AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0417790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417790 MtrunA17_Chr3g0115281 92.459 305 17 2 1 300 1 304 0.0 539
Msa0417790 MtrunA17_Chr7g0254481 45.249 221 117 2 63 279 84 304 3.80e-59 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417790 AT1G36390.1 47.656 256 122 3 31 286 31 274 3.65e-70 219
Msa0417790 AT1G36390.2 47.656 256 122 3 31 286 31 274 3.65e-70 219
Msa0417790 AT5G17710.3 47.895 190 99 0 90 279 113 302 3.98e-55 182
Msa0417790 AT5G17710.1 47.895 190 99 0 90 279 113 302 3.98e-55 182
Msa0417790 AT5G17710.2 47.895 190 99 0 90 279 115 304 5.26e-55 181

Find 91 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGATTCATCATTGAAAA+AGG 0.177252 3_2:+65113899 Msa0417790:three_prime_UTR
TTTCAAGAAAGAACAATTTC+TGG 0.178679 3_2:-65113979 None:intergenic
TGAACGAAATTGGGTGGTTT+TGG 0.202923 3_2:-65111641 None:intergenic
GATAGTGTTGGAGGCGTAAA+AGG 0.207213 3_2:-65111678 None:intergenic
TACGCCTCCAACACTATCTT+AGG 0.217564 3_2:+65111683 Msa0417790:CDS
ACAAGATTTACCAAGCTTAT+TGG 0.223350 3_2:+65111985 Msa0417790:CDS
TAACTTACCAAAGGATTAAA+AGG 0.227686 3_2:-65112421 None:intergenic
AGATGGAAAATGAACGAAAT+TGG 0.241708 3_2:-65111651 None:intergenic
CTTTCTTGTATGCTTTAATA+AGG 0.254294 3_2:-65112009 None:intergenic
TGAGGAGTCCGAAGTGTTTA+AGG 0.256357 3_2:+65113551 Msa0417790:CDS
TACACTTGAAAAGGAATCTT+TGG 0.266699 3_2:-65111744 None:intergenic
GTTTGTTGGTTGGTAATTAC+AGG 0.296173 3_2:-65111490 None:intergenic
GAAATGCTTCTGTTGTTCTA+TGG 0.299320 3_2:+65113817 Msa0417790:three_prime_UTR
TTGATGGCTGCTCCAAGGAC+TGG 0.358588 3_2:-65113692 None:intergenic
TACAAGAAAGCCTTTCTTAA+CGG 0.370413 3_2:+65112022 Msa0417790:CDS
TCAGAAAGTATCTAGTTTAT+CGG 0.373978 3_2:+65112114 Msa0417790:CDS
TCAATTCTAGCAGCTGTTGA+TGG 0.374139 3_2:-65113708 None:intergenic
CTTTCTATCGCCGTTAAGAA+AGG 0.383363 3_2:-65112032 None:intergenic
TCTCTCGAATCAATCTCTAT+TGG 0.404166 3_2:+65111574 Msa0417790:CDS
GGATTTATGCAAGGTGCATA+AGG 0.409734 3_2:+65111457 Msa0417790:five_prime_UTR
GAGTGCCTGACAAAATATTA+AGG 0.411237 3_2:-65114090 None:intergenic
GCACTTGTGAAGGTTTCCTT+AGG 0.414176 3_2:+65113636 Msa0417790:CDS
AGCAATTTGTAGAGACTTTG+AGG 0.424003 3_2:+65112362 Msa0417790:CDS
CCTAGTTCCACCTGCTTACC+TGG 0.428365 3_2:+65113773 Msa0417790:three_prime_UTR
GAAGCGAAGAGGGAGGAGGT+TGG 0.430365 3_2:-65111722 None:intergenic
AGTGGCATCTACCCAGTCCT+TGG 0.435806 3_2:+65113680 Msa0417790:CDS
GAGGAGGTTGGATTGAGAGT+TGG 0.441456 3_2:-65111710 None:intergenic
TCTGTTGTTCTATGGTATGT+TGG 0.451289 3_2:+65113825 Msa0417790:three_prime_UTR
AGGTTTCTTGCTCAAAGATA+AGG 0.453331 3_2:+65113602 Msa0417790:CDS
GATGGAAAATGAACGAAATT+GGG 0.454309 3_2:-65111650 None:intergenic
GTGAAGGTTTCCTTAGGTCC+CGG 0.454329 3_2:+65113642 Msa0417790:CDS
TGCTCAAAGATAAGGTTGTA+AGG 0.460819 3_2:+65113610 Msa0417790:CDS
ATGTTGTGGAAGTTGTTTGT+TGG 0.467990 3_2:-65111504 None:intergenic
CCAGGTAAGCAGGTGGAACT+AGG 0.468157 3_2:-65113773 None:intergenic
AACTCTACGCATCAAAATCA+TGG 0.470462 3_2:-65114019 None:intergenic
GAGAGAGCGTACACTTGAAA+AGG 0.470698 3_2:-65111753 None:intergenic
ATAGTGTTGGAGGCGTAAAA+GGG 0.478533 3_2:-65111677 None:intergenic
GGAAAGAATTAGCATTCAAT+CGG 0.485047 3_2:+65112213 Msa0417790:CDS
TGATGGCTGCTCCAAGGACT+GGG 0.486960 3_2:-65113691 None:intergenic
GTGTAGGAAGCAATTATGTT+GGG 0.499354 3_2:+65111436 None:intergenic
ATCATAGACTATACTCACTT+GGG 0.505532 3_2:-65113849 None:intergenic
ACAACAGATTGAAGCGGAAA+CGG 0.508186 3_2:+65112297 Msa0417790:CDS
TATCAAAATCCGCTTGCAAA+CGG 0.510414 3_2:-65112168 None:intergenic
ACGCCTCCAACACTATCTTA+GGG 0.513218 3_2:+65111684 Msa0417790:CDS
GGTGTAGGAAGCAATTATGT+TGG 0.513567 3_2:+65111435 None:intergenic
AAGGAAACCTTCACAAGTGC+TGG 0.513889 3_2:-65113633 None:intergenic
TGTGGAAGTTGTTTGTTGGT+TGG 0.515497 3_2:-65111500 None:intergenic
TTAATAAGGACCAATAAGCT+TGG 0.526487 3_2:-65111995 None:intergenic
TAACAAGATACCAGGTAAGC+AGG 0.530415 3_2:-65113783 None:intergenic
TGAAGGTTTCCTTAGGTCCC+GGG 0.534603 3_2:+65113643 Msa0417790:CDS
TACAATCAAAAGCAATTGAA+AGG 0.537877 3_2:+65112080 Msa0417790:CDS
GGAATCTTTGGAAGCGAAGA+GGG 0.541715 3_2:-65111732 None:intergenic
TTTGGAAGCGAAGAGGGAGG+AGG 0.559427 3_2:-65111726 None:intergenic
GAGTCCGAAGTGTTTAAGGA+AGG 0.560329 3_2:+65113555 Msa0417790:CDS
ATGATAAAACAGACGAGACT+CGG 0.560686 3_2:+65111948 Msa0417790:CDS
GAGGAGTCATCATGTTTCTG+TGG 0.562710 3_2:+65112381 Msa0417790:CDS
GTTTCTGTGGTAGCTACAGT+TGG 0.563597 3_2:+65112394 Msa0417790:CDS
AATCCCTTCCTTAAACACTT+CGG 0.563851 3_2:-65113559 None:intergenic
AGGAATCTTTGGAAGCGAAG+AGG 0.565783 3_2:-65111733 None:intergenic
TATCATAGACTATACTCACT+TGG 0.567328 3_2:-65113850 None:intergenic
ATAATTTCTGTATTAACGAA+CGG 0.567756 3_2:-65111537 None:intergenic
TGTAAGGCCAGCACTTGTGA+AGG 0.574016 3_2:+65113626 Msa0417790:CDS
GAGGCGTAAAAGGGGCGAGA+TGG 0.577768 3_2:-65111668 None:intergenic
AGCTGTTGATGGCTGCTCCA+AGG 0.578183 3_2:-65113697 None:intergenic
AAACCCTAAGATAGTGTTGG+AGG 0.580015 3_2:-65111687 None:intergenic
TTTGAGCAAGAAACCTCGAC+GGG 0.582305 3_2:-65113595 None:intergenic
ACATGAAGCCGTTGGACGTG+AGG 0.584494 3_2:+65113533 Msa0417790:CDS
TGTATTAACGAACGGTACGG+AGG 0.587127 3_2:-65111529 None:intergenic
TGGAAACCCTAAGATAGTGT+TGG 0.587421 3_2:-65111690 None:intergenic
TTCTGTATTAACGAACGGTA+CGG 0.588471 3_2:-65111532 None:intergenic
ATTATGTTGGGATTTATGCA+AGG 0.588887 3_2:+65111448 Msa0417790:five_prime_UTR
GCAATATCTCCGTTTGCAAG+CGG 0.589266 3_2:+65112159 Msa0417790:CDS
AGTCCGAAGTGTTTAAGGAA+GGG 0.590140 3_2:+65113556 Msa0417790:CDS
GGAAAATGAACGAAATTGGG+TGG 0.597271 3_2:-65111647 None:intergenic
CTTTAGGAAAAGATGTGAGA+AGG 0.603142 3_2:+65112192 Msa0417790:CDS
TTGCAGATACATGAAGCCGT+TGG 0.609028 3_2:+65113525 Msa0417790:intron
TTCGGACTCCTCACGTCCAA+CGG 0.617680 3_2:-65113541 None:intergenic
AGTTAAACAACAGATTGAAG+CGG 0.621582 3_2:+65112291 Msa0417790:CDS
ATCTTTGGAAGCGAAGAGGG+AGG 0.628356 3_2:-65111729 None:intergenic
GAAAGTATCTAGTTTATCGG+CGG 0.637283 3_2:+65112117 Msa0417790:CDS
TTGGTTGGTAATTACAGGAG+CGG 0.637514 3_2:-65111485 None:intergenic
TTTAGCAATAACAAGATACC+AGG 0.638195 3_2:-65113791 None:intergenic
TCATAGACTATACTCACTTG+GGG 0.638405 3_2:-65113848 None:intergenic
CTTTGAGCAAGAAACCTCGA+CGG 0.642365 3_2:-65113596 None:intergenic
GTATTAACGAACGGTACGGA+GGG 0.653879 3_2:-65111528 None:intergenic
TTAATACAGAAATTATACAA+TGG 0.659818 3_2:+65111544 Msa0417790:exon
CAAGATACCAGGTAAGCAGG+TGG 0.662145 3_2:-65113780 None:intergenic
TATTTCTTCAATCAACAATG+CGG 0.663325 3_2:-65112056 None:intergenic
TAGTGTTGGAGGCGTAAAAG+GGG 0.663351 3_2:-65111676 None:intergenic
ATAATTAAAGAATCCCGTCG+AGG 0.675021 3_2:+65113582 Msa0417790:CDS
ACGGTACGGAGGGTATGTTG+TGG 0.721912 3_2:-65111518 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATACTATATTTCTTTTTTA+GGG - chr3_2:65112830-65112849 None:intergenic 10.0%
!!! AAATACTATATTTCTTTTTT+AGG - chr3_2:65112831-65112850 None:intergenic 10.0%
!! TAAAAAAGAAATATAGTATT+TGG + chr3_2:65112830-65112849 Msa0417790:intron 10.0%
!! TGAAAAATTTATGAATTTAT+TGG + chr3_2:65113938-65113957 Msa0417790:three_prime_UTR 10.0%
!! TTAATACAGAAATTATACAA+TGG + chr3_2:65111544-65111563 Msa0417790:exon 15.0%
!!! ATACTATATTTCTTTTTTAG+GGG - chr3_2:65112829-65112848 None:intergenic 15.0%
!!! AACAAATTAGTTTTTTTGTT+TGG + chr3_2:65112982-65113001 Msa0417790:intron 15.0%
!!! ACAAATTAGTTTTTTTGTTT+GGG + chr3_2:65112983-65113002 Msa0417790:intron 15.0%
!!! AAAAACTGTAATTTGTAATT+TGG - chr3_2:65113142-65113161 None:intergenic 15.0%
!! ATAATTTCTGTATTAACGAA+CGG - chr3_2:65111540-65111559 None:intergenic 20.0%
!!! TTTCAAATTTAACTTACCAA+AGG - chr3_2:65112433-65112452 None:intergenic 20.0%
!!! AAAAATGTTTTTGCAAGAAT+TGG + chr3_2:65112949-65112968 Msa0417790:intron 20.0%
!!! TTTTGTTTGGGAATTTTATA+CGG + chr3_2:65112995-65113014 Msa0417790:intron 20.0%
!! AAATTAAACAATAGCAATGT+AGG - chr3_2:65113487-65113506 None:intergenic 20.0%
!!! GCTATTGTTTAATTTGTTTT+TGG + chr3_2:65113492-65113511 Msa0417790:intron 20.0%
! CTTTCTTGTATGCTTTAATA+AGG - chr3_2:65112012-65112031 None:intergenic 25.0%
! TATTTCTTCAATCAACAATG+CGG - chr3_2:65112059-65112078 None:intergenic 25.0%
! TACAATCAAAAGCAATTGAA+AGG + chr3_2:65112080-65112099 Msa0417790:CDS 25.0%
!!! TCAGAAAGTATCTAGTTTAT+CGG + chr3_2:65112114-65112133 Msa0417790:CDS 25.0%
! CATTAAAAAACTTCTGTTGA+TGG + chr3_2:65112252-65112271 Msa0417790:CDS 25.0%
! TAACTTACCAAAGGATTAAA+AGG - chr3_2:65112424-65112443 None:intergenic 25.0%
! CTGATTTAAATATCGATACA+AGG - chr3_2:65112459-65112478 None:intergenic 25.0%
! TTGTTCTATAATATGCTATG+TGG - chr3_2:65112616-65112635 None:intergenic 25.0%
! AGCATATTATAGAACAATAG+CGG + chr3_2:65112619-65112638 Msa0417790:intron 25.0%
! ATTATGGATTTATGACTGTA+AGG + chr3_2:65112698-65112717 Msa0417790:intron 25.0%
!! CTTTTAGTATCTTAAAATCG+TGG - chr3_2:65112750-65112769 None:intergenic 25.0%
!!! AGATGAGATGTTATTTGTTT+TGG + chr3_2:65112776-65112795 Msa0417790:intron 25.0%
!! TTTGTTTGGGAATTTTATAC+GGG + chr3_2:65112996-65113015 Msa0417790:intron 25.0%
!!! CTGTTTTTATGTTATGTCTA+AGG + chr3_2:65113094-65113113 Msa0417790:intron 25.0%
!! ATCAAATGACCTTTTCTTTA+TGG + chr3_2:65113173-65113192 Msa0417790:intron 25.0%
! TCAAATTAGCCATAAAGAAA+AGG - chr3_2:65113185-65113204 None:intergenic 25.0%
! TTTATGGCTAATTTGATTGT+TGG + chr3_2:65113189-65113208 Msa0417790:intron 25.0%
!!! TAGTTTTCAAGCATATAATG+TGG - chr3_2:65113404-65113423 None:intergenic 25.0%
! TATGCTTGAAAACTAAAATG+TGG + chr3_2:65113409-65113428 Msa0417790:intron 25.0%
! TTTCGATTCATCATTGAAAA+AGG + chr3_2:65113899-65113918 Msa0417790:three_prime_UTR 25.0%
! TTCGATTCATCATTGAAAAA+GGG + chr3_2:65113900-65113919 Msa0417790:three_prime_UTR 25.0%
! TTTCAAGAAAGAACAATTTC+TGG - chr3_2:65113982-65114001 None:intergenic 25.0%
ATTATGTTGGGATTTATGCA+AGG + chr3_2:65111448-65111467 Msa0417790:five_prime_UTR 30.0%
GATGGAAAATGAACGAAATT+GGG - chr3_2:65111653-65111672 None:intergenic 30.0%
AGATGGAAAATGAACGAAAT+TGG - chr3_2:65111654-65111673 None:intergenic 30.0%
TACACTTGAAAAGGAATCTT+TGG - chr3_2:65111747-65111766 None:intergenic 30.0%
!! CTTATTTTCATAAGCTCTTG+GGG - chr3_2:65111873-65111892 None:intergenic 30.0%
!! GCTTATTTTCATAAGCTCTT+GGG - chr3_2:65111874-65111893 None:intergenic 30.0%
!! AGCTTATTTTCATAAGCTCT+TGG - chr3_2:65111875-65111894 None:intergenic 30.0%
ACAAGATTTACCAAGCTTAT+TGG + chr3_2:65111985-65112004 Msa0417790:CDS 30.0%
TTAATAAGGACCAATAAGCT+TGG - chr3_2:65111998-65112017 None:intergenic 30.0%
TACAAGAAAGCCTTTCTTAA+CGG + chr3_2:65112022-65112041 Msa0417790:CDS 30.0%
!! AAGCGGATTTTGATAACTTT+AGG + chr3_2:65112176-65112195 Msa0417790:CDS 30.0%
GGAAAGAATTAGCATTCAAT+CGG + chr3_2:65112213-65112232 Msa0417790:CDS 30.0%
! TAAAAAACTTCTGTTGATGG+TGG + chr3_2:65112255-65112274 Msa0417790:CDS 30.0%
AGTTAAACAACAGATTGAAG+CGG + chr3_2:65112291-65112310 Msa0417790:CDS 30.0%
TTGTCAAACAACTTCTATAG+TGG - chr3_2:65112584-65112603 None:intergenic 30.0%
CAGATATTTGCTTGTGATTA+TGG + chr3_2:65112682-65112701 Msa0417790:intron 30.0%
!! GATTCGACAAAGTTTTATGT+TGG + chr3_2:65112866-65112885 Msa0417790:intron 30.0%
!! GTTTTTGCAAGAATTGGTTT+TGG + chr3_2:65112955-65112974 Msa0417790:intron 30.0%
!!! ATACATCTTACTTTTTCCTC+TGG + chr3_2:65113295-65113314 Msa0417790:intron 30.0%
AGAATAGACAAACTATCAAC+AGG - chr3_2:65113334-65113353 None:intergenic 30.0%
!! CTTGTTTTCCAATCATATCT+GGG + chr3_2:65113370-65113389 Msa0417790:intron 30.0%
TCATCTAATATGCCTTCTAT+AGG - chr3_2:65113447-65113466 None:intergenic 30.0%
!!! ACTGAAGATTTTTTATTCCC+GGG - chr3_2:65113663-65113682 None:intergenic 30.0%
!!! CACTGAAGATTTTTTATTCC+CGG - chr3_2:65113664-65113683 None:intergenic 30.0%
TTTAGCAATAACAAGATACC+AGG - chr3_2:65113794-65113813 None:intergenic 30.0%
ATCATAGACTATACTCACTT+GGG - chr3_2:65113852-65113871 None:intergenic 30.0%
TATCATAGACTATACTCACT+TGG - chr3_2:65113853-65113872 None:intergenic 30.0%
!! GTTTGTTGGTTGGTAATTAC+AGG - chr3_2:65111493-65111512 None:intergenic 35.0%
ATGTTGTGGAAGTTGTTTGT+TGG - chr3_2:65111507-65111526 None:intergenic 35.0%
TTCTGTATTAACGAACGGTA+CGG - chr3_2:65111535-65111554 None:intergenic 35.0%
TCTCTCGAATCAATCTCTAT+TGG + chr3_2:65111574-65111593 Msa0417790:CDS 35.0%
ATGATAAAACAGACGAGACT+CGG + chr3_2:65111948-65111967 Msa0417790:CDS 35.0%
!! GAAAGTATCTAGTTTATCGG+CGG + chr3_2:65112117-65112136 Msa0417790:CDS 35.0%
TATCAAAATCCGCTTGCAAA+CGG - chr3_2:65112171-65112190 None:intergenic 35.0%
! CTTTAGGAAAAGATGTGAGA+AGG + chr3_2:65112192-65112211 Msa0417790:CDS 35.0%
AGCAATTTGTAGAGACTTTG+AGG + chr3_2:65112362-65112381 Msa0417790:CDS 35.0%
TTGAGCAATGTTGTCAATCA+CGG + chr3_2:65112509-65112528 Msa0417790:intron 35.0%
ATAAAATTCCGCTGCACAAT+AGG + chr3_2:65112549-65112568 Msa0417790:intron 35.0%
TAAAATTCCGCTGCACAATA+GGG + chr3_2:65112550-65112569 Msa0417790:intron 35.0%
TAGTATTTGGTCGATGTCAT+AGG + chr3_2:65112843-65112862 Msa0417790:intron 35.0%
AGTATTTGGTCGATGTCATA+GGG + chr3_2:65112844-65112863 Msa0417790:intron 35.0%
! AATGTGAGTGGAGATTTGTT+TGG + chr3_2:65113020-65113039 Msa0417790:intron 35.0%
! ATGTGAGTGGAGATTTGTTT+GGG + chr3_2:65113021-65113040 Msa0417790:intron 35.0%
TCAACTCAAGTACTATCGAA+AGG + chr3_2:65113067-65113086 Msa0417790:intron 35.0%
CAACTCAAGTACTATCGAAA+GGG + chr3_2:65113068-65113087 Msa0417790:intron 35.0%
! ACAATTTAGCTCAGAGAATG+TGG - chr3_2:65113231-65113250 None:intergenic 35.0%
! AGGATATTTTCACTTTCCAG+AGG - chr3_2:65113314-65113333 None:intergenic 35.0%
!! GCTTGTTTTCCAATCATATC+TGG + chr3_2:65113369-65113388 Msa0417790:intron 35.0%
AAGCATATAATGTGGTTGAG+GGG - chr3_2:65113396-65113415 None:intergenic 35.0%
CAAGCATATAATGTGGTTGA+GGG - chr3_2:65113397-65113416 None:intergenic 35.0%
TCAAGCATATAATGTGGTTG+AGG - chr3_2:65113398-65113417 None:intergenic 35.0%
ACATCATTTCTGCCTATAGA+AGG + chr3_2:65113432-65113451 Msa0417790:intron 35.0%
AATCCCTTCCTTAAACACTT+CGG - chr3_2:65113562-65113581 None:intergenic 35.0%
ATAATTAAAGAATCCCGTCG+AGG + chr3_2:65113582-65113601 Msa0417790:CDS 35.0%
AGGTTTCTTGCTCAAAGATA+AGG + chr3_2:65113602-65113621 Msa0417790:CDS 35.0%
TGCTCAAAGATAAGGTTGTA+AGG + chr3_2:65113610-65113629 Msa0417790:CDS 35.0%
CGGGAATAAAAAATCTTCAG+TGG + chr3_2:65113662-65113681 Msa0417790:CDS 35.0%
GAAATGCTTCTGTTGTTCTA+TGG + chr3_2:65113817-65113836 Msa0417790:three_prime_UTR 35.0%
TCTGTTGTTCTATGGTATGT+TGG + chr3_2:65113825-65113844 Msa0417790:three_prime_UTR 35.0%
TCATAGACTATACTCACTTG+GGG - chr3_2:65113851-65113870 None:intergenic 35.0%
AACTCTACGCATCAAAATCA+TGG - chr3_2:65114022-65114041 None:intergenic 35.0%
! GTTTTTACAACATGTAACGC+AGG + chr3_2:65114039-65114058 Msa0417790:three_prime_UTR 35.0%
GGATTTATGCAAGGTGCATA+AGG + chr3_2:65111457-65111476 Msa0417790:five_prime_UTR 40.0%
!! TTGGTTGGTAATTACAGGAG+CGG - chr3_2:65111488-65111507 None:intergenic 40.0%
! TGTGGAAGTTGTTTGTTGGT+TGG - chr3_2:65111503-65111522 None:intergenic 40.0%
! TGAACGAAATTGGGTGGTTT+TGG - chr3_2:65111644-65111663 None:intergenic 40.0%
GGAAAATGAACGAAATTGGG+TGG - chr3_2:65111650-65111669 None:intergenic 40.0%
! ATAGTGTTGGAGGCGTAAAA+GGG - chr3_2:65111680-65111699 None:intergenic 40.0%
! AAACCCTAAGATAGTGTTGG+AGG - chr3_2:65111690-65111709 None:intergenic 40.0%
TGGAAACCCTAAGATAGTGT+TGG - chr3_2:65111693-65111712 None:intergenic 40.0%
TGCAAAAACAAGACAGAGAG+AGG - chr3_2:65111921-65111940 None:intergenic 40.0%
CTTTCTATCGCCGTTAAGAA+AGG - chr3_2:65112035-65112054 None:intergenic 40.0%
ACAACAGATTGAAGCGGAAA+CGG + chr3_2:65112297-65112316 Msa0417790:CDS 40.0%
! TGGCAAGCCTTTTAATCCTT+TGG + chr3_2:65112414-65112433 Msa0417790:CDS 40.0%
! ATGTTGTCAATCACGGATTG+CGG + chr3_2:65112516-65112535 Msa0417790:intron 40.0%
! TTTTATACGGGCAATGTGAG+TGG + chr3_2:65113008-65113027 Msa0417790:intron 40.0%
! ATGTTATGTCTAAGGCCTCA+TGG + chr3_2:65113102-65113121 Msa0417790:intron 40.0%
! TGTTATGTCTAAGGCCTCAT+GGG + chr3_2:65113103-65113122 Msa0417790:intron 40.0%
!! GTCTTTTGATTGCACTGTCA+CGG + chr3_2:65113249-65113268 Msa0417790:intron 40.0%
!! TCTTTTGATTGCACTGTCAC+GGG + chr3_2:65113250-65113269 Msa0417790:intron 40.0%
TGATTGGAAAACAAGCAGCA+TGG - chr3_2:65113365-65113384 None:intergenic 40.0%
! AGTCCGAAGTGTTTAAGGAA+GGG + chr3_2:65113556-65113575 Msa0417790:CDS 40.0%
!!! TTTTTTATTCCCGGGACCTA+AGG - chr3_2:65113655-65113674 None:intergenic 40.0%
TCAATTCTAGCAGCTGTTGA+TGG - chr3_2:65113711-65113730 None:intergenic 40.0%
TAACAAGATACCAGGTAAGC+AGG - chr3_2:65113786-65113805 None:intergenic 40.0%
GTATTAACGAACGGTACGGA+GGG - chr3_2:65111531-65111550 None:intergenic 45.0%
TGTATTAACGAACGGTACGG+AGG - chr3_2:65111532-65111551 None:intergenic 45.0%
! TAGTGTTGGAGGCGTAAAAG+GGG - chr3_2:65111679-65111698 None:intergenic 45.0%
! GATAGTGTTGGAGGCGTAAA+AGG - chr3_2:65111681-65111700 None:intergenic 45.0%
TACGCCTCCAACACTATCTT+AGG + chr3_2:65111683-65111702 Msa0417790:CDS 45.0%
ACGCCTCCAACACTATCTTA+GGG + chr3_2:65111684-65111703 Msa0417790:CDS 45.0%
! GGAATCTTTGGAAGCGAAGA+GGG - chr3_2:65111735-65111754 None:intergenic 45.0%
! AGGAATCTTTGGAAGCGAAG+AGG - chr3_2:65111736-65111755 None:intergenic 45.0%
! GAGAGAGCGTACACTTGAAA+AGG - chr3_2:65111756-65111775 None:intergenic 45.0%
GCAATATCTCCGTTTGCAAG+CGG + chr3_2:65112159-65112178 Msa0417790:CDS 45.0%
! GAGGAGTCATCATGTTTCTG+TGG + chr3_2:65112381-65112400 Msa0417790:CDS 45.0%
GTTTCTGTGGTAGCTACAGT+TGG + chr3_2:65112394-65112413 Msa0417790:CDS 45.0%
! GAGAATGTGGCAGGAGTATA+GGG - chr3_2:65113218-65113237 None:intergenic 45.0%
! AGAGAATGTGGCAGGAGTAT+AGG - chr3_2:65113219-65113238 None:intergenic 45.0%
! TTTAGCTCAGAGAATGTGGC+AGG - chr3_2:65113227-65113246 None:intergenic 45.0%
TTGCAGATACATGAAGCCGT+TGG + chr3_2:65113525-65113544 Msa0417790:intron 45.0%
! TGAGGAGTCCGAAGTGTTTA+AGG + chr3_2:65113551-65113570 Msa0417790:CDS 45.0%
! GAGTCCGAAGTGTTTAAGGA+AGG + chr3_2:65113555-65113574 Msa0417790:CDS 45.0%
TTTGAGCAAGAAACCTCGAC+GGG - chr3_2:65113598-65113617 None:intergenic 45.0%
CTTTGAGCAAGAAACCTCGA+CGG - chr3_2:65113599-65113618 None:intergenic 45.0%
AAGGAAACCTTCACAAGTGC+TGG - chr3_2:65113636-65113655 None:intergenic 45.0%
GCACTTGTGAAGGTTTCCTT+AGG + chr3_2:65113636-65113655 Msa0417790:CDS 45.0%
GAGGAGGTTGGATTGAGAGT+TGG - chr3_2:65111713-65111732 None:intergenic 50.0%
! ATCTTTGGAAGCGAAGAGGG+AGG - chr3_2:65111732-65111751 None:intergenic 50.0%
GCTATAGCCCTATTGTGCAG+CGG - chr3_2:65112560-65112579 None:intergenic 50.0%
TTGAGGGGCCCAGATATGAT+TGG - chr3_2:65113381-65113400 None:intergenic 50.0%
TGTAAGGCCAGCACTTGTGA+AGG + chr3_2:65113626-65113645 Msa0417790:CDS 50.0%
GTGAAGGTTTCCTTAGGTCC+CGG + chr3_2:65113642-65113661 Msa0417790:CDS 50.0%
TGAAGGTTTCCTTAGGTCCC+GGG + chr3_2:65113643-65113662 Msa0417790:CDS 50.0%
CAAGATACCAGGTAAGCAGG+TGG - chr3_2:65113783-65113802 None:intergenic 50.0%
! ACGGTACGGAGGGTATGTTG+TGG - chr3_2:65111521-65111540 None:intergenic 55.0%
TTTGGAAGCGAAGAGGGAGG+AGG - chr3_2:65111729-65111748 None:intergenic 55.0%
! GTCTAAGGCCTCATGGGACT+TGG + chr3_2:65113109-65113128 Msa0417790:intron 55.0%
GTTTGCAGCCAAGTCCCATG+AGG - chr3_2:65113120-65113139 None:intergenic 55.0%
ACATGAAGCCGTTGGACGTG+AGG + chr3_2:65113533-65113552 Msa0417790:CDS 55.0%
TTCGGACTCCTCACGTCCAA+CGG - chr3_2:65113544-65113563 None:intergenic 55.0%
AGTGGCATCTACCCAGTCCT+TGG + chr3_2:65113680-65113699 Msa0417790:CDS 55.0%
TGATGGCTGCTCCAAGGACT+GGG - chr3_2:65113694-65113713 None:intergenic 55.0%
! TTGATGGCTGCTCCAAGGAC+TGG - chr3_2:65113695-65113714 None:intergenic 55.0%
!! AGCTGTTGATGGCTGCTCCA+AGG - chr3_2:65113700-65113719 None:intergenic 55.0%
CCAGGTAAGCAGGTGGAACT+AGG - chr3_2:65113776-65113795 None:intergenic 55.0%
CCTAGTTCCACCTGCTTACC+TGG + chr3_2:65113773-65113792 Msa0417790:three_prime_UTR 55.0%
GAGGCGTAAAAGGGGCGAGA+TGG - chr3_2:65111671-65111690 None:intergenic 60.0%
GAAGCGAAGAGGGAGGAGGT+TGG - chr3_2:65111725-65111744 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 65111444 65114101 65111444 ID=Msa0417790;Name=Msa0417790
chr3_2 mRNA 65111444 65114101 65111444 ID=Msa0417790-mRNA-1;Parent=Msa0417790;Name=Msa0417790-mRNA-1;_AED=0.02;_eAED=0.02;_QI=119|1|1|1|1|1|3|361|300
chr3_2 exon 65111444 65111763 65111444 ID=Msa0417790-mRNA-1:exon:14608;Parent=Msa0417790-mRNA-1
chr3_2 exon 65111944 65112435 65111944 ID=Msa0417790-mRNA-1:exon:14609;Parent=Msa0417790-mRNA-1
chr3_2 exon 65113531 65114101 65113531 ID=Msa0417790-mRNA-1:exon:14610;Parent=Msa0417790-mRNA-1
chr3_2 five_prime_UTR 65111444 65111562 65111444 ID=Msa0417790-mRNA-1:five_prime_utr;Parent=Msa0417790-mRNA-1
chr3_2 CDS 65111563 65111763 65111563 ID=Msa0417790-mRNA-1:cds;Parent=Msa0417790-mRNA-1
chr3_2 CDS 65111944 65112435 65111944 ID=Msa0417790-mRNA-1:cds;Parent=Msa0417790-mRNA-1
chr3_2 CDS 65113531 65113740 65113531 ID=Msa0417790-mRNA-1:cds;Parent=Msa0417790-mRNA-1
chr3_2 three_prime_UTR 65113741 65114101 65113741 ID=Msa0417790-mRNA-1:three_prime_utr;Parent=Msa0417790-mRNA-1
Gene Sequence

>Msa0417790

ATGGCTACTTCTCTCTCGAATCAATCTCTATTGGCTTGTTCTTCTTCATCATCTTCTTCTTCATTCTCTTCAAAATCTCCAAAACCACCCAATTTCGTTCATTTTCCATCTCGCCCCTTTTACGCCTCCAACACTATCTTAGGGTTTCCAACTCTCAATCCAACCTCCTCCCTCTTCGCTTCCAAAGATTCCTTTTCAAGTACAAATGATAAAACAGACGAGACTCGGAATGATGAAGATAAACAAGATTTACCAAGCTTATTGGTCCTTATTAAAGCATACAAGAAAGCCTTTCTTAACGGCGATAGAAAGACCGCATTGTTGATTGAAGAAATAATACAATCAAAAGCAATTGAAAGGAATAAATTGATTCAGAAAGTATCTAGTTTATCGGCGGATAAAGTTTCTTGTAAAGAGCAATATCTCCGTTTGCAAGCGGATTTTGATAACTTTAGGAAAAGATGTGAGAAGGAAAGAATTAGCATTCAATCGGATGCTCAGCAAGAATTCATTAAAAAACTTCTGTTGATGGTGGACAGTTTTGAGAGAGTTAAACAACAGATTGAAGCGGAAACGGAGAAAGAGAAGAAGATTGATGCGAGCTATCAAAGTCTTTACAAGCAATTTGTAGAGACTTTGAGGAGTCATCATGTTTCTGTGGTAGCTACAGTTGGCAAGCCTTTTAATCCTTTGATACATGAAGCCGTTGGACGTGAGGAGTCCGAAGTGTTTAAGGAAGGGATTATAATTAAAGAATCCCGTCGAGGTTTCTTGCTCAAAGATAAGGTTGTAAGGCCAGCACTTGTGAAGGTTTCCTTAGGTCCCGGGAATAAAAAATCTTCAGTGGCATCTACCCAGTCCTTGGAGCAGCCATCAACAGCTGCTAGAATTGATGAAAGATAA

Protein sequence

>Msa0417790

MATSLSNQSLLACSSSSSSSSFSSKSPKPPNFVHFPSRPFYASNTILGFPTLNPTSSLFASKDSFSSTNDKTDETRNDEDKQDLPSLLVLIKAYKKAFLNGDRKTALLIEEIIQSKAIERNKLIQKVSSLSADKVSCKEQYLRLQADFDNFRKRCEKERISIQSDAQQEFIKKLLLMVDSFERVKQQIEAETEKEKKIDASYQSLYKQFVETLRSHHVSVVATVGKPFNPLIHEAVGREESEVFKEGIIIKESRRGFLLKDKVVRPALVKVSLGPGNKKSSVASTQSLEQPSTAARIDER*