 60.0%
AGCACAATGGCGATGGCCAG+AGG + chr3_1:80007599-80007618 Msa0379110:CDS 60.0%
!! GTGAGGCTTGGGGAGTGTCA+GGG + chr3_1:80008037-80008056 Msa0379110:intron 60.0%
!! GGGGAGTGTCAGGGTTTCAC+TGG + chr3_1:80008046-80008065 Msa0379110:intron 60.0%
ACAGTCCATCAGCAGCAGCG+CGG - chr3_1:80009903-80009922 None:intergenic 60.0%
CCGGTAGCCGGATCAACAGC+GGG - chr3_1:80007484-80007503 None:intergenic 65.0%
CCCGCTGTTGATCCGGCTAC+CGG + chr3_1:80007481-80007500 Msa0379110:CDS 65.0%
!! GCTGGTGGTGGTGTTGGCAG+TGG + chr3_1:80007574-80007593 Msa0379110:CDS 65.0%
!! GGTGAGGCTTGGGGAGTGTC+AGG + chr3_1:80008036-80008055 Msa0379110:intron 65.0%
AGTGACCGCGCTGCTGCTGA+TGG + chr3_1:80009895-80009914 Msa0379110:three_prime_UTR 65.0%
GGTAGGGCCTACGGCAGCCT+GGG - chr3_1:80006842-80006861 None:intergenic 70.0%
AGGTAGGGCCTACGGCAGCC+TGG - chr3_1:80006843-80006862 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 80006784 80010266 80006784 ID=Msa0379110;Name=Msa0379110
chr3_1 mRNA 80006784 80010266 80006784 ID=Msa0379110-mRNA-1;Parent=Msa0379110;Name=Msa0379110-mRNA-1;_AED=0.00;_eAED=0.00;_QI=184|1|1|1|1|1|2|938|220
chr3_1 exon 80006784 80007620 80006784 ID=Msa0379110-mRNA-1:exon:19864;Parent=Msa0379110-mRNA-1
chr3_1 exon 80009319 80010266 80009319 ID=Msa0379110-mRNA-1:exon:19865;Parent=Msa0379110-mRNA-1
chr3_1 five_prime_UTR 80006784 80006967 80006784 ID=Msa0379110-mRNA-1:five_prime_utr;Parent=Msa0379110-mRNA-1
chr3_1 CDS 80006968 80007620 80006968 ID=Msa0379110-mRNA-1:cds;Parent=Msa0379110-mRNA-1
chr3_1 CDS 80009319 80009328 80009319 ID=Msa0379110-mRNA-1:cds;Parent=Msa0379110-mRNA-1
chr3_1 three_prime_UTR 80009329 80010266 80009329 ID=Msa0379110-mRNA-1:three_prime_utr;Parent=Msa0379110-mRNA-1
Gene Sequence

>Msa0379110

ATGGAGAACAACAACAACCAGCAACAACAATATCCAACACCTTCACCCACGGCAGTTACACCACCACCATTCCAACATCTTCTCCAACAACAACAACAACAGCTTCAAATGTTCTGGTCCTACCAACGTCAAGAAATTGAACACGTCAACGATTTCAAAAACCATCAACTTCCATTAGCACGCATTAAGAAAATCATGAAAGCTGATGAAGACGTTCGAATGATTTCTGCAGAAGCACCAATTCTCTTTGCCAAAGCTTGTGAGCTTTTCATTCTTGAACTCACCATTCGTTCTTGGCTTCATGCTGAAGAGAATAAACGACGAACTCTTCAGAAAAATGATATTGCTGCTGCTATTACTAGGACTGATATTTTTGATTTTTTGGTTGATATTGTTCCGAGAGACGAGATTAAAGATGAAGCTGCTGCTGCTGCTATTGTTGGTGCTGCTGCTAGTGGTGTTCCTTATTATTATCCTCCTATGGGACAACCTGCTGGAATGATGATTGGTCGTCCCGCTGTTGATCCGGCTACCGGTGTTTATGTTCAGCCGCCTTCTCAGGCTTGGCAGTCTGTTTGGCAGACGGGAGTGGATGATGGTTCTTATGCTGGTGGTGGTGTTGGCAGTGGTCAGCACAATGGCGATGGCCAGAGGTGGTGGTAG

Protein sequence

>Msa0379110

MENNNNQQQQYPTPSPTAVTPPPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAAAAIVGAAASGVPYYYPPMGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQTGVDDGSYAGGGVGSGQHNGDGQRWW*