AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1146010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1146010 MtrunA17_Chr7g0247841 98.639 441 6 0 1 441 1 441 0.0 884
Msa1146010 MtrunA17_Chr8g0348831 81.193 436 75 3 7 441 15 444 0.0 717
Msa1146010 MtrunA17_Chr6g0475601 69.194 422 126 3 21 441 27 445 0.0 605
Msa1146010 MtrunA17_Chr7g0214221 50.356 421 206 2 22 441 30 448 3.39e-141 414
Msa1146010 MtrunA17_Chr1g0213851 56.129 155 66 1 287 441 1 153 8.84e-56 185
Msa1146010 MtrunA17_Chr1g0213841 45.133 113 61 1 174 285 6 118 9.65e-24 95.9
Msa1146010 MtrunA17_Chr1g0213831 33.673 98 65 0 37 134 30 127 6.34e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1146010 AT1G01650.1 72.644 435 118 1 8 441 12 446 0.0 658
Msa1146010 AT1G63690.1 72.684 421 111 3 22 441 27 444 0.0 622
Msa1146010 AT1G63690.2 72.447 421 112 3 22 441 27 444 0.0 621
Msa1146010 AT1G01650.3 74.013 304 78 1 139 441 1 304 1.02e-162 464
Msa1146010 AT1G01650.4 74.013 304 78 1 139 441 1 304 1.02e-162 464
Msa1146010 AT1G01650.2 74.013 304 78 1 139 441 1 304 1.02e-162 464
Msa1146010 AT2G43070.2 46.838 427 218 3 22 441 28 452 2.21e-131 390
Msa1146010 AT2G43070.1 47.268 421 219 2 22 441 28 446 3.20e-131 389
Msa1146010 AT2G43070.3 47.268 421 219 2 22 441 87 505 1.87e-130 389
Msa1146010 AT2G43070.4 46.838 427 218 3 22 441 87 511 2.13e-130 389
Msa1146010 AT1G05820.2 44.712 416 226 3 28 441 30 443 1.85e-116 350
Msa1146010 AT1G05820.1 44.712 416 226 3 28 441 30 443 5.53e-116 350
Msa1146010 AT1G05820.3 41.910 377 215 3 28 402 30 404 1.39e-93 289
Msa1146010 AT1G05820.4 46.885 305 158 3 139 441 1 303 2.58e-91 282

Find 146 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCTTGAGGTTTGGTATT+TGG 0.124495 7_4:-23072957 None:intergenic
CCATTCTCTGTGCTTCTTAC+TGG 0.166120 7_4:+23071601 Msa1146010:CDS
CTTCTTCTTCTCTGTGTTCA+TGG 0.169898 7_4:+23068933 Msa1146010:CDS
TCCACACCATCAATTGAAAT+TGG 0.185349 7_4:-23070621 None:intergenic
CTTCTTTCCCAATGACAAAA+AGG 0.201334 7_4:-23074276 None:intergenic
GGTTACAGTGTCATCGGTTT+CGG 0.211475 7_4:+23073367 Msa1146010:CDS
CATAGCATTCGCTGTGGTTT+GGG 0.211873 7_4:+23072705 Msa1146010:CDS
CCTTCCTATATGACATCTTC+TGG 0.226829 7_4:+23073117 Msa1146010:CDS
GTTTATGCTTTACAAACTAA+TGG 0.249829 7_4:+23071997 Msa1146010:CDS
TGAGCAAGAGAAGCTATTAA+AGG 0.254085 7_4:+23071653 Msa1146010:CDS
GTTACAGTGTCATCGGTTTC+GGG 0.257862 7_4:+23073368 Msa1146010:CDS
ATACATAGCTTTGAATTTGA+TGG 0.290429 7_4:+23073793 Msa1146010:three_prime_UTR
AATGAAACCGATATTGATAT+TGG 0.297635 7_4:+23071278 Msa1146010:CDS
AAAGTTCCAATTTCAATTGA+TGG 0.322977 7_4:+23070615 Msa1146010:CDS
TTGTCACATCCAGGTTTCTT+AGG 0.323154 7_4:-23069009 None:intergenic
AACTAGAATACCTTATTCTT+AGG 0.323199 7_4:-23070759 None:intergenic
GCATAGCATTCGCTGTGGTT+TGG 0.331467 7_4:+23072704 Msa1146010:CDS
ACCGCGTTTATTCGATCCTT+GGG 0.332274 7_4:+23073342 Msa1146010:CDS
CTTTAGCGTTATTTATAATC+AGG 0.343087 7_4:-23071009 None:intergenic
GCTCACGGGCGAGATCATTT+TGG 0.348166 7_4:+23070919 Msa1146010:intron
GGGTATCGCTTTGATAATTA+CGG 0.355376 7_4:+23072921 Msa1146010:intron
TTGTAGCAAACCTAAGAATA+AGG 0.355750 7_4:+23070749 Msa1146010:CDS
AAGATGGTTCATTGATGTTC+TGG 0.357441 7_4:+23072021 Msa1146010:CDS
GTCGGTGTTGGTGCAAGATT+TGG 0.369570 7_4:+23070657 Msa1146010:CDS
CGGCAATGGCAACTCTAGTA+TGG 0.378558 7_4:-23070713 None:intergenic
TTCTTCAGCTATATTTGCCT+TGG 0.386977 7_4:-23070969 None:intergenic
TTTATGCTTTACAAACTAAT+GGG 0.398548 7_4:+23071998 Msa1146010:CDS
GTGAGAATCTTGATTGTAGA+TGG 0.398863 7_4:-23068877 None:intergenic
ATATACTTTACAGGTATGAT+TGG 0.401660 7_4:+23073594 Msa1146010:intron
CGCGGTATCTTGAGCAGCAT+GGG 0.404406 7_4:-23073325 None:intergenic
AGGTATTCCAATATCAATAT+CGG 0.409099 7_4:-23071285 None:intergenic
ACGATGAGTGCCTATGGTTT+AGG 0.409248 7_4:+23073656 Msa1146010:three_prime_UTR
CCAAAGTACAAACAGATTCA+TGG 0.410036 7_4:-23074584 None:intergenic
ATGTGACAACAACTTTGTTC+TGG 0.416582 7_4:+23069023 Msa1146010:CDS
TACCGCGTTTATTCGATCCT+TGG 0.419818 7_4:+23073341 Msa1146010:CDS
ATAATCATCACCTTGAGGTT+TGG 0.432877 7_4:-23072964 None:intergenic
GGGACTGCAAACTTGCTTAG+TGG 0.435026 7_4:+23072436 Msa1146010:intron
ATTTGAGGTGTGAAAAGAAA+AGG 0.437729 7_4:-23068852 None:intergenic
TTTGAGGTGTGAAAAGAAAA+GGG 0.438964 7_4:-23068851 None:intergenic
AAGAATATCTTGACCAATCC+AGG 0.442943 7_4:-23072752 None:intergenic
TCCAATTTCAATTGATGGTG+TGG 0.445372 7_4:+23070620 Msa1146010:CDS
TTTACTAACCAAGTGTAAAT+GGG 0.447535 7_4:-23073850 None:intergenic
CCATGAATCTGTTTGTACTT+TGG 0.451169 7_4:+23074584 Msa1146010:three_prime_UTR
TGGTAGTACAAAGGAGGAAG+AGG 0.452624 7_4:-23068770 None:intergenic
GTGCTTCTTACTGGTCTGCC+TGG 0.461814 7_4:+23071610 Msa1146010:CDS
GGAGACTTATAACAAATCAT+AGG 0.463251 7_4:+23074425 Msa1146010:three_prime_UTR
AACACCCTCTCTGGCAGTCC+AGG 0.466046 7_4:-23071628 None:intergenic
CTTCCTATATGACATCTTCT+GGG 0.469044 7_4:+23073118 Msa1146010:CDS
TTTACAAACTAATGGGAAGA+TGG 0.472450 7_4:+23072005 Msa1146010:CDS
CCCTCTTGACTGTTAGATGT+TGG 0.473230 7_4:+23074556 Msa1146010:three_prime_UTR
TGGGGTGGTTACAGTGTCAT+CGG 0.481076 7_4:+23073361 Msa1146010:CDS
ACACCCAGAAGATGTCATAT+AGG 0.489454 7_4:-23073121 None:intergenic
ACAAAGTTGTTGTCACATCC+AGG 0.490168 7_4:-23069018 None:intergenic
TAGCTTTGAATTTGATGGAT+GGG 0.490494 7_4:+23073798 Msa1146010:three_prime_UTR
GCGGGAGATTACTCGTCTAC+TGG 0.490969 7_4:-23074374 None:intergenic
TTAGGTTTGCTACAACAGTC+AGG 0.492193 7_4:-23070741 None:intergenic
TGCAAGATTTGGACCTACAT+TGG 0.494196 7_4:+23070668 Msa1146010:CDS
TTGCTCAATAACACCCTCTC+TGG 0.497863 7_4:-23071637 None:intergenic
AACACAGAGAAGAAGAAGAT+AGG 0.498115 7_4:-23068928 None:intergenic
ACCTGCTGTCATGCTTCCAC+TGG 0.500327 7_4:+23071304 Msa1146010:CDS
ATGTGAAACAGCACCGAAGA+AGG 0.501888 7_4:-23072656 None:intergenic
ATACTCTCCACGACGTCCAC+AGG 0.502854 7_4:+23071536 Msa1146010:CDS
TCTTGACTGTTAGATGTTGG+AGG 0.506148 7_4:+23074559 Msa1146010:three_prime_UTR
TATGTGAAAGTACCCTTCTT+CGG 0.508554 7_4:+23072643 Msa1146010:CDS
CCATGAGAGTGTGATGATAG+TGG 0.511765 7_4:+23073163 Msa1146010:CDS
AAGAAGATAGGTGTAAAAGA+AGG 0.514055 7_4:-23068916 None:intergenic
CTGATTATAAATAACGCTAA+AGG 0.517532 7_4:+23071010 Msa1146010:CDS
GTCATGCTTCCACTGGATGC+CGG 0.519867 7_4:+23071311 Msa1146010:CDS
TTGTGGACGATGAGTGCCTA+TGG 0.521690 7_4:+23073650 Msa1146010:three_prime_UTR
CCACTATCATCACACTCTCA+TGG 0.522407 7_4:-23073163 None:intergenic
GGGACTATATACAGCAAAGC+TGG 0.523296 7_4:-23073830 None:intergenic
CCAGTAAGAAGCACAGAGAA+TGG 0.528439 7_4:-23071601 None:intergenic
GAGGAAGAGGAAATCGTGAA+GGG 0.528619 7_4:-23068757 None:intergenic
TCCAACATCTAACAGTCAAG+AGG 0.532187 7_4:-23074557 None:intergenic
GCAAATATAGCTGAAGAAGC+TGG 0.537504 7_4:+23070974 Msa1146010:CDS
TGAAGGTGGTAGTACAAAGG+AGG 0.538672 7_4:-23068776 None:intergenic
GTGCCTTGTACAATATCGTT+AGG 0.539714 7_4:-23074501 None:intergenic
TCTGCCTGGACTGCCAGAGA+GGG 0.540666 7_4:+23071624 Msa1146010:CDS
TTCGAGCAGGATACTTCTTG+TGG 0.550885 7_4:+23073633 Msa1146010:three_prime_UTR
CGAAAATGCTACTAAAGCCC+TGG 0.552221 7_4:-23073403 None:intergenic
CGTGTATCGTATGCCTGGAT+TGG 0.553817 7_4:+23072739 Msa1146010:CDS
AGTATTGCTCCTAAGAAACC+TGG 0.554160 7_4:+23069000 Msa1146010:CDS
AGCGTTATTTATAATCAGGA+TGG 0.554823 7_4:-23071005 None:intergenic
CAGCCTAACGATATTGTACA+AGG 0.555015 7_4:+23074498 Msa1146010:three_prime_UTR
GTCTGCCTGGACTGCCAGAG+AGG 0.555701 7_4:+23071623 Msa1146010:CDS
ACGCGGTATCTTGAGCAGCA+TGG 0.557275 7_4:-23073326 None:intergenic
TCCTCTTTGATGTGAGGGCA+AGG 0.564220 7_4:-23074344 None:intergenic
ATAGCTTTGAATTTGATGGA+TGG 0.564608 7_4:+23073797 Msa1146010:three_prime_UTR
CTTCTAAATATAGAGAATGC+TGG 0.565274 7_4:+23071905 Msa1146010:CDS
ATGGTTCATTGATGTTCTGG+TGG 0.565632 7_4:+23072024 Msa1146010:CDS
CAGCGAATGCTATGCAGAAG+GGG 0.567384 7_4:-23072696 None:intergenic
TCCAGTGGAAGCATGACAGC+AGG 0.569868 7_4:-23071305 None:intergenic
GGTGATAAGAGTGGAGAAGA+TGG 0.570626 7_4:+23073298 Msa1146010:CDS
AACCTACAATACTATTCCGC+GGG 0.570740 7_4:-23074392 None:intergenic
CTATAGCATACCTAAACCAT+AGG 0.572085 7_4:-23073666 None:intergenic
TCAATTGATGGTGTGGAAAG+CGG 0.573126 7_4:+23070627 Msa1146010:CDS
ATAGCATTCGCTGTGGTTTG+GGG 0.575530 7_4:+23072706 Msa1146010:CDS
AGCGGCGAGTATGTCGGTGT+TGG 0.576766 7_4:+23070645 Msa1146010:CDS
ACAGCGAATGCTATGCAGAA+GGG 0.578803 7_4:-23072697 None:intergenic
TGATGATCCTCTTTGATGTG+AGG 0.582482 7_4:-23074350 None:intergenic
TATATAGTCCCATTTACACT+TGG 0.584363 7_4:+23073842 Msa1146010:three_prime_UTR
AAAATGTTCATAGTTTCAGA+TGG 0.586719 7_4:+23072599 Msa1146010:intron
AGATGAAGGTGGTAGTACAA+AGG 0.588109 7_4:-23068779 None:intergenic
AAGGCTTCACCGGCATCCAG+TGG 0.588506 7_4:-23071320 None:intergenic
CGTTTATTCGATCCTTGGGG+TGG 0.589284 7_4:+23073346 Msa1146010:CDS
CAATCCAGGCATACGATACA+CGG 0.590284 7_4:-23072738 None:intergenic
GCGAAGAGGAACCTTCGAGC+AGG 0.593050 7_4:+23073620 Msa1146010:three_prime_UTR
TATATACAAAACAAGTCCAC+AGG 0.595990 7_4:+23071350 Msa1146010:CDS
TTGAGGTGTGAAAAGAAAAG+GGG 0.596596 7_4:-23068850 None:intergenic
CACAGCGAATGCTATGCAGA+AGG 0.597296 7_4:-23072698 None:intergenic
TTGAATTTGATGGATGGGCA+TGG 0.598006 7_4:+23073803 Msa1146010:three_prime_UTR
TTGTCATTGGGAAAGAAGAG+AGG 0.601284 7_4:+23074281 Msa1146010:three_prime_UTR
CCAGAAGATGTCATATAGGA+AGG 0.604622 7_4:-23073117 None:intergenic
CCAACATCTAACAGTCAAGA+GGG 0.606250 7_4:-23074556 None:intergenic
TTGTGAAACTACATTGTCCT+CGG 0.612612 7_4:-23070946 None:intergenic
TGTCCAAATACCAAACCTCA+AGG 0.614521 7_4:+23072954 Msa1146010:CDS
GATGATCCTCTTTGATGTGA+GGG 0.616637 7_4:-23074349 None:intergenic
AAACCTACAATACTATTCCG+CGG 0.619560 7_4:-23074393 None:intergenic
GGTGTGAAAAGAAAAGGGGT+TGG 0.620289 7_4:-23068846 None:intergenic
TGTGAAACAGCACCGAAGAA+GGG 0.620570 7_4:-23072655 None:intergenic
GCTACAACAGTCAGGAGGGT+CGG 0.621755 7_4:-23070733 None:intergenic
AGGAAGAGGAAATCGTGAAG+GGG 0.624384 7_4:-23068756 None:intergenic
GGTATGATTGGTTAGCGAAG+AGG 0.627965 7_4:+23073606 Msa1146010:intron
ACAGTCAGGAGGGTCGGCAA+TGG 0.630961 7_4:-23070727 None:intergenic
GTAGCTCGCGGTGATAAGAG+TGG 0.630975 7_4:+23073289 Msa1146010:CDS
GTTTGCTACAACAGTCAGGA+GGG 0.632295 7_4:-23070737 None:intergenic
GTGGAAAGCGGCGAGTATGT+CGG 0.632476 7_4:+23070639 Msa1146010:CDS
TGATTGTAGATGGAAATTTG+AGG 0.635882 7_4:-23068867 None:intergenic
GGAGGAAGAGGAAATCGTGA+AGG 0.636135 7_4:-23068758 None:intergenic
CCGCGTTTATTCGATCCTTG+GGG 0.643328 7_4:+23073343 Msa1146010:CDS
ACATCGACCTGTGGACGTCG+TGG 0.644315 7_4:-23071543 None:intergenic
ACAAGAAGTATCCTGCTCGA+AGG 0.648586 7_4:-23073631 None:intergenic
TTACAGTGTCATCGGTTTCG+GGG 0.651346 7_4:+23073369 Msa1146010:CDS
AACGAATGAAAGTGCTGCCG+TGG 0.651931 7_4:-23071954 None:intergenic
GGTTTGCTACAACAGTCAGG+AGG 0.652355 7_4:-23070738 None:intergenic
GCCTTGCCCTCACATCAAAG+AGG 0.653911 7_4:+23074343 Msa1146010:three_prime_UTR
TCAAAGCTATGTATGTGACA+AGG 0.659484 7_4:-23073784 None:intergenic
ACAATGTAGTTTCACAACCA+AGG 0.675341 7_4:+23070952 Msa1146010:CDS
AGCGAATGCTATGCAGAAGG+GGG 0.677222 7_4:-23072695 None:intergenic
ACTTCTTTACAGGTAGCTCG+CGG 0.683752 7_4:+23073277 Msa1146010:intron
CTTCTGCATAGCATTCGCTG+TGG 0.687281 7_4:+23072699 Msa1146010:CDS
GCGGTATCTTGAGCAGCATG+GGG 0.687520 7_4:-23073324 None:intergenic
ACTTCTGCAACATCGACCTG+TGG 0.688487 7_4:-23071552 None:intergenic
ATGACACTGTAACCACCCCA+AGG 0.695167 7_4:-23073358 None:intergenic
CCCCAAGGATCGAATAAACG+CGG 0.705852 7_4:-23073343 None:intergenic
AGTAGACGAGTAATCTCCCG+CGG 0.729711 7_4:+23074376 Msa1146010:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGATATATAGAAATTTA+TGG + chr7_4:23072859-23072878 Msa1146010:intron 10.0%
!! TATATCTTTGTAAAGAAAAA+TGG - chr7_4:23068808-23068827 None:intergenic 15.0%
!!! TTAATAGAATTGATTTCTAT+TGG + chr7_4:23069459-23069478 Msa1146010:intron 15.0%
!! ACTTTCTAATAGTTAATAAA+GGG - chr7_4:23069733-23069752 None:intergenic 15.0%
!! AAAAAAATAAATTACACTAC+AGG - chr7_4:23071080-23071099 None:intergenic 15.0%
!!! AAAATTTAGTATTGGAAAAA+AGG - chr7_4:23071104-23071123 None:intergenic 15.0%
!!! TTTTGTTTTTCTAACAAATT+AGG - chr7_4:23071171-23071190 None:intergenic 15.0%
!!! GTTTTGTATATATTTTTTCA+AGG - chr7_4:23071342-23071361 None:intergenic 15.0%
!!! AATGTTATGTATTTTGTTAA+TGG + chr7_4:23073547-23073566 Msa1146010:intron 15.0%
!! TAACAAATCAAAAAAAATAG+CGG + chr7_4:23073948-23073967 Msa1146010:intron 15.0%
!! ATATACCAAAATTAGCATAA+TGG - chr7_4:23069572-23069591 None:intergenic 20.0%
!!! AAAAAAGAGTAAGTTTTAAG+TGG - chr7_4:23069691-23069710 None:intergenic 20.0%
!!! AGTTAATAAAGGGTAATTTT+TGG - chr7_4:23069723-23069742 None:intergenic 20.0%
!! CACTTTCTAATAGTTAATAA+AGG - chr7_4:23069734-23069753 None:intergenic 20.0%
!! TATTAACTATTAGAAAGTGA+TGG + chr7_4:23069735-23069754 Msa1146010:intron 20.0%
!! AAGAATGAGAAAAATTCTTA+AGG + chr7_4:23069770-23069789 Msa1146010:intron 20.0%
!! TATTATTTATAAGCTTGTCA+AGG - chr7_4:23070031-23070050 None:intergenic 20.0%
!! AAAAAAAGAAGTTAATGTTG+AGG + chr7_4:23070362-23070381 Msa1146010:intron 20.0%
!! AATGTATTCAAAGTTTGAAA+TGG + chr7_4:23070390-23070409 Msa1146010:intron 20.0%
!! TACTCATAGAAAATAGAAAT+AGG - chr7_4:23070532-23070551 None:intergenic 20.0%
!!! TATTTTCTATGAGTATTGAT+AGG + chr7_4:23070537-23070556 Msa1146010:intron 20.0%
!! ATAGAACATACTGAAAAATA+AGG + chr7_4:23070789-23070808 Msa1146010:intron 20.0%
!!! AAATTCTAGAGCTTTTAATA+TGG - chr7_4:23070852-23070871 None:intergenic 20.0%
!! ACAAACTGAAAATTTAGTAT+TGG - chr7_4:23071112-23071131 None:intergenic 20.0%
!!! AATACTAAATTTTCAGTTTG+TGG + chr7_4:23071111-23071130 Msa1146010:intron 20.0%
!!! ATTTTATATCCTTATTTTGC+AGG + chr7_4:23071233-23071252 Msa1146010:intron 20.0%
!! GAAAGAAAACAAACTATTAA+AGG - chr7_4:23071773-23071792 None:intergenic 20.0%
!!! ATTATTTTGGTCATTTATGA+AGG + chr7_4:23071801-23071820 Msa1146010:intron 20.0%
!! TTTATGCTTTACAAACTAAT+GGG + chr7_4:23071998-23072017 Msa1146010:CDS 20.0%
!!! ATATTTTGTAACTTCAAATC+CGG - chr7_4:23072224-23072243 None:intergenic 20.0%
!!! ATAATTTAAAAGTGTCTCAA+AGG + chr7_4:23072250-23072269 Msa1146010:intron 20.0%
!! ATTTATTATTCCAAACACTT+TGG + chr7_4:23072312-23072331 Msa1146010:intron 20.0%
!!! TGTCAATTCAATATCATTTT+GGG - chr7_4:23072577-23072596 None:intergenic 20.0%
!!! ATGTCAATTCAATATCATTT+TGG - chr7_4:23072578-23072597 None:intergenic 20.0%
!!! ATTTTTAATCTTCTCTTTTC+AGG + chr7_4:23072900-23072919 Msa1146010:intron 20.0%
!!! TTTTTAATCTTCTCTTTTCA+GGG + chr7_4:23072901-23072920 Msa1146010:intron 20.0%
!!! AGTGTCTTTATTTGTAAAAT+AGG - chr7_4:23073049-23073068 None:intergenic 20.0%
!!! TTTTACAAATAAAGACACTA+AGG + chr7_4:23073050-23073069 Msa1146010:intron 20.0%
!! AAATCAAACTTTGTATAGAA+TGG - chr7_4:23073220-23073239 None:intergenic 20.0%
!!! TAATTTTCCTTGATTATGTT+TGG + chr7_4:23073717-23073736 Msa1146010:intron 20.0%
!!! TTTTTGAGAAAATTGTTCAT+AGG + chr7_4:23074624-23074643 Msa1146010:three_prime_UTR 20.0%
! AAGAAAAATGGAAAAGATGA+AGG - chr7_4:23068796-23068815 None:intergenic 25.0%
!!! TTTTGATTTGATTTGATGCT+AGG + chr7_4:23069149-23069168 Msa1146010:intron 25.0%
!!! TATTTTTGTGGAAAATTGAG+TGG + chr7_4:23069218-23069237 Msa1146010:intron 25.0%
!! ATTTTTGTGGAAAATTGAGT+GGG + chr7_4:23069219-23069238 Msa1146010:intron 25.0%
! ATACCAGAATGATTTGATTA+AGG + chr7_4:23069430-23069449 Msa1146010:intron 25.0%
!!! TTTGTTTGTTTTTATTTCCC+TGG + chr7_4:23069513-23069532 Msa1146010:intron 25.0%
!! AGATTCCATTATGCTAATTT+TGG + chr7_4:23069564-23069583 Msa1146010:intron 25.0%
! GATTGTTTGGATAAACTAAA+CGG - chr7_4:23069615-23069634 None:intergenic 25.0%
! AAAAATTCTTAAGGTCTGTT+TGG + chr7_4:23069779-23069798 Msa1146010:intron 25.0%
! CAAAAATAAGTCAATCCAAA+CGG + chr7_4:23070091-23070110 Msa1146010:intron 25.0%
! TCTTTGGATAAACAACTTAA+GGG - chr7_4:23070118-23070137 None:intergenic 25.0%
!!! TCTTGATTAGTCTTCATTAA+TGG + chr7_4:23070327-23070346 Msa1146010:intron 25.0%
!!! TCTTCATTAATGGTTTGTTT+TGG + chr7_4:23070337-23070356 Msa1146010:intron 25.0%
! AAAGTTCCAATTTCAATTGA+TGG + chr7_4:23070615-23070634 Msa1146010:CDS 25.0%
!!! TTTTCTTTTGATTCCAATGT+AGG - chr7_4:23070684-23070703 None:intergenic 25.0%
! AACTAGAATACCTTATTCTT+AGG - chr7_4:23070762-23070781 None:intergenic 25.0%
! CTTTAGCGTTATTTATAATC+AGG - chr7_4:23071012-23071031 None:intergenic 25.0%
! CTGATTATAAATAACGCTAA+AGG + chr7_4:23071010-23071029 Msa1146010:CDS 25.0%
!! AATTTTCAGTTTGTGGTTAT+AGG + chr7_4:23071118-23071137 Msa1146010:intron 25.0%
! AATGAAACCGATATTGATAT+TGG + chr7_4:23071278-23071297 Msa1146010:CDS 25.0%
! AGGTATTCCAATATCAATAT+CGG - chr7_4:23071288-23071307 None:intergenic 25.0%
! GTAATTAATTATGCTTTCCT+TGG + chr7_4:23071410-23071429 Msa1146010:intron 25.0%
!!! AATTTTTTTAAATCTCCCTG+TGG - chr7_4:23071436-23071455 None:intergenic 25.0%
!!! TTACATTTTGATACCTAATC+TGG + chr7_4:23071459-23071478 Msa1146010:intron 25.0%
!!! ATGTTGCAGAAGTATTTTTA+TGG + chr7_4:23071562-23071581 Msa1146010:CDS 25.0%
!!! AGAAGTATTTTTATGGCTTA+TGG + chr7_4:23071569-23071588 Msa1146010:CDS 25.0%
! CGAATAAATTTGACATGAAA+AGG - chr7_4:23071689-23071708 None:intergenic 25.0%
!!! CTTTCTGAGATGAATTATTT+TGG + chr7_4:23071788-23071807 Msa1146010:intron 25.0%
! TATAGATAATTTACCATTGC+AGG + chr7_4:23071868-23071887 Msa1146010:intron 25.0%
! GTTTATGCTTTACAAACTAA+TGG + chr7_4:23071997-23072016 Msa1146010:CDS 25.0%
!! AATTTGAAAACCAAAGTGTT+TGG - chr7_4:23072325-23072344 None:intergenic 25.0%
! AAAATGTTCATAGTTTCAGA+TGG + chr7_4:23072599-23072618 Msa1146010:intron 25.0%
! AAAACATGAACCAAAGAAAA+AGG - chr7_4:23072823-23072842 None:intergenic 25.0%
!!! CTTCATTTTTTTACTCTTTC+TGG + chr7_4:23072992-23073011 Msa1146010:intron 25.0%
!! AGGTATACATTCTTTTTACA+AGG + chr7_4:23073070-23073089 Msa1146010:intron 25.0%
!! ATACATTCTTTTTACAAGGT+TGG + chr7_4:23073074-23073093 Msa1146010:intron 25.0%
! TTTGTATAGAATGGTAGTAA+CGG - chr7_4:23073211-23073230 None:intergenic 25.0%
!!! AAAGTGTAGAGTTTTTTTAG+GGG - chr7_4:23073256-23073275 None:intergenic 25.0%
!!! GAAAGTGTAGAGTTTTTTTA+GGG - chr7_4:23073257-23073276 None:intergenic 25.0%
!!! TGAAAGTGTAGAGTTTTTTT+AGG - chr7_4:23073258-23073277 None:intergenic 25.0%
! GTTAAATTGAAAATCTCACA+TGG + chr7_4:23073431-23073450 Msa1146010:intron 25.0%
! ATCCTTGTAACAAAAAAGTT+TGG + chr7_4:23073513-23073532 Msa1146010:intron 25.0%
!!! TTCCAAACTTTTTTGTTACA+AGG - chr7_4:23073518-23073537 None:intergenic 25.0%
! ATATACTTTACAGGTATGAT+TGG + chr7_4:23073594-23073613 Msa1146010:intron 25.0%
!! ATGCTATAGTTTTCAATGAT+AGG + chr7_4:23073680-23073699 Msa1146010:intron 25.0%
!!! ATACATAGCTTTGAATTTGA+TGG + chr7_4:23073793-23073812 Msa1146010:three_prime_UTR 25.0%
! TTTACTAACCAAGTGTAAAT+GGG - chr7_4:23073853-23073872 None:intergenic 25.0%
!! TTTTACTAACCAAGTGTAAA+TGG - chr7_4:23073854-23073873 None:intergenic 25.0%
!!! TTTGATTTGTTATTGACTTC+AGG - chr7_4:23073940-23073959 None:intergenic 25.0%
! TATCGTTAAATAGATAACAC+TGG - chr7_4:23073994-23074013 None:intergenic 25.0%
! TAAGAAACATGATAAGACTT+GGG - chr7_4:23074139-23074158 None:intergenic 25.0%
! ATAAGAAACATGATAAGACT+TGG - chr7_4:23074140-23074159 None:intergenic 25.0%
! ACCTAATAATATGCTTCATA+TGG - chr7_4:23074203-23074222 None:intergenic 25.0%
!!! TATTGTAGGTTTTAGTTTAC+AGG + chr7_4:23074404-23074423 Msa1146010:three_prime_UTR 25.0%
AAAAATGGAAAAGATGAAGG+TGG - chr7_4:23068793-23068812 None:intergenic 30.0%
! TTTGAGGTGTGAAAAGAAAA+GGG - chr7_4:23068854-23068873 None:intergenic 30.0%
! ATTTGAGGTGTGAAAAGAAA+AGG - chr7_4:23068855-23068874 None:intergenic 30.0%
TGATTGTAGATGGAAATTTG+AGG - chr7_4:23068870-23068889 None:intergenic 30.0%
AAGAAGATAGGTGTAAAAGA+AGG - chr7_4:23068919-23068938 None:intergenic 30.0%
!!! TGCTTTGAAATTTTCTTGCT+TGG + chr7_4:23069079-23069098 Msa1146010:intron 30.0%
AAGCCTTAATCAAATCATTC+TGG - chr7_4:23069436-23069455 None:intergenic 30.0%
TTTACCTATTGCAAAAACCA+GGG - chr7_4:23069533-23069552 None:intergenic 30.0%
! TTTTACCTATTGCAAAAACC+AGG - chr7_4:23069534-23069553 None:intergenic 30.0%
TGACAACTTTCATGATTGTT+TGG - chr7_4:23069628-23069647 None:intergenic 30.0%
TAACTATTAGAAAGTGATGG+TGG + chr7_4:23069738-23069757 Msa1146010:intron 30.0%
AACTATTAGAAAGTGATGGT+GGG + chr7_4:23069739-23069758 Msa1146010:intron 30.0%
!! CTTATTTCTATAAGCTCTCT+AGG + chr7_4:23069849-23069868 Msa1146010:intron 30.0%
CTTGTTCTATAAGCGTTAAA+GGG + chr7_4:23069953-23069972 Msa1146010:intron 30.0%
! TGCAATTTTCGTAATCCAAA+CGG - chr7_4:23069980-23069999 None:intergenic 30.0%
GTCTTTGGATAAACAACTTA+AGG - chr7_4:23070119-23070138 None:intergenic 30.0%
GATTTCAGCAAACAACTATA+TGG + chr7_4:23070506-23070525 Msa1146010:intron 30.0%
TAACCTATCGAAAGAAAAAC+CGG - chr7_4:23070596-23070615 None:intergenic 30.0%
TTGTAGCAAACCTAAGAATA+AGG + chr7_4:23070749-23070768 Msa1146010:CDS 30.0%
! CTTGAAATTTTGTTAGCTCA+CGG + chr7_4:23070904-23070923 Msa1146010:intron 30.0%
! TTGAAATTTTGTTAGCTCAC+GGG + chr7_4:23070905-23070924 Msa1146010:intron 30.0%
AGCGTTATTTATAATCAGGA+TGG - chr7_4:23071008-23071027 None:intergenic 30.0%
TTGAAAAGTCCTGCAAAATA+AGG - chr7_4:23071245-23071264 None:intergenic 30.0%
!!! ATATTTTTTCAAGGCTTCAC+CGG - chr7_4:23071333-23071352 None:intergenic 30.0%
TATATACAAAACAAGTCCAC+AGG + chr7_4:23071350-23071369 Msa1146010:CDS 30.0%
ATTTGACATGAAAAGGAACT+AGG - chr7_4:23071682-23071701 None:intergenic 30.0%
CTTCTAAATATAGAGAATGC+TGG + chr7_4:23071905-23071924 Msa1146010:CDS 30.0%
!!! TTTTTTGGAAATAAGCACCA+CGG + chr7_4:23071937-23071956 Msa1146010:CDS 30.0%
TTTACAAACTAATGGGAAGA+TGG + chr7_4:23072005-23072024 Msa1146010:CDS 30.0%
!! AGGTGAGTTATTATTTTTCC+AGG + chr7_4:23072071-23072090 Msa1146010:intron 30.0%
!! AGTTATTATTTTTCCAGGCT+TGG + chr7_4:23072076-23072095 Msa1146010:intron 30.0%
TTTATTCTTTGCATGCTTTC+AGG + chr7_4:23072415-23072434 Msa1146010:intron 30.0%
TTATTCTTTGCATGCTTTCA+GGG + chr7_4:23072416-23072435 Msa1146010:intron 30.0%
CTATACAATGTCAACTTTAC+AGG + chr7_4:23072481-23072500 Msa1146010:intron 30.0%
AGTTTGACCAAAGAAACAAT+GGG - chr7_4:23072800-23072819 None:intergenic 30.0%
!! CTTTGGTTCATGTTTTATAC+TGG + chr7_4:23072827-23072846 Msa1146010:intron 30.0%
TTTGAATAATCATCACCTTG+AGG - chr7_4:23072972-23072991 None:intergenic 30.0%
!!! TTTTTTACTCTTTCTGGCTA+TGG + chr7_4:23072998-23073017 Msa1146010:intron 30.0%
TTGTATAGAATGGTAGTAAC+GGG - chr7_4:23073210-23073229 None:intergenic 30.0%
! CTTTAGTAGCATTTTCGTTA+AGG + chr7_4:23073409-23073428 Msa1146010:exon 30.0%
TAGTTAACATTAGTAGTCCA+AGG - chr7_4:23073467-23073486 None:intergenic 30.0%
! GTAACAAAAAAGTTTGGAAC+AGG + chr7_4:23073519-23073538 Msa1146010:intron 30.0%
ACTCTGTTGATATACTTTAC+AGG + chr7_4:23073585-23073604 Msa1146010:intron 30.0%
CTGTAATCCAAACATAATCA+AGG - chr7_4:23073727-23073746 None:intergenic 30.0%
!! ATAGCTTTGAATTTGATGGA+TGG + chr7_4:23073797-23073816 Msa1146010:three_prime_UTR 30.0%
!! TAGCTTTGAATTTGATGGAT+GGG + chr7_4:23073798-23073817 Msa1146010:three_prime_UTR 30.0%
TATATAGTCCCATTTACACT+TGG + chr7_4:23073842-23073861 Msa1146010:three_prime_UTR 30.0%
GCCATATGAAGCATATTATT+AGG + chr7_4:23074199-23074218 Msa1146010:intron 30.0%
AAACATTCTTGTGTATATGC+AGG + chr7_4:23074251-23074270 Msa1146010:intron 30.0%
! AACTTGAGATTTTATGGACA+AGG + chr7_4:23074306-23074325 Msa1146010:three_prime_UTR 30.0%
! ACTTGAGATTTTATGGACAA+GGG + chr7_4:23074307-23074326 Msa1146010:three_prime_UTR 30.0%
GGAGACTTATAACAAATCAT+AGG + chr7_4:23074425-23074444 Msa1146010:three_prime_UTR 30.0%
TTGAGGTGTGAAAAGAAAAG+GGG - chr7_4:23068853-23068872 None:intergenic 35.0%
GTGAGAATCTTGATTGTAGA+TGG - chr7_4:23068880-23068899 None:intergenic 35.0%
AACACAGAGAAGAAGAAGAT+AGG - chr7_4:23068931-23068950 None:intergenic 35.0%
! CTTCTTACTTTCTCTTTTGC+TGG + chr7_4:23068958-23068977 Msa1146010:CDS 35.0%
ATGTGACAACAACTTTGTTC+TGG + chr7_4:23069023-23069042 Msa1146010:CDS 35.0%
GCTTGAAATGCTGTTCTTAT+TGG + chr7_4:23069107-23069126 Msa1146010:intron 35.0%
!!! GAAGCTTGTTTTTTGAGCAT+TGG + chr7_4:23069307-23069326 Msa1146010:intron 35.0%
!!! TTTTTTGAGCATTGGATGCT+TGG + chr7_4:23069315-23069334 Msa1146010:intron 35.0%
!! ATTTCCCTGGTTTTTGCAAT+AGG + chr7_4:23069526-23069545 Msa1146010:intron 35.0%
GACTTGATTCTATCTTGTCA+TGG + chr7_4:23069895-23069914 Msa1146010:intron 35.0%
GCTTGTTCTATAAGCGTTAA+AGG + chr7_4:23069952-23069971 Msa1146010:intron 35.0%
! GCAATTTTCGTAATCCAAAC+GGG - chr7_4:23069979-23069998 None:intergenic 35.0%
AAGTCAGTTACTCTAGGTTA+AGG - chr7_4:23070144-23070163 None:intergenic 35.0%
ACAGTTAAGTCAGTTACTCT+AGG - chr7_4:23070150-23070169 None:intergenic 35.0%
TCTCTTGCAGCAATGTAAAA+AGG + chr7_4:23070204-23070223 Msa1146010:intron 35.0%
AAGACTAATCAAGAAGACAG+AGG - chr7_4:23070321-23070340 None:intergenic 35.0%
! AGTTTGAAATGGTGAGAACA+AGG + chr7_4:23070401-23070420 Msa1146010:intron 35.0%
AATCTCTTAGCTTATGTCTC+AGG + chr7_4:23070484-23070503 Msa1146010:intron 35.0%
!!! CGTGGAAGTATGAGTTTTTT+CGG + chr7_4:23070561-23070580 Msa1146010:intron 35.0%
!! TCCAATTTCAATTGATGGTG+TGG + chr7_4:23070620-23070639 Msa1146010:CDS 35.0%
TCCACACCATCAATTGAAAT+TGG - chr7_4:23070624-23070643 None:intergenic 35.0%
CGTGAGCTAACAAAATTTCA+AGG - chr7_4:23070906-23070925 None:intergenic 35.0%
TTGTGAAACTACATTGTCCT+CGG - chr7_4:23070949-23070968 None:intergenic 35.0%
ACAATGTAGTTTCACAACCA+AGG + chr7_4:23070952-23070971 Msa1146010:CDS 35.0%
TTCTTCAGCTATATTTGCCT+TGG - chr7_4:23070972-23070991 None:intergenic 35.0%
CAGTTTGTGGTTATAGGTTT+CGG + chr7_4:23071124-23071143 Msa1146010:intron 35.0%
!! TTTTGCAGGACTTTTCAAGA+TGG + chr7_4:23071247-23071266 Msa1146010:intron 35.0%
ATGTTTCACTTCTTGTGTGA+AGG + chr7_4:23071374-23071393 Msa1146010:intron 35.0%
! TTTTTATGGCTTATGGCTGT+TGG + chr7_4:23071576-23071595 Msa1146010:CDS 35.0%
TGAGCAAGAGAAGCTATTAA+AGG + chr7_4:23071653-23071672 Msa1146010:CDS 35.0%
TTAAAGGAATCTTCTGTGAG+AGG - chr7_4:23071757-23071776 None:intergenic 35.0%
! GCTTATTTCCAAAAAAGCAC+TGG - chr7_4:23071933-23071952 None:intergenic 35.0%
AAGATGGTTCATTGATGTTC+TGG + chr7_4:23072021-23072040 Msa1146010:CDS 35.0%
TCTTGACATTATGTTAGAGC+AGG + chr7_4:23072143-23072162 Msa1146010:intron 35.0%
! AACGCTAGGATACCAAATTT+TGG - chr7_4:23072174-23072193 None:intergenic 35.0%
!! TATGTGAAAGTACCCTTCTT+CGG + chr7_4:23072643-23072662 Msa1146010:CDS 35.0%
AAGAATATCTTGACCAATCC+AGG - chr7_4:23072755-23072774 None:intergenic 35.0%
! TTGCTTTCCCATTGTTTCTT+TGG + chr7_4:23072790-23072809 Msa1146010:intron 35.0%
GAGTTTGACCAAAGAAACAA+TGG - chr7_4:23072801-23072820 None:intergenic 35.0%
! TGGTCAAACTCCTTTTTCTT+TGG + chr7_4:23072810-23072829 Msa1146010:intron 35.0%
! GGGTATCGCTTTGATAATTA+CGG + chr7_4:23072921-23072940 Msa1146010:intron 35.0%
ATAATCATCACCTTGAGGTT+TGG - chr7_4:23072967-23072986 None:intergenic 35.0%
CTTCCTATATGACATCTTCT+GGG + chr7_4:23073118-23073137 Msa1146010:CDS 35.0%
CTACACTTTCACTTCTTTAC+AGG + chr7_4:23073267-23073286 Msa1146010:intron 35.0%
CTATAGCATACCTAAACCAT+AGG - chr7_4:23073669-23073688 None:intergenic 35.0%
ACCTGTAGATCAAAATCCAA+GGG - chr7_4:23073762-23073781 None:intergenic 35.0%
TCAAAGCTATGTATGTGACA+AGG - chr7_4:23073787-23073806 None:intergenic 35.0%
AATAGATAACACTGGTGTAG+TGG - chr7_4:23073986-23074005 None:intergenic 35.0%
!!! GTTTAGTGGTTTTAGTGTAG+CGG - chr7_4:23074065-23074084 None:intergenic 35.0%
TATGCTTCATATGGCATAGT+GGG - chr7_4:23074194-23074213 None:intergenic 35.0%
ATATGCTTCATATGGCATAG+TGG - chr7_4:23074195-23074214 None:intergenic 35.0%
CTTCTTTCCCAATGACAAAA+AGG - chr7_4:23074279-23074298 None:intergenic 35.0%
! CTTGAGATTTTATGGACAAG+GGG + chr7_4:23074308-23074327 Msa1146010:three_prime_UTR 35.0%
! TTGAGATTTTATGGACAAGG+GGG + chr7_4:23074309-23074328 Msa1146010:three_prime_UTR 35.0%
AAACCTACAATACTATTCCG+CGG - chr7_4:23074396-23074415 None:intergenic 35.0%
CCAAAGTACAAACAGATTCA+TGG - chr7_4:23074587-23074606 None:intergenic 35.0%
CCATGAATCTGTTTGTACTT+TGG + chr7_4:23074584-23074603 Msa1146010:three_prime_UTR 35.0%
AGATGAAGGTGGTAGTACAA+AGG - chr7_4:23068782-23068801 None:intergenic 40.0%
CTTCTTCTTCTCTGTGTTCA+TGG + chr7_4:23068933-23068952 Msa1146010:CDS 40.0%
AGTATTGCTCCTAAGAAACC+TGG + chr7_4:23069000-23069019 Msa1146010:CDS 40.0%
TTGTCACATCCAGGTTTCTT+AGG - chr7_4:23069012-23069031 None:intergenic 40.0%
ACAAAGTTGTTGTCACATCC+AGG - chr7_4:23069021-23069040 None:intergenic 40.0%
!! TCTCAACTGTAGCTGTTTTC+TGG + chr7_4:23069662-23069681 Msa1146010:intron 40.0%
!! GGTCTGTTTGGATTAGCTTA+TGG + chr7_4:23069791-23069810 Msa1146010:intron 40.0%
AAACAACTTAAGGGTCCGTT+TGG - chr7_4:23070109-23070128 None:intergenic 40.0%
CTCTAGGTTAAGGTTGTCTT+TGG - chr7_4:23070134-23070153 None:intergenic 40.0%
AAATGGTGAGAACAAGGTGA+TGG + chr7_4:23070407-23070426 Msa1146010:intron 40.0%
!! CTATGAGTATTGATAGGTCG+TGG + chr7_4:23070543-23070562 Msa1146010:intron 40.0%
!!! GTTTTTTCGGCAGATTTGAC+CGG + chr7_4:23070574-23070593 Msa1146010:intron 40.0%
!! TGACCGGTTTTTCTTTCGAT+AGG + chr7_4:23070590-23070609 Msa1146010:intron 40.0%
!! TCAATTGATGGTGTGGAAAG+CGG + chr7_4:23070627-23070646 Msa1146010:CDS 40.0%
TGCAAGATTTGGACCTACAT+TGG + chr7_4:23070668-23070687 Msa1146010:CDS 40.0%
!! TTAGGTTTGCTACAACAGTC+AGG - chr7_4:23070744-23070763 None:intergenic 40.0%
GCAAATATAGCTGAAGAAGC+TGG + chr7_4:23070974-23070993 Msa1146010:CDS 40.0%
CAAGAAGTGAAACATACCTG+TGG - chr7_4:23071369-23071388 None:intergenic 40.0%
GCAAGACACAAAACCAGATT+AGG - chr7_4:23071475-23071494 None:intergenic 40.0%
TCATCTGAATCATCCTGCAA+TGG - chr7_4:23071884-23071903 None:intergenic 40.0%
ATGGTTCATTGATGTTCTGG+TGG + chr7_4:23072024-23072043 Msa1146010:CDS 40.0%
!! CTGGTGGTTCTGTTTTGTAT+TGG + chr7_4:23072040-23072059 Msa1146010:CDS 40.0%
!! GTGGTTCTGTTTTGTATTGG+TGG + chr7_4:23072043-23072062 Msa1146010:CDS 40.0%
!!! GTTTTGTATTGGTGGTGTTG+AGG + chr7_4:23072051-23072070 Msa1146010:CDS 40.0%
TAATCATCAAGAACCAAGCC+TGG - chr7_4:23072092-23072111 None:intergenic 40.0%
AACTTCAAATCCGGACAGAA+AGG - chr7_4:23072215-23072234 None:intergenic 40.0%
!! GACTTTAGAGCCATTTGCTA+TGG - chr7_4:23072360-23072379 None:intergenic 40.0%
!! AGCAAATGGCTCTAAAGTCA+TGG + chr7_4:23072361-23072380 Msa1146010:intron 40.0%
!! GCAAATGGCTCTAAAGTCAT+GGG + chr7_4:23072362-23072381 Msa1146010:intron 40.0%
TGTCCAAATACCAAACCTCA+AGG + chr7_4:23072954-23072973 Msa1146010:CDS 40.0%
! TCACCTTGAGGTTTGGTATT+TGG - chr7_4:23072960-23072979 None:intergenic 40.0%
!! ACTCTTTCTGGCTATGGATA+TGG + chr7_4:23073004-23073023 Msa1146010:intron 40.0%
CCAGAAGATGTCATATAGGA+AGG - chr7_4:23073120-23073139 None:intergenic 40.0%
CCTTCCTATATGACATCTTC+TGG + chr7_4:23073117-23073136 Msa1146010:CDS 40.0%
ACACCCAGAAGATGTCATAT+AGG - chr7_4:23073124-23073143 None:intergenic 40.0%
! TTCGGGGACATAATTTTACC+AGG + chr7_4:23073385-23073404 Msa1146010:CDS 40.0%
! TCGGGGACATAATTTTACCA+GGG + chr7_4:23073386-23073405 Msa1146010:CDS 40.0%
CACATGGATCACTTATTCCT+TGG + chr7_4:23073447-23073466 Msa1146010:intron 40.0%
ACAGTTTAAATCCTGTCCCT+TGG + chr7_4:23073743-23073762 Msa1146010:intron 40.0%
TAGATCAAAATCCAAGGGAC+AGG - chr7_4:23073757-23073776 None:intergenic 40.0%
!! TCCCTTGGATTTTGATCTAC+AGG + chr7_4:23073758-23073777 Msa1146010:intron 40.0%
GACCTGTAGATCAAAATCCA+AGG - chr7_4:23073763-23073782 None:intergenic 40.0%
! TTGAATTTGATGGATGGGCA+TGG + chr7_4:23073803-23073822 Msa1146010:three_prime_UTR 40.0%
! CTTTTTGCGTAGTCAAACAG+CGG - chr7_4:23074099-23074118 None:intergenic 40.0%
GACTTGGGATAAGTTTCACA+AGG - chr7_4:23074124-23074143 None:intergenic 40.0%
! TGCAGGAACCTTTTTGTCAT+TGG + chr7_4:23074268-23074287 Msa1146010:intron 40.0%
! GCAGGAACCTTTTTGTCATT+GGG + chr7_4:23074269-23074288 Msa1146010:intron 40.0%
TTGTCATTGGGAAAGAAGAG+AGG + chr7_4:23074281-23074300 Msa1146010:three_prime_UTR 40.0%
! GAGGCGAACTTGAGATTTTA+TGG + chr7_4:23074300-23074319 Msa1146010:three_prime_UTR 40.0%
GATGATCCTCTTTGATGTGA+GGG - chr7_4:23074352-23074371 None:intergenic 40.0%
TGATGATCCTCTTTGATGTG+AGG - chr7_4:23074353-23074372 None:intergenic 40.0%
AACCTACAATACTATTCCGC+GGG - chr7_4:23074395-23074414 None:intergenic 40.0%
CAGCCTAACGATATTGTACA+AGG + chr7_4:23074498-23074517 Msa1146010:three_prime_UTR 40.0%
GTGCCTTGTACAATATCGTT+AGG - chr7_4:23074504-23074523 None:intergenic 40.0%
CCAACATCTAACAGTCAAGA+GGG - chr7_4:23074559-23074578 None:intergenic 40.0%
TCCAACATCTAACAGTCAAG+AGG - chr7_4:23074560-23074579 None:intergenic 40.0%
TCTTGACTGTTAGATGTTGG+AGG + chr7_4:23074559-23074578 Msa1146010:three_prime_UTR 40.0%
AGGAAGAGGAAATCGTGAAG+GGG - chr7_4:23068759-23068778 None:intergenic 45.0%
GAGGAAGAGGAAATCGTGAA+GGG - chr7_4:23068760-23068779 None:intergenic 45.0%
TGGTAGTACAAAGGAGGAAG+AGG - chr7_4:23068773-23068792 None:intergenic 45.0%
TGAAGGTGGTAGTACAAAGG+AGG - chr7_4:23068779-23068798 None:intergenic 45.0%
GGTGTGAAAAGAAAAGGGGT+TGG - chr7_4:23068849-23068868 None:intergenic 45.0%
GTGCAGACACAGAATACACT+AGG + chr7_4:23070257-23070276 Msa1146010:intron 45.0%
! GTTTGCTACAACAGTCAGGA+GGG - chr7_4:23070740-23070759 None:intergenic 45.0%
ATTATGCTTTCCTTGGCCAC+AGG + chr7_4:23071417-23071436 Msa1146010:intron 45.0%
TTATGCTTTCCTTGGCCACA+GGG + chr7_4:23071418-23071437 Msa1146010:intron 45.0%
TTTAAATCTCCCTGTGGCCA+AGG - chr7_4:23071430-23071449 None:intergenic 45.0%
! CCAGTAAGAAGCACAGAGAA+TGG - chr7_4:23071604-23071623 None:intergenic 45.0%
CCATTCTCTGTGCTTCTTAC+TGG + chr7_4:23071601-23071620 Msa1146010:CDS 45.0%
TTGCTCAATAACACCCTCTC+TGG - chr7_4:23071640-23071659 None:intergenic 45.0%
!!! TGCTGGTTCCAGTGCTTTTT+TGG + chr7_4:23071922-23071941 Msa1146010:CDS 45.0%
GAGCAGGCTACACCAAAATT+TGG + chr7_4:23072159-23072178 Msa1146010:intron 45.0%
TTGGTATCCTAGCGTTCAGA+CGG + chr7_4:23072178-23072197 Msa1146010:intron 45.0%
CACATTAGTGCCTTTCTGTC+CGG + chr7_4:23072202-23072221 Msa1146010:intron 45.0%
GTCCTGTCATCCATAGCAAA+TGG + chr7_4:23072347-23072366 Msa1146010:intron 45.0%
!! AGCCATTTGCTATGGATGAC+AGG - chr7_4:23072352-23072371 None:intergenic 45.0%
! TGTGAAACAGCACCGAAGAA+GGG - chr7_4:23072658-23072677 None:intergenic 45.0%
! ATGTGAAACAGCACCGAAGA+AGG - chr7_4:23072659-23072678 None:intergenic 45.0%
ACAGCGAATGCTATGCAGAA+GGG - chr7_4:23072700-23072719 None:intergenic 45.0%
CATAGCATTCGCTGTGGTTT+GGG + chr7_4:23072705-23072724 Msa1146010:CDS 45.0%
ATAGCATTCGCTGTGGTTTG+GGG + chr7_4:23072706-23072725 Msa1146010:CDS 45.0%
CAATCCAGGCATACGATACA+CGG - chr7_4:23072741-23072760 None:intergenic 45.0%
CCACTATCATCACACTCTCA+TGG - chr7_4:23073166-23073185 None:intergenic 45.0%
! CCATGAGAGTGTGATGATAG+TGG + chr7_4:23073163-23073182 Msa1146010:CDS 45.0%
ACTTCTTTACAGGTAGCTCG+CGG + chr7_4:23073277-23073296 Msa1146010:intron 45.0%
GGTGATAAGAGTGGAGAAGA+TGG + chr7_4:23073298-23073317 Msa1146010:CDS 45.0%
TACCGCGTTTATTCGATCCT+TGG + chr7_4:23073341-23073360 Msa1146010:CDS 45.0%
ACCGCGTTTATTCGATCCTT+GGG + chr7_4:23073342-23073361 Msa1146010:CDS 45.0%
!! GGTTACAGTGTCATCGGTTT+CGG + chr7_4:23073367-23073386 Msa1146010:CDS 45.0%
!! GTTACAGTGTCATCGGTTTC+GGG + chr7_4:23073368-23073387 Msa1146010:CDS 45.0%
!! TTACAGTGTCATCGGTTTCG+GGG + chr7_4:23073369-23073388 Msa1146010:CDS 45.0%
CGAAAATGCTACTAAAGCCC+TGG - chr7_4:23073406-23073425 None:intergenic 45.0%
! GGTATGATTGGTTAGCGAAG+AGG + chr7_4:23073606-23073625 Msa1146010:intron 45.0%
!! ACAAGAAGTATCCTGCTCGA+AGG - chr7_4:23073634-23073653 None:intergenic 45.0%
TTCGAGCAGGATACTTCTTG+TGG + chr7_4:23073633-23073652 Msa1146010:three_prime_UTR 45.0%
ACGATGAGTGCCTATGGTTT+AGG + chr7_4:23073656-23073675 Msa1146010:three_prime_UTR 45.0%
GGGACTATATACAGCAAAGC+TGG - chr7_4:23073833-23073852 None:intergenic 45.0%
!! ATGTGAGGGCAAGGCATTTT+TGG - chr7_4:23074338-23074357 None:intergenic 45.0%
CCCTCTTGACTGTTAGATGT+TGG + chr7_4:23074556-23074575 Msa1146010:three_prime_UTR 45.0%
!!! AATTTATTTTTATATTTTTG+TGG + chr7_4:23069206-23069225 Msa1146010:intron 5.0%
!!! TTTATTAATATTTTGTAATA+TGG + chr7_4:23070876-23070895 Msa1146010:intron 5.0%
GGAGGAAGAGGAAATCGTGA+AGG - chr7_4:23068761-23068780 None:intergenic 50.0%
TAAGCGTTAAAGGGCCCGTT+TGG + chr7_4:23069962-23069981 Msa1146010:intron 50.0%
!! GTCGGTGTTGGTGCAAGATT+TGG + chr7_4:23070657-23070676 Msa1146010:CDS 50.0%
CGGCAATGGCAACTCTAGTA+TGG - chr7_4:23070716-23070735 None:intergenic 50.0%
!! GGTTTGCTACAACAGTCAGG+AGG - chr7_4:23070741-23070760 None:intergenic 50.0%
!! GAGATCATTTTGGTGCACCG+AGG + chr7_4:23070929-23070948 Msa1146010:CDS 50.0%
ACTTCTGCAACATCGACCTG+TGG - chr7_4:23071555-23071574 None:intergenic 50.0%
TCTTCTGTGAGAGGACTGTG+AGG - chr7_4:23071748-23071767 None:intergenic 50.0%
!! AACGAATGAAAGTGCTGCCG+TGG - chr7_4:23071957-23071976 None:intergenic 50.0%
AATGTGTCCGTCTGAACGCT+AGG - chr7_4:23072188-23072207 None:intergenic 50.0%
! GGGACTGCAAACTTGCTTAG+TGG + chr7_4:23072436-23072455 Msa1146010:intron 50.0%
AGCGAATGCTATGCAGAAGG+GGG - chr7_4:23072698-23072717 None:intergenic 50.0%
CAGCGAATGCTATGCAGAAG+GGG - chr7_4:23072699-23072718 None:intergenic 50.0%
CACAGCGAATGCTATGCAGA+AGG - chr7_4:23072701-23072720 None:intergenic 50.0%
CTTCTGCATAGCATTCGCTG+TGG + chr7_4:23072699-23072718 Msa1146010:CDS 50.0%
GCATAGCATTCGCTGTGGTT+TGG + chr7_4:23072704-23072723 Msa1146010:CDS 50.0%
CGTGTATCGTATGCCTGGAT+TGG + chr7_4:23072739-23072758 Msa1146010:CDS 50.0%
CCCCAAGGATCGAATAAACG+CGG - chr7_4:23073346-23073365 None:intergenic 50.0%
CCGCGTTTATTCGATCCTTG+GGG + chr7_4:23073343-23073362 Msa1146010:CDS 50.0%
CGTTTATTCGATCCTTGGGG+TGG + chr7_4:23073346-23073365 Msa1146010:CDS 50.0%
ATGACACTGTAACCACCCCA+AGG - chr7_4:23073361-23073380 None:intergenic 50.0%
TGGGGTGGTTACAGTGTCAT+CGG + chr7_4:23073361-23073380 Msa1146010:CDS 50.0%
TTGTGGACGATGAGTGCCTA+TGG + chr7_4:23073650-23073669 Msa1146010:three_prime_UTR 50.0%
CGGCTATCACAGTGGTTTAG+TGG - chr7_4:23074079-23074098 None:intergenic 50.0%
TCAAACAGCGGCTATCACAG+TGG - chr7_4:23074087-23074106 None:intergenic 50.0%
TCCTCTTTGATGTGAGGGCA+AGG - chr7_4:23074347-23074366 None:intergenic 50.0%
AGTAGACGAGTAATCTCCCG+CGG + chr7_4:23074376-23074395 Msa1146010:three_prime_UTR 50.0%
CTCCCGCGGAATAGTATTGT+AGG + chr7_4:23074390-23074409 Msa1146010:three_prime_UTR 50.0%
GTGGAAAGCGGCGAGTATGT+CGG + chr7_4:23070639-23070658 Msa1146010:CDS 55.0%
GCTACAACAGTCAGGAGGGT+CGG - chr7_4:23070736-23070755 None:intergenic 55.0%
! GCTCACGGGCGAGATCATTT+TGG + chr7_4:23070919-23070938 Msa1146010:intron 55.0%
ACCTGCTGTCATGCTTCCAC+TGG + chr7_4:23071304-23071323 Msa1146010:CDS 55.0%
! TCCAGTGGAAGCATGACAGC+AGG - chr7_4:23071308-23071327 None:intergenic 55.0%
GTCATGCTTCCACTGGATGC+CGG + chr7_4:23071311-23071330 Msa1146010:CDS 55.0%
ATACTCTCCACGACGTCCAC+AGG + chr7_4:23071536-23071555 Msa1146010:CDS 55.0%
! GTGCTTCTTACTGGTCTGCC+TGG + chr7_4:23071610-23071629 Msa1146010:CDS 55.0%
AACGCCGTGTATCGTATGCC+TGG + chr7_4:23072734-23072753 Msa1146010:CDS 55.0%
GTAGCTCGCGGTGATAAGAG+TGG + chr7_4:23073289-23073308 Msa1146010:CDS 55.0%
GCGGTATCTTGAGCAGCATG+GGG - chr7_4:23073327-23073346 None:intergenic 55.0%
CGCGGTATCTTGAGCAGCAT+GGG - chr7_4:23073328-23073347 None:intergenic 55.0%
ACGCGGTATCTTGAGCAGCA+TGG - chr7_4:23073329-23073348 None:intergenic 55.0%
GCCTTGCCCTCACATCAAAG+AGG + chr7_4:23074343-23074362 Msa1146010:three_prime_UTR 55.0%
GCGGGAGATTACTCGTCTAC+TGG - chr7_4:23074377-23074396 None:intergenic 55.0%
AGCGGCGAGTATGTCGGTGT+TGG + chr7_4:23070645-23070664 Msa1146010:CDS 60.0%
ACAGTCAGGAGGGTCGGCAA+TGG - chr7_4:23070730-23070749 None:intergenic 60.0%
AAGGCTTCACCGGCATCCAG+TGG - chr7_4:23071323-23071342 None:intergenic 60.0%
ACATCGACCTGTGGACGTCG+TGG - chr7_4:23071546-23071565 None:intergenic 60.0%
TCTGCCTGGACTGCCAGAGA+GGG + chr7_4:23071624-23071643 Msa1146010:CDS 60.0%
AACACCCTCTCTGGCAGTCC+AGG - chr7_4:23071631-23071650 None:intergenic 60.0%
GCGAAGAGGAACCTTCGAGC+AGG + chr7_4:23073620-23073639 Msa1146010:three_prime_UTR 60.0%
GTCTGCCTGGACTGCCAGAG+AGG + chr7_4:23071623-23071642 Msa1146010:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 23068713 23074676 23068713 ID=Msa1146010;Name=Msa1146010
chr7_4 mRNA 23068713 23074676 23068713 ID=Msa1146010-mRNA-1;Parent=Msa1146010;Name=Msa1146010-mRNA-1;_AED=0.13;_eAED=0.13;_QI=200|1|1|1|0.92|0.92|14|575|441
chr7_4 exon 23068713 23069044 23068713 ID=Msa1146010-mRNA-1:exon:5792;Parent=Msa1146010-mRNA-1
chr7_4 exon 23070612 23070770 23070612 ID=Msa1146010-mRNA-1:exon:5793;Parent=Msa1146010-mRNA-1
chr7_4 exon 23070920 23071031 23070920 ID=Msa1146010-mRNA-1:exon:5794;Parent=Msa1146010-mRNA-1
chr7_4 exon 23071255 23071371 23071255 ID=Msa1146010-mRNA-1:exon:5795;Parent=Msa1146010-mRNA-1
chr7_4 exon 23071523 23071674 23071523 ID=Msa1146010-mRNA-1:exon:5796;Parent=Msa1146010-mRNA-1
chr7_4 exon 23071890 23072072 23071890 ID=Msa1146010-mRNA-1:exon:5797;Parent=Msa1146010-mRNA-1
chr7_4 exon 23072437 23072471 23072437 ID=Msa1146010-mRNA-1:exon:5798;Parent=Msa1146010-mRNA-1
chr7_4 exon 23072612 23072774 23072612 ID=Msa1146010-mRNA-1:exon:5799;Parent=Msa1146010-mRNA-1
chr7_4 exon 23072922 23072975 23072922 ID=Msa1146010-mRNA-1:exon:5800;Parent=Msa1146010-mRNA-1
chr7_4 exon 23073092 23073184 23073092 ID=Msa1146010-mRNA-1:exon:5801;Parent=Msa1146010-mRNA-1
chr7_4 exon 23073289 23073430 23073289 ID=Msa1146010-mRNA-1:exon:5802;Parent=Msa1146010-mRNA-1
chr7_4 exon 23073607 23073677 23073607 ID=Msa1146010-mRNA-1:exon:5803;Parent=Msa1146010-mRNA-1
chr7_4 exon 23073780 23073863 23073780 ID=Msa1146010-mRNA-1:exon:5804;Parent=Msa1146010-mRNA-1
chr7_4 exon 23074273 23074676 23074273 ID=Msa1146010-mRNA-1:exon:5805;Parent=Msa1146010-mRNA-1
chr7_4 five_prime_UTR 23068713 23068912 23068713 ID=Msa1146010-mRNA-1:five_prime_utr;Parent=Msa1146010-mRNA-1
chr7_4 CDS 23068913 23069044 23068913 ID=Msa1146010-mRNA-1:cds;Parent=Msa1146010-mRNA-1
chr7_4 CDS 23070612 23070770 23070612 ID=Msa1146010-mRNA-1:cds;Parent=Msa1146010-mRNA-1
chr7_4 CDS 23070920 23071031 23070920 ID=Msa1146010-mRNA-1:cds;Parent=Msa1146010-mRNA-1
chr7_4 CDS 23071255 23071371 23071255 ID=Msa1146010-mRNA-1:cds;Parent=Msa1146010-mRNA-1
chr7_4 CDS 23071523 23071674 23071523 ID=Msa1146010-mRNA-1:cds;Parent=Msa1146010-mRNA-1
chr7_4 CDS 23071890 23072072 23071890 ID=Msa1146010-mRNA-1:cds;Parent=Msa1146010-mRNA-1
chr7_4 CDS 23072437 23072471 23072437 ID=Msa1146010-mRNA-1:cds;Parent=Msa1146010-mRNA-1
chr7_4 CDS 23072612 23072774 23072612 ID=Msa1146010-mRNA-1:cds;Parent=Msa1146010-mRNA-1
chr7_4 CDS 23072922 23072975 23072922 ID=Msa1146010-mRNA-1:cds;Parent=Msa1146010-mRNA-1
chr7_4 CDS 23073092 23073184 23073092 ID=Msa1146010-mRNA-1:cds;Parent=Msa1146010-mRNA-1
chr7_4 CDS 23073289 23073414 23073289 ID=Msa1146010-mRNA-1:cds;Parent=Msa1146010-mRNA-1
chr7_4 three_prime_UTR 23073415 23073430 23073415 ID=Msa1146010-mRNA-1:three_prime_utr;Parent=Msa1146010-mRNA-1
chr7_4 three_prime_UTR 23073607 23073677 23073607 ID=Msa1146010-mRNA-1:three_prime_utr;Parent=Msa1146010-mRNA-1
chr7_4 three_prime_UTR 23073780 23073863 23073780 ID=Msa1146010-mRNA-1:three_prime_utr;Parent=Msa1146010-mRNA-1
chr7_4 three_prime_UTR 23074273 23074676 23074273 ID=Msa1146010-mRNA-1:three_prime_utr;Parent=Msa1146010-mRNA-1
Gene Sequence

>Msa1146010

ATGCCTTCTTTTACACCTATCTTCTTCTTCTCTGTGTTCATGGTTCTTCTTACTTTCTCTTTTGCTGGTGATATAGTTCATCATGATAGTATTGCTCCTAAGAAACCTGGATGTGACAACAACTTTGTTCTGGTTAAAGTTCCAATTTCAATTGATGGTGTGGAAAGCGGCGAGTATGTCGGTGTTGGTGCAAGATTTGGACCTACATTGGAATCAAAAGAAAAACGTGCTAACCATACTAGAGTTGCCATTGCCGACCCTCCTGACTGTTGTAGCAAACCTAAGAATAAGCTCACGGGCGAGATCATTTTGGTGCACCGAGGACAATGTAGTTTCACAACCAAGGCAAATATAGCTGAAGAAGCTGGTGCTTCAGCCATCCTGATTATAAATAACGCTAAAGGACTTTTCAAGATGGTTTGTGAAAATGAAACCGATATTGATATTGGAATACCTGCTGTCATGCTTCCACTGGATGCCGGTGAAGCCTTGAAAAAATATATACAAAACAAGTCCACAGTGTCTGTGCAGTTATACTCTCCACGACGTCCACAGGTCGATGTTGCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATTCTCTGTGCTTCTTACTGGTCTGCCTGGACTGCCAGAGAGGGTGTTATTGAGCAAGAGAAGCTATTAAAGGATGATTCAGATGAGCTTCTAAATATAGAGAATGCTGGTTCCAGTGCTTTTTTGGAAATAAGCACCACGGCAGCACTTTCATTCGTTGTGATTGCTTCTTGTTTCTTGTTTATGCTTTACAAACTAATGGGAAGATGGTTCATTGATGTTCTGGTGGTTCTGTTTTGTATTGGTGGTGTTGAGGGACTGCAAACTTGCTTAGTGGCTCTTTTATCACATTTCAGATGGTCTCAACATGCTGCACAAACATATGTGAAAGTACCCTTCTTCGGTGCTGTTTCACATCTCACTCTTGCTGTCACCCCCTTCTGCATAGCATTCGCTGTGGTTTGGGGAGTTGAACGCCGTGTATCGTATGCCTGGATTGGTCAAGATATTCTTGGTATCGCTTTGATAATTACGGTTCTTCAGATTGTCCAAATACCAAACCTCAAGGTTGGAACTGTTCTTCTCAGCTGCGCCTTCCTATATGACATCTTCTGGGTGTTTGTCTCTAAACTGATTTTCCATGAGAGTGTGATGATAGTGGTAGCTCGCGGTGATAAGAGTGGAGAAGATGGTATCCCCATGCTGCTCAAGATACCGCGTTTATTCGATCCTTGGGGTGGTTACAGTGTCATCGGTTTCGGGGACATAATTTTACCAGGGCTTTAG

Protein sequence

>Msa1146010

MPSFTPIFFFSVFMVLLTFSFAGDIVHHDSIAPKKPGCDNNFVLVKVPISIDGVESGEYVGVGARFGPTLESKEKRANHTRVAIADPPDCCSKPKNKLTGEIILVHRGQCSFTTKANIAEEAGASAILIINNAKGLFKMVCENETDIDIGIPAVMLPLDAGEALKKYIQNKSTVSVQLYSPRRPQVDVAEVFLWLMAVGTILCASYWSAWTAREGVIEQEKLLKDDSDELLNIENAGSSAFLEISTTAALSFVVIASCFLFMLYKLMGRWFIDVLVVLFCIGGVEGLQTCLVALLSHFRWSQHAAQTYVKVPFFGAVSHLTLAVTPFCIAFAVVWGVERRVSYAWIGQDILGIALIITVLQIVQIPNLKVGTVLLSCAFLYDIFWVFVSKLIFHESVMIVVARGDKSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGL*