AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0444770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0444770 MtrunA17_Chr3g0084881 95.855 193 8 0 1 193 1 193 1.74e-122 343
Msa0444770 MtrunA17_Chr3g0082061 55.000 60 26 1 89 147 16 75 1.02e-14 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0444770 AT5G40950.1 63.636 198 65 4 1 193 3 198 7.30e-73 219
Msa0444770 AT5G15220.2 56.989 93 39 1 56 147 45 137 3.39e-24 93.6
Msa0444770 AT5G15220.1 56.989 93 39 1 56 147 45 137 3.39e-24 93.6
Msa0444770 AT2G16930.1 65.278 72 25 0 56 127 45 116 4.29e-24 93.2
Msa0444770 AT2G16930.3 65.278 72 25 0 56 127 45 116 4.29e-24 93.2
Msa0444770 AT2G16930.4 65.278 72 25 0 56 127 45 116 4.29e-24 93.2
Msa0444770 AT2G16930.2 65.278 72 25 0 56 127 45 116 4.29e-24 93.2

Find 99 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCTCGGTGTTAAAGTTTA+TGG 0.177876 3_3:-18182676 Msa0444770:CDS
ACTTCACAACTCCATCAATT+AGG 0.238473 3_3:+18180668 None:intergenic
CACTGTCCTGTAATTGGCTT+GGG 0.243091 3_3:+18180201 None:intergenic
TCCATCAATTAGGGAGAAAA+TGG 0.286561 3_3:+18180678 None:intergenic
CTCCCTTCTTGTGAGCATTC+CGG 0.294541 3_3:+18182737 None:intergenic
AGTGGTAGAACCAGATAAAA+AGG 0.297027 3_3:+18182819 None:intergenic
GTAGCCATTCACTTTCAATT+TGG 0.303858 3_3:-18180179 Msa0444770:three_prime_UTR
GGCGGAGTCACGGCCATTCT+TGG 0.313723 3_3:+18182705 None:intergenic
TGGCTACACTGTCCTGTAAT+TGG 0.318209 3_3:+18180195 None:intergenic
TAAATGCAGGGCATATATTA+TGG 0.324531 3_3:-18179943 Msa0444770:three_prime_UTR
TAAGGAAGATAGAGTACTTC+AGG 0.334007 3_3:-18180474 Msa0444770:CDS
ACCCCGATAGCTATAGATTA+AGG 0.337827 3_3:-18180492 Msa0444770:CDS
ATATGGACCTGACAAGAAAA+AGG 0.362247 3_3:-18180638 Msa0444770:intron
AGTGTCCCCAAGCCAATTAC+AGG 0.363660 3_3:-18180207 Msa0444770:three_prime_UTR
TTTCAATGTGTAAAATCTTT+CGG 0.364653 3_3:-18180330 Msa0444770:three_prime_UTR
CCATTCACTTTCAATTTGGT+TGG 0.388218 3_3:-18180175 Msa0444770:three_prime_UTR
CATTCACTTTCAATTTGGTT+GGG 0.388910 3_3:-18180174 Msa0444770:three_prime_UTR
AAATGAAGAGGAGGTGGATA+AGG 0.389690 3_3:+18182987 None:intergenic
GATGAGACGTGAACGCAAAA+AGG 0.391120 3_3:-18180452 Msa0444770:CDS
ATATTATGGTACTACACAAT+TGG 0.395582 3_3:-18179929 Msa0444770:three_prime_UTR
ATATAACAGGTACAATCTTC+AGG 0.397123 3_3:+18179996 None:intergenic
TAGCTATCGGGGTTCGGAAC+TGG 0.398737 3_3:+18180502 None:intergenic
TTCCTTAATCTATAGCTATC+GGG 0.403484 3_3:+18180490 None:intergenic
GAGGTGGATAAGGGGAAAAG+TGG 0.403796 3_3:+18182997 None:intergenic
CTTCACAACTCCATCAATTA+GGG 0.405071 3_3:+18180669 None:intergenic
ATCGGTCTGCACTGATAATC+CGG 0.408476 3_3:-18182756 Msa0444770:CDS
TTCTATTTGAGTAAATGAAA+TGG 0.409882 3_3:-18180142 Msa0444770:three_prime_UTR
AATGAAGAGGAGGTGGATAA+GGG 0.413080 3_3:+18182988 None:intergenic
TTCCACCATGGCTGTATGCA+TGG 0.414968 3_3:-18182908 Msa0444770:exon
AGTGAGAGATAAGAGATTCA+AGG 0.416042 3_3:+18182951 None:intergenic
AATGTGCTCTAAAATATAAC+AGG 0.416967 3_3:+18179983 None:intergenic
GTTGTGAAGTTTGAGAAATA+TGG 0.419378 3_3:-18180655 Msa0444770:CDS
GAAGTATAGAATCAACAATC+TGG 0.424433 3_3:+18180358 None:intergenic
ATGAGGGAGAAGAGAGTGAA+AGG 0.424623 3_3:+18182857 None:intergenic
GGGACACTAAGGAAAAGTTT+TGG 0.428612 3_3:+18180222 None:intergenic
ACACTGTCCTGTAATTGGCT+TGG 0.430782 3_3:+18180200 None:intergenic
ACAGCCATGGTGGAAACTGC+TGG 0.445803 3_3:+18182916 None:intergenic
GCAGGAAAGAATGTAGGAAT+TGG 0.450063 3_3:-18180712 Msa0444770:CDS
CTTCCTTAATCTATAGCTAT+CGG 0.452680 3_3:+18180489 None:intergenic
AATCTATAGCTATCGGGGTT+CGG 0.454206 3_3:+18180496 None:intergenic
TTTAACACCGAGACGCCTTC+CGG 0.456051 3_3:+18182684 None:intergenic
TCCACCATGGCTGTATGCAT+GGG 0.465483 3_3:-18182907 Msa0444770:exon
TGAGGGAGAAGAGAGTGAAA+GGG 0.479607 3_3:+18182858 None:intergenic
CCAAACAAAACTATAAATGC+AGG 0.481681 3_3:-18179956 Msa0444770:three_prime_UTR
AGACAATATTACAATGCTAA+AGG 0.483377 3_3:+18180280 None:intergenic
GACTCCGCCGGAAGGCGTCT+CGG 0.483393 3_3:-18182691 Msa0444770:CDS
TTCGGAACTGGTTCTTCTCG+TGG 0.494529 3_3:+18180514 None:intergenic
GGAAGATGAAGATGAAGATG+AGG 0.496509 3_3:+18182840 None:intergenic
AGAGATAAGAGATTCAAGGA+AGG 0.500114 3_3:+18182955 None:intergenic
GGTGACCAGGTCGCTAAGCC+TGG 0.500156 3_3:-18182655 Msa0444770:CDS
CCAACCAAATTGAAAGTGAA+TGG 0.506387 3_3:+18180175 None:intergenic
TCCACGCTGACGAACAATGA+TGG 0.507312 3_3:+18182630 None:intergenic
GACGCCTTCCGGCGGAGTCA+CGG 0.509126 3_3:+18182695 None:intergenic
AGGTGGATAAGGGGAAAAGT+GGG 0.521172 3_3:+18182998 None:intergenic
GAGATAAGAGATTCAAGGAA+GGG 0.522019 3_3:+18182956 None:intergenic
CTCTATTGCGGCATCATCAA+CGG 0.525471 3_3:+18180384 None:intergenic
GCAGACCGATGATGAATTCG+AGG 0.535895 3_3:+18182769 None:intergenic
GAAATGAAATGAAGAGGAGG+TGG 0.536886 3_3:+18182981 None:intergenic
GAGGCCAAGTTTGAAAACTT+AGG 0.538642 3_3:+18180046 None:intergenic
TAATTGGCTTGGGGACACTA+AGG 0.541583 3_3:+18180211 None:intergenic
TCGGAACTGGTTCTTCTCGT+GGG 0.545521 3_3:+18180515 None:intergenic
AATGCTCACAAGAAGGGAGC+AGG 0.545655 3_3:-18182733 Msa0444770:CDS
TCAACTTAGATCGGTTGTAA+AGG 0.545945 3_3:+18180081 None:intergenic
TGGAACCAGGCTTAGCGACC+TGG 0.546580 3_3:+18182650 None:intergenic
GAAGATGAAGATGAAGATGA+GGG 0.547400 3_3:+18182841 None:intergenic
TCCATCATTGTTCGTCAGCG+TGG 0.555721 3_3:-18182631 Msa0444770:CDS
AATCCGGAATGCTCACAAGA+AGG 0.555772 3_3:-18182740 Msa0444770:CDS
GGAGCAGGAAGTACCAAGAA+TGG 0.561066 3_3:-18182718 Msa0444770:CDS
AGGGATGAAATGAAATGAAG+AGG 0.562517 3_3:+18182975 None:intergenic
AACTAAGCATCAACTTAGAT+CGG 0.563138 3_3:+18180072 None:intergenic
AAGAATGGCCGTGACTCCGC+CGG 0.568410 3_3:-18182703 Msa0444770:CDS
ATGAAGAGGAGGTGGATAAG+GGG 0.568474 3_3:+18182989 None:intergenic
TTTCACGCAGGAAAGAATGT+AGG 0.568792 3_3:-18180718 Msa0444770:CDS
ATCCGGAATGCTCACAAGAA+GGG 0.574035 3_3:-18182739 Msa0444770:CDS
CTCTCCCTCGAATTCATCAT+CGG 0.577761 3_3:-18182774 Msa0444770:CDS
TCCTTAATCTATAGCTATCG+GGG 0.582549 3_3:+18180491 None:intergenic
TGTTAAAGTTTATGGTGACC+AGG 0.587699 3_3:-18182668 Msa0444770:CDS
TGTTCGTCAGCGTGGAACCA+AGG 0.607342 3_3:-18182623 Msa0444770:intron
CAGAGAAATTGAACCATACA+CGG 0.614937 3_3:-18180245 Msa0444770:three_prime_UTR
ATGGCCGTGACTCCGCCGGA+AGG 0.619907 3_3:-18182699 Msa0444770:CDS
AAAGAATGTAGGAATTGGCA+AGG 0.623999 3_3:-18180707 Msa0444770:CDS
CAGCCATGGTGGAAACTGCT+GGG 0.624425 3_3:+18182917 None:intergenic
TGACGAACAATGATGGAACC+AGG 0.627337 3_3:+18182637 None:intergenic
CAAACAAAACTATAAATGCA+GGG 0.633434 3_3:-18179955 Msa0444770:three_prime_UTR
CAATTAGGGAGAAAATGGTA+TGG 0.636675 3_3:+18180683 None:intergenic
ACAATCTGGATTCTCTATTG+CGG 0.641419 3_3:+18180372 None:intergenic
GATGAAATGAAATGAAGAGG+AGG 0.641453 3_3:+18182978 None:intergenic
TGATGGAGTCATACGAAGAG+TGG 0.646269 3_3:+18182801 None:intergenic
ACAATCTTCAGGATAACACT+AGG 0.647628 3_3:+18180007 None:intergenic
AACACCGAGACGCCTTCCGG+CGG 0.649948 3_3:+18182687 None:intergenic
ACCCATGCATACAGCCATGG+TGG 0.650077 3_3:+18182906 None:intergenic
ATTCGAGGGAGAGTTACTGA+TGG 0.652700 3_3:+18182784 None:intergenic
CAAAACTTGAAGTTTCACGC+AGG 0.664756 3_3:-18180730 Msa0444770:intron
ACTGTCCTGTAATTGGCTTG+GGG 0.669136 3_3:+18180202 None:intergenic
GAAACCCATGCATACAGCCA+TGG 0.673634 3_3:+18182903 None:intergenic
CAGACCGATGATGAATTCGA+GGG 0.678497 3_3:+18182770 None:intergenic
CAACCCAGCAGTTTCCACCA+TGG 0.700016 3_3:-18182920 Msa0444770:exon
ACGGAAGCGAGCATTAGCTG+TGG 0.714472 3_3:+18180403 None:intergenic
AGGACATGTCACATAGACAG+AGG 0.721372 3_3:+18180027 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATGAATTTTGAAATTA+TGG - chr3_3:18180419-18180438 Msa0444770:CDS 10.0%
!! TGAAAAAAGAAAAAAAAAAT+TGG - chr3_3:18180481-18180500 Msa0444770:CDS 10.0%
!!! ACATAATTTATGTTTTCTAT+AGG + chr3_3:18180529-18180548 None:intergenic 15.0%
!! TTCATTATTATTTAGACATT+TGG + chr3_3:18180828-18180847 None:intergenic 15.0%
!! CTTGATATTATAGAAAATTA+CGG - chr3_3:18181869-18181888 Msa0444770:intron 15.0%
!!! TTTTAGTAAGAAAAGAATTG+TGG - chr3_3:18180366-18180385 Msa0444770:exon 20.0%
!! CAAAATTCATATAACAATTC+AGG + chr3_3:18180413-18180432 None:intergenic 20.0%
!! TAGAAAACATAAATTATGTC+TGG - chr3_3:18180530-18180549 Msa0444770:intron 20.0%
!! TTGCAGTAATGATAAAATTT+AGG + chr3_3:18180909-18180928 None:intergenic 20.0%
!! AAGATTTGATTGTTATGATT+TGG - chr3_3:18181430-18181449 Msa0444770:intron 20.0%
!!! TTTCCTCTTTTTTAAGTTTA+TGG - chr3_3:18181485-18181504 Msa0444770:intron 20.0%
!! AATCCATAAACTTAAAAAAG+AGG + chr3_3:18181491-18181510 None:intergenic 20.0%
!!! AGATTCTTTTGATATTTCTT+TGG - chr3_3:18181586-18181605 Msa0444770:intron 20.0%
!!! AAGAAGTTCTTTAAAAGTTA+TGG + chr3_3:18181760-18181779 None:intergenic 20.0%
!!! CGTAATTTTCTATAATATCA+AGG + chr3_3:18181871-18181890 None:intergenic 20.0%
!!! CTTATCATGATTTTAAATTG+CGG + chr3_3:18181995-18182014 None:intergenic 20.0%
!!! GCAATTTAAAATCATGATAA+GGG - chr3_3:18181994-18182013 Msa0444770:intron 20.0%
!!! CTTATCATGATTTTAAATTG+CGG + chr3_3:18181995-18182014 None:intergenic 20.0%
!!! GCAATTTAAAATCATGATAA+GGG - chr3_3:18181994-18182013 Msa0444770:intron 20.0%
!! TTCAACAATATCTTAAAAAC+TGG + chr3_3:18182119-18182138 None:intergenic 20.0%
!! TTTCAATGTGTAAAATCTTT+CGG - chr3_3:18182585-18182604 Msa0444770:intron 20.0%
!! TTCTATTTGAGTAAATGAAA+TGG - chr3_3:18182773-18182792 Msa0444770:CDS 20.0%
! GTTCTTAATGACAATTAACA+TGG + chr3_3:18180445-18180464 None:intergenic 25.0%
! TGTCATTAAGAACTATACTT+TGG - chr3_3:18180452-18180471 Msa0444770:CDS 25.0%
! AAAACATAAATTATGTCTGG+AGG - chr3_3:18180533-18180552 Msa0444770:intron 25.0%
!!! ATGATTAGTCTAGTAATTGT+TGG - chr3_3:18180850-18180869 Msa0444770:intron 25.0%
!! ATTTTATCATTACTGCAAAC+AGG - chr3_3:18180911-18180930 Msa0444770:intron 25.0%
!! TTTTATCATTACTGCAAACA+GGG - chr3_3:18180912-18180931 Msa0444770:intron 25.0%
! TATAAAGTAATGATACGAAG+AGG + chr3_3:18181035-18181054 None:intergenic 25.0%
!! CGCAATTTAAAATCATGATA+AGG - chr3_3:18181993-18182012 Msa0444770:intron 25.0%
!! CGCAATTTAAAATCATGATA+AGG - chr3_3:18181993-18182012 Msa0444770:intron 25.0%
!!! TATTACCTTACTGTTTCTTT+TGG - chr3_3:18182143-18182162 Msa0444770:intron 25.0%
!! TTTATTACCTTTTTCTTGTC+AGG + chr3_3:18182287-18182306 None:intergenic 25.0%
! AGACAATATTACAATGCTAA+AGG + chr3_3:18182638-18182657 None:intergenic 25.0%
!!! GTAATATTGTCTTTGTTTTC+TGG - chr3_3:18182646-18182665 Msa0444770:CDS 25.0%
!!! AATGTGCTCTAAAATATAAC+AGG + chr3_3:18182935-18182954 None:intergenic 25.0%
! CAAACAAAACTATAAATGCA+GGG - chr3_3:18182960-18182979 Msa0444770:five_prime_UTR 25.0%
! ATATTATGGTACTACACAAT+TGG - chr3_3:18182986-18183005 Msa0444770:five_prime_UTR 25.0%
! TCTTCATCTTCCTTTTTATC+TGG - chr3_3:18180086-18180105 Msa0444770:three_prime_UTR 30.0%
AAACAAAACAGAACAGAACT+AGG + chr3_3:18180785-18180804 None:intergenic 30.0%
CACGGATATTAGTATAAAAC+TGG - chr3_3:18181089-18181108 Msa0444770:intron 30.0%
CAATCGAAAATTCATACAGA+AGG + chr3_3:18181220-18181239 None:intergenic 30.0%
! TTTGCTATGAAATCTACTGT+CGG - chr3_3:18181341-18181360 Msa0444770:intron 30.0%
AAATCTTATCTCAGTACACA+GGG + chr3_3:18181417-18181436 None:intergenic 30.0%
! TGTTATGATTTGGCACAATT+TGG - chr3_3:18181440-18181459 Msa0444770:intron 30.0%
TTCTCTTTGTATGCATTTCT+AGG + chr3_3:18181631-18181650 None:intergenic 30.0%
! GGTGACTTTGATTTAAAACA+TGG + chr3_3:18181836-18181855 None:intergenic 30.0%
CAAATACAGACTCAATGTAA+AGG + chr3_3:18181956-18181975 None:intergenic 30.0%
TTACATTGAGTCTGTATTTG+TGG - chr3_3:18181956-18181975 Msa0444770:intron 30.0%
!! TAAGGGTGTTATAGTATTTG+TGG - chr3_3:18182011-18182030 Msa0444770:intron 30.0%
GTGTTATAGTATTTGTGGTT+GGG - chr3_3:18182016-18182035 Msa0444770:intron 30.0%
TGTTATAGTATTTGTGGTTG+GGG - chr3_3:18182017-18182036 Msa0444770:intron 30.0%
!! AATCATGATAAGGGTGTTAT+AGG - chr3_3:18182003-18182022 Msa0444770:intron 30.0%
TAGAACCAAAAGAAACAGTA+AGG + chr3_3:18182151-18182170 None:intergenic 30.0%
GTTGTGAAGTTTGAGAAATA+TGG - chr3_3:18182260-18182279 Msa0444770:intron 30.0%
ATAAATAGTCTTTCACTGCT+TGG - chr3_3:18182302-18182321 Msa0444770:intron 30.0%
AATTTGTACTGTAGGATTAC+AGG + chr3_3:18182337-18182356 None:intergenic 30.0%
!! AGCTAGTTAATTTGTACTGT+AGG + chr3_3:18182345-18182364 None:intergenic 30.0%
TTCCTTAATCTATAGCTATC+GGG + chr3_3:18182428-18182447 None:intergenic 30.0%
CTTCCTTAATCTATAGCTAT+CGG + chr3_3:18182429-18182448 None:intergenic 30.0%
GAAGTATAGAATCAACAATC+TGG + chr3_3:18182560-18182579 None:intergenic 30.0%
CATTCACTTTCAATTTGGTT+GGG - chr3_3:18182741-18182760 Msa0444770:CDS 30.0%
AACTAAGCATCAACTTAGAT+CGG + chr3_3:18182846-18182865 None:intergenic 30.0%
! TTCACCTAAGTTTTCAAACT+TGG - chr3_3:18182865-18182884 Msa0444770:CDS 30.0%
ATATAACAGGTACAATCTTC+AGG + chr3_3:18182922-18182941 None:intergenic 30.0%
!!! CCTGCATTTATAGTTTTGTT+TGG + chr3_3:18182962-18182981 None:intergenic 30.0%
CCAAACAAAACTATAAATGC+AGG - chr3_3:18182959-18182978 Msa0444770:five_prime_UTR 30.0%
TAAATGCAGGGCATATATTA+TGG - chr3_3:18182972-18182991 Msa0444770:five_prime_UTR 30.0%
GATGAAATGAAATGAAGAGG+AGG + chr3_3:18179940-18179959 None:intergenic 35.0%
AGGGATGAAATGAAATGAAG+AGG + chr3_3:18179943-18179962 None:intergenic 35.0%
GAGATAAGAGATTCAAGGAA+GGG + chr3_3:18179962-18179981 None:intergenic 35.0%
AGAGATAAGAGATTCAAGGA+AGG + chr3_3:18179963-18179982 None:intergenic 35.0%
AGTGAGAGATAAGAGATTCA+AGG + chr3_3:18179967-18179986 None:intergenic 35.0%
GAAGATGAAGATGAAGATGA+GGG + chr3_3:18180077-18180096 None:intergenic 35.0%
AGTGGTAGAACCAGATAAAA+AGG + chr3_3:18180099-18180118 None:intergenic 35.0%
TGTTAAAGTTTATGGTGACC+AGG - chr3_3:18180247-18180266 Msa0444770:three_prime_UTR 35.0%
! GAAAGTTAGTGTGTCATTCA+CGG - chr3_3:18181071-18181090 Msa0444770:intron 35.0%
CTTCAGAAAGAATGTAAGAG+TGG - chr3_3:18181174-18181193 Msa0444770:intron 35.0%
AATGTAAGAGTGGAGGTTTA+TGG - chr3_3:18181184-18181203 Msa0444770:intron 35.0%
CTATATCTACCTATTCAGAG+GGG + chr3_3:18181317-18181336 None:intergenic 35.0%
GCTATATCTACCTATTCAGA+GGG + chr3_3:18181318-18181337 None:intergenic 35.0%
CAGTAGATTTCATAGCAAAC+AGG + chr3_3:18181340-18181359 None:intergenic 35.0%
ACTGTCGGTGAATACAAATT+TGG - chr3_3:18181356-18181375 Msa0444770:intron 35.0%
ATACAAATTTGGCACAACTG+AGG - chr3_3:18181367-18181386 Msa0444770:intron 35.0%
CAAATCTTATCTCAGTACAC+AGG + chr3_3:18181418-18181437 None:intergenic 35.0%
CAGAGTAATAAATGCTACTG+TGG - chr3_3:18181797-18181816 Msa0444770:intron 35.0%
TAAATCAAAGTCACCGTTAG+TGG - chr3_3:18181841-18181860 Msa0444770:intron 35.0%
ATATCAAGGATCACCACTAA+CGG + chr3_3:18181857-18181876 None:intergenic 35.0%
ATTGAGTCTGTATTTGTGGT+TGG - chr3_3:18181960-18181979 Msa0444770:intron 35.0%
TTGAGTCTGTATTTGTGGTT+GGG - chr3_3:18181961-18181980 Msa0444770:intron 35.0%
! GGTGTTATAGTATTTGTGGT+TGG - chr3_3:18182015-18182034 Msa0444770:intron 35.0%
AAAGAATGTAGGAATTGGCA+AGG - chr3_3:18182208-18182227 Msa0444770:intron 35.0%
CAATTAGGGAGAAAATGGTA+TGG + chr3_3:18182235-18182254 None:intergenic 35.0%
! ACCATTTTCTCCCTAATTGA+TGG - chr3_3:18182236-18182255 Msa0444770:intron 35.0%
TCCATCAATTAGGGAGAAAA+TGG + chr3_3:18182240-18182259 None:intergenic 35.0%
CTTCACAACTCCATCAATTA+GGG + chr3_3:18182249-18182268 None:intergenic 35.0%
ACTTCACAACTCCATCAATT+AGG + chr3_3:18182250-18182269 None:intergenic 35.0%
ATATGGACCTGACAAGAAAA+AGG - chr3_3:18182277-18182296 Msa0444770:intron 35.0%
TCCTTAATCTATAGCTATCG+GGG + chr3_3:18182427-18182446 None:intergenic 35.0%
! TAAGGAAGATAGAGTACTTC+AGG - chr3_3:18182441-18182460 Msa0444770:intron 35.0%
ACAATCTGGATTCTCTATTG+CGG + chr3_3:18182546-18182565 None:intergenic 35.0%
CAGAGAAATTGAACCATACA+CGG - chr3_3:18182670-18182689 Msa0444770:CDS 35.0%
GTAGCCATTCACTTTCAATT+TGG - chr3_3:18182736-18182755 Msa0444770:CDS 35.0%
CCAACCAAATTGAAAGTGAA+TGG + chr3_3:18182743-18182762 None:intergenic 35.0%
CCATTCACTTTCAATTTGGT+TGG - chr3_3:18182740-18182759 Msa0444770:CDS 35.0%
TCAACTTAGATCGGTTGTAA+AGG + chr3_3:18182837-18182856 None:intergenic 35.0%
ACAATCTTCAGGATAACACT+AGG + chr3_3:18182911-18182930 None:intergenic 35.0%
AATGAAGAGGAGGTGGATAA+GGG + chr3_3:18179930-18179949 None:intergenic 40.0%
AAATGAAGAGGAGGTGGATA+AGG + chr3_3:18179931-18179950 None:intergenic 40.0%
GAAATGAAATGAAGAGGAGG+TGG + chr3_3:18179937-18179956 None:intergenic 40.0%
GGAAGATGAAGATGAAGATG+AGG + chr3_3:18180078-18180097 None:intergenic 40.0%
!! CGTCTCGGTGTTAAAGTTTA+TGG - chr3_3:18180239-18180258 Msa0444770:three_prime_UTR 40.0%
AGAGAATGAAAGACACACCT+TGG + chr3_3:18180312-18180331 None:intergenic 40.0%
!! TCAGCATTGACAGTTGAGTT+TGG + chr3_3:18180559-18180578 None:intergenic 40.0%
!! TTCGAACCGAGAAAAGTGTT+CGG + chr3_3:18180592-18180611 None:intergenic 40.0%
!! ACTTTTCTCGGTTCGAAAAC+AGG - chr3_3:18180595-18180614 Msa0444770:intron 40.0%
TGACCTTATAAAGTGCGCTT+TGG - chr3_3:18180941-18180960 Msa0444770:intron 40.0%
GACCTTATAAAGTGCGCTTT+GGG - chr3_3:18180942-18180961 Msa0444770:intron 40.0%
TTTATAAGAGTGACCTGACG+TGG - chr3_3:18181049-18181068 Msa0444770:intron 40.0%
CAGAAAGAATGTAAGAGTGG+AGG - chr3_3:18181177-18181196 Msa0444770:intron 40.0%
TGGAGGTTTATGGTTTGATG+TGG - chr3_3:18181194-18181213 Msa0444770:intron 40.0%
GGCTATATCTACCTATTCAG+AGG + chr3_3:18181319-18181338 None:intergenic 40.0%
AGTACACAGGGTTAACTACA+TGG + chr3_3:18181405-18181424 None:intergenic 40.0%
ATGCTACTGTGGAAGTAATG+AGG - chr3_3:18181808-18181827 Msa0444770:intron 40.0%
TGCTACTGTGGAAGTAATGA+GGG - chr3_3:18181809-18181828 Msa0444770:intron 40.0%
!! ATTTGCTTTTGCGATGCCAT+TGG - chr3_3:18181916-18181935 Msa0444770:intron 40.0%
TGAGTCTGTATTTGTGGTTG+GGG - chr3_3:18181962-18181981 Msa0444770:intron 40.0%
ATAGTATTTGTGGTTGGGGT+TGG - chr3_3:18182021-18182040 Msa0444770:intron 40.0%
TAGTATTTGTGGTTGGGGTT+GGG - chr3_3:18182022-18182041 Msa0444770:intron 40.0%
CAAAACTTGAAGTTTCACGC+AGG - chr3_3:18182185-18182204 Msa0444770:intron 40.0%
TTTCACGCAGGAAAGAATGT+AGG - chr3_3:18182197-18182216 Msa0444770:intron 40.0%
GCAGGAAAGAATGTAGGAAT+TGG - chr3_3:18182203-18182222 Msa0444770:intron 40.0%
AATCTATAGCTATCGGGGTT+CGG + chr3_3:18182422-18182441 None:intergenic 40.0%
ACCCCGATAGCTATAGATTA+AGG - chr3_3:18182423-18182442 Msa0444770:intron 40.0%
! GGGACACTAAGGAAAAGTTT+TGG + chr3_3:18182696-18182715 None:intergenic 40.0%
GAGGCCAAGTTTGAAAACTT+AGG + chr3_3:18182872-18182891 None:intergenic 40.0%
AGGTGGATAAGGGGAAAAGT+GGG + chr3_3:18179920-18179939 None:intergenic 45.0%
ATGAAGAGGAGGTGGATAAG+GGG + chr3_3:18179929-18179948 None:intergenic 45.0%
TGAGGGAGAAGAGAGTGAAA+GGG + chr3_3:18180060-18180079 None:intergenic 45.0%
ATGAGGGAGAAGAGAGTGAA+AGG + chr3_3:18180061-18180080 None:intergenic 45.0%
TGATGGAGTCATACGAAGAG+TGG + chr3_3:18180117-18180136 None:intergenic 45.0%
ATTCGAGGGAGAGTTACTGA+TGG + chr3_3:18180134-18180153 None:intergenic 45.0%
CTCTCCCTCGAATTCATCAT+CGG - chr3_3:18180141-18180160 Msa0444770:three_prime_UTR 45.0%
CAGACCGATGATGAATTCGA+GGG + chr3_3:18180148-18180167 None:intergenic 45.0%
! ATCGGTCTGCACTGATAATC+CGG - chr3_3:18180159-18180178 Msa0444770:three_prime_UTR 45.0%
AATCCGGAATGCTCACAAGA+AGG - chr3_3:18180175-18180194 Msa0444770:three_prime_UTR 45.0%
ATCCGGAATGCTCACAAGAA+GGG - chr3_3:18180176-18180195 Msa0444770:three_prime_UTR 45.0%
! TGACGAACAATGATGGAACC+AGG + chr3_3:18180281-18180300 None:intergenic 45.0%
! GCTAGACCGAACACTTTTCT+CGG - chr3_3:18180583-18180602 Msa0444770:intron 45.0%
! CAGTTGTGTGCGTGAGTTTT+AGG - chr3_3:18180626-18180645 Msa0444770:intron 45.0%
!!! TTGTGTGCGTGAGTTTTAGG+TGG - chr3_3:18180629-18180648 Msa0444770:intron 45.0%
ACAGAACAGAACTAGGCACT+TGG + chr3_3:18180778-18180797 None:intergenic 45.0%
! CTTATAAAGTGCGCTTTGGG+CGG - chr3_3:18180945-18180964 Msa0444770:intron 45.0%
ACACACTAACTTTCCACGTC+AGG + chr3_3:18181065-18181084 None:intergenic 45.0%
TCACAGTTTGTGCAATCTCG+CGG - chr3_3:18181244-18181263 Msa0444770:intron 45.0%
! TTGTGCAATCTCGCGGATTA+AGG - chr3_3:18181251-18181270 Msa0444770:intron 45.0%
! TGTGCAATCTCGCGGATTAA+GGG - chr3_3:18181252-18181271 Msa0444770:intron 45.0%
GGTTCTTGAACTCTCACCAA+TGG + chr3_3:18181935-18181954 None:intergenic 45.0%
TCTGTATTTGTGGTTGGGGT+TGG - chr3_3:18181966-18181985 Msa0444770:intron 45.0%
CTGTATTTGTGGTTGGGGTT+GGG - chr3_3:18181967-18181986 Msa0444770:intron 45.0%
TGTATTTGTGGTTGGGGTTG+GGG - chr3_3:18181968-18181987 Msa0444770:intron 45.0%
AGTATTTGTGGTTGGGGTTG+GGG - chr3_3:18182023-18182042 Msa0444770:intron 45.0%
GATGAGACGTGAACGCAAAA+AGG - chr3_3:18182463-18182482 Msa0444770:intron 45.0%
CTCTATTGCGGCATCATCAA+CGG + chr3_3:18182534-18182553 None:intergenic 45.0%
!! GGAAAAGTTTTGGCCGTGTA+TGG + chr3_3:18182686-18182705 None:intergenic 45.0%
!! TAATTGGCTTGGGGACACTA+AGG + chr3_3:18182707-18182726 None:intergenic 45.0%
!! ACTGTCCTGTAATTGGCTTG+GGG + chr3_3:18182716-18182735 None:intergenic 45.0%
! CACTGTCCTGTAATTGGCTT+GGG + chr3_3:18182717-18182736 None:intergenic 45.0%
ACACTGTCCTGTAATTGGCT+TGG + chr3_3:18182718-18182737 None:intergenic 45.0%
TGGCTACACTGTCCTGTAAT+TGG + chr3_3:18182723-18182742 None:intergenic 45.0%
AGGACATGTCACATAGACAG+AGG + chr3_3:18182891-18182910 None:intergenic 45.0%
GAGGTGGATAAGGGGAAAAG+TGG + chr3_3:18179921-18179940 None:intergenic 50.0%
TTCCACCATGGCTGTATGCA+TGG - chr3_3:18180007-18180026 Msa0444770:three_prime_UTR 50.0%
TCCACCATGGCTGTATGCAT+GGG - chr3_3:18180008-18180027 Msa0444770:three_prime_UTR 50.0%
GAAACCCATGCATACAGCCA+TGG + chr3_3:18180015-18180034 None:intergenic 50.0%
GCAGACCGATGATGAATTCG+AGG + chr3_3:18180149-18180168 None:intergenic 50.0%
CTCCCTTCTTGTGAGCATTC+CGG + chr3_3:18180181-18180200 None:intergenic 50.0%
AATGCTCACAAGAAGGGAGC+AGG - chr3_3:18180182-18180201 Msa0444770:three_prime_UTR 50.0%
!! GGAGCAGGAAGTACCAAGAA+TGG - chr3_3:18180197-18180216 Msa0444770:three_prime_UTR 50.0%
TTTAACACCGAGACGCCTTC+CGG + chr3_3:18180234-18180253 None:intergenic 50.0%
TCCATCATTGTTCGTCAGCG+TGG - chr3_3:18180284-18180303 Msa0444770:three_prime_UTR 50.0%
TCCACGCTGACGAACAATGA+TGG + chr3_3:18180288-18180307 None:intergenic 50.0%
CGCCCAAAGCGCACTTTATA+AGG + chr3_3:18180947-18180966 None:intergenic 50.0%
CGTGCATTTCCCCTCTGAAT+AGG - chr3_3:18181305-18181324 Msa0444770:intron 50.0%
GGCACAACTGAGGCACAATT+TGG - chr3_3:18181377-18181396 Msa0444770:intron 50.0%
GTATTTGTGGTTGGGGTTGG+GGG - chr3_3:18181969-18181988 Msa0444770:intron 50.0%
GTATTTGTGGTTGGGGTTGG+GGG - chr3_3:18181969-18181988 Msa0444770:intron 50.0%
! TCGGAACTGGTTCTTCTCGT+GGG + chr3_3:18182403-18182422 None:intergenic 50.0%
! TTCGGAACTGGTTCTTCTCG+TGG + chr3_3:18182404-18182423 None:intergenic 50.0%
AGTGTCCCCAAGCCAATTAC+AGG - chr3_3:18182708-18182727 Msa0444770:CDS 50.0%
CAACCCAGCAGTTTCCACCA+TGG - chr3_3:18179995-18180014 Msa0444770:three_prime_UTR 55.0%
! CAGCCATGGTGGAAACTGCT+GGG + chr3_3:18180001-18180020 None:intergenic 55.0%
! ACAGCCATGGTGGAAACTGC+TGG + chr3_3:18180002-18180021 None:intergenic 55.0%
ACCCATGCATACAGCCATGG+TGG + chr3_3:18180012-18180031 None:intergenic 55.0%
TGTTCGTCAGCGTGGAACCA+AGG - chr3_3:18180292-18180311 Msa0444770:three_prime_UTR 55.0%
CTCACGCACACAACTGTGTG+AGG + chr3_3:18180622-18180641 None:intergenic 55.0%
TAGCTATCGGGGTTCGGAAC+TGG + chr3_3:18182416-18182435 None:intergenic 55.0%
ACGGAAGCGAGCATTAGCTG+TGG + chr3_3:18182515-18182534 None:intergenic 55.0%
AAGAATGGCCGTGACTCCGC+CGG - chr3_3:18180212-18180231 Msa0444770:three_prime_UTR 60.0%
TGGAACCAGGCTTAGCGACC+TGG + chr3_3:18180268-18180287 None:intergenic 60.0%
GGCGGAGTCACGGCCATTCT+TGG + chr3_3:18180213-18180232 None:intergenic 65.0%
AACACCGAGACGCCTTCCGG+CGG + chr3_3:18180231-18180250 None:intergenic 65.0%
GGTGACCAGGTCGCTAAGCC+TGG - chr3_3:18180260-18180279 Msa0444770:three_prime_UTR 65.0%
ATGGCCGTGACTCCGCCGGA+AGG - chr3_3:18180216-18180235 Msa0444770:three_prime_UTR 70.0%
GACGCCTTCCGGCGGAGTCA+CGG + chr3_3:18180223-18180242 None:intergenic 70.0%
!! GACTCCGCCGGAAGGCGTCT+CGG - chr3_3:18180224-18180243 Msa0444770:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 18179916 18183021 18179916 ID=Msa0444770;Name=Msa0444770
chr3_3 mRNA 18179916 18183021 18179916 ID=Msa0444770-mRNA-1;Parent=Msa0444770;Name=Msa0444770-mRNA-1;_AED=0.04;_eAED=0.04;_QI=98|1|1|1|1|1|3|453|193
chr3_3 exon 18179916 18180548 18179916 ID=Msa0444770-mRNA-1:exon:3858;Parent=Msa0444770-mRNA-1
chr3_3 exon 18180639 18180740 18180639 ID=Msa0444770-mRNA-1:exon:3857;Parent=Msa0444770-mRNA-1
chr3_3 exon 18182624 18183021 18182624 ID=Msa0444770-mRNA-1:exon:3856;Parent=Msa0444770-mRNA-1
chr3_3 five_prime_UTR 18182924 18183021 18182924 ID=Msa0444770-mRNA-1:five_prime_utr;Parent=Msa0444770-mRNA-1
chr3_3 CDS 18182624 18182923 18182624 ID=Msa0444770-mRNA-1:cds;Parent=Msa0444770-mRNA-1
chr3_3 CDS 18180639 18180740 18180639 ID=Msa0444770-mRNA-1:cds;Parent=Msa0444770-mRNA-1
chr3_3 CDS 18180369 18180548 18180369 ID=Msa0444770-mRNA-1:cds;Parent=Msa0444770-mRNA-1
chr3_3 three_prime_UTR 18179916 18180368 18179916 ID=Msa0444770-mRNA-1:three_prime_utr;Parent=Msa0444770-mRNA-1
Gene Sequence

>Msa0444770

ATGGCTGTATGCATGGGTTTCAACATAGCAACAGCATTCAAATCCCTTTCACTCTCTTCTCCCTCATCTTCATCTTCATCTTCCTTTTTATCTGGTTCTACCACTCTTCGTATGACTCCATCAGTAACTCTCCCTCGAATTCATCATCGGTCTGCACTGATAATCCGGAATGCTCACAAGAAGGGAGCAGGAAGTACCAAGAATGGCCGTGACTCCGCCGGAAGGCGTCTCGGTGTTAAAGTTTATGGTGACCAGGTCGCTAAGCCTGGTTCCATCATTGTTCGTCAGCGTGGAACCAAGTTTCACGCAGGAAAGAATGTAGGAATTGGCAAGGACCATACCATTTTCTCCCTAATTGATGGAGTTGTGAAGTTTGAGAAATATGGACCTGACAAGAAAAAGATCAGTGTTTACCCACGAGAAGAACCAGTTCCGAACCCCGATAGCTATAGATTAAGGAAGATAGAGTACTTCAGGATGAGACGTGAACGCAAAAAGGCTGCTCAAGAAAGAAGAGCTTTTCAACCACAGCTAATGCTCGCTTCCGTTGATGATGCCGCAATAGAGAATCCAGATTGTTGA

Protein sequence

>Msa0444770

MAVCMGFNIATAFKSLSLSSPSSSSSSSFLSGSTTLRMTPSVTLPRIHHRSALIIRNAHKKGAGSTKNGRDSAGRRLGVKVYGDQVAKPGSIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGVVKFEKYGPDKKKISVYPREEPVPNPDSYRLRKIEYFRMRRERKKAAQERRAFQPQLMLASVDDAAIENPDC*