Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361840 | XP_013470128.1 | 94.477 | 344 | 19 | 0 | 1 | 344 | 1 | 344 | 0.0 | 673 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361840 | sp|Q9C9F4|COLX_ARATH | 38.535 | 314 | 135 | 8 | 1 | 311 | 10 | 268 | 4.28e-64 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361840 | G8A287 | 94.477 | 344 | 19 | 0 | 1 | 344 | 1 | 344 | 0.0 | 673 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006870 | Msa1361840 | 0.809650 | 1.704138e-50 | -8.615850e-47 |
| Msa0040520 | Msa1361840 | -0.815227 | 1.029737e-51 | -8.615850e-47 |
| Msa0043160 | Msa1361840 | 0.955623 | 1.979123e-113 | -8.615850e-47 |
| Msa0043680 | Msa1361840 | 0.814401 | 1.570172e-51 | -8.615850e-47 |
| Msa0077910 | Msa1361840 | 0.811295 | 7.518258e-51 | -8.615850e-47 |
| Msa0092660 | Msa1361840 | 0.806658 | 7.392141e-50 | -8.615850e-47 |
| Msa0092730 | Msa1361840 | 0.807618 | 4.629592e-50 | -8.615850e-47 |
| Msa0100570 | Msa1361840 | 0.805733 | 1.157287e-49 | -8.615850e-47 |
| Msa0100860 | Msa1361840 | 0.804172 | 2.453714e-49 | -8.615850e-47 |
| Msa1361840 | Msa1365810 | 0.812313 | 4.515034e-51 | -8.615850e-47 |
| Msa1361840 | Msa1367810 | 0.803236 | 3.838534e-49 | -8.615850e-47 |
| Msa1361840 | Msa1398840 | 0.817105 | 3.917567e-52 | -8.615850e-47 |
| Msa1361840 | Msa1415250 | 0.817514 | 3.169818e-52 | -8.615850e-47 |
| Msa1361840 | Msa1422490 | 0.802752 | 4.832337e-49 | -8.615850e-47 |
| Msa1361840 | Msa1424240 | 0.818423 | 1.975026e-52 | -8.615850e-47 |
| Msa1361840 | Msa1437320 | 0.813562 | 2.403765e-51 | -8.615850e-47 |
| Msa0605670 | Msa1361840 | 0.817976 | 2.493528e-52 | -8.615850e-47 |
| Msa0607480 | Msa1361840 | 0.819757 | 9.818845e-53 | -8.615850e-47 |
| Msa0620130 | Msa1361840 | 0.842310 | 2.795737e-58 | -8.615850e-47 |
| Msa0646710 | Msa1361840 | 0.813379 | 2.636567e-51 | -8.615850e-47 |
| Msa0647750 | Msa1361840 | 0.810338 | 1.211319e-50 | -8.615850e-47 |
| Msa0659920 | Msa1361840 | 0.882968 | 6.673391e-71 | -8.615850e-47 |
| Msa0671610 | Msa1361840 | -0.805713 | 1.168999e-49 | -8.615850e-47 |
| Msa0686240 | Msa1361840 | 0.822372 | 2.454233e-53 | -8.615850e-47 |
| Msa0690500 | Msa1361840 | 0.806446 | 8.194286e-50 | -8.615850e-47 |
| Msa0703760 | Msa1361840 | 0.814226 | 1.715993e-51 | -8.615850e-47 |
| Msa0706580 | Msa1361840 | 0.873896 | 1.030611e-67 | -8.615850e-47 |
| Msa0732100 | Msa1361840 | 0.809289 | 2.036634e-50 | -8.615850e-47 |
| Msa0773080 | Msa1361840 | 0.812727 | 3.665202e-51 | -8.615850e-47 |
| Msa0804110 | Msa1361840 | 0.805072 | 1.592408e-49 | -8.615850e-47 |
| Msa0810370 | Msa1361840 | 0.817648 | 2.957728e-52 | -8.615850e-47 |
| Msa0121650 | Msa1361840 | 0.807259 | 5.516717e-50 | -8.615850e-47 |
| Msa0125800 | Msa1361840 | 0.817482 | 3.223184e-52 | -8.615850e-47 |
| Msa0137030 | Msa1361840 | 0.980376 | 4.478755e-150 | -8.615850e-47 |
| Msa0137600 | Msa1361840 | 0.809239 | 2.087738e-50 | -8.615850e-47 |
| Msa0170440 | Msa1361840 | 0.814530 | 1.470062e-51 | -8.615850e-47 |
| Msa0175280 | Msa1361840 | 0.803171 | 3.959644e-49 | -8.615850e-47 |
| Msa0179800 | Msa1361840 | -0.803453 | 3.461222e-49 | -8.615850e-47 |
| Msa0182270 | Msa1361840 | 0.937485 | 3.208051e-98 | -8.615850e-47 |
| Msa1271510 | Msa1361840 | 0.806994 | 6.278279e-50 | -8.615850e-47 |
| Msa1279700 | Msa1361840 | 0.816834 | 4.507880e-52 | -8.615850e-47 |
| Msa1305650 | Msa1361840 | 0.807579 | 4.718991e-50 | -8.615850e-47 |
| Msa0368430 | Msa1361840 | 0.805659 | 1.199856e-49 | -8.615850e-47 |
| Msa0379110 | Msa1361840 | 0.818639 | 1.764817e-52 | -8.615850e-47 |
| Msa0379390 | Msa1361840 | 0.818346 | 2.056767e-52 | -8.615850e-47 |
| Msa0379450 | Msa1361840 | 0.825706 | 4.049298e-54 | -8.615850e-47 |
| Msa0415930 | Msa1361840 | 0.807136 | 5.858578e-50 | -8.615850e-47 |
| Msa0417630 | Msa1361840 | 0.820308 | 7.345226e-53 | -8.615850e-47 |
| Msa0480150 | Msa1361840 | 0.807210 | 5.648259e-50 | -8.615850e-47 |
| Msa1022310 | Msa1361840 | 0.804573 | 2.024520e-49 | -8.615850e-47 |
| Msa1027790 | Msa1361840 | 0.815334 | 9.748703e-52 | -8.615850e-47 |
| Msa1040770 | Msa1361840 | 0.801847 | 7.421972e-49 | -8.615850e-47 |
| Msa1045440 | Msa1361840 | 0.842433 | 2.593838e-58 | -8.615850e-47 |
| Msa1067430 | Msa1361840 | 0.820393 | 7.024228e-53 | -8.615850e-47 |
| Msa1072080 | Msa1361840 | 0.814279 | 1.670565e-51 | -8.615850e-47 |
| Msa1084150 | Msa1361840 | 0.802819 | 4.682120e-49 | -8.615850e-47 |
| Msa1106580 | Msa1361840 | 0.843522 | 1.330414e-58 | -8.615850e-47 |
| Msa0247310 | Msa1361840 | 0.816130 | 6.479581e-52 | -8.615850e-47 |
| Msa0280140 | Msa1361840 | 0.822822 | 1.928041e-53 | -8.615850e-47 |
| Msa0308430 | Msa1361840 | 0.823642 | 1.240882e-53 | -8.615850e-47 |
| Msa1112610 | Msa1361840 | 0.806226 | 9.115501e-50 | -8.615850e-47 |
| Msa1126310 | Msa1361840 | 0.801043 | 1.084773e-48 | -8.615850e-47 |
| Msa1127510 | Msa1361840 | 0.804986 | 1.660109e-49 | -8.615850e-47 |
| Msa1128350 | Msa1361840 | 0.813429 | 2.570653e-51 | -8.615850e-47 |
| Msa1149960 | Msa1361840 | 0.837309 | 5.607190e-57 | -8.615850e-47 |
| Msa1183760 | Msa1361840 | 0.848862 | 4.676582e-60 | -8.615850e-47 |
| Msa0526130 | Msa1361840 | 0.811318 | 7.433055e-51 | -8.615850e-47 |
| Msa0532840 | Msa1361840 | 0.800038 | 1.738291e-48 | -8.615850e-47 |
| Msa0567290 | Msa1361840 | 0.800404 | 1.464122e-48 | -8.615850e-47 |
| Msa0900320 | Msa1361840 | 0.807263 | 5.505124e-50 | -8.615850e-47 |
| Msa0972730 | Msa1361840 | 0.806953 | 6.403999e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361840 | MtrunA17_Chr1g0209071 | 94.477 | 344 | 19 | 0 | 1 | 344 | 1 | 344 | 0.0 | 673 |
| Msa1361840 | MtrunA17_Chr5g0429341 | 47.541 | 122 | 60 | 2 | 1 | 119 | 1 | 121 | 2.97e-31 | 122 |
| Msa1361840 | MtrunA17_Chr3g0120711 | 44.860 | 107 | 57 | 1 | 1 | 105 | 1 | 107 | 3.92e-25 | 105 |
| Msa1361840 | MtrunA17_Chr2g0322941 | 46.154 | 104 | 55 | 1 | 1 | 103 | 40 | 143 | 6.35e-24 | 98.6 |
| Msa1361840 | MtrunA17_Chr7g0268691 | 38.679 | 106 | 63 | 1 | 3 | 106 | 18 | 123 | 1.65e-20 | 91.3 |
| Msa1361840 | MtrunA17_Chr7g0251781 | 33.333 | 117 | 69 | 1 | 1 | 108 | 1 | 117 | 2.36e-17 | 82.4 |
| Msa1361840 | MtrunA17_Chr1g0150471 | 34.146 | 82 | 54 | 0 | 3 | 84 | 4 | 85 | 3.18e-13 | 69.7 |
| Msa1361840 | MtrunA17_Chr3g0136701 | 34.783 | 92 | 57 | 1 | 3 | 91 | 4 | 95 | 3.96e-12 | 65.9 |
| Msa1361840 | MtrunA17_Chr7g0220721 | 37.838 | 74 | 46 | 0 | 3 | 76 | 24 | 97 | 2.23e-11 | 64.7 |
| Msa1361840 | MtrunA17_Chr4g0072871 | 34.146 | 82 | 54 | 0 | 3 | 84 | 20 | 101 | 4.15e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361840 | AT1G68190.1 | 38.535 | 314 | 135 | 8 | 1 | 311 | 10 | 268 | 4.35e-65 | 210 |
| Msa1361840 | AT1G68190.3 | 38.535 | 314 | 135 | 8 | 1 | 311 | 10 | 268 | 4.35e-65 | 210 |
| Msa1361840 | AT1G68190.2 | 38.535 | 314 | 135 | 8 | 1 | 311 | 39 | 297 | 1.27e-64 | 209 |
| Msa1361840 | AT5G48250.1 | 45.455 | 110 | 55 | 1 | 1 | 105 | 1 | 110 | 1.36e-27 | 111 |
| Msa1361840 | AT3G07650.3 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 9.49e-25 | 103 |
| Msa1361840 | AT3G07650.2 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 9.49e-25 | 103 |
| Msa1361840 | AT3G07650.4 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 9.49e-25 | 103 |
| Msa1361840 | AT3G07650.1 | 41.880 | 117 | 56 | 2 | 1 | 105 | 1 | 117 | 9.49e-25 | 103 |
| Msa1361840 | AT2G33500.1 | 39.252 | 107 | 62 | 1 | 5 | 108 | 12 | 118 | 1.53e-22 | 97.8 |
| Msa1361840 | AT2G33500.2 | 39.252 | 107 | 62 | 1 | 5 | 108 | 12 | 118 | 1.56e-22 | 97.8 |
| Msa1361840 | AT1G28050.1 | 38.889 | 108 | 63 | 1 | 5 | 109 | 9 | 116 | 6.43e-22 | 96.3 |
| Msa1361840 | AT3G21880.1 | 42.308 | 104 | 59 | 1 | 1 | 103 | 1 | 104 | 2.18e-21 | 94.4 |
| Msa1361840 | AT3G21880.3 | 42.308 | 104 | 59 | 1 | 1 | 103 | 5 | 108 | 2.19e-21 | 94.4 |
| Msa1361840 | AT3G21880.2 | 42.308 | 104 | 59 | 1 | 1 | 103 | 5 | 108 | 2.19e-21 | 94.4 |
| Msa1361840 | AT2G47890.3 | 38.679 | 106 | 64 | 1 | 2 | 106 | 10 | 115 | 1.99e-20 | 90.5 |
| Msa1361840 | AT2G47890.1 | 38.679 | 106 | 64 | 1 | 2 | 106 | 10 | 115 | 2.71e-20 | 90.5 |
| Msa1361840 | AT2G47890.2 | 38.679 | 106 | 64 | 1 | 2 | 106 | 10 | 115 | 3.51e-20 | 88.6 |
| Msa1361840 | AT4G15250.1 | 37.500 | 104 | 64 | 1 | 1 | 103 | 1 | 104 | 1.34e-19 | 88.6 |
| Msa1361840 | AT5G24930.1 | 40.244 | 82 | 49 | 0 | 3 | 84 | 4 | 85 | 1.70e-14 | 74.3 |
| Msa1361840 | AT3G02380.1 | 39.024 | 82 | 50 | 0 | 3 | 84 | 14 | 95 | 2.18e-13 | 70.9 |
| Msa1361840 | AT5G15840.1 | 37.000 | 100 | 62 | 1 | 3 | 102 | 18 | 116 | 4.69e-13 | 70.1 |
| Msa1361840 | AT5G15850.1 | 41.463 | 82 | 48 | 0 | 3 | 84 | 10 | 91 | 6.50e-13 | 69.3 |
| Msa1361840 | AT5G15840.2 | 37.000 | 100 | 62 | 1 | 3 | 102 | 18 | 116 | 7.34e-13 | 68.6 |
| Msa1361840 | AT2G24790.1 | 35.366 | 82 | 53 | 0 | 3 | 84 | 6 | 87 | 1.18e-12 | 68.2 |
| Msa1361840 | AT2G24790.2 | 35.366 | 82 | 53 | 0 | 3 | 84 | 6 | 87 | 1.88e-12 | 66.2 |
Find 84 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCATGGAGAGTTATTT+TGG | 0.172335 | tig0017635:-53491 | Msa1361840:CDS |
| CCACCAAACATCACTCTAAT+TGG | 0.186429 | tig0017635:+52680 | None:intergenic |
| ACTATGGGGATTTGAATTTA+AGG | 0.203446 | tig0017635:-54490 | Msa1361840:CDS |
| CAAAACTATGAGGAACTATT+TGG | 0.211793 | tig0017635:-52716 | Msa1361840:CDS |
| AGCAGATTGTTGATTTAAAA+AGG | 0.229527 | tig0017635:-53722 | Msa1361840:CDS |
| CAAATAGTTCCTCATAGTTT+TGG | 0.233633 | tig0017635:+52717 | None:intergenic |
| GATCATTCTACAAAGATAAC+TGG | 0.292316 | tig0017635:-53678 | Msa1361840:CDS |
| TTCTTTACTTTCTCTTGGAT+TGG | 0.300222 | tig0017635:-55733 | Msa1361840:five_prime_UTR |
| CCATAGTGTTGCAAACTCTT+TGG | 0.316623 | tig0017635:+54506 | None:intergenic |
| CGATCTGTCAAATCTTTCAT+TGG | 0.318044 | tig0017635:-54540 | Msa1361840:CDS |
| CCAAAGAGTTTGCAACACTA+TGG | 0.332185 | tig0017635:-54506 | Msa1361840:CDS |
| AAATTACATTTGAATGCTTT+CGG | 0.333038 | tig0017635:+52246 | None:intergenic |
| ATTTCCATGACCAACAATAA+TGG | 0.336940 | tig0017635:+52275 | None:intergenic |
| ATCACTTCTTTACTTTCTCT+TGG | 0.349382 | tig0017635:-55738 | Msa1361840:five_prime_UTR |
| AGACGTCTCTTATTCTTCAT+TGG | 0.353797 | tig0017635:-52654 | Msa1361840:CDS |
| ATGTTTATCTTGTTTGTAAA+GGG | 0.368146 | tig0017635:+55759 | None:intergenic |
| TTCTTGTTGTCCATTATTGT+TGG | 0.381018 | tig0017635:-52285 | Msa1361840:three_prime_UTR |
| AATTGTCCGGCCGGCACCTC+CGG | 0.395024 | tig0017635:-54683 | Msa1361840:CDS |
| AATTAGACCTCCATTGTACT+TGG | 0.396036 | tig0017635:+52593 | None:intergenic |
| TTTGTCTTCATCTTCAGTTA+TGG | 0.410820 | tig0017635:-53520 | Msa1361840:CDS |
| TTGTAGATGCCATTTGCATC+AGG | 0.416030 | tig0017635:+54871 | None:intergenic |
| AAGTCTACAACTAAAGGAAA+TGG | 0.417116 | tig0017635:-54811 | Msa1361840:exon |
| AAATGTAATTTGAATTAGAA+AGG | 0.419682 | tig0017635:-52234 | Msa1361840:three_prime_UTR |
| CCAATGGACCTTTGCATCAC+AGG | 0.442091 | tig0017635:+54713 | None:intergenic |
| TGGAATGTTAAGTCAACGTC+AGG | 0.452059 | tig0017635:+52737 | None:intergenic |
| GATCCAATTAGAGTGATGTT+TGG | 0.455146 | tig0017635:-52683 | Msa1361840:CDS |
| GTCTGGTGACAATCATGATA+AGG | 0.459630 | tig0017635:-54358 | Msa1361840:CDS |
| TCAGTCACTTCAACGACGTC+TGG | 0.463294 | tig0017635:-54375 | Msa1361840:CDS |
| CTCTTATTCTTCATTGGAGA+AGG | 0.464404 | tig0017635:-52648 | Msa1361840:CDS |
| GAAGAATAAACATTATGTTC+AGG | 0.471002 | tig0017635:-52427 | Msa1361840:three_prime_UTR |
| GATGTTTATCTTGTTTGTAA+AGG | 0.472684 | tig0017635:+55758 | None:intergenic |
| TGTTTGAAGTCTACAACTAA+AGG | 0.472949 | tig0017635:-54817 | Msa1361840:five_prime_UTR |
| TTGTCCATTATTGTTGGTCA+TGG | 0.480987 | tig0017635:-52279 | Msa1361840:three_prime_UTR |
| CATTGGGCAAATGAATTGTC+CGG | 0.481757 | tig0017635:-54696 | Msa1361840:CDS |
| TACCTGACCTAGTTGACTGC+TGG | 0.483505 | tig0017635:+54332 | None:intergenic |
| ACACAAGGGTCCGGAGGTGC+CGG | 0.485126 | tig0017635:+54673 | None:intergenic |
| CAAAGAGTTTGCAACACTAT+GGG | 0.487640 | tig0017635:-54505 | Msa1361840:CDS |
| TCTGGTGACAATCATGATAA+GGG | 0.492151 | tig0017635:-54357 | Msa1361840:CDS |
| CTGTGATGCAAAGGTCCATT+GGG | 0.492787 | tig0017635:-54712 | Msa1361840:CDS |
| CTTAACATTCCAAAACTATG+AGG | 0.496040 | tig0017635:-52726 | Msa1361840:CDS |
| ATCCAGCAGTCAACTAGGTC+AGG | 0.498273 | tig0017635:-54334 | Msa1361840:intron |
| GAGATTTCTCCTGATGCAAA+TGG | 0.501748 | tig0017635:-54880 | Msa1361840:five_prime_UTR |
| GTTATGGACCTTCCCTTGCA+TGG | 0.501977 | tig0017635:-53504 | Msa1361840:CDS |
| CTTACAACTTCTATCAAAAG+AGG | 0.502880 | tig0017635:-52362 | Msa1361840:three_prime_UTR |
| TGATAATTAAAGTGCTTGAT+CGG | 0.503663 | tig0017635:-52542 | Msa1361840:three_prime_UTR |
| CCTGTGATGCAAAGGTCCAT+TGG | 0.506685 | tig0017635:-54713 | Msa1361840:CDS |
| TGGGAGAAGACAATTCTATC+GGG | 0.510510 | tig0017635:-53590 | Msa1361840:CDS |
| CTGGGAGAAGACAATTCTAT+CGG | 0.513285 | tig0017635:-53591 | Msa1361840:CDS |
| TGCGATCAAAAGCTACATGA+TGG | 0.526346 | tig0017635:-54582 | Msa1361840:CDS |
| CCAAAATAACTCTCCATGCA+AGG | 0.527678 | tig0017635:+53491 | None:intergenic |
| CCAATTAGAGTGATGTTTGG+TGG | 0.535280 | tig0017635:-52680 | Msa1361840:CDS |
| TCTTGCGTATGTTCAGTGCT+TGG | 0.538169 | tig0017635:-54631 | Msa1361840:CDS |
| ACGAGTTACACACAAGGGTC+CGG | 0.543558 | tig0017635:+54664 | None:intergenic |
| CAAGTTCTTCACATATTCCC+AGG | 0.546412 | tig0017635:+52783 | None:intergenic |
| TGAAAACAGTGTCGATCAGA+AGG | 0.550060 | tig0017635:-54463 | Msa1361840:CDS |
| GTTTCAGCTAATAGAAGAGA+GGG | 0.550624 | tig0017635:-53700 | Msa1361840:CDS |
| AACTATGAGGAACTATTTGG+AGG | 0.557150 | tig0017635:-52713 | Msa1361840:CDS |
| CGGACAATTCATTTGCCCAA+TGG | 0.558043 | tig0017635:+54697 | None:intergenic |
| GTTGCAAACTCTTTGGCAGA+AGG | 0.563765 | tig0017635:+54513 | None:intergenic |
| AAGGGATCCAGCAGTCAACT+AGG | 0.570420 | tig0017635:-54339 | Msa1361840:CDS |
| GCAGCAAAATATTCAAGACC+TGG | 0.572888 | tig0017635:-52801 | Msa1361840:CDS |
| TTGTCTATCCTGTGATGCAA+AGG | 0.577128 | tig0017635:-54721 | Msa1361840:CDS |
| CAAAATAACTCTCCATGCAA+GGG | 0.584415 | tig0017635:+53492 | None:intergenic |
| AAGGGTCCGGAGGTGCCGGC+CGG | 0.586330 | tig0017635:+54677 | None:intergenic |
| AAAGATAACTGGGCTACAAG+TGG | 0.592394 | tig0017635:-53667 | Msa1361840:CDS |
| GGGCAAATGAATTGTCCGGC+CGG | 0.594066 | tig0017635:-54692 | Msa1361840:CDS |
| CTGATTCTTATGATCGAAAG+CGG | 0.599433 | tig0017635:-52498 | Msa1361840:three_prime_UTR |
| ATAACTCTCCATGCAAGGGA+AGG | 0.600276 | tig0017635:+53496 | None:intergenic |
| CAGCAAAATATTCAAGACCT+GGG | 0.612414 | tig0017635:-52800 | Msa1361840:CDS |
| ATCATTCTACAAAGATAACT+GGG | 0.615835 | tig0017635:-53677 | Msa1361840:CDS |
| GCGATCAAAAGCTACATGAT+GGG | 0.617031 | tig0017635:-54581 | Msa1361840:CDS |
| GGTTTCAGCTAATAGAAGAG+AGG | 0.617889 | tig0017635:-53701 | Msa1361840:CDS |
| AAAGAGTTTGCAACACTATG+GGG | 0.619686 | tig0017635:-54504 | Msa1361840:CDS |
| TTAATTATCAATTCACTGAG+AGG | 0.633365 | tig0017635:+52555 | None:intergenic |
| TATTGACAATCCAAGTACAA+TGG | 0.635806 | tig0017635:-52603 | Msa1361840:CDS |
| TCAGCATTACAGTAAACAAG+TGG | 0.650082 | tig0017635:+54756 | None:intergenic |
| TTGACAGATCGTTTGCGATG+TGG | 0.663808 | tig0017635:+54552 | None:intergenic |
| TGACAATCCAAGTACAATGG+AGG | 0.672160 | tig0017635:-52600 | Msa1361840:CDS |
| AGTTACACACAAGGGTCCGG+AGG | 0.682408 | tig0017635:+54667 | None:intergenic |
| AAGTTCACTACAAAGTAACC+AGG | 0.683289 | tig0017635:-53460 | Msa1361840:intron |
| GGGAGAAGACAATTCTATCG+GGG | 0.687222 | tig0017635:-53589 | Msa1361840:CDS |
| AACAGCACGAGTTACACACA+AGG | 0.692236 | tig0017635:+54658 | None:intergenic |
| TTGCATCACAGGATAGACAA+AGG | 0.703130 | tig0017635:+54724 | None:intergenic |
| ACAGCACGAGTTACACACAA+GGG | 0.726480 | tig0017635:+54659 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTTTATTCTTGATT+AGG | + | tig0017635:54752-54771 | None:intergenic | 10.0% |
| !!! | TTAAAAAGTTTTGTAAACAA+TGG | - | tig0017635:52816-52835 | Msa1361840:intron | 15.0% |
| !!! | TAAAAAGTTTTGTAAACAAT+GGG | - | tig0017635:52817-52836 | Msa1361840:intron | 15.0% |
| !! | AAATCTAAATATATTTCCAA+AGG | + | tig0017635:54584-54603 | None:intergenic | 15.0% |
| !!! | TTGGAAATATATTTAGATTT+TGG | - | tig0017635:54584-54603 | Msa1361840:CDS | 15.0% |
| !! | ATATTAAAATATACCCTATA+TGG | - | tig0017635:54665-54684 | Msa1361840:CDS | 15.0% |
| !! | TATTAAAATATACCCTATAT+GGG | - | tig0017635:54666-54685 | Msa1361840:CDS | 15.0% |
| !! | ATAAAAATAAATTCATACTC+TGG | - | tig0017635:54760-54779 | Msa1361840:CDS | 15.0% |
| !! | AAATGTAATTTGAATTAGAA+AGG | - | tig0017635:55717-55736 | Msa1361840:five_prime_UTR | 15.0% |
| !!! | ATGTTTATCTTGTTTGTAAA+GGG | + | tig0017635:52195-52214 | None:intergenic | 20.0% |
| !!! | GATTTTTAGTATACAATCAT+AGG | - | tig0017635:52279-52298 | Msa1361840:three_prime_UTR | 20.0% |
| !!! | TTGAATCACTTTTTCTTTTA+TGG | - | tig0017635:52887-52906 | Msa1361840:intron | 20.0% |
| !! | TTTATCTTCTCATAAATGAT+TGG | - | tig0017635:53731-53750 | Msa1361840:CDS | 20.0% |
| !!! | TGTGGTTTTGATAATTAATA+TGG | + | tig0017635:54107-54126 | None:intergenic | 20.0% |
| !!! | GTGTTTTTAAGATTATTAGT+TGG | + | tig0017635:54628-54647 | None:intergenic | 20.0% |
| !! | ATAAGATATCACAGAAATTA+AGG | - | tig0017635:54789-54808 | Msa1361840:CDS | 20.0% |
| !!! | ATTGTTTAGTATTGAACATT+AGG | - | tig0017635:55067-55086 | Msa1361840:intron | 20.0% |
| !!! | TTATGTATGACTAATTTTGA+AGG | - | tig0017635:55483-55502 | Msa1361840:intron | 20.0% |
| !! | AAATTACATTTGAATGCTTT+CGG | + | tig0017635:55708-55727 | None:intergenic | 20.0% |
| !! | GATGTTTATCTTGTTTGTAA+AGG | + | tig0017635:52196-52215 | None:intergenic | 25.0% |
| !! | TGATGTAGATTTTCAAATCT+GGG | - | tig0017635:52419-52438 | Msa1361840:three_prime_UTR | 25.0% |
| ! | CTACTTTGTTGAAATTCAAA+TGG | - | tig0017635:52496-52515 | Msa1361840:three_prime_UTR | 25.0% |
| !! | GGTCTTAATAATTGTTGTTA+TGG | - | tig0017635:52934-52953 | Msa1361840:intron | 25.0% |
| !!! | TGCAACTATATTTGTTGTAA+AGG | - | tig0017635:52970-52989 | Msa1361840:intron | 25.0% |
| ! | TATAGATTTCATCAGTGATA+AGG | + | tig0017635:53670-53689 | None:intergenic | 25.0% |
| !! | TGTAAATCATTTTCTAACTC+TGG | + | tig0017635:53819-53838 | None:intergenic | 25.0% |
| ! | ATTATCTTCATCCAAAATCT+TGG | - | tig0017635:53905-53924 | Msa1361840:intron | 25.0% |
| ! | TTATCTTCATCCAAAATCTT+GGG | - | tig0017635:53906-53925 | Msa1361840:intron | 25.0% |
| ! | GAATGCATTAATCATTTCTT+CGG | + | tig0017635:53936-53955 | None:intergenic | 25.0% |
| ! | GATTAATGCATTCTTAACTA+AGG | - | tig0017635:53943-53962 | Msa1361840:intron | 25.0% |
| ! | GTACTTTAACTAACACTTTA+AGG | + | tig0017635:54010-54029 | None:intergenic | 25.0% |
| !!! | AGCAGATTGTTGATTTAAAA+AGG | - | tig0017635:54229-54248 | Msa1361840:intron | 25.0% |
| ! | ATCATTCTACAAAGATAACT+GGG | - | tig0017635:54274-54293 | Msa1361840:intron | 25.0% |
| ! | AAATGCAGAAGAAAAAGTTT+CGG | + | tig0017635:54397-54416 | None:intergenic | 25.0% |
| ! | AAAGGAAACATACATTATGT+GGG | - | tig0017635:54552-54571 | Msa1361840:CDS | 25.0% |
| !!! | TTTAGATTTTGGTGTAGAAT+AGG | - | tig0017635:54595-54614 | Msa1361840:CDS | 25.0% |
| ! | TCATTTGAATTTCCCATATA+GGG | + | tig0017635:54681-54700 | None:intergenic | 25.0% |
| ! | ATCATTTGAATTTCCCATAT+AGG | + | tig0017635:54682-54701 | None:intergenic | 25.0% |
| !! | CTTTTATTATCAGAATTGGA+AGG | + | tig0017635:54705-54724 | None:intergenic | 25.0% |
| ! | CTTCCAATTCTGATAATAAA+AGG | - | tig0017635:54703-54722 | Msa1361840:CDS | 25.0% |
| !! | GTTCCTTTTATTATCAGAAT+TGG | + | tig0017635:54709-54728 | None:intergenic | 25.0% |
| ! | AAGGGTTAAAGTATGTAATA+GGG | + | tig0017635:54857-54876 | None:intergenic | 25.0% |
| ! | AAGTTTAAATAAATGTCTGC+TGG | + | tig0017635:54987-55006 | None:intergenic | 25.0% |
| ! | TTAATTATCAATTCACTGAG+AGG | + | tig0017635:55399-55418 | None:intergenic | 25.0% |
| !! | TGATAATTAAAGTGCTTGAT+CGG | - | tig0017635:55409-55428 | Msa1361840:intron | 25.0% |
| !! | CAGATGATGATTTTCTATTA+TGG | + | tig0017635:55436-55455 | None:intergenic | 25.0% |
| ! | GAAGAATAAACATTATGTTC+AGG | - | tig0017635:55524-55543 | Msa1361840:intron | 25.0% |
| ! | ACATTATGTTCAGGAAAAAA+AGG | - | tig0017635:55533-55552 | Msa1361840:intron | 25.0% |
| !! | TCTTGAATGCAACAATTTTT+CGG | + | tig0017635:55754-55773 | None:intergenic | 25.0% |
| ATCACTTCTTTACTTTCTCT+TGG | - | tig0017635:52213-52232 | Msa1361840:three_prime_UTR | 30.0% | |
| TTCTTTACTTTCTCTTGGAT+TGG | - | tig0017635:52218-52237 | Msa1361840:three_prime_UTR | 30.0% | |
| ATCAGTGGAAATTTAGAAGT+AGG | + | tig0017635:52403-52422 | None:intergenic | 30.0% | |
| GATTTGAAAATCTACATCAG+TGG | + | tig0017635:52418-52437 | None:intergenic | 30.0% | |
| ! | CTGATGTAGATTTTCAAATC+TGG | - | tig0017635:52418-52437 | Msa1361840:three_prime_UTR | 30.0% |
| GATAGTGTATTATTAGCACA+TGG | + | tig0017635:52473-52492 | None:intergenic | 30.0% | |
| TGGTGTCTAAATAATTTCGT+GGG | + | tig0017635:52524-52543 | None:intergenic | 30.0% | |
| ! | CATTGATGATATATGAGTGA+TGG | - | tig0017635:52702-52721 | Msa1361840:CDS | 30.0% |
| ATGGTTAGTATGATAGTATG+TGG | - | tig0017635:52721-52740 | Msa1361840:CDS | 30.0% | |
| TCTCAGATAACTGTTCAAAA+CGG | - | tig0017635:52913-52932 | Msa1361840:intron | 30.0% | |
| !! | TCTATTAACTCCACTTTTCA+TGG | - | tig0017635:53019-53038 | Msa1361840:intron | 30.0% |
| ! | TGTTTGAAGTCTACAACTAA+AGG | - | tig0017635:53134-53153 | Msa1361840:intron | 30.0% |
| AAGTCTACAACTAAAGGAAA+TGG | - | tig0017635:53140-53159 | Msa1361840:intron | 30.0% | |
| ACTATGGGGATTTGAATTTA+AGG | - | tig0017635:53461-53480 | Msa1361840:CDS | 30.0% | |
| ! | GATTTTGGATGAAGATAATG+TGG | + | tig0017635:53904-53923 | None:intergenic | 30.0% |
| AAGGAGTTCGTAACAATTAT+AGG | - | tig0017635:53962-53981 | Msa1361840:intron | 30.0% | |
| AGTTCGTAACAATTATAGGA+AGG | - | tig0017635:53966-53985 | Msa1361840:intron | 30.0% | |
| !! | AAGTACGATGATTCTTGTTT+TGG | - | tig0017635:54024-54043 | Msa1361840:intron | 30.0% |
| !!! | GATTCTTGTTTTGGTTTCTA+AGG | - | tig0017635:54033-54052 | Msa1361840:intron | 30.0% |
| TATCAAAACCACAAGTACAA+TGG | - | tig0017635:54114-54133 | Msa1361840:intron | 30.0% | |
| GATCATTCTACAAAGATAAC+TGG | - | tig0017635:54273-54292 | Msa1361840:intron | 30.0% | |
| ! | TATTTTGCTACTAATCTGCT+GGG | - | tig0017635:54342-54361 | Msa1361840:CDS | 30.0% |
| AATGCAGAAGAAAAAGTTTC+GGG | + | tig0017635:54396-54415 | None:intergenic | 30.0% | |
| TTTGTCTTCATCTTCAGTTA+TGG | - | tig0017635:54431-54450 | Msa1361840:CDS | 30.0% | |
| TGTATGTTTCCTTTCAATTG+TGG | + | tig0017635:54546-54565 | None:intergenic | 30.0% | |
| GAAAGGAAACATACATTATG+TGG | - | tig0017635:54551-54570 | Msa1361840:CDS | 30.0% | |
| AAGGAAACATACATTATGTG+GGG | - | tig0017635:54553-54572 | Msa1361840:CDS | 30.0% | |
| AGAGGGATTGATCAAAATAA+TGG | + | tig0017635:54831-54850 | None:intergenic | 30.0% | |
| AGGGTTAAAGTATGTAATAG+GGG | + | tig0017635:54856-54875 | None:intergenic | 30.0% | |
| CAAGGGTTAAAGTATGTAAT+AGG | + | tig0017635:54858-54877 | None:intergenic | 30.0% | |
| ! | GTTTTACTTCTAGTCAAAAG+TGG | - | tig0017635:55096-55115 | Msa1361840:intron | 30.0% |
| TTTGTTGATGTTTGCAGTTA+TGG | - | tig0017635:55128-55147 | Msa1361840:intron | 30.0% | |
| CTTAACATTCCAAAACTATG+AGG | - | tig0017635:55225-55244 | Msa1361840:intron | 30.0% | |
| ! | CAAATAGTTCCTCATAGTTT+TGG | + | tig0017635:55237-55256 | None:intergenic | 30.0% |
| CAAAACTATGAGGAACTATT+TGG | - | tig0017635:55235-55254 | Msa1361840:intron | 30.0% | |
| TATTGACAATCCAAGTACAA+TGG | - | tig0017635:55348-55367 | Msa1361840:intron | 30.0% | |
| CTTACAACTTCTATCAAAAG+AGG | - | tig0017635:55589-55608 | Msa1361840:intron | 30.0% | |
| ! | TTCTTGTTGTCCATTATTGT+TGG | - | tig0017635:55666-55685 | Msa1361840:intron | 30.0% |
| ATTTCCATGACCAACAATAA+TGG | + | tig0017635:55679-55698 | None:intergenic | 30.0% | |
| GAGAAAAAAAGTGAGAGAGA+TGG | + | tig0017635:52251-52270 | None:intergenic | 35.0% | |
| TTCAAATCTGGGCATATGTA+TGG | - | tig0017635:52430-52449 | Msa1361840:three_prime_UTR | 35.0% | |
| GTATTATTAGCACATGGAAG+TGG | + | tig0017635:52467-52486 | None:intergenic | 35.0% | |
| GTGGTGTCTAAATAATTTCG+TGG | + | tig0017635:52525-52544 | None:intergenic | 35.0% | |
| CAAGTCTCGCTAAATTTATG+TGG | + | tig0017635:52544-52563 | None:intergenic | 35.0% | |
| TTCTCAACACACACTCAAAT+TGG | + | tig0017635:52579-52598 | None:intergenic | 35.0% | |
| TTACATGTACGACATTGTGT+CGG | - | tig0017635:52674-52693 | Msa1361840:CDS | 35.0% | |
| TGTCAGATTTCCCATTGAAT+TGG | - | tig0017635:52841-52860 | Msa1361840:intron | 35.0% | |
| TCCTATAGCTCCAATTCAAT+GGG | + | tig0017635:52854-52873 | None:intergenic | 35.0% | |
| TCAGCATTACAGTAAACAAG+TGG | + | tig0017635:53198-53217 | None:intergenic | 35.0% | |
| CGATCTGTCAAATCTTTCAT+TGG | - | tig0017635:53411-53430 | Msa1361840:intron | 35.0% | |
| CAAAGAGTTTGCAACACTAT+GGG | - | tig0017635:53446-53465 | Msa1361840:intron | 35.0% | |
| AAAGAGTTTGCAACACTATG+GGG | - | tig0017635:53447-53466 | Msa1361840:intron | 35.0% | |
| TCTGGTGACAATCATGATAA+GGG | - | tig0017635:53594-53613 | Msa1361840:CDS | 35.0% | |
| AGATTTCATCAGTGATAAGG+AGG | + | tig0017635:53667-53686 | None:intergenic | 35.0% | |
| ! | TTTTATGCTGATCACAGCAT+TGG | - | tig0017635:53840-53859 | Msa1361840:intron | 35.0% |
| GTTTCAGCTAATAGAAGAGA+GGG | - | tig0017635:54251-54270 | Msa1361840:intron | 35.0% | |
| ! | GTATTTTGCTACTAATCTGC+TGG | - | tig0017635:54341-54360 | Msa1361840:CDS | 35.0% |
| ATGCAGAAGAAAAAGTTTCG+GGG | + | tig0017635:54395-54414 | None:intergenic | 35.0% | |
| CAAAATAACTCTCCATGCAA+GGG | + | tig0017635:54462-54481 | None:intergenic | 35.0% | |
| AAGTTCACTACAAAGTAACC+AGG | - | tig0017635:54491-54510 | Msa1361840:CDS | 35.0% | |
| TTAGGATTACTTGACGCTTA+AGG | + | tig0017635:54734-54753 | None:intergenic | 35.0% | |
| GGGTTAAAGTATGTAATAGG+GGG | + | tig0017635:54855-54874 | None:intergenic | 35.0% | |
| GAAATCATCTCGACAAACAA+GGG | + | tig0017635:54875-54894 | None:intergenic | 35.0% | |
| TGAAATCATCTCGACAAACA+AGG | + | tig0017635:54876-54895 | None:intergenic | 35.0% | |
| GACTATTGAAGTCAAATGTC+AGG | + | tig0017635:54904-54923 | None:intergenic | 35.0% | |
| ! | GACATTTGACTTCAATAGTC+TGG | - | tig0017635:54904-54923 | Msa1361840:intron | 35.0% |
| CTGTTTGATTAATGTGTGCA+AGG | + | tig0017635:54938-54957 | None:intergenic | 35.0% | |
| CAGCAAAATATTCAAGACCT+GGG | - | tig0017635:55151-55170 | Msa1361840:intron | 35.0% | |
| AACTATGAGGAACTATTTGG+AGG | - | tig0017635:55238-55257 | Msa1361840:intron | 35.0% | |
| GATCCAATTAGAGTGATGTT+TGG | - | tig0017635:55268-55287 | Msa1361840:intron | 35.0% | |
| AGACGTCTCTTATTCTTCAT+TGG | - | tig0017635:55297-55316 | Msa1361840:intron | 35.0% | |
| CTCTTATTCTTCATTGGAGA+AGG | - | tig0017635:55303-55322 | Msa1361840:intron | 35.0% | |
| AATTAGACCTCCATTGTACT+TGG | + | tig0017635:55361-55380 | None:intergenic | 35.0% | |
| CTGATTCTTATGATCGAAAG+CGG | - | tig0017635:55453-55472 | Msa1361840:intron | 35.0% | |
| TTGTCCATTATTGTTGGTCA+TGG | - | tig0017635:55672-55691 | Msa1361840:intron | 35.0% | |
| TTTATGGGAGTTAAGAGTCG+TGG | - | tig0017635:52377-52396 | Msa1361840:three_prime_UTR | 40.0% | |
| TCCCATTGAATTGGAGCTAT+AGG | - | tig0017635:52850-52869 | Msa1361840:intron | 40.0% | |
| CTCCTATAGCTCCAATTCAA+TGG | + | tig0017635:52855-52874 | None:intergenic | 40.0% | |
| TGAATTGGAGCTATAGGAGT+TGG | - | tig0017635:52856-52875 | Msa1361840:intron | 40.0% | |
| CCTGTTTAGTCCATGAAAAG+TGG | + | tig0017635:53032-53051 | None:intergenic | 40.0% | |
| !! | CCACTTTTCATGGACTAAAC+AGG | - | tig0017635:53029-53048 | Msa1361840:intron | 40.0% |
| GAGATTTCTCCTGATGCAAA+TGG | - | tig0017635:53071-53090 | Msa1361840:intron | 40.0% | |
| ! | TTGTAGATGCCATTTGCATC+AGG | + | tig0017635:53083-53102 | None:intergenic | 40.0% |
| ! | GTGAATTTTGCACAGCATTG+AGG | - | tig0017635:53172-53191 | Msa1361840:intron | 40.0% |
| TTGCATCACAGGATAGACAA+AGG | + | tig0017635:53230-53249 | None:intergenic | 40.0% | |
| TTGTCTATCCTGTGATGCAA+AGG | - | tig0017635:53230-53249 | Msa1361840:intron | 40.0% | |
| CATTGGGCAAATGAATTGTC+CGG | - | tig0017635:53255-53274 | Msa1361840:intron | 40.0% | |
| TGCGATCAAAAGCTACATGA+TGG | - | tig0017635:53369-53388 | Msa1361840:intron | 40.0% | |
| GCGATCAAAAGCTACATGAT+GGG | - | tig0017635:53370-53389 | Msa1361840:intron | 40.0% | |
| CCATAGTGTTGCAAACTCTT+TGG | + | tig0017635:53448-53467 | None:intergenic | 40.0% | |
| CCAAAGAGTTTGCAACACTA+TGG | - | tig0017635:53445-53464 | Msa1361840:intron | 40.0% | |
| !! | TGAAAACAGTGTCGATCAGA+AGG | - | tig0017635:53488-53507 | Msa1361840:CDS | 40.0% |
| GTCTGGTGACAATCATGATA+AGG | - | tig0017635:53593-53612 | Msa1361840:CDS | 40.0% | |
| ATGAAGCGATGAATCTTGTG+AGG | - | tig0017635:53759-53778 | Msa1361840:CDS | 40.0% | |
| TGAAGATAATGTGGATGTGG+AGG | + | tig0017635:53895-53914 | None:intergenic | 40.0% | |
| GGATGAAGATAATGTGGATG+TGG | + | tig0017635:53898-53917 | None:intergenic | 40.0% | |
| ! | CTTCGGTTTTCCCAAGATTT+TGG | + | tig0017635:53919-53938 | None:intergenic | 40.0% |
| CAAAACCACAAGTACAATGG+AGG | - | tig0017635:54117-54136 | Msa1361840:intron | 40.0% | |
| GGTTTCAGCTAATAGAAGAG+AGG | - | tig0017635:54250-54269 | Msa1361840:intron | 40.0% | |
| AAAGATAACTGGGCTACAAG+TGG | - | tig0017635:54284-54303 | Msa1361840:intron | 40.0% | |
| CTGGGAGAAGACAATTCTAT+CGG | - | tig0017635:54360-54379 | Msa1361840:CDS | 40.0% | |
| TGGGAGAAGACAATTCTATC+GGG | - | tig0017635:54361-54380 | Msa1361840:CDS | 40.0% | |
| CCAAAATAACTCTCCATGCA+AGG | + | tig0017635:54463-54482 | None:intergenic | 40.0% | |
| ! | CCTTGCATGGAGAGTTATTT+TGG | - | tig0017635:54460-54479 | Msa1361840:CDS | 40.0% |
| GGATAGATAAGTATCTGACC+TGG | + | tig0017635:54512-54531 | None:intergenic | 40.0% | |
| TGTTGTGAGCCACAATTGAA+AGG | - | tig0017635:54534-54553 | Msa1361840:CDS | 40.0% | |
| ATTATGTGGGGTACATCCTT+TGG | - | tig0017635:54565-54584 | Msa1361840:CDS | 40.0% | |
| GCAGCAAAATATTCAAGACC+TGG | - | tig0017635:55150-55169 | Msa1361840:intron | 40.0% | |
| CAAGTTCTTCACATATTCCC+AGG | + | tig0017635:55171-55190 | None:intergenic | 40.0% | |
| TGGAATGTTAAGTCAACGTC+AGG | + | tig0017635:55217-55236 | None:intergenic | 40.0% | |
| CCACCAAACATCACTCTAAT+TGG | + | tig0017635:55274-55293 | None:intergenic | 40.0% | |
| CCAATTAGAGTGATGTTTGG+TGG | - | tig0017635:55271-55290 | Msa1361840:intron | 40.0% | |
| TGACAATCCAAGTACAATGG+AGG | - | tig0017635:55351-55370 | Msa1361840:intron | 40.0% | |
| CTGTGATGCAAAGGTCCATT+GGG | - | tig0017635:53239-53258 | Msa1361840:intron | 45.0% | |
| CGGACAATTCATTTGCCCAA+TGG | + | tig0017635:53257-53276 | None:intergenic | 45.0% | |
| ACAGCACGAGTTACACACAA+GGG | + | tig0017635:53295-53314 | None:intergenic | 45.0% | |
| AACAGCACGAGTTACACACA+AGG | + | tig0017635:53296-53315 | None:intergenic | 45.0% | |
| TCTTGCGTATGTTCAGTGCT+TGG | - | tig0017635:53320-53339 | Msa1361840:intron | 45.0% | |
| TTGACAGATCGTTTGCGATG+TGG | + | tig0017635:53402-53421 | None:intergenic | 45.0% | |
| GTTGCAAACTCTTTGGCAGA+AGG | + | tig0017635:53441-53460 | None:intergenic | 45.0% | |
| AAGCGATGAATCTTGTGAGG+AGG | - | tig0017635:53762-53781 | Msa1361840:CDS | 45.0% | |
| TCAGACCTCCATTGTACTTG+TGG | + | tig0017635:54125-54144 | None:intergenic | 45.0% | |
| GGGAGAAGACAATTCTATCG+GGG | - | tig0017635:54362-54381 | Msa1361840:CDS | 45.0% | |
| ATAACTCTCCATGCAAGGGA+AGG | + | tig0017635:54458-54477 | None:intergenic | 45.0% | |
| TCAATTGTGGCTCACAACAG+TGG | + | tig0017635:54533-54552 | None:intergenic | 45.0% | |
| AGTATGTAATAGGGGGCAGA+GGG | + | tig0017635:54848-54867 | None:intergenic | 45.0% | |
| AAGTATGTAATAGGGGGCAG+AGG | + | tig0017635:54849-54868 | None:intergenic | 45.0% | |
| !!! | ACTATTTATTTTTATTTTTA+TGG | - | tig0017635:52361-52380 | Msa1361840:three_prime_UTR | 5.0% |
| !!! | CTATTTATTTTTATTTTTAT+GGG | - | tig0017635:52362-52381 | Msa1361840:three_prime_UTR | 5.0% |
| !!! | TTTAAAATAATATTTTAACA+TGG | + | tig0017635:55785-55804 | None:intergenic | 5.0% |
| CCAATGGACCTTTGCATCAC+AGG | + | tig0017635:53241-53260 | None:intergenic | 50.0% | |
| CCTGTGATGCAAAGGTCCAT+TGG | - | tig0017635:53238-53257 | Msa1361840:intron | 50.0% | |
| ACGAGTTACACACAAGGGTC+CGG | + | tig0017635:53290-53309 | None:intergenic | 50.0% | |
| TCAGTCACTTCAACGACGTC+TGG | - | tig0017635:53576-53595 | Msa1361840:CDS | 50.0% | |
| AAGGGATCCAGCAGTCAACT+AGG | - | tig0017635:53612-53631 | Msa1361840:CDS | 50.0% | |
| ATCCAGCAGTCAACTAGGTC+AGG | - | tig0017635:53617-53636 | Msa1361840:CDS | 50.0% | |
| TACCTGACCTAGTTGACTGC+TGG | + | tig0017635:53622-53641 | None:intergenic | 50.0% | |
| ! | GATGTGGAGGCTCGCATTTT+AGG | + | tig0017635:53882-53901 | None:intergenic | 50.0% |
| GTTATGGACCTTCCCTTGCA+TGG | - | tig0017635:54447-54466 | Msa1361840:CDS | 50.0% | |
| GGGCAAATGAATTGTCCGGC+CGG | - | tig0017635:53259-53278 | Msa1361840:intron | 55.0% | |
| AGTTACACACAAGGGTCCGG+AGG | + | tig0017635:53287-53306 | None:intergenic | 55.0% | |
| ! | GTGGAGGCTCGCATTTTAGG+AGG | + | tig0017635:53879-53898 | None:intergenic | 55.0% |
| AATTGTCCGGCCGGCACCTC+CGG | - | tig0017635:53268-53287 | Msa1361840:intron | 65.0% | |
| ! | ACACAAGGGTCCGGAGGTGC+CGG | + | tig0017635:53281-53300 | None:intergenic | 65.0% |
| !! | AAGGGTCCGGAGGTGCCGGC+CGG | + | tig0017635:53277-53296 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017635 | gene | 52152 | 55821 | 52152 | ID=Msa1361840;Name=Msa1361840 |
| tig0017635 | mRNA | 52152 | 55821 | 52152 | ID=Msa1361840-mRNA-1;Parent=Msa1361840;Name=Msa1361840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=257|1|1|1|0.66|0.75|4|443|344 |
| tig0017635 | exon | 52152 | 52828 | 52152 | ID=Msa1361840-mRNA-1:exon:12687;Parent=Msa1361840-mRNA-1 |
| tig0017635 | exon | 53461 | 53781 | 53461 | ID=Msa1361840-mRNA-1:exon:12686;Parent=Msa1361840-mRNA-1 |
| tig0017635 | exon | 54335 | 54922 | 54335 | ID=Msa1361840-mRNA-1:exon:12685;Parent=Msa1361840-mRNA-1 |
| tig0017635 | exon | 55673 | 55821 | 55673 | ID=Msa1361840-mRNA-1:exon:12684;Parent=Msa1361840-mRNA-1 |
| tig0017635 | five_prime_UTR | 55673 | 55821 | 55673 | ID=Msa1361840-mRNA-1:five_prime_utr;Parent=Msa1361840-mRNA-1 |
| tig0017635 | five_prime_UTR | 54815 | 54922 | 54815 | ID=Msa1361840-mRNA-1:five_prime_utr;Parent=Msa1361840-mRNA-1 |
| tig0017635 | CDS | 54335 | 54814 | 54335 | ID=Msa1361840-mRNA-1:cds;Parent=Msa1361840-mRNA-1 |
| tig0017635 | CDS | 53461 | 53781 | 53461 | ID=Msa1361840-mRNA-1:cds;Parent=Msa1361840-mRNA-1 |
| tig0017635 | CDS | 52595 | 52828 | 52595 | ID=Msa1361840-mRNA-1:cds;Parent=Msa1361840-mRNA-1 |
| tig0017635 | three_prime_UTR | 52152 | 52594 | 52152 | ID=Msa1361840-mRNA-1:three_prime_utr;Parent=Msa1361840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
