AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0058760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0058760 MtrunA17_Chr1g0146151 94.601 426 19 1 1 426 1 422 0.0 837
Msa0058760 MtrunA17_Chr3g0140071 60.829 434 159 3 1 427 1 430 0.0 524
Msa0058760 MtrunA17_Chr6g0486611 71.914 324 90 1 1 323 1 324 2.21e-178 504
Msa0058760 MtrunA17_Chr8g0390211 59.441 429 167 3 1 427 1 424 9.89e-178 503
Msa0058760 MtrunA17_Chr4g0071031 66.565 329 107 1 1 326 1 329 1.05e-165 473
Msa0058760 MtrunA17_Chr2g0329981 66.770 322 107 0 1 322 1 322 1.93e-164 471
Msa0058760 MtrunA17_Chr2g0299661 65.350 329 111 1 1 326 1 329 2.93e-163 468
Msa0058760 MtrunA17_Chr1g0166821 67.516 314 102 0 1 314 2 315 1.58e-162 465
Msa0058760 MtrunA17_Chr1g0183631 69.492 295 90 0 1 295 1 295 7.05e-161 461
Msa0058760 MtrunA17_Chr1g0187571 66.242 314 106 0 1 314 2 315 5.61e-160 459
Msa0058760 MtrunA17_Chr8g0342821 65.517 319 109 1 1 319 1 318 3.78e-159 457
Msa0058760 MtrunA17_Chr7g0261501 63.190 326 116 1 1 322 1 326 4.99e-157 451
Msa0058760 MtrunA17_Chr1g0167261 59.938 322 120 2 1 320 2 316 6.47e-140 404
Msa0058760 MtrunA17_Chr1g0146301 38.163 283 161 7 2 273 114 393 2.51e-54 191
Msa0058760 MtrunA17_Chr1g0213321 37.857 280 160 6 5 273 113 389 3.62e-54 191
Msa0058760 MtrunA17_Chr7g0214531 35.789 285 164 6 5 273 31 312 4.44e-53 187
Msa0058760 MtrunA17_Chr3g0140431 36.749 283 165 7 2 273 28 307 2.22e-52 185
Msa0058760 MtrunA17_Chr7g0253211 35.231 281 166 5 9 276 324 601 1.06e-48 177
Msa0058760 MtrunA17_Chr8g0340491 34.397 282 163 6 9 273 128 404 3.61e-46 169
Msa0058760 MtrunA17_Chr5g0405421 27.854 219 142 5 2 213 92 301 2.99e-14 74.7
Msa0058760 MtrunA17_Chr5g0432471 27.016 248 146 9 3 236 6 232 1.89e-13 72.0
Msa0058760 MtrunA17_Chr8g0387671 30.144 209 128 7 12 213 69 266 2.00e-13 72.0
Msa0058760 MtrunA17_Chr8g0374701 26.106 226 144 5 1 213 117 332 2.16e-13 72.0
Msa0058760 MtrunA17_Chr4g0075541 27.881 269 164 9 11 269 89 337 2.37e-13 71.2
Msa0058760 MtrunA17_Chr5g0397101 28.182 220 132 6 5 213 63 267 2.48e-13 71.6
Msa0058760 MtrunA17_Chr0c02g0489761 29.545 220 129 8 5 213 74 278 4.40e-13 70.9
Msa0058760 MtrunA17_Chr3g0107011 27.500 240 153 9 4 236 9 234 5.25e-13 70.5
Msa0058760 MtrunA17_Chr7g0274941 25.424 236 157 5 8 237 15 237 2.19e-12 67.4
Msa0058760 MtrunA17_Chr4g0047201 25.118 211 136 7 77 284 276 467 3.07e-12 68.2
Msa0058760 MtrunA17_Chr1g0203881 26.582 237 155 7 8 238 40 263 3.33e-12 68.2
Msa0058760 MtrunA17_Chr5g0428031 26.201 229 148 7 7 227 7 222 3.66e-12 67.8
Msa0058760 MtrunA17_Chr5g0402601 24.252 301 195 10 8 293 371 653 4.56e-12 68.2
Msa0058760 MtrunA17_Chr7g0245031 26.923 234 149 7 9 236 148 365 4.63e-12 67.8
Msa0058760 MtrunA17_Chr7g0276111 25.339 221 145 5 3 213 138 348 7.76e-12 67.4
Msa0058760 MtrunA17_Chr7g0244621 26.552 290 167 14 11 278 47 312 8.00e-12 66.2
Msa0058760 MtrunA17_Chr2g0304111 29.279 222 128 11 6 214 20 225 2.86e-11 65.1
Msa0058760 MtrunA17_Chr4g0045261 26.222 225 142 6 1 213 129 341 2.90e-11 65.5
Msa0058760 MtrunA17_Chr4g0072831 28.319 226 114 8 7 232 8 185 3.11e-11 64.3
Msa0058760 MtrunA17_Chr8g0385341 27.014 211 138 5 9 213 30 230 3.26e-11 65.1
Msa0058760 MtrunA17_Chr4g0033371 29.586 169 109 4 8 167 71 238 3.70e-11 65.1
Msa0058760 MtrunA17_Chr8g0345801 26.877 253 161 9 1 245 8 244 3.96e-11 63.2
Msa0058760 MtrunA17_Chr7g0267771 25.822 213 142 5 9 215 88 290 4.58e-11 64.7
Msa0058760 MtrunA17_Chr1g0201571 25.214 234 150 9 9 231 126 345 8.83e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0058760 AT4G28860.1 59.524 420 146 4 1 412 1 404 0.0 511
Msa0058760 AT4G28880.3 57.554 417 171 2 1 417 1 411 2.06e-178 504
Msa0058760 AT4G28880.2 57.554 417 171 2 1 417 1 411 2.06e-178 504
Msa0058760 AT4G28880.1 57.554 417 171 2 1 417 1 411 2.06e-178 504
Msa0058760 AT4G28880.4 57.554 417 171 2 1 417 1 411 2.06e-178 504
Msa0058760 AT4G28860.2 70.154 325 96 1 1 325 1 324 3.81e-177 499
Msa0058760 AT5G57015.1 67.722 316 102 0 1 316 1 316 1.23e-164 470
Msa0058760 AT4G26100.1 59.615 364 139 2 1 363 1 357 3.68e-163 467
Msa0058760 AT1G72710.1 64.329 328 116 1 1 328 1 327 1.51e-159 458
Msa0058760 AT3G23340.1 66.242 314 106 0 1 314 1 314 8.94e-159 456
Msa0058760 AT5G44100.1 68.121 298 95 0 1 298 1 298 5.44e-158 455
Msa0058760 AT5G44100.2 68.121 298 95 0 1 298 1 298 5.44e-158 455
Msa0058760 AT1G03930.1 66.779 298 99 0 1 298 1 298 5.11e-157 452
Msa0058760 AT2G19470.1 53.269 413 174 3 1 413 1 394 6.19e-156 448
Msa0058760 AT5G43320.1 67.114 298 98 0 1 298 1 298 2.99e-154 445
Msa0058760 AT4G28540.1 66.102 295 100 0 1 295 5 299 3.51e-154 445
Msa0058760 AT4G14340.1 58.924 353 132 1 1 340 7 359 3.18e-153 442
Msa0058760 AT1G04440.1 66.443 298 100 0 1 298 1 298 1.38e-152 441
Msa0058760 AT5G43320.2 67.114 298 98 0 1 298 1 298 2.04e-152 436
Msa0058760 AT5G43320.3 67.114 298 98 0 1 298 1 298 2.04e-152 436
Msa0058760 AT4G14340.2 61.963 326 124 0 1 326 7 332 3.30e-152 436
Msa0058760 AT3G23340.2 62.102 314 105 1 1 314 1 300 1.34e-144 419
Msa0058760 AT4G08800.1 57.047 298 96 2 1 298 1 266 2.04e-122 357
Msa0058760 AT2G25760.2 36.786 280 162 4 9 273 107 386 5.98e-55 193
Msa0058760 AT3G13670.1 35.986 289 166 6 5 277 131 416 1.28e-53 190
Msa0058760 AT2G25760.1 36.786 280 159 5 9 273 107 383 2.75e-53 189
Msa0058760 AT3G03940.1 35.461 282 166 5 9 277 140 418 2.35e-50 181
Msa0058760 AT5G18190.2 35.106 282 167 5 9 277 130 408 3.15e-50 181
Msa0058760 AT5G18190.1 35.106 282 167 5 9 277 130 408 3.15e-50 181
Msa0058760 AT3G06030.1 29.412 221 127 7 8 213 67 273 2.31e-14 75.5
Msa0058760 AT4G36070.2 27.523 218 141 6 8 217 70 278 3.68e-14 74.7
Msa0058760 AT2G17890.1 27.700 213 138 5 8 213 107 310 4.08e-14 74.7
Msa0058760 AT4G36070.1 27.523 218 141 6 8 217 70 278 5.15e-14 74.3
Msa0058760 AT5G66210.3 27.830 212 137 5 9 213 62 264 6.40e-14 73.9
Msa0058760 AT5G66210.5 27.830 212 137 5 9 213 62 264 6.56e-14 73.9
Msa0058760 AT5G66210.6 27.830 212 137 5 9 213 62 264 7.24e-14 73.6
Msa0058760 AT5G66210.4 27.830 212 137 5 9 213 62 264 7.24e-14 73.6
Msa0058760 AT5G66210.1 27.830 212 137 5 9 213 62 264 1.10e-13 73.2
Msa0058760 AT5G66210.2 27.830 212 137 5 9 213 62 264 1.10e-13 73.2
Msa0058760 AT2G46700.1 27.354 223 138 7 3 213 137 347 1.63e-13 72.8
Msa0058760 AT5G66850.1 27.039 233 147 7 5 224 342 564 2.51e-13 72.4
Msa0058760 AT5G66850.2 27.039 233 147 7 5 224 342 564 2.62e-13 72.4
Msa0058760 AT3G49370.1 27.854 219 138 6 7 215 140 348 4.77e-13 71.2
Msa0058760 AT1G62400.1 28.090 267 162 9 11 267 88 334 6.57e-13 70.5
Msa0058760 AT3G53930.2 25.000 268 174 6 5 254 16 274 7.84e-13 70.9
Msa0058760 AT3G53930.1 25.000 268 174 6 5 254 16 274 8.05e-13 70.9
Msa0058760 AT5G25110.1 25.726 241 158 8 3 236 37 263 8.15e-13 70.5
Msa0058760 AT3G50530.1 26.009 223 145 5 1 213 140 352 1.51e-12 69.7
Msa0058760 AT4G14580.1 27.511 229 134 9 2 213 10 223 2.22e-12 68.9
Msa0058760 AT5G10930.1 25.620 242 158 8 3 236 6 233 2.31e-12 68.9
Msa0058760 AT4G23650.1 29.630 216 130 6 9 215 78 280 3.23e-12 68.6
Msa0058760 AT3G23000.1 26.068 234 152 8 3 227 19 240 4.68e-12 67.8
Msa0058760 AT1G51660.1 25.882 255 156 10 12 255 82 314 5.39e-12 67.4
Msa0058760 AT3G08720.1 25.431 232 154 6 9 236 140 356 5.82e-12 67.8
Msa0058760 AT3G08720.3 25.431 232 154 6 9 236 140 356 5.82e-12 67.8
Msa0058760 AT3G08720.4 25.431 232 154 6 9 236 140 356 5.82e-12 67.8
Msa0058760 AT3G08720.2 25.431 232 154 6 9 236 140 356 5.82e-12 67.8
Msa0058760 AT2G31500.1 28.111 217 130 7 8 213 65 266 6.47e-12 67.8
Msa0058760 AT1G01140.3 26.141 241 150 10 7 236 17 240 8.28e-12 67.4
Msa0058760 AT1G01140.1 26.141 241 150 10 7 236 17 240 1.10e-11 67.0
Msa0058760 AT1G08650.2 26.829 246 147 9 8 240 14 239 1.64e-11 65.1
Msa0058760 AT1G08650.1 26.033 242 154 7 8 240 14 239 1.73e-11 65.1
Msa0058760 AT3G08730.1 26.050 238 156 7 4 236 128 350 1.84e-11 66.2
Msa0058760 AT3G08730.2 26.050 238 156 7 4 236 128 350 1.84e-11 66.2
Msa0058760 AT5G24430.1 27.397 219 139 7 7 215 141 349 2.22e-11 66.2
Msa0058760 AT4G24400.1 25.200 250 156 8 7 249 7 232 2.44e-11 65.9
Msa0058760 AT3G01090.3 30.047 213 127 9 9 213 19 217 2.85e-11 65.9
Msa0058760 AT3G01090.1 30.047 213 127 9 9 213 19 217 2.85e-11 65.9
Msa0058760 AT5G21326.1 26.506 249 139 10 7 236 11 234 2.87e-11 65.5
Msa0058760 AT3G01090.2 30.047 213 127 9 9 213 42 240 3.23e-11 65.5
Msa0058760 AT4G24400.2 25.200 250 156 8 7 249 7 232 3.64e-11 65.1
Msa0058760 AT1G67580.1 27.848 237 143 8 14 240 411 629 4.65e-11 65.5
Msa0058760 AT1G67580.2 27.848 237 143 8 14 240 411 629 4.65e-11 65.5
Msa0058760 AT4G32830.1 26.160 237 145 9 9 236 31 246 5.26e-11 63.5
Msa0058760 AT1G35670.1 27.586 232 149 7 9 234 26 244 5.48e-11 64.7
Msa0058760 AT1G01140.2 26.141 241 152 10 7 236 17 242 5.69e-11 64.7

Find 98 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTAGTTCTTGAACTTA+TGG 0.162372 1_2:-15333784 Msa0058760:CDS
GAGGTTTCCACAATCGTTTC+TGG 0.171165 1_2:+15330959 None:intergenic
TCCACAATCGTTTCTGGTTT+TGG 0.174122 1_2:+15330965 None:intergenic
GTACCAAACCATTTCATTCT+TGG 0.227657 1_2:+15333822 None:intergenic
CATTAGACTAACCTTCTTAA+TGG 0.235709 1_2:+15334614 None:intergenic
TATAGAGTTGGTAGGAAAAT+TGG 0.237607 1_2:-15334791 Msa0058760:CDS
CAGGTTTGTATGATTGATTT+TGG 0.247101 1_2:-15333019 Msa0058760:CDS
CAAACCGGATAACTTTCTTA+TGG 0.257400 1_2:-15333157 Msa0058760:CDS
TCATTTGGTGAAATTTATAT+TGG 0.266055 1_2:-15334761 Msa0058760:intron
AAGTTATATAATATTCTTAA+AGG 0.281266 1_2:-15333966 Msa0058760:CDS
GTTCTAGTTCTTGAACTTAT+GGG 0.300809 1_2:-15333783 Msa0058760:CDS
TTCGATCAACGACCAGATTA+TGG 0.303765 1_2:-15331967 Msa0058760:CDS
GCAAAGCCGCAGAGATGATT+TGG 0.307778 1_2:-15332424 Msa0058760:CDS
CAATCATTATATTCTGAAAA+AGG 0.319484 1_2:+15331269 None:intergenic
AAACCGGATAACTTTCTTAT+GGG 0.337171 1_2:-15333156 Msa0058760:CDS
CGTGAATTGTTCACTTCTAA+AGG 0.340115 1_2:-15331925 Msa0058760:intron
GATAACTTTCTTATGGGTCT+TGG 0.366159 1_2:-15333150 Msa0058760:CDS
GTTACAAGCATATCCCTTAC+AGG 0.376749 1_2:-15332967 Msa0058760:intron
TCAGGAGATTCAACAGATAA+AGG 0.377164 1_2:-15331667 Msa0058760:CDS
CGCTTCAAATATCCATAATC+TGG 0.378050 1_2:+15331955 None:intergenic
CACATCCTCTGGTTCAATAC+TGG 0.381850 1_2:+15331408 None:intergenic
TAGAAAATCTTATACCTGTA+AGG 0.385287 1_2:+15332953 None:intergenic
TCAAACCCGGATGGTGTGTT+GGG 0.392811 1_2:-15330938 Msa0058760:CDS
TTGGACTTTCAAAAGGATAC+AGG 0.395538 1_2:-15333000 Msa0058760:CDS
AAAATTGGTAGTGGATCATT+TGG 0.395776 1_2:-15334776 Msa0058760:CDS
GTACCTTACCATCTACTTGA+TGG 0.397382 1_2:+15330862 None:intergenic
ATACTGGTAGGCACGGCAAC+TGG 0.401062 1_2:+15331424 None:intergenic
CACGTGTTTGTATGAAGCTC+AGG 0.404014 1_2:-15331202 Msa0058760:CDS
AGCAATACTCACAAAGGAAT+TGG 0.405316 1_2:-15332546 Msa0058760:intron
ATTCCAAGAATGAAATGGTT+TGG 0.419642 1_2:-15333825 Msa0058760:CDS
ATAACTTTCTTATGGGTCTT+GGG 0.425665 1_2:-15333149 Msa0058760:CDS
CATACAAACACGTGGACGTT+CGG 0.428322 1_2:+15331211 None:intergenic
TTACTCCCCAACACACCATC+CGG 0.429287 1_2:+15330932 None:intergenic
CAACACACCATCCGGGTTTG+AGG 0.433407 1_2:+15330940 None:intergenic
TTTGATGTTGGCCGATCAAA+TGG 0.434639 1_2:-15333703 Msa0058760:intron
CATGATACGCATACCTCAAC+GGG 0.441391 1_2:+15332156 None:intergenic
GTGGTATTCCAAGAATGAAA+TGG 0.445472 1_2:-15333830 Msa0058760:CDS
ATGCTGACTATTTATATGAC+TGG 0.453335 1_2:-15331704 Msa0058760:CDS
AAGTGAACAATTCACGAAAC+AGG 0.453549 1_2:+15331932 None:intergenic
GATAGAGTATTTACATTCCA+AGG 0.456851 1_2:-15333199 Msa0058760:CDS
TCTTGGGAAGAAAGCAAATC+AGG 0.466032 1_2:-15333133 Msa0058760:intron
GTTGGAGGAAAGTATAGAGT+TGG 0.472527 1_2:-15334803 Msa0058760:CDS
ATCTCTGTGTAGTAATCCCT+TGG 0.476514 1_2:+15333182 None:intergenic
TGAGCTTGTGGCCATTAAGA+AGG 0.478601 1_2:-15334625 Msa0058760:intron
GGTGTGTTGGGGAGTAAATG+TGG 0.479979 1_2:-15330926 Msa0058760:CDS
GTAGGCATGACAGTGGAAAC+AGG 0.480866 1_2:+15330998 None:intergenic
AGAGATGATTTGGAGTCTCT+TGG 0.485541 1_2:-15332414 Msa0058760:CDS
GTATGCTCATCCACATCCTC+TGG 0.492959 1_2:+15331397 None:intergenic
CTCAAACCCGGATGGTGTGT+TGG 0.498181 1_2:-15330939 Msa0058760:CDS
CAGTATTGAACCAGAGGATG+TGG 0.498938 1_2:-15331407 Msa0058760:CDS
TTGATGGAAAAGGTTGTTGG+AGG 0.500008 1_2:-15334818 Msa0058760:CDS
ACAACCACAGCTACTATATG+AGG 0.509476 1_2:-15333991 Msa0058760:CDS
ACTTCCCACTACAGTAGTAA+AGG 0.514128 1_2:+15333742 None:intergenic
ATCAATGATTACCATTTGAT+CGG 0.515460 1_2:+15333692 None:intergenic
ATGTGGTGCTTCTGATGACT+TGG 0.519856 1_2:-15330909 Msa0058760:CDS
TGTTGTGACTTCTGAGCTTG+TGG 0.519886 1_2:-15334637 Msa0058760:CDS
AGAAAATCTTATACCTGTAA+GGG 0.525824 1_2:+15332954 None:intergenic
ATGAAATGGTTTGGTACTGA+TGG 0.526555 1_2:-15333816 Msa0058760:CDS
GGGATATGCTTGTAACTGAT+AGG 0.529353 1_2:+15332974 None:intergenic
GAGGATGTGGATGAGCATAC+AGG 0.543688 1_2:-15331394 Msa0058760:intron
TCTACTTGATGGATGAAACT+TGG 0.546328 1_2:+15330873 None:intergenic
AGACCCATAAGAAAGTTATC+CGG 0.547262 1_2:+15333153 None:intergenic
CTTGCAGACCTTGCCAAGGA+AGG 0.550925 1_2:+15332232 None:intergenic
TTCTAGTTCTTGAACTTATG+GGG 0.551546 1_2:-15333782 Msa0058760:CDS
TACTCCCCAACACACCATCC+GGG 0.552601 1_2:+15330933 None:intergenic
GTTGGTAGGAAAATTGGTAG+TGG 0.554470 1_2:-15334785 Msa0058760:CDS
TAAAGGAGGTCGTCGAGACT+CGG 0.558842 1_2:+15333759 None:intergenic
TTATATAATATTCTTAAAGG+AGG 0.558963 1_2:-15333963 Msa0058760:CDS
ATAGAGTATTTACATTCCAA+GGG 0.572950 1_2:-15333198 Msa0058760:CDS
ACCTCCTTTACTACTGTAGT+GGG 0.573795 1_2:-15333746 Msa0058760:CDS
GACCTCCTTTACTACTGTAG+TGG 0.577698 1_2:-15333747 Msa0058760:CDS
GAGGAAAGTATAGAGTTGGT+AGG 0.580361 1_2:-15334799 Msa0058760:CDS
TTTGCCTCATATAGTAGCTG+TGG 0.584195 1_2:+15333987 None:intergenic
TGGACTTTCAAAAGGATACA+GGG 0.587624 1_2:-15332999 Msa0058760:CDS
TCCAAAACCAGAAACGATTG+TGG 0.591590 1_2:-15330966 Msa0058760:CDS
ACTACACAGAGATATCAAAC+CGG 0.594392 1_2:-15333172 Msa0058760:CDS
TGTTTCCACTGTCATGCCTA+CGG 0.604626 1_2:-15330996 Msa0058760:CDS
ACATGATACGCATACCTCAA+CGG 0.612124 1_2:+15332155 None:intergenic
GATGAAACTTGGTCTAGTGA+AGG 0.612154 1_2:+15330884 None:intergenic
GCCTACCAGTATTGAACCAG+AGG 0.614006 1_2:-15331413 Msa0058760:CDS
TGGTTCAATACTGGTAGGCA+CGG 0.622152 1_2:+15331417 None:intergenic
CAAACCCGGATGGTGTGTTG+GGG 0.624054 1_2:-15330937 Msa0058760:CDS
AAGTAAGAAGCAAACTCCAC+GGG 0.633022 1_2:+15332012 None:intergenic
AAAGTAAGAAGCAAACTCCA+CGG 0.637426 1_2:+15332011 None:intergenic
GCAAGTAGCAATACTCACAA+AGG 0.640002 1_2:-15332552 Msa0058760:CDS
GATTGTGGAAACCTCAAACC+CGG 0.641112 1_2:-15330951 Msa0058760:CDS
GCAGCTTGCAGACCTTGCCA+AGG 0.651297 1_2:+15332228 None:intergenic
ACGTGTTTGTATGAAGCTCA+GGG 0.653358 1_2:-15331201 Msa0058760:CDS
TGGTCGTTGATCGAATGTCA+AGG 0.653518 1_2:+15331975 None:intergenic
CTGAGCTTCATACAAACACG+TGG 0.660997 1_2:+15331203 None:intergenic
TCCTCTGGTTCAATACTGGT+AGG 0.662946 1_2:+15331412 None:intergenic
GTTGATCGAATGTCAAGGAG+TGG 0.664837 1_2:+15331980 None:intergenic
ACTTTGCAAGTCATGTCCCG+TGG 0.667670 1_2:-15332028 Msa0058760:CDS
GTGGAAACCTCAAACCCGGA+TGG 0.668268 1_2:-15330947 Msa0058760:CDS
ATCTTCCGTAGGCATGACAG+TGG 0.675961 1_2:+15330991 None:intergenic
TCCCACTACAGTAGTAAAGG+AGG 0.693375 1_2:+15333745 None:intergenic
GAAGTTAAACACTCCCGTTG+AGG 0.700871 1_2:-15332169 Msa0058760:intron
GAGACTCCAAATCATCTCTG+CGG 0.717836 1_2:+15332418 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAATAAAGAAAAAAAAT+AGG + chr1_2:15331143-15331162 None:intergenic 10.0%
!! AAGTTATATAATATTCTTAA+AGG - chr1_2:15331723-15331742 Msa0058760:intron 10.0%
!! TATAATTAGATTTATACATT+TGG - chr1_2:15334612-15334631 Msa0058760:intron 10.0%
!! AAATGATGTAATCAAATTTA+AGG + chr1_2:15331462-15331481 None:intergenic 15.0%
!!! ATTACATCATTTTTATCTTT+TGG - chr1_2:15331470-15331489 Msa0058760:intron 15.0%
!!! TTACATCATTTTTATCTTTT+GGG - chr1_2:15331471-15331490 Msa0058760:intron 15.0%
!! TTATATAATATTCTTAAAGG+AGG - chr1_2:15331726-15331745 Msa0058760:intron 15.0%
!! AGATAAATTTAAAAACAGAA+AGG + chr1_2:15332052-15332071 None:intergenic 15.0%
!! ATATATCATACGTTAAAATT+TGG + chr1_2:15332633-15332652 None:intergenic 15.0%
!!! TTTTTACTTATGTTTAATAC+CGG + chr1_2:15333582-15333601 None:intergenic 15.0%
!! ATATAGTTAAATTCAATCTT+TGG - chr1_2:15334104-15334123 Msa0058760:intron 15.0%
!!! TCATTTGGTGAAATTTATAT+TGG - chr1_2:15330928-15330947 Msa0058760:CDS 20.0%
!!! GTTAATTTATGATCATTTTC+AGG - chr1_2:15331023-15331042 Msa0058760:intron 20.0%
!! TTGTTGTAATAATTGTGATT+AGG - chr1_2:15331158-15331177 Msa0058760:CDS 20.0%
!!! AACGGGAATTTTTTTTTTTT+CGG + chr1_2:15331359-15331378 None:intergenic 20.0%
!!! GATTGTTAATTTACATCTTT+TGG - chr1_2:15331592-15331611 Msa0058760:intron 20.0%
!!! TAGACATATTCTTGTTTTAT+AGG - chr1_2:15331659-15331678 Msa0058760:CDS 20.0%
!! ATCACTATAATGAATTAGAA+AGG + chr1_2:15331829-15331848 None:intergenic 20.0%
!! TTTCTAATTCATTATAGTGA+TGG - chr1_2:15331828-15331847 Msa0058760:intron 20.0%
!! AATAAGCTAAAAACAACTTA+TGG - chr1_2:15332360-15332379 Msa0058760:intron 20.0%
!! TGTTATAAAAGAAATGAAAC+AGG + chr1_2:15332461-15332480 None:intergenic 20.0%
!! AATATAGAGGAATTAAAACA+TGG + chr1_2:15332609-15332628 None:intergenic 20.0%
!! GTTAAAATTTGGAAATATAG+AGG + chr1_2:15332622-15332641 None:intergenic 20.0%
!!! TTTTTCATATTTTTGCATTC+TGG + chr1_2:15333489-15333508 None:intergenic 20.0%
!!! AAAAAGTACATGTACTTATT+TGG - chr1_2:15333597-15333616 Msa0058760:intron 20.0%
!! TGAAAATTGTAAAGTAATTC+CGG + chr1_2:15333872-15333891 None:intergenic 20.0%
!! TAAAAATTGAAGCTTATCAA+AGG + chr1_2:15334075-15334094 None:intergenic 20.0%
!! TGAAAATTTAACCATGAAAA+GGG + chr1_2:15334133-15334152 None:intergenic 20.0%
!! ATGAAAATTTAACCATGAAA+AGG + chr1_2:15334134-15334153 None:intergenic 20.0%
!!! TTTTCATGGTTAAATGTATA+TGG - chr1_2:15334173-15334192 Msa0058760:intron 20.0%
!!! CAATCATTATATTCTGAAAA+AGG + chr1_2:15334423-15334442 None:intergenic 20.0%
!!! GAAATTGTTGCTTTGATTTT+TGG - chr1_2:15331100-15331119 Msa0058760:intron 25.0%
! TATGAATTACAAATACTCCT+AGG - chr1_2:15331245-15331264 Msa0058760:CDS 25.0%
!! TAATTTACATCTTTTGGTCA+CGG - chr1_2:15331598-15331617 Msa0058760:intron 25.0%
! ACAAAGGAAAAATATTGTGA+GGG + chr1_2:15331797-15331816 None:intergenic 25.0%
! AACAAAGGAAAAATATTGTG+AGG + chr1_2:15331798-15331817 None:intergenic 25.0%
!! CATTATAGTGATGGAATTTA+AGG - chr1_2:15331837-15331856 Msa0058760:intron 25.0%
! ATCAATGATTACCATTTGAT+CGG + chr1_2:15332000-15332019 None:intergenic 25.0%
!! AGCACATTAGTTTAAAATGA+AGG - chr1_2:15332164-15332183 Msa0058760:intron 25.0%
!! GCACATTAGTTTAAAATGAA+GGG - chr1_2:15332165-15332184 Msa0058760:intron 25.0%
!!! AGTTGTTTTTATAAGCTATC+TGG - chr1_2:15332324-15332343 Msa0058760:intron 25.0%
!!! GTTGTTTTTATAAGCTATCT+GGG - chr1_2:15332325-15332344 Msa0058760:intron 25.0%
! ATCCAATAAGTAAATCAAAC+AGG - chr1_2:15332428-15332447 Msa0058760:CDS 25.0%
!! ATAGAGTATTTACATTCCAA+GGG - chr1_2:15332491-15332510 Msa0058760:intron 25.0%
! ATGAAATATGTTACATTCAC+AGG - chr1_2:15332651-15332670 Msa0058760:intron 25.0%
!!! ATTGATTTTGGACTTTCAAA+AGG - chr1_2:15332682-15332701 Msa0058760:intron 25.0%
! AGAAAATCTTATACCTGTAA+GGG + chr1_2:15332738-15332757 None:intergenic 25.0%
! TAGAAAATCTTATACCTGTA+AGG + chr1_2:15332739-15332758 None:intergenic 25.0%
! ATAGATAGCTTAATTCAAAG+TGG + chr1_2:15333037-15333056 None:intergenic 25.0%
! TTTCCTTCTTTATTGTCTTT+AGG - chr1_2:15333184-15333203 Msa0058760:CDS 25.0%
! ATACCTAAAGACAATAAAGA+AGG + chr1_2:15333190-15333209 None:intergenic 25.0%
!! ACTATTTTCACTCACAATTT+TGG - chr1_2:15333227-15333246 Msa0058760:intron 25.0%
!!! GTTCTTTTGTACTTTTTAAG+AGG - chr1_2:15333302-15333321 Msa0058760:intron 25.0%
!!! TTTTGTACTTTTTAAGAGGA+AGG - chr1_2:15333306-15333325 Msa0058760:intron 25.0%
! ATGGTAAAAGTAGAATCAAT+AGG + chr1_2:15333342-15333361 None:intergenic 25.0%
! ATTGTGAGTATCAAACAATT+TGG + chr1_2:15333908-15333927 None:intergenic 25.0%
! TCACTTCCTAAATTTATGTT+TGG - chr1_2:15333953-15333972 Msa0058760:intron 25.0%
!!! ATGCTCAAACATTTTTTTCA+TGG - chr1_2:15334159-15334178 Msa0058760:intron 25.0%
!! CAATATTTTCTGTATTGTGA+AGG - chr1_2:15334362-15334381 Msa0058760:intron 25.0%
! ATAAAGTAACTCACTTGAAT+TGG - chr1_2:15334635-15334654 Msa0058760:CDS 25.0%
!! TATAGAGTTGGTAGGAAAAT+TGG - chr1_2:15330898-15330917 Msa0058760:CDS 30.0%
!! AAAATTGGTAGTGGATCATT+TGG - chr1_2:15330913-15330932 Msa0058760:CDS 30.0%
CATTAGACTAACCTTCTTAA+TGG + chr1_2:15331078-15331097 None:intergenic 30.0%
!! CATTAAGAAGGTTAGTCTAA+TGG - chr1_2:15331076-15331095 Msa0058760:intron 30.0%
TTACAAATACTCCTAGGATT+AGG - chr1_2:15331251-15331270 Msa0058760:CDS 30.0%
TCCAAGGTATATAAAAGCAA+CGG + chr1_2:15331377-15331396 None:intergenic 30.0%
!! TTTATCTTTTGGGTAGTACA+TGG - chr1_2:15331481-15331500 Msa0058760:intron 30.0%
TATAAACCATCACATAGTTG+AGG + chr1_2:15331638-15331657 None:intergenic 30.0%
AGAAAGGACTAAGAAAACAA+AGG + chr1_2:15331813-15331832 None:intergenic 30.0%
! TATAGTGATGGAATTTAAGG+TGG - chr1_2:15331840-15331859 Msa0058760:intron 30.0%
ATTCCAAGAATGAAATGGTT+TGG - chr1_2:15331864-15331883 Msa0058760:intron 30.0%
!! TGTTCTAGTTCTTGAACTTA+TGG - chr1_2:15331905-15331924 Msa0058760:intron 30.0%
!! GTTCTAGTTCTTGAACTTAT+GGG - chr1_2:15331906-15331925 Msa0058760:intron 30.0%
!! TTCTAGTTCTTGAACTTATG+GGG - chr1_2:15331907-15331926 Msa0058760:intron 30.0%
!! GGTAATCATTGATTCATCTA+TGG - chr1_2:15332007-15332026 Msa0058760:CDS 30.0%
AAAGGAAAAGATGCATTCAA+CGG + chr1_2:15332034-15332053 None:intergenic 30.0%
GCAAGTTTGATGTAAAAAGA+GGG + chr1_2:15332131-15332150 None:intergenic 30.0%
TGCAAGTTTGATGTAAAAAG+AGG + chr1_2:15332132-15332151 None:intergenic 30.0%
TTACATCAAACTTGCATCAA+CGG - chr1_2:15332136-15332155 Msa0058760:intron 30.0%
! AGCCTGTTTGATTTACTTAT+TGG + chr1_2:15332433-15332452 None:intergenic 30.0%
! TTCTTTTATAACAGCTTACG+AGG - chr1_2:15332468-15332487 Msa0058760:intron 30.0%
! GATAGAGTATTTACATTCCA+AGG - chr1_2:15332490-15332509 Msa0058760:intron 30.0%
AAACCGGATAACTTTCTTAT+GGG - chr1_2:15332533-15332552 Msa0058760:intron 30.0%
ATAACTTTCTTATGGGTCTT+GGG - chr1_2:15332540-15332559 Msa0058760:intron 30.0%
!! CAGGTTTGTATGATTGATTT+TGG - chr1_2:15332670-15332689 Msa0058760:intron 30.0%
TGTTTGATCTCTTCTTGATA+TGG - chr1_2:15332776-15332795 Msa0058760:intron 30.0%
! TGACAGAAAAGCTGTTATTT+AGG + chr1_2:15332849-15332868 None:intergenic 30.0%
TTTGCTTGATTCATTCTTAG+TGG - chr1_2:15333000-15333019 Msa0058760:CDS 30.0%
AGCTTAATTCAAAGTGGTAA+GGG + chr1_2:15333031-15333050 None:intergenic 30.0%
TAGCTTAATTCAAAGTGGTA+AGG + chr1_2:15333032-15333051 None:intergenic 30.0%
! TGTTAAGTTTTTGTTCTCTC+TGG + chr1_2:15333102-15333121 None:intergenic 30.0%
AGAGAGAACAAAAACTTAAC+AGG - chr1_2:15333101-15333120 Msa0058760:intron 30.0%
AAACGTAAGACTTGACTATT+TGG - chr1_2:15333412-15333431 Msa0058760:intron 30.0%
!! TTCATATTTTTGCATTCTGG+TGG + chr1_2:15333486-15333505 None:intergenic 30.0%
TACTTATGTTTAATACCGGA+GGG + chr1_2:15333578-15333597 None:intergenic 30.0%
TTACTTATGTTTAATACCGG+AGG + chr1_2:15333579-15333598 None:intergenic 30.0%
ACAACGAATTTCTTGTTCTT+AGG - chr1_2:15333637-15333656 Msa0058760:intron 30.0%
! TTTCGAGGATTTTCAATTTC+CGG - chr1_2:15333850-15333869 Msa0058760:intron 30.0%
TTCCTAAATTTATGTTTGGC+AGG - chr1_2:15333957-15333976 Msa0058760:intron 30.0%
ATCCTGCCAAACATAAATTT+AGG + chr1_2:15333962-15333981 None:intergenic 30.0%
! ATGCTGACTATTTATATGAC+TGG - chr1_2:15333985-15334004 Msa0058760:CDS 30.0%
!!! CTGGACGATTTTAAAATATC+AGG - chr1_2:15334004-15334023 Msa0058760:CDS 30.0%
ATTTCCCGTTTACAATTTGT+AGG - chr1_2:15334240-15334259 Msa0058760:intron 30.0%
!!! TCGGTATAGATTTTTGGTTT+TGG + chr1_2:15334462-15334481 None:intergenic 30.0%
ATTCTTAGATGCCTAATCCT+AGG + chr1_2:15331265-15331284 None:intergenic 35.0%
AGGATTAGGCATCTAAGAAT+AGG - chr1_2:15331265-15331284 Msa0058760:CDS 35.0%
CCAAGGTATATAAAAGCAAC+GGG + chr1_2:15331376-15331395 None:intergenic 35.0%
ACACATTCTAGTCACAGTTA+CGG - chr1_2:15331406-15331425 Msa0058760:CDS 35.0%
AGTCACAGTTACGGTAATAA+TGG - chr1_2:15331415-15331434 Msa0058760:CDS 35.0%
ATGGATGAAGCTTAAAGACT+AGG - chr1_2:15331504-15331523 Msa0058760:intron 35.0%
AAAAGTCCTCAACTATGTGA+TGG - chr1_2:15331629-15331648 Msa0058760:intron 35.0%
GTGGTATTCCAAGAATGAAA+TGG - chr1_2:15331859-15331878 Msa0058760:intron 35.0%
GTACCAAACCATTTCATTCT+TGG + chr1_2:15331870-15331889 None:intergenic 35.0%
!! ATGAAATGGTTTGGTACTGA+TGG - chr1_2:15331873-15331892 Msa0058760:intron 35.0%
! TGGGAAGTTTTCGCTAAAAT+CGG - chr1_2:15331962-15331981 Msa0058760:CDS 35.0%
!! GCTAAAATCGGTTTTGATGT+TGG - chr1_2:15331974-15331993 Msa0058760:CDS 35.0%
ACTACACAGAGATATCAAAC+CGG - chr1_2:15332517-15332536 Msa0058760:intron 35.0%
CAAACCGGATAACTTTCTTA+TGG - chr1_2:15332532-15332551 Msa0058760:intron 35.0%
AGACCCATAAGAAAGTTATC+CGG + chr1_2:15332539-15332558 None:intergenic 35.0%
GATAACTTTCTTATGGGTCT+TGG - chr1_2:15332539-15332558 Msa0058760:intron 35.0%
TTGGACTTTCAAAAGGATAC+AGG - chr1_2:15332689-15332708 Msa0058760:intron 35.0%
TGGACTTTCAAAAGGATACA+GGG - chr1_2:15332690-15332709 Msa0058760:intron 35.0%
AGCAATACTCACAAAGGAAT+TGG - chr1_2:15333143-15333162 Msa0058760:CDS 35.0%
GAGTGAAAATAGTTACTCAG+TGG + chr1_2:15333220-15333239 None:intergenic 35.0%
AAGCAACATCTTATGATGCA+TGG + chr1_2:15333361-15333380 None:intergenic 35.0%
!! TTTTGCATTTTAGCCTTCCT+TGG - chr1_2:15333444-15333463 Msa0058760:intron 35.0%
AAAGTAAGAAGCAAACTCCA+CGG + chr1_2:15333681-15333700 None:intergenic 35.0%
CGCTTCAAATATCCATAATC+TGG + chr1_2:15333737-15333756 None:intergenic 35.0%
AAGTGAACAATTCACGAAAC+AGG + chr1_2:15333760-15333779 None:intergenic 35.0%
CGTGAATTGTTCACTTCTAA+AGG - chr1_2:15333764-15333783 Msa0058760:CDS 35.0%
! TAGCAACAGCTTGTTTAAGA+TGG - chr1_2:15333813-15333832 Msa0058760:CDS 35.0%
!! GCAATTTACATGTTGTTTCG+AGG - chr1_2:15333835-15333854 Msa0058760:intron 35.0%
TCAGGAGATTCAACAGATAA+AGG - chr1_2:15334022-15334041 Msa0058760:intron 35.0%
TGGAGCCTACAAATTGTAAA+CGG + chr1_2:15334248-15334267 None:intergenic 35.0%
ACAGTCATTAGAATATGCTC+TGG + chr1_2:15334396-15334415 None:intergenic 35.0%
AATAACTTTAGCATGCAGAG+AGG + chr1_2:15334566-15334585 None:intergenic 35.0%
! GTTGGAGGAAAGTATAGAGT+TGG - chr1_2:15330886-15330905 Msa0058760:CDS 40.0%
! GAGGAAAGTATAGAGTTGGT+AGG - chr1_2:15330890-15330909 Msa0058760:CDS 40.0%
! GTTGGTAGGAAAATTGGTAG+TGG - chr1_2:15330904-15330923 Msa0058760:CDS 40.0%
!!! CCCGTTGCTTTTATATACCT+TGG - chr1_2:15331373-15331392 Msa0058760:intron 40.0%
!! AATGTGTTCGAGAGTATCCA+AGG + chr1_2:15331393-15331412 None:intergenic 40.0%
!! TCTTTTGGGTAGTACATGGA+TGG - chr1_2:15331485-15331504 Msa0058760:intron 40.0%
ACAACCACAGCTACTATATG+AGG - chr1_2:15331698-15331717 Msa0058760:CDS 40.0%
TTTGCCTCATATAGTAGCTG+TGG + chr1_2:15331705-15331724 None:intergenic 40.0%
ACCTCCTTTACTACTGTAGT+GGG - chr1_2:15331943-15331962 Msa0058760:CDS 40.0%
ACTTCCCACTACAGTAGTAA+AGG + chr1_2:15331950-15331969 None:intergenic 40.0%
TTTGATGTTGGCCGATCAAA+TGG - chr1_2:15331986-15332005 Msa0058760:CDS 40.0%
ATCTCTGTGTAGTAATCCCT+TGG + chr1_2:15332510-15332529 None:intergenic 40.0%
TCTTGGGAAGAAAGCAAATC+AGG - chr1_2:15332556-15332575 Msa0058760:CDS 40.0%
GGGATATGCTTGTAACTGAT+AGG + chr1_2:15332718-15332737 None:intergenic 40.0%
GTTACAAGCATATCCCTTAC+AGG - chr1_2:15332722-15332741 Msa0058760:intron 40.0%
CTCTCTGGATGAGTTTATCA+AGG + chr1_2:15333087-15333106 None:intergenic 40.0%
GCAAGTAGCAATACTCACAA+AGG - chr1_2:15333137-15333156 Msa0058760:CDS 40.0%
! AGAGATGATTTGGAGTCTCT+TGG - chr1_2:15333275-15333294 Msa0058760:intron 40.0%
ACATGATACGCATACCTCAA+CGG + chr1_2:15333537-15333556 None:intergenic 40.0%
AAGTAAGAAGCAAACTCCAC+GGG + chr1_2:15333680-15333699 None:intergenic 40.0%
TTCGATCAACGACCAGATTA+TGG - chr1_2:15333722-15333741 Msa0058760:CDS 40.0%
! ATCTTTGGTCACCCTTTTCA+TGG - chr1_2:15334119-15334138 Msa0058760:intron 40.0%
GGAGCCTACAAATTGTAAAC+GGG + chr1_2:15334247-15334266 None:intergenic 40.0%
! GGACGTTCGGTATAGATTTT+TGG + chr1_2:15334468-15334487 None:intergenic 40.0%
ACGTGTTTGTATGAAGCTCA+GGG - chr1_2:15334488-15334507 Msa0058760:intron 40.0%
TCCAAAACCAGAAACGATTG+TGG - chr1_2:15334723-15334742 Msa0058760:intron 40.0%
!!! TCCACAATCGTTTCTGGTTT+TGG + chr1_2:15334727-15334746 None:intergenic 40.0%
GATGAAACTTGGTCTAGTGA+AGG + chr1_2:15334808-15334827 None:intergenic 40.0%
TGTTGTGACTTCTGAGCTTG+TGG - chr1_2:15331052-15331071 Msa0058760:intron 45.0%
TGAGCTTGTGGCCATTAAGA+AGG - chr1_2:15331064-15331083 Msa0058760:intron 45.0%
GTTGTCAGACATGTGTTGCA+CGG + chr1_2:15331323-15331342 None:intergenic 45.0%
GACCTCCTTTACTACTGTAG+TGG - chr1_2:15331942-15331961 Msa0058760:CDS 45.0%
TCCCACTACAGTAGTAAAGG+AGG + chr1_2:15331947-15331966 None:intergenic 45.0%
AAGCTATCTGGGAGAGCTTA+TGG - chr1_2:15332336-15332355 Msa0058760:intron 45.0%
GAGACTCCAAATCATCTCTG+CGG + chr1_2:15333274-15333293 None:intergenic 45.0%
!! CATTTTAGCCTTCCTTGGCA+AGG - chr1_2:15333449-15333468 Msa0058760:intron 45.0%
GAAGTTAAACACTCCCGTTG+AGG - chr1_2:15333520-15333539 Msa0058760:intron 45.0%
CATGATACGCATACCTCAAC+GGG + chr1_2:15333536-15333555 None:intergenic 45.0%
GTTGATCGAATGTCAAGGAG+TGG + chr1_2:15333712-15333731 None:intergenic 45.0%
TGGTCGTTGATCGAATGTCA+AGG + chr1_2:15333717-15333736 None:intergenic 45.0%
TGGTTCAATACTGGTAGGCA+CGG + chr1_2:15334275-15334294 None:intergenic 45.0%
! TCCTCTGGTTCAATACTGGT+AGG + chr1_2:15334280-15334299 None:intergenic 45.0%
! CACATCCTCTGGTTCAATAC+TGG + chr1_2:15334284-15334303 None:intergenic 45.0%
! CAGTATTGAACCAGAGGATG+TGG - chr1_2:15334282-15334301 Msa0058760:intron 45.0%
CATACAAACACGTGGACGTT+CGG + chr1_2:15334481-15334500 None:intergenic 45.0%
CTGAGCTTCATACAAACACG+TGG + chr1_2:15334489-15334508 None:intergenic 45.0%
CACGTGTTTGTATGAAGCTC+AGG - chr1_2:15334487-15334506 Msa0058760:intron 45.0%
TGTTTCCACTGTCATGCCTA+CGG - chr1_2:15334693-15334712 Msa0058760:intron 45.0%
!!! GGTTTTGGAACATCTTCCGT+AGG + chr1_2:15334712-15334731 None:intergenic 45.0%
GAGGTTTCCACAATCGTTTC+TGG + chr1_2:15334733-15334752 None:intergenic 45.0%
GATTGTGGAAACCTCAAACC+CGG - chr1_2:15334738-15334757 Msa0058760:intron 45.0%
ATGTGGTGCTTCTGATGACT+TGG - chr1_2:15334780-15334799 Msa0058760:CDS 45.0%
!! TATAAATCTAATTATAATAT+CGG + chr1_2:15334608-15334627 None:intergenic 5.0%
TAAAGGAGGTCGTCGAGACT+CGG + chr1_2:15331933-15331952 None:intergenic 50.0%
GCAAAGCCGCAGAGATGATT+TGG - chr1_2:15333265-15333284 Msa0058760:intron 50.0%
TTGCGACTCTCAACAGTGCA+GGG - chr1_2:15333379-15333398 Msa0058760:intron 50.0%
ACTTTGCAAGTCATGTCCCG+TGG - chr1_2:15333661-15333680 Msa0058760:intron 50.0%
! GCCTACCAGTATTGAACCAG+AGG - chr1_2:15334276-15334295 Msa0058760:intron 50.0%
GTATGCTCATCCACATCCTC+TGG + chr1_2:15334295-15334314 None:intergenic 50.0%
GAGGATGTGGATGAGCATAC+AGG - chr1_2:15334295-15334314 Msa0058760:intron 50.0%
GTAGGCATGACAGTGGAAAC+AGG + chr1_2:15334694-15334713 None:intergenic 50.0%
ATCTTCCGTAGGCATGACAG+TGG + chr1_2:15334701-15334720 None:intergenic 50.0%
TCAAACCCGGATGGTGTGTT+GGG - chr1_2:15334751-15334770 Msa0058760:intron 50.0%
TTACTCCCCAACACACCATC+CGG + chr1_2:15334760-15334779 None:intergenic 50.0%
GGTGTGTTGGGGAGTAAATG+TGG - chr1_2:15334763-15334782 Msa0058760:CDS 50.0%
CTTGCGACTCTCAACAGTGC+AGG - chr1_2:15333378-15333397 Msa0058760:intron 55.0%
CTTGCAGACCTTGCCAAGGA+AGG + chr1_2:15333460-15333479 None:intergenic 55.0%
ATACTGGTAGGCACGGCAAC+TGG + chr1_2:15334268-15334287 None:intergenic 55.0%
GTGGAAACCTCAAACCCGGA+TGG - chr1_2:15334742-15334761 Msa0058760:intron 55.0%
CAACACACCATCCGGGTTTG+AGG + chr1_2:15334752-15334771 None:intergenic 55.0%
CTCAAACCCGGATGGTGTGT+TGG - chr1_2:15334750-15334769 Msa0058760:intron 55.0%
CAAACCCGGATGGTGTGTTG+GGG - chr1_2:15334752-15334771 Msa0058760:intron 55.0%
TACTCCCCAACACACCATCC+GGG + chr1_2:15334759-15334778 None:intergenic 55.0%
GCAGCTTGCAGACCTTGCCA+AGG + chr1_2:15333464-15333483 None:intergenic 60.0%
! CGGAGGGAGTACGTAGCAAG+GGG + chr1_2:15333562-15333581 None:intergenic 60.0%
! CCGGAGGGAGTACGTAGCAA+GGG + chr1_2:15333563-15333582 None:intergenic 60.0%
CCCTTGCTACGTACTCCCTC+CGG - chr1_2:15333560-15333579 Msa0058760:intron 60.0%
! ACCGGAGGGAGTACGTAGCA+AGG + chr1_2:15333564-15333583 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 15330874 15334837 15330874 ID=Msa0058760;Name=Msa0058760
chr1_2 mRNA 15330874 15334837 15330874 ID=Msa0058760-mRNA-1;Parent=Msa0058760;Name=Msa0058760-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.46|0.35|1|1|1|14|0|427
chr1_2 exon 15334762 15334837 15334762 ID=Msa0058760-mRNA-1:exon:6215;Parent=Msa0058760-mRNA-1
chr1_2 exon 15334626 15334666 15334626 ID=Msa0058760-mRNA-1:exon:6214;Parent=Msa0058760-mRNA-1
chr1_2 exon 15333961 15334030 15333961 ID=Msa0058760-mRNA-1:exon:6213;Parent=Msa0058760-mRNA-1
chr1_2 exon 15333704 15333852 15333704 ID=Msa0058760-mRNA-1:exon:6212;Parent=Msa0058760-mRNA-1
chr1_2 exon 15333134 15333229 15333134 ID=Msa0058760-mRNA-1:exon:6211;Parent=Msa0058760-mRNA-1
chr1_2 exon 15332968 15333038 15332968 ID=Msa0058760-mRNA-1:exon:6210;Parent=Msa0058760-mRNA-1
chr1_2 exon 15332547 15332608 15332547 ID=Msa0058760-mRNA-1:exon:6209;Parent=Msa0058760-mRNA-1
chr1_2 exon 15332384 15332447 15332384 ID=Msa0058760-mRNA-1:exon:6208;Parent=Msa0058760-mRNA-1
chr1_2 exon 15332170 15332254 15332170 ID=Msa0058760-mRNA-1:exon:6207;Parent=Msa0058760-mRNA-1
chr1_2 exon 15331926 15332052 15331926 ID=Msa0058760-mRNA-1:exon:6206;Parent=Msa0058760-mRNA-1
chr1_2 exon 15331650 15331732 15331650 ID=Msa0058760-mRNA-1:exon:6205;Parent=Msa0058760-mRNA-1
chr1_2 exon 15331395 15331449 15331395 ID=Msa0058760-mRNA-1:exon:6204;Parent=Msa0058760-mRNA-1
chr1_2 exon 15331154 15331293 15331154 ID=Msa0058760-mRNA-1:exon:6203;Parent=Msa0058760-mRNA-1
chr1_2 exon 15330874 15331038 15330874 ID=Msa0058760-mRNA-1:exon:6202;Parent=Msa0058760-mRNA-1
chr1_2 CDS 15334762 15334837 15334762 ID=Msa0058760-mRNA-1:cds;Parent=Msa0058760-mRNA-1
chr1_2 CDS 15334626 15334666 15334626 ID=Msa0058760-mRNA-1:cds;Parent=Msa0058760-mRNA-1
chr1_2 CDS 15333961 15334030 15333961 ID=Msa0058760-mRNA-1:cds;Parent=Msa0058760-mRNA-1
chr1_2 CDS 15333704 15333852 15333704 ID=Msa0058760-mRNA-1:cds;Parent=Msa0058760-mRNA-1
chr1_2 CDS 15333134 15333229 15333134 ID=Msa0058760-mRNA-1:cds;Parent=Msa0058760-mRNA-1
chr1_2 CDS 15332968 15333038 15332968 ID=Msa0058760-mRNA-1:cds;Parent=Msa0058760-mRNA-1
chr1_2 CDS 15332547 15332608 15332547 ID=Msa0058760-mRNA-1:cds;Parent=Msa0058760-mRNA-1
chr1_2 CDS 15332384 15332447 15332384 ID=Msa0058760-mRNA-1:cds;Parent=Msa0058760-mRNA-1
chr1_2 CDS 15332170 15332254 15332170 ID=Msa0058760-mRNA-1:cds;Parent=Msa0058760-mRNA-1
chr1_2 CDS 15331926 15332052 15331926 ID=Msa0058760-mRNA-1:cds;Parent=Msa0058760-mRNA-1
chr1_2 CDS 15331650 15331732 15331650 ID=Msa0058760-mRNA-1:cds;Parent=Msa0058760-mRNA-1
chr1_2 CDS 15331395 15331449 15331395 ID=Msa0058760-mRNA-1:cds;Parent=Msa0058760-mRNA-1
chr1_2 CDS 15331154 15331293 15331154 ID=Msa0058760-mRNA-1:cds;Parent=Msa0058760-mRNA-1
chr1_2 CDS 15330874 15331038 15330874 ID=Msa0058760-mRNA-1:cds;Parent=Msa0058760-mRNA-1
Gene Sequence

>Msa0058760

ATGGAAAAGGTTGTTGGAGGAAAGTATAGAGTTGGTAGGAAAATTGGTAGTGGATCATTTGGTGAAATTTATATTGGTGCACATGTTGTGACTTCTGAGCTTGTGGCCATTAAGAAGGAGAAGAAGAAAACTCAACAACCACAGCTACTATATGAGGCAAAGTTATATAATATTCTTAAAGGAGGAAGTGGTATTCCAAGAATGAAATGGTTTGGTACTGATGGAGACTATAATGTTCTAGTTCTTGAACTTATGGGGCCGAGTCTCGACGACCTCCTTTACTACTGTAGTGGGAAGTTTTCGCTAAAATCGGTTTTGATGTTGGCCGATCAAATGCTTACGAGGATAGAGTATTTACATTCCAAGGGATTACTACACAGAGATATCAAACCGGATAACTTTCTTATGGGTCTTGGGAAGAAAGCAAATCAGGTTTGTATGATTGATTTTGGACTTTCAAAAGGATACAGGGATCCTATCAGTTACAAGCATATCCCTTACAGAGAGAACAAAAACTTAACAGGAACTGCACGTTATGCAAGTAGCAATACTCACAAAGGAATTGAGCAAAGCCGCAGAGATGATTTGGAGTCTCTTGGCTATGTTCTTTTGTACTTTTTAAGAGGAAGCCTTCCTTGGCAAGGTCTGCAAGCTGCCACCAGAATGCAAAAATATGAAAAAATATGCGAAACGAAGTTAAACACTCCCGTTGAGGTACTTTGCAAGTCATGTCCCGTGGAGTTTGCTTCTTACTTTCATTATTGCCACTCCTTGACATTCGATCAACGACCAGATTATGGATATTTGAAGCGCCTGTTTCGTGAATTGTTCACTTCTAAAGGATATGATGCTGACTATTTATATGACTGGACGATTTTAAAATATCAGGAGATTCAACAGATAAAGGCACAAAATCAATCAATAGCTCCAGTTGCCGTGCCTACCAGTATTGAACCAGAGGATGTGGATGAGCATACAGTTCCTTTTTCAGAATATAATGATTGTACTCAAAATGCATTGCCAAAACCAAAAATCTATACCGAACGTCCACGTGTTTGTATGAAGCTCAGGGTAGCTAACGTCGATAATCTTGATGATGAGATTCAAACAGATAAACAAAATGTGAATACTGATTTACCTGTTTCCACTGTCATGCCTACGGAAGATGTTCCAAAACCAGAAACGATTGTGGAAACCTCAAACCCGGATGGTGTGTTGGGGAGTAAATGTGGTGCTTCTGATGACTTGGTTCCTTCACTAGACCAAGTTTCATCCATCAAGTAG

Protein sequence

>Msa0058760

MEKVVGGKYRVGRKIGSGSFGEIYIGAHVVTSELVAIKKEKKKTQQPQLLYEAKLYNILKGGSGIPRMKWFGTDGDYNVLVLELMGPSLDDLLYYCSGKFSLKSVLMLADQMLTRIEYLHSKGLLHRDIKPDNFLMGLGKKANQVCMIDFGLSKGYRDPISYKHIPYRENKNLTGTARYASSNTHKGIEQSRRDDLESLGYVLLYFLRGSLPWQGLQAATRMQKYEKICETKLNTPVEVLCKSCPVEFASYFHYCHSLTFDQRPDYGYLKRLFRELFTSKGYDADYLYDWTILKYQEIQQIKAQNQSIAPVAVPTSIEPEDVDEHTVPFSEYNDCTQNALPKPKIYTERPRVCMKLRVANVDNLDDEIQTDKQNVNTDLPVSTVMPTEDVPKPETIVETSNPDGVLGSKCGASDDLVPSLDQVSSIK*