AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1028150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028150 MtrunA17_Chr7g0247841 98.324 537 9 0 1 537 1 537 0.0 1082
Msa1028150 MtrunA17_Chr8g0348831 80.827 532 95 3 7 537 15 540 0.0 883
Msa1028150 MtrunA17_Chr6g0475601 70.196 510 148 3 21 529 27 533 0.0 748
Msa1028150 MtrunA17_Chr7g0214221 51.303 499 240 2 22 519 30 526 3.21e-174 503
Msa1028150 MtrunA17_Chr1g0213851 54.545 231 103 1 287 517 1 229 1.09e-85 265
Msa1028150 MtrunA17_Chr1g0213841 45.133 113 61 1 174 285 6 118 1.65e-23 95.9
Msa1028150 MtrunA17_Chr1g0203091 30.769 221 112 6 341 523 145 362 3.33e-22 98.6
Msa1028150 MtrunA17_Chr3g0139491 31.076 251 141 10 274 515 89 316 4.08e-21 94.7
Msa1028150 MtrunA17_Chr1g0147151 35.256 156 86 5 345 500 162 302 7.76e-19 88.2
Msa1028150 MtrunA17_Chr1g0213831 34.021 97 64 0 37 133 30 126 2.47e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028150 AT1G01650.1 72.486 527 144 1 8 533 12 538 0.0 798
Msa1028150 AT1G63690.1 72.781 507 134 3 22 527 27 530 0.0 763
Msa1028150 AT1G63690.2 72.584 507 135 3 22 527 27 530 0.0 761
Msa1028150 AT1G01650.3 73.485 396 104 1 139 533 1 396 0.0 605
Msa1028150 AT1G01650.4 73.485 396 104 1 139 533 1 396 0.0 605
Msa1028150 AT1G01650.2 73.485 396 104 1 139 533 1 396 0.0 605
Msa1028150 AT2G43070.2 48.369 521 259 4 22 535 28 545 7.52e-162 471
Msa1028150 AT2G43070.1 48.738 515 260 3 22 535 28 539 9.64e-162 471
Msa1028150 AT2G43070.4 48.369 521 259 4 22 535 87 604 5.13e-161 471
Msa1028150 AT2G43070.3 48.738 515 260 3 22 535 87 598 7.21e-161 471
Msa1028150 AT1G05820.1 45.749 494 264 3 28 519 30 521 1.30e-145 430
Msa1028150 AT1G05820.2 45.895 475 253 3 28 500 30 502 1.34e-141 418
Msa1028150 AT1G05820.4 47.781 383 196 3 139 519 1 381 8.70e-121 361
Msa1028150 AT1G05820.3 41.910 377 215 3 28 402 30 404 3.21e-92 288
Msa1028150 AT4G33410.1 26.724 348 178 15 238 533 47 369 5.85e-21 95.1
Msa1028150 AT2G03120.1 34.503 171 97 5 345 515 161 316 6.20e-21 94.7

Find 146 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCTTGAGGTTTGGTATT+TGG 0.124495 7_1:-60794956 None:intergenic
CCATTCTCTGTGCTTCTTAC+TGG 0.166120 7_1:+60793655 Msa1028150:CDS
CTTCTTCTTCTCTGTGTTCA+TGG 0.169898 7_1:+60790982 Msa1028150:CDS
TCCACACCATCAATTGAAAT+TGG 0.185349 7_1:-60792677 None:intergenic
CTTCTTTCCCAATGACAAAA+AGG 0.201334 7_1:-60796284 None:intergenic
GGTTACAGTGTCATCGGTTT+CGG 0.211475 7_1:+60795366 Msa1028150:CDS
CATAGCATTCGCTGTGGTTT+GGG 0.211873 7_1:+60794724 Msa1028150:CDS
CCTTCCTATATGACATCTTC+TGG 0.226829 7_1:+60795116 Msa1028150:CDS
GTTTATGCTTTACAAACTAA+TGG 0.249829 7_1:+60794051 Msa1028150:CDS
TGAGCAAGAGAAGCTATTAA+AGG 0.254085 7_1:+60793707 Msa1028150:CDS
GTTACAGTGTCATCGGTTTC+GGG 0.257862 7_1:+60795367 Msa1028150:CDS
ATACATAGCTTTGAATTTGA+TGG 0.290429 7_1:+60795793 Msa1028150:CDS
AATGAAACCGATATTGATAT+TGG 0.297635 7_1:+60793332 Msa1028150:CDS
AAAGTTCCAATTTCAATTGA+TGG 0.322977 7_1:+60792671 Msa1028150:CDS
TTGTCACATCCAGGTTTCTT+AGG 0.323154 7_1:-60791058 None:intergenic
AACTAGAATACCTTATTCTT+AGG 0.323199 7_1:-60792815 None:intergenic
GCATAGCATTCGCTGTGGTT+TGG 0.331467 7_1:+60794723 Msa1028150:CDS
ACCGCGTTTATTCGATCCTT+GGG 0.332274 7_1:+60795341 Msa1028150:CDS
CTTTAGCGTTATTTATAATC+AGG 0.343087 7_1:-60793065 None:intergenic
GCTCACGGGCGAGATCATTT+TGG 0.348166 7_1:+60792975 Msa1028150:intron
GGGTATCGCTTTGATAATTA+CGG 0.355376 7_1:+60794920 Msa1028150:intron
TTGTAGCAAACCTAAGAATA+AGG 0.355750 7_1:+60792805 Msa1028150:CDS
AAGATGGTTCATTGATGTTC+TGG 0.357441 7_1:+60794075 Msa1028150:CDS
GTCGGTGTTGGTGCAAGATT+TGG 0.369570 7_1:+60792713 Msa1028150:CDS
CGGCAATGGCAACTCTAGTA+TGG 0.378558 7_1:-60792769 None:intergenic
TTCTTCAGCTATATTTGCCT+TGG 0.386977 7_1:-60793025 None:intergenic
TTTATGCTTTACAAACTAAT+GGG 0.398548 7_1:+60794052 Msa1028150:CDS
GTGAGAATCTTGATTGTAGA+TGG 0.398863 7_1:-60790926 None:intergenic
ATATACTTTACAGGTATGAT+TGG 0.401660 7_1:+60795594 Msa1028150:intron
CGCGGTATCTTGAGCAGCAT+GGG 0.404406 7_1:-60795324 None:intergenic
AGGTATTCCAATATCAATAT+CGG 0.409099 7_1:-60793339 None:intergenic
ACGATGAGTGCCTATGGTTT+AGG 0.409248 7_1:+60795656 Msa1028150:CDS
CCAAAGTACAAACAGATTCA+TGG 0.410036 7_1:-60796592 None:intergenic
ATGTGACAACAACTTTGTTC+TGG 0.416582 7_1:+60791072 Msa1028150:CDS
TACCGCGTTTATTCGATCCT+TGG 0.419818 7_1:+60795340 Msa1028150:CDS
ATAATCATCACCTTGAGGTT+TGG 0.432877 7_1:-60794963 None:intergenic
ATTTGAGGTGTGAAAAGAAA+AGG 0.437729 7_1:-60790901 None:intergenic
TTTGAGGTGTGAAAAGAAAA+GGG 0.438964 7_1:-60790900 None:intergenic
AAGAATATCTTGACCAATCC+AGG 0.442943 7_1:-60794771 None:intergenic
TCCAATTTCAATTGATGGTG+TGG 0.445372 7_1:+60792676 Msa1028150:CDS
TTTACTAACCAAGTGTAAAT+GGG 0.447535 7_1:-60795850 None:intergenic
CCATGAATCTGTTTGTACTT+TGG 0.451169 7_1:+60796592 Msa1028150:three_prime_UTR
GTGCTTCTTACTGGTCTGCC+TGG 0.461814 7_1:+60793664 Msa1028150:CDS
GGAGACTTATAACAAATCAT+AGG 0.463251 7_1:+60796433 Msa1028150:three_prime_UTR
AACACCCTCTCTGGCAGTCC+AGG 0.466046 7_1:-60793682 None:intergenic
CTTCCTATATGACATCTTCT+GGG 0.469044 7_1:+60795117 Msa1028150:CDS
TTTACAAACTAATGGGAAGA+TGG 0.472450 7_1:+60794059 Msa1028150:CDS
CCCTCTTGACTGTTAGATGT+TGG 0.473230 7_1:+60796564 Msa1028150:three_prime_UTR
TGGGGTGGTTACAGTGTCAT+CGG 0.481076 7_1:+60795360 Msa1028150:CDS
ACACCCAGAAGATGTCATAT+AGG 0.489454 7_1:-60795120 None:intergenic
ACAAAGTTGTTGTCACATCC+AGG 0.490168 7_1:-60791067 None:intergenic
TAGCTTTGAATTTGATGGAT+GGG 0.490494 7_1:+60795798 Msa1028150:CDS
GCGGGAGATTACTCGTCTAC+TGG 0.490969 7_1:-60796382 None:intergenic
TTAGGTTTGCTACAACAGTC+AGG 0.492193 7_1:-60792797 None:intergenic
TGCAAGATTTGGACCTACAT+TGG 0.494196 7_1:+60792724 Msa1028150:CDS
TTGCTCAATAACACCCTCTC+TGG 0.497863 7_1:-60793691 None:intergenic
AACACAGAGAAGAAGAAGAT+AGG 0.498115 7_1:-60790977 None:intergenic
ACCTGCTGTCATGCTTCCAC+TGG 0.500327 7_1:+60793358 Msa1028150:CDS
ATGTGAAACAGCACCGAAGA+AGG 0.501888 7_1:-60794675 None:intergenic
ATACTCTCCACGACGTCCAC+AGG 0.502854 7_1:+60793590 Msa1028150:CDS
TCTTGACTGTTAGATGTTGG+AGG 0.506148 7_1:+60796567 Msa1028150:three_prime_UTR
TATGTGAAAGTACCCTTCTT+CGG 0.508554 7_1:+60794662 Msa1028150:CDS
CCATGAGAGTGTGATGATAG+TGG 0.511765 7_1:+60795162 Msa1028150:CDS
AAGAAGATAGGTGTAAAAGA+AGG 0.514055 7_1:-60790965 None:intergenic
CTGATTATAAATAACGCTAA+AGG 0.517532 7_1:+60793066 Msa1028150:CDS
TGGTAGTACAAAGGAAGAAG+AGG 0.519622 7_1:-60790819 None:intergenic
GTCATGCTTCCACTGGATGC+CGG 0.519867 7_1:+60793365 Msa1028150:CDS
TTGTGGACGATGAGTGCCTA+TGG 0.521690 7_1:+60795650 Msa1028150:CDS
CCACTATCATCACACTCTCA+TGG 0.522407 7_1:-60795162 None:intergenic
GGGACTATATACAGCAAAGC+TGG 0.523296 7_1:-60795830 None:intergenic
CCAGTAAGAAGCACAGAGAA+TGG 0.528439 7_1:-60793655 None:intergenic
TCCAACATCTAACAGTCAAG+AGG 0.532187 7_1:-60796565 None:intergenic
GAAAATGCTACTAGAAGCCC+TGG 0.532953 7_1:-60795402 None:intergenic
GCAAATATAGCTGAAGAAGC+TGG 0.537504 7_1:+60793030 Msa1028150:CDS
GTGCCTTGTACAATATCGTT+AGG 0.539714 7_1:-60796509 None:intergenic
TCTGCCTGGACTGCCAGAGA+GGG 0.540666 7_1:+60793678 Msa1028150:CDS
TTCGAGCAGGATACTTCTTG+TGG 0.550885 7_1:+60795633 Msa1028150:CDS
CGTGTATCGTATGCCTGGAT+TGG 0.553817 7_1:+60794758 Msa1028150:CDS
AGTATTGCTCCTAAGAAACC+TGG 0.554160 7_1:+60791049 Msa1028150:CDS
AGCGTTATTTATAATCAGGA+TGG 0.554823 7_1:-60793061 None:intergenic
GAAGAAGAGGAAATCGTGAA+GGG 0.554969 7_1:-60790806 None:intergenic
CAGCCTAACGATATTGTACA+AGG 0.555015 7_1:+60796506 Msa1028150:three_prime_UTR
GTCTGCCTGGACTGCCAGAG+AGG 0.555701 7_1:+60793677 Msa1028150:CDS
ACGCGGTATCTTGAGCAGCA+TGG 0.557275 7_1:-60795325 None:intergenic
TCCTCTTTGATGTGAGGGCA+AGG 0.564220 7_1:-60796352 None:intergenic
ATAGCTTTGAATTTGATGGA+TGG 0.564608 7_1:+60795797 Msa1028150:CDS
CTTCTAAATATAGAGAATGC+TGG 0.565274 7_1:+60793959 Msa1028150:CDS
ATGGTTCATTGATGTTCTGG+TGG 0.565632 7_1:+60794078 Msa1028150:CDS
CAGCGAATGCTATGCAGAAG+GGG 0.567384 7_1:-60794715 None:intergenic
TCCAGTGGAAGCATGACAGC+AGG 0.569868 7_1:-60793359 None:intergenic
GGTGATAAGAGTGGAGAAGA+TGG 0.570626 7_1:+60795297 Msa1028150:CDS
AACCTACAATACTATTCCGC+GGG 0.570740 7_1:-60796400 None:intergenic
CTATAGCATACCTAAACCAT+AGG 0.572085 7_1:-60795666 None:intergenic
TCAATTGATGGTGTGGAAAG+CGG 0.573126 7_1:+60792683 Msa1028150:CDS
ATAGCATTCGCTGTGGTTTG+GGG 0.575530 7_1:+60794725 Msa1028150:CDS
AGCGGCGAGTATGTCGGTGT+TGG 0.576766 7_1:+60792701 Msa1028150:CDS
ACAGCGAATGCTATGCAGAA+GGG 0.578803 7_1:-60794716 None:intergenic
TGATGATCCTCTTTGATGTG+AGG 0.582482 7_1:-60796358 None:intergenic
TATATAGTCCCATTTACACT+TGG 0.584363 7_1:+60795842 Msa1028150:CDS
AAAATGTTCATAGTTTCAGA+TGG 0.586719 7_1:+60794618 Msa1028150:intron
AGATGAAGGTGGTAGTACAA+AGG 0.588109 7_1:-60790828 None:intergenic
AAGGCTTCACCGGCATCCAG+TGG 0.588506 7_1:-60793374 None:intergenic
CGTTTATTCGATCCTTGGGG+TGG 0.589284 7_1:+60795345 Msa1028150:CDS
CAATCCAGGCATACGATACA+CGG 0.590284 7_1:-60794757 None:intergenic
GCGAAGAGGAACCTTCGAGC+AGG 0.593050 7_1:+60795620 Msa1028150:CDS
TATATACAAAACAAGTCCAC+AGG 0.595990 7_1:+60793404 Msa1028150:CDS
TTGAGGTGTGAAAAGAAAAG+GGG 0.596596 7_1:-60790899 None:intergenic
CACAGCGAATGCTATGCAGA+AGG 0.597296 7_1:-60794717 None:intergenic
TTGAATTTGATGGATGGGCA+TGG 0.598006 7_1:+60795803 Msa1028150:CDS
TTGTCATTGGGAAAGAAGAG+AGG 0.601284 7_1:+60796289 Msa1028150:CDS
CCAGAAGATGTCATATAGGA+AGG 0.604622 7_1:-60795116 None:intergenic
CCAACATCTAACAGTCAAGA+GGG 0.606250 7_1:-60796564 None:intergenic
TTGTGAAACTACATTGTCCT+CGG 0.612612 7_1:-60793002 None:intergenic
TGTCCAAATACCAAACCTCA+AGG 0.614521 7_1:+60794953 Msa1028150:CDS
GATGATCCTCTTTGATGTGA+GGG 0.616637 7_1:-60796357 None:intergenic
AAACCTACAATACTATTCCG+CGG 0.619560 7_1:-60796401 None:intergenic
GGTGTGAAAAGAAAAGGGGT+TGG 0.620289 7_1:-60790895 None:intergenic
TGTGAAACAGCACCGAAGAA+GGG 0.620570 7_1:-60794674 None:intergenic
GCTACAACAGTCAGGAGGGT+CGG 0.621755 7_1:-60792789 None:intergenic
AAGAAGAGGAAATCGTGAAG+GGG 0.624384 7_1:-60790805 None:intergenic
GGTATGATTGGTTAGCGAAG+AGG 0.627965 7_1:+60795606 Msa1028150:intron
ACAGTCAGGAGGGTCGGCAA+TGG 0.630961 7_1:-60792783 None:intergenic
GTAGCTCGCGGTGATAAGAG+TGG 0.630975 7_1:+60795288 Msa1028150:CDS
GTTTGCTACAACAGTCAGGA+GGG 0.632295 7_1:-60792793 None:intergenic
GTGGAAAGCGGCGAGTATGT+CGG 0.632476 7_1:+60792695 Msa1028150:CDS
GGAAGAAGAGGAAATCGTGA+AGG 0.633839 7_1:-60790807 None:intergenic
TGATTGTAGATGGAAATTTG+AGG 0.635882 7_1:-60790916 None:intergenic
CCGCGTTTATTCGATCCTTG+GGG 0.643328 7_1:+60795342 Msa1028150:CDS
ACATCGACCTGTGGACGTCG+TGG 0.644315 7_1:-60793597 None:intergenic
ACAAGAAGTATCCTGCTCGA+AGG 0.648586 7_1:-60795631 None:intergenic
TTACAGTGTCATCGGTTTCG+GGG 0.651346 7_1:+60795368 Msa1028150:CDS
AACGAATGAAAGTGCTGCCG+TGG 0.651931 7_1:-60794008 None:intergenic
GGTTTGCTACAACAGTCAGG+AGG 0.652355 7_1:-60792794 None:intergenic
GCCTTGCCCTCACATCAAAG+AGG 0.653911 7_1:+60796351 Msa1028150:CDS
TCAAAGCTATGTATGTGACA+AGG 0.659484 7_1:-60795784 None:intergenic
ACAATGTAGTTTCACAACCA+AGG 0.675341 7_1:+60793008 Msa1028150:CDS
GGGACTGCAAACTTGCCTAG+TGG 0.676172 7_1:+60794455 Msa1028150:intron
AGCGAATGCTATGCAGAAGG+GGG 0.677222 7_1:-60794714 None:intergenic
ACTTCTTTACAGGTAGCTCG+CGG 0.683752 7_1:+60795276 Msa1028150:intron
CTTCTGCATAGCATTCGCTG+TGG 0.687281 7_1:+60794718 Msa1028150:CDS
GCGGTATCTTGAGCAGCATG+GGG 0.687520 7_1:-60795323 None:intergenic
ACTTCTGCAACATCGACCTG+TGG 0.688487 7_1:-60793606 None:intergenic
ATGACACTGTAACCACCCCA+AGG 0.695167 7_1:-60795357 None:intergenic
CCCCAAGGATCGAATAAACG+CGG 0.705852 7_1:-60795342 None:intergenic
AGTAGACGAGTAATCTCCCG+CGG 0.729711 7_1:+60796384 Msa1028150:exon
ACTGTGATAAAAGAGCCACT+AGG 0.735765 7_1:-60794470 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGATATATAGAAATTTA+TGG + chr7_1:60794858-60794877 Msa1028150:intron 10.0%
!! TATATCTTTGTAAAGAAAAA+TGG - chr7_1:60790857-60790876 None:intergenic 15.0%
!!! TTAATAGAATTGATTTCTAT+TGG + chr7_1:60791508-60791527 Msa1028150:intron 15.0%
!! ACTTTCTAATAGTTAATAAA+GGG - chr7_1:60791782-60791801 None:intergenic 15.0%
!! AAAAAAATAAATTACACTAC+AGG - chr7_1:60793136-60793155 None:intergenic 15.0%
!!! AAAATTTAGTATTGGAAAAA+AGG - chr7_1:60793160-60793179 None:intergenic 15.0%
!!! GTTTTGTATATATTTTTTCA+AGG - chr7_1:60793396-60793415 None:intergenic 15.0%
!!! AATGTTATGTATTTTGTTAA+TGG + chr7_1:60795547-60795566 Msa1028150:intron 15.0%
!! TAACAAATCAAAAAAAATAG+CGG + chr7_1:60795948-60795967 Msa1028150:intron 15.0%
!! ATATACCAAAATTAGCATAA+TGG - chr7_1:60791621-60791640 None:intergenic 20.0%
!!! AAAAAAGAGTAAGTTTTAAG+TGG - chr7_1:60791740-60791759 None:intergenic 20.0%
!!! AGTTAATAAAGGGTAATTTT+TGG - chr7_1:60791772-60791791 None:intergenic 20.0%
!! CACTTTCTAATAGTTAATAA+AGG - chr7_1:60791783-60791802 None:intergenic 20.0%
!! TATTAACTATTAGAAAGTGA+TGG + chr7_1:60791784-60791803 Msa1028150:intron 20.0%
!! AAGAATGAGAAAAATTCTTA+AGG + chr7_1:60791819-60791838 Msa1028150:intron 20.0%
!! TATTATTTATAAGCTTGTCA+AGG - chr7_1:60792080-60792099 None:intergenic 20.0%
!! AAAAAAAGAAGTTAATGTTG+AGG + chr7_1:60792412-60792431 Msa1028150:intron 20.0%
!! AATGTATTCAAAGTTTGAAA+TGG + chr7_1:60792440-60792459 Msa1028150:intron 20.0%
!! TACTCATAGAAAATAGAAAT+AGG - chr7_1:60792584-60792603 None:intergenic 20.0%
!!! TATTTTCTATGAGTATTGAT+AGG + chr7_1:60792589-60792608 Msa1028150:intron 20.0%
!! ATAGAACATACTGAAAAATA+AGG + chr7_1:60792845-60792864 Msa1028150:intron 20.0%
!!! AAATTCTAGAGCTTTTAATA+TGG - chr7_1:60792908-60792927 None:intergenic 20.0%
!! ACAAACTGAAAATTTAGTAT+TGG - chr7_1:60793168-60793187 None:intergenic 20.0%
!!! AATACTAAATTTTCAGTTTG+TGG + chr7_1:60793167-60793186 Msa1028150:intron 20.0%
!!! ACTTGTTTTTCTAACAAATT+AGG - chr7_1:60793227-60793246 None:intergenic 20.0%
!!! ATTTTATATCCTTATTTTGC+AGG + chr7_1:60793287-60793306 Msa1028150:intron 20.0%
!! GAAAGAAAACAAACTATTAA+AGG - chr7_1:60793827-60793846 None:intergenic 20.0%
!!! ATTATTTTGGTCATTTATGA+AGG + chr7_1:60793855-60793874 Msa1028150:intron 20.0%
!! TTTATGCTTTACAAACTAAT+GGG + chr7_1:60794052-60794071 Msa1028150:CDS 20.0%
!!! ATATTTTGTAACTTCAAATC+CGG - chr7_1:60794278-60794297 None:intergenic 20.0%
!!! ATAATTTAAAAGTGTCTCAA+AGG + chr7_1:60794304-60794323 Msa1028150:intron 20.0%
!! ATTTATTATTCCAAACACTT+TGG + chr7_1:60794366-60794385 Msa1028150:intron 20.0%
!!! TGTCAATTCAATATCATTTT+GGG - chr7_1:60794596-60794615 None:intergenic 20.0%
!!! ATGTCAATTCAATATCATTT+TGG - chr7_1:60794597-60794616 None:intergenic 20.0%
!!! ATTTTTAATCTTCTCTTTTC+AGG + chr7_1:60794899-60794918 Msa1028150:intron 20.0%
!!! TTTTTAATCTTCTCTTTTCA+GGG + chr7_1:60794900-60794919 Msa1028150:intron 20.0%
!!! AGTGTCTTTATTTGTAAAAT+AGG - chr7_1:60795048-60795067 None:intergenic 20.0%
!!! TTTTACAAATAAAGACACTA+AGG + chr7_1:60795049-60795068 Msa1028150:intron 20.0%
!! AAATCAAACTTTGTATAGAA+TGG - chr7_1:60795219-60795238 None:intergenic 20.0%
!!! TAATTTTCCTTGATTATGTT+TGG + chr7_1:60795717-60795736 Msa1028150:intron 20.0%
!!! TTTTTGAGAAAATTGTTCAT+AGG + chr7_1:60796632-60796651 Msa1028150:three_prime_UTR 20.0%
! AAGAAAAATGGAAAAGATGA+AGG - chr7_1:60790845-60790864 None:intergenic 25.0%
!!! TTTTGATTTGATTTGATGCT+AGG + chr7_1:60791198-60791217 Msa1028150:intron 25.0%
!!! TATTTTTGTGGAAAATTGAG+TGG + chr7_1:60791267-60791286 Msa1028150:intron 25.0%
!! ATTTTTGTGGAAAATTGAGT+GGG + chr7_1:60791268-60791287 Msa1028150:intron 25.0%
! ATACCAGAATGATTTGATTA+AGG + chr7_1:60791479-60791498 Msa1028150:intron 25.0%
!!! TTTGTTTGTTTTTATTTCCC+TGG + chr7_1:60791562-60791581 Msa1028150:intron 25.0%
!! AGATTCCATTATGCTAATTT+TGG + chr7_1:60791613-60791632 Msa1028150:intron 25.0%
! GATTGTTTGGATAAACTAAA+CGG - chr7_1:60791664-60791683 None:intergenic 25.0%
! AAAAATTCTTAAGGTCTGTT+TGG + chr7_1:60791828-60791847 Msa1028150:intron 25.0%
!! TACAATTTTCGTAATCCAAA+CGG - chr7_1:60792029-60792048 None:intergenic 25.0%
! CAAAAATAAGTCAATCCAAA+CGG + chr7_1:60792140-60792159 Msa1028150:intron 25.0%
! TCTTTGGATAAACAACTTAA+GGG - chr7_1:60792167-60792186 None:intergenic 25.0%
!!! TCTTGATTAGTCTTCATTAA+TGG + chr7_1:60792376-60792395 Msa1028150:intron 25.0%
!!! TCTTCATTAATGGTTTGTTT+TGG + chr7_1:60792386-60792405 Msa1028150:intron 25.0%
! AAAGTTCCAATTTCAATTGA+TGG + chr7_1:60792671-60792690 Msa1028150:CDS 25.0%
!!! TTTTCTTTTGATTCCAATGT+AGG - chr7_1:60792740-60792759 None:intergenic 25.0%
! AACTAGAATACCTTATTCTT+AGG - chr7_1:60792818-60792837 None:intergenic 25.0%
! CTTTAGCGTTATTTATAATC+AGG - chr7_1:60793068-60793087 None:intergenic 25.0%
! CTGATTATAAATAACGCTAA+AGG + chr7_1:60793066-60793085 Msa1028150:CDS 25.0%
!! AATTTTCAGTTTGTGGTTAT+AGG + chr7_1:60793174-60793193 Msa1028150:intron 25.0%
! AATGAAACCGATATTGATAT+TGG + chr7_1:60793332-60793351 Msa1028150:CDS 25.0%
! AGGTATTCCAATATCAATAT+CGG - chr7_1:60793342-60793361 None:intergenic 25.0%
!!! AATTTTTTTAAATCTCCCTG+TGG - chr7_1:60793490-60793509 None:intergenic 25.0%
!!! ATGTTGCAGAAGTATTTTTA+TGG + chr7_1:60793616-60793635 Msa1028150:CDS 25.0%
!!! AGAAGTATTTTTATGGCTTA+TGG + chr7_1:60793623-60793642 Msa1028150:CDS 25.0%
! CGAATAAATTTGACATGAAA+AGG - chr7_1:60793743-60793762 None:intergenic 25.0%
!!! CTTTCTGAGATGAATTATTT+TGG + chr7_1:60793842-60793861 Msa1028150:intron 25.0%
! TATAGATAATTTACCATTGC+AGG + chr7_1:60793922-60793941 Msa1028150:intron 25.0%
! GTTTATGCTTTACAAACTAA+TGG + chr7_1:60794051-60794070 Msa1028150:CDS 25.0%
! AAAATGTTCATAGTTTCAGA+TGG + chr7_1:60794618-60794637 Msa1028150:intron 25.0%
!!! CTTCATTTTTTTACTCTTTC+TGG + chr7_1:60794991-60795010 Msa1028150:intron 25.0%
!! AGGTATACATTCTTTTTACA+AGG + chr7_1:60795069-60795088 Msa1028150:intron 25.0%
!! ATACATTCTTTTTACAAGGT+TGG + chr7_1:60795073-60795092 Msa1028150:intron 25.0%
! TTTGTATAGAATGGTAGTAA+CGG - chr7_1:60795210-60795229 None:intergenic 25.0%
!!! AAAGTGTAGAGTTTTTTTAG+GGG - chr7_1:60795255-60795274 None:intergenic 25.0%
!!! GAAAGTGTAGAGTTTTTTTA+GGG - chr7_1:60795256-60795275 None:intergenic 25.0%
!!! TGAAAGTGTAGAGTTTTTTT+AGG - chr7_1:60795257-60795276 None:intergenic 25.0%
! GTTAAATTGAAAATCTCACA+TGG + chr7_1:60795431-60795450 Msa1028150:intron 25.0%
! ATCCTTGTAACAAAAAAGTT+TGG + chr7_1:60795513-60795532 Msa1028150:intron 25.0%
!!! TTCCAAACTTTTTTGTTACA+AGG - chr7_1:60795518-60795537 None:intergenic 25.0%
! ATATACTTTACAGGTATGAT+TGG + chr7_1:60795594-60795613 Msa1028150:intron 25.0%
!! ATGCTATAGTTTTCAATGAT+AGG + chr7_1:60795680-60795699 Msa1028150:intron 25.0%
!!! ATACATAGCTTTGAATTTGA+TGG + chr7_1:60795793-60795812 Msa1028150:CDS 25.0%
! TTTACTAACCAAGTGTAAAT+GGG - chr7_1:60795853-60795872 None:intergenic 25.0%
!! TTTTACTAACCAAGTGTAAA+TGG - chr7_1:60795854-60795873 None:intergenic 25.0%
!!! TTTGATTTGTTATTGACTTC+TGG - chr7_1:60795940-60795959 None:intergenic 25.0%
! TATCGTTAAATAGATAACAC+TGG - chr7_1:60795994-60796013 None:intergenic 25.0%
! AGAAAACATCATAAGAAACA+TGG - chr7_1:60796151-60796170 None:intergenic 25.0%
! ACCTAATAATATGCTTCATA+TGG - chr7_1:60796211-60796230 None:intergenic 25.0%
!!! TATTGTAGGTTTTAGTTTAC+AGG + chr7_1:60796412-60796431 Msa1028150:three_prime_UTR 25.0%
AAAAATGGAAAAGATGAAGG+TGG - chr7_1:60790842-60790861 None:intergenic 30.0%
! TTTGAGGTGTGAAAAGAAAA+GGG - chr7_1:60790903-60790922 None:intergenic 30.0%
! ATTTGAGGTGTGAAAAGAAA+AGG - chr7_1:60790904-60790923 None:intergenic 30.0%
TGATTGTAGATGGAAATTTG+AGG - chr7_1:60790919-60790938 None:intergenic 30.0%
AAGAAGATAGGTGTAAAAGA+AGG - chr7_1:60790968-60790987 None:intergenic 30.0%
!!! TGCTTTGAAATTTTCTTGCT+TGG + chr7_1:60791128-60791147 Msa1028150:intron 30.0%
AAGCCTTAATCAAATCATTC+TGG - chr7_1:60791485-60791504 None:intergenic 30.0%
TTTACCTATTGCAAAAACCA+GGG - chr7_1:60791582-60791601 None:intergenic 30.0%
! TTTTACCTATTGCAAAAACC+AGG - chr7_1:60791583-60791602 None:intergenic 30.0%
TGACAACTTTCATGATTGTT+TGG - chr7_1:60791677-60791696 None:intergenic 30.0%
TAACTATTAGAAAGTGATGG+TGG + chr7_1:60791787-60791806 Msa1028150:intron 30.0%
AACTATTAGAAAGTGATGGT+GGG + chr7_1:60791788-60791807 Msa1028150:intron 30.0%
!! CTTATTTCTATAAGCTCTCT+AGG + chr7_1:60791898-60791917 Msa1028150:intron 30.0%
CTTGTTCTATAAGCGTTAAA+GGG + chr7_1:60792002-60792021 Msa1028150:intron 30.0%
! ACAATTTTCGTAATCCAAAC+GGG - chr7_1:60792028-60792047 None:intergenic 30.0%
GTCTTTGGATAAACAACTTA+AGG - chr7_1:60792168-60792187 None:intergenic 30.0%
GATTTCAGCAAACAACTATA+TGG + chr7_1:60792558-60792577 Msa1028150:intron 30.0%
!!! GAAGTATGTCTGAGTTTTTT+CGG + chr7_1:60792617-60792636 Msa1028150:intron 30.0%
TAACCTATCGAAAGAAAAAC+CGG - chr7_1:60792652-60792671 None:intergenic 30.0%
TTGTAGCAAACCTAAGAATA+AGG + chr7_1:60792805-60792824 Msa1028150:CDS 30.0%
! CTTGAAATTTTGTTAGCTCA+CGG + chr7_1:60792960-60792979 Msa1028150:intron 30.0%
! TTGAAATTTTGTTAGCTCAC+GGG + chr7_1:60792961-60792980 Msa1028150:intron 30.0%
AGCGTTATTTATAATCAGGA+TGG - chr7_1:60793064-60793083 None:intergenic 30.0%
TTGAAAAGTCCTGCAAAATA+AGG - chr7_1:60793299-60793318 None:intergenic 30.0%
!!! ATATTTTTTCAAGGCTTCAC+CGG - chr7_1:60793387-60793406 None:intergenic 30.0%
TATATACAAAACAAGTCCAC+AGG + chr7_1:60793404-60793423 Msa1028150:CDS 30.0%
GTAATTAATTATGCTTCCCT+TGG + chr7_1:60793464-60793483 Msa1028150:intron 30.0%
!! TTACATTTTGATACCTAACC+TGG + chr7_1:60793513-60793532 Msa1028150:intron 30.0%
ATTTGACATGAAAAGGAACT+AGG - chr7_1:60793736-60793755 None:intergenic 30.0%
CTTCTAAATATAGAGAATGC+TGG + chr7_1:60793959-60793978 Msa1028150:CDS 30.0%
!!! TTTTTTGGAAATAAGCACCA+CGG + chr7_1:60793991-60794010 Msa1028150:CDS 30.0%
TTTACAAACTAATGGGAAGA+TGG + chr7_1:60794059-60794078 Msa1028150:CDS 30.0%
!! AGGTGAGTTATTATTTTTCC+AGG + chr7_1:60794125-60794144 Msa1028150:intron 30.0%
!! AGTTATTATTTTTCCAGGCT+TGG + chr7_1:60794130-60794149 Msa1028150:intron 30.0%
TTTATTCTTTGCATGCTTTC+AGG + chr7_1:60794434-60794453 Msa1028150:intron 30.0%
TTATTCTTTGCATGCTTTCA+GGG + chr7_1:60794435-60794454 Msa1028150:intron 30.0%
CTATACAATGTCAACTTTAC+AGG + chr7_1:60794500-60794519 Msa1028150:intron 30.0%
ACATGAACCAAAGAAACAAT+GGG - chr7_1:60794819-60794838 None:intergenic 30.0%
AACATGAACCAAAGAAACAA+TGG - chr7_1:60794820-60794839 None:intergenic 30.0%
!! CTTTGGTTCATGTTTTATAC+TGG + chr7_1:60794826-60794845 Msa1028150:intron 30.0%
TTTGAATAATCATCACCTTG+AGG - chr7_1:60794971-60794990 None:intergenic 30.0%
!!! TTTTTTACTCTTTCTGGCTA+TGG + chr7_1:60794997-60795016 Msa1028150:intron 30.0%
TTGTATAGAATGGTAGTAAC+GGG - chr7_1:60795209-60795228 None:intergenic 30.0%
! TTCTAGTAGCATTTTCGTTA+AGG + chr7_1:60795409-60795428 Msa1028150:CDS 30.0%
TAGTTAACATTAGTAGTCCA+AGG - chr7_1:60795467-60795486 None:intergenic 30.0%
! GTAACAAAAAAGTTTGGAAC+AGG + chr7_1:60795519-60795538 Msa1028150:intron 30.0%
ACTCTGTTGATATACTTTAC+AGG + chr7_1:60795585-60795604 Msa1028150:intron 30.0%
CTGTAATCCAAACATAATCA+AGG - chr7_1:60795727-60795746 None:intergenic 30.0%
!! ATAGCTTTGAATTTGATGGA+TGG + chr7_1:60795797-60795816 Msa1028150:CDS 30.0%
!! TAGCTTTGAATTTGATGGAT+GGG + chr7_1:60795798-60795817 Msa1028150:CDS 30.0%
TATATAGTCCCATTTACACT+TGG + chr7_1:60795842-60795861 Msa1028150:CDS 30.0%
AAGAAACATGGATAAGACTT+GGG - chr7_1:60796139-60796158 None:intergenic 30.0%
TAAGAAACATGGATAAGACT+TGG - chr7_1:60796140-60796159 None:intergenic 30.0%
GCCATATGAAGCATATTATT+AGG + chr7_1:60796207-60796226 Msa1028150:intron 30.0%
AAACATTCTTGTGTATATGC+AGG + chr7_1:60796259-60796278 Msa1028150:intron 30.0%
! AACTTGAGATTTTATGGACA+AGG + chr7_1:60796314-60796333 Msa1028150:CDS 30.0%
! ACTTGAGATTTTATGGACAA+GGG + chr7_1:60796315-60796334 Msa1028150:CDS 30.0%
GGAGACTTATAACAAATCAT+AGG + chr7_1:60796433-60796452 Msa1028150:three_prime_UTR 30.0%
TTGAGGTGTGAAAAGAAAAG+GGG - chr7_1:60790902-60790921 None:intergenic 35.0%
GTGAGAATCTTGATTGTAGA+TGG - chr7_1:60790929-60790948 None:intergenic 35.0%
AACACAGAGAAGAAGAAGAT+AGG - chr7_1:60790980-60790999 None:intergenic 35.0%
! CTTCTTACTTTCTCTTTTGC+TGG + chr7_1:60791007-60791026 Msa1028150:CDS 35.0%
ATGTGACAACAACTTTGTTC+TGG + chr7_1:60791072-60791091 Msa1028150:CDS 35.0%
GCTTGAAATGCTGTTCTTAT+TGG + chr7_1:60791156-60791175 Msa1028150:intron 35.0%
!!! GAAGCTTGTTTTTTGAGCAT+TGG + chr7_1:60791356-60791375 Msa1028150:intron 35.0%
!!! TTTTTTGAGCATTGGATGCT+TGG + chr7_1:60791364-60791383 Msa1028150:intron 35.0%
!! ATTTCCCTGGTTTTTGCAAT+AGG + chr7_1:60791575-60791594 Msa1028150:intron 35.0%
GACTTGATTCTATCTTGTCA+TGG + chr7_1:60791944-60791963 Msa1028150:intron 35.0%
GCTTGTTCTATAAGCGTTAA+AGG + chr7_1:60792001-60792020 Msa1028150:intron 35.0%
AAGTCAGTTACTCTAGGTTA+AGG - chr7_1:60792193-60792212 None:intergenic 35.0%
ACAGTTAAGTCAGTTACTCT+AGG - chr7_1:60792199-60792218 None:intergenic 35.0%
TCTCTTGCAGCAATGTAAAA+AGG + chr7_1:60792253-60792272 Msa1028150:intron 35.0%
AAGACTAATCAAGAAGACAG+AGG - chr7_1:60792370-60792389 None:intergenic 35.0%
! AGTTTGAAATGGTGAGAACA+AGG + chr7_1:60792451-60792470 Msa1028150:intron 35.0%
!! TCCAATTTCAATTGATGGTG+TGG + chr7_1:60792676-60792695 Msa1028150:CDS 35.0%
TCCACACCATCAATTGAAAT+TGG - chr7_1:60792680-60792699 None:intergenic 35.0%
CGTGAGCTAACAAAATTTCA+AGG - chr7_1:60792962-60792981 None:intergenic 35.0%
TTGTGAAACTACATTGTCCT+CGG - chr7_1:60793005-60793024 None:intergenic 35.0%
ACAATGTAGTTTCACAACCA+AGG + chr7_1:60793008-60793027 Msa1028150:CDS 35.0%
TTCTTCAGCTATATTTGCCT+TGG - chr7_1:60793028-60793047 None:intergenic 35.0%
CAGTTTGTGGTTATAGGTTT+CGG + chr7_1:60793180-60793199 Msa1028150:intron 35.0%
!! TTTTGCAGGACTTTTCAAGA+TGG + chr7_1:60793301-60793320 Msa1028150:intron 35.0%
ATGTTTCACTTCTTGTGTGA+AGG + chr7_1:60793428-60793447 Msa1028150:intron 35.0%
AACATGTAAGACACAAAACC+AGG - chr7_1:60793534-60793553 None:intergenic 35.0%
! TTTTTATGGCTTATGGCTGT+TGG + chr7_1:60793630-60793649 Msa1028150:CDS 35.0%
TGAGCAAGAGAAGCTATTAA+AGG + chr7_1:60793707-60793726 Msa1028150:CDS 35.0%
TTAAAGGAATCTTCTGTGAG+AGG - chr7_1:60793811-60793830 None:intergenic 35.0%
! GCTTATTTCCAAAAAAGCAC+TGG - chr7_1:60793987-60794006 None:intergenic 35.0%
AAGATGGTTCATTGATGTTC+TGG + chr7_1:60794075-60794094 Msa1028150:CDS 35.0%
TCTTGACATTATGTTAGAGC+AGG + chr7_1:60794197-60794216 Msa1028150:intron 35.0%
! AACGCTAGGATACCAAATTT+TGG - chr7_1:60794228-60794247 None:intergenic 35.0%
! GACTTGAAAACCAAAGTGTT+TGG - chr7_1:60794379-60794398 None:intergenic 35.0%
!!! ACACTTTGGTTTTCAAGTCA+TGG + chr7_1:60794380-60794399 Msa1028150:intron 35.0%
!!! CACTTTGGTTTTCAAGTCAT+GGG + chr7_1:60794381-60794400 Msa1028150:intron 35.0%
!! TATGTGAAAGTACCCTTCTT+CGG + chr7_1:60794662-60794681 Msa1028150:CDS 35.0%
AAGAATATCTTGACCAATCC+AGG - chr7_1:60794774-60794793 None:intergenic 35.0%
! TTGCTTTCCCATTGTTTCTT+TGG + chr7_1:60794809-60794828 Msa1028150:intron 35.0%
! GGGTATCGCTTTGATAATTA+CGG + chr7_1:60794920-60794939 Msa1028150:intron 35.0%
ATAATCATCACCTTGAGGTT+TGG - chr7_1:60794966-60794985 None:intergenic 35.0%
CTTCCTATATGACATCTTCT+GGG + chr7_1:60795117-60795136 Msa1028150:CDS 35.0%
CTACACTTTCACTTCTTTAC+AGG + chr7_1:60795266-60795285 Msa1028150:intron 35.0%
CTATAGCATACCTAAACCAT+AGG - chr7_1:60795669-60795688 None:intergenic 35.0%
TCAAAGCTATGTATGTGACA+AGG - chr7_1:60795787-60795806 None:intergenic 35.0%
AATAGATAACACTGGTGTAG+TGG - chr7_1:60795986-60796005 None:intergenic 35.0%
!!! GTTTAGTGGTTTTAGTGTAG+CGG - chr7_1:60796065-60796084 None:intergenic 35.0%
TATGCTTCATATGGCATAGT+GGG - chr7_1:60796202-60796221 None:intergenic 35.0%
ATATGCTTCATATGGCATAG+TGG - chr7_1:60796203-60796222 None:intergenic 35.0%
CTTCTTTCCCAATGACAAAA+AGG - chr7_1:60796287-60796306 None:intergenic 35.0%
! CTTGAGATTTTATGGACAAG+GGG + chr7_1:60796316-60796335 Msa1028150:CDS 35.0%
! TTGAGATTTTATGGACAAGG+GGG + chr7_1:60796317-60796336 Msa1028150:CDS 35.0%
AAACCTACAATACTATTCCG+CGG - chr7_1:60796404-60796423 None:intergenic 35.0%
CCAAAGTACAAACAGATTCA+TGG - chr7_1:60796595-60796614 None:intergenic 35.0%
CCATGAATCTGTTTGTACTT+TGG + chr7_1:60796592-60796611 Msa1028150:three_prime_UTR 35.0%
AAGAAGAGGAAATCGTGAAG+GGG - chr7_1:60790808-60790827 None:intergenic 40.0%
GAAGAAGAGGAAATCGTGAA+GGG - chr7_1:60790809-60790828 None:intergenic 40.0%
TGGTAGTACAAAGGAAGAAG+AGG - chr7_1:60790822-60790841 None:intergenic 40.0%
AGATGAAGGTGGTAGTACAA+AGG - chr7_1:60790831-60790850 None:intergenic 40.0%
CTTCTTCTTCTCTGTGTTCA+TGG + chr7_1:60790982-60791001 Msa1028150:CDS 40.0%
AGTATTGCTCCTAAGAAACC+TGG + chr7_1:60791049-60791068 Msa1028150:CDS 40.0%
TTGTCACATCCAGGTTTCTT+AGG - chr7_1:60791061-60791080 None:intergenic 40.0%
ACAAAGTTGTTGTCACATCC+AGG - chr7_1:60791070-60791089 None:intergenic 40.0%
!! TCTCAACTGTAGCTGTTTTC+TGG + chr7_1:60791711-60791730 Msa1028150:intron 40.0%
!! GGTCTGTTTGGATTAGCTTA+TGG + chr7_1:60791840-60791859 Msa1028150:intron 40.0%
AAACAACTTAAGGGTCCGTT+TGG - chr7_1:60792158-60792177 None:intergenic 40.0%
CTCTAGGTTAAGGTTGTCTT+TGG - chr7_1:60792183-60792202 None:intergenic 40.0%
AAATGGTGAGAACAAGGTGA+TGG + chr7_1:60792457-60792476 Msa1028150:intron 40.0%
TCTCTTAGCTTATGTCTCTC+AGG + chr7_1:60792536-60792555 Msa1028150:intron 40.0%
!! CTATGAGTATTGATAGGTCG+TGG + chr7_1:60792595-60792614 Msa1028150:intron 40.0%
!!! GTTTTTTCGGCAGATTTGAC+CGG + chr7_1:60792630-60792649 Msa1028150:intron 40.0%
!! TGACCGGTTTTTCTTTCGAT+AGG + chr7_1:60792646-60792665 Msa1028150:intron 40.0%
!! TCAATTGATGGTGTGGAAAG+CGG + chr7_1:60792683-60792702 Msa1028150:CDS 40.0%
TGCAAGATTTGGACCTACAT+TGG + chr7_1:60792724-60792743 Msa1028150:CDS 40.0%
!! TTAGGTTTGCTACAACAGTC+AGG - chr7_1:60792800-60792819 None:intergenic 40.0%
GCAAATATAGCTGAAGAAGC+TGG + chr7_1:60793030-60793049 Msa1028150:CDS 40.0%
CAAGAAGTGAAACATACCTG+TGG - chr7_1:60793423-60793442 None:intergenic 40.0%
GTAAGACACAAAACCAGGTT+AGG - chr7_1:60793529-60793548 None:intergenic 40.0%
TCATCTGAATCATCCTGCAA+TGG - chr7_1:60793938-60793957 None:intergenic 40.0%
ATGGTTCATTGATGTTCTGG+TGG + chr7_1:60794078-60794097 Msa1028150:CDS 40.0%
!! CTGGTGGTTCTGTTTTGTAT+TGG + chr7_1:60794094-60794113 Msa1028150:CDS 40.0%
!! GTGGTTCTGTTTTGTATTGG+TGG + chr7_1:60794097-60794116 Msa1028150:CDS 40.0%
!!! GTTTTGTATTGGTGGTGTTG+AGG + chr7_1:60794105-60794124 Msa1028150:CDS 40.0%
TAATCATCAAGAACCAAGCC+TGG - chr7_1:60794146-60794165 None:intergenic 40.0%
AACTTCAAATCCGGACAGAA+AGG - chr7_1:60794269-60794288 None:intergenic 40.0%
ACTGTGATAAAAGAGCCACT+AGG - chr7_1:60794473-60794492 None:intergenic 40.0%
TGTCCAAATACCAAACCTCA+AGG + chr7_1:60794953-60794972 Msa1028150:CDS 40.0%
! TCACCTTGAGGTTTGGTATT+TGG - chr7_1:60794959-60794978 None:intergenic 40.0%
!! ACTCTTTCTGGCTATGGATA+TGG + chr7_1:60795003-60795022 Msa1028150:intron 40.0%
CCAGAAGATGTCATATAGGA+AGG - chr7_1:60795119-60795138 None:intergenic 40.0%
CCTTCCTATATGACATCTTC+TGG + chr7_1:60795116-60795135 Msa1028150:CDS 40.0%
ACACCCAGAAGATGTCATAT+AGG - chr7_1:60795123-60795142 None:intergenic 40.0%
! TTCGGGGACATAATTTTACC+AGG + chr7_1:60795384-60795403 Msa1028150:CDS 40.0%
! TCGGGGACATAATTTTACCA+GGG + chr7_1:60795385-60795404 Msa1028150:CDS 40.0%
CACATGGATCACTTATTCCT+TGG + chr7_1:60795447-60795466 Msa1028150:intron 40.0%
! TTGAATTTGATGGATGGGCA+TGG + chr7_1:60795803-60795822 Msa1028150:CDS 40.0%
! CTTTTTGCGTAGTCAAACAG+CGG - chr7_1:60796099-60796118 None:intergenic 40.0%
GACTTGGGATAAGTTTCACA+AGG - chr7_1:60796124-60796143 None:intergenic 40.0%
! TGCAGGAACCTTTTTGTCAT+TGG + chr7_1:60796276-60796295 Msa1028150:intron 40.0%
! GCAGGAACCTTTTTGTCATT+GGG + chr7_1:60796277-60796296 Msa1028150:intron 40.0%
TTGTCATTGGGAAAGAAGAG+AGG + chr7_1:60796289-60796308 Msa1028150:CDS 40.0%
! GAGGCGAACTTGAGATTTTA+TGG + chr7_1:60796308-60796327 Msa1028150:CDS 40.0%
GATGATCCTCTTTGATGTGA+GGG - chr7_1:60796360-60796379 None:intergenic 40.0%
TGATGATCCTCTTTGATGTG+AGG - chr7_1:60796361-60796380 None:intergenic 40.0%
AACCTACAATACTATTCCGC+GGG - chr7_1:60796403-60796422 None:intergenic 40.0%
CAGCCTAACGATATTGTACA+AGG + chr7_1:60796506-60796525 Msa1028150:three_prime_UTR 40.0%
GTGCCTTGTACAATATCGTT+AGG - chr7_1:60796512-60796531 None:intergenic 40.0%
CCAACATCTAACAGTCAAGA+GGG - chr7_1:60796567-60796586 None:intergenic 40.0%
TCCAACATCTAACAGTCAAG+AGG - chr7_1:60796568-60796587 None:intergenic 40.0%
TCTTGACTGTTAGATGTTGG+AGG + chr7_1:60796567-60796586 Msa1028150:three_prime_UTR 40.0%
GGAAGAAGAGGAAATCGTGA+AGG - chr7_1:60790810-60790829 None:intergenic 45.0%
GGTGTGAAAAGAAAAGGGGT+TGG - chr7_1:60790898-60790917 None:intergenic 45.0%
GTGCAGACACAGAATACACT+AGG + chr7_1:60792306-60792325 Msa1028150:intron 45.0%
! GTTTGCTACAACAGTCAGGA+GGG - chr7_1:60792796-60792815 None:intergenic 45.0%
TTAAATCTCCCTGTGGCCAA+GGG - chr7_1:60793483-60793502 None:intergenic 45.0%
TTTAAATCTCCCTGTGGCCA+AGG - chr7_1:60793484-60793503 None:intergenic 45.0%
! CCAGTAAGAAGCACAGAGAA+TGG - chr7_1:60793658-60793677 None:intergenic 45.0%
CCATTCTCTGTGCTTCTTAC+TGG + chr7_1:60793655-60793674 Msa1028150:CDS 45.0%
TTGCTCAATAACACCCTCTC+TGG - chr7_1:60793694-60793713 None:intergenic 45.0%
!!! TGCTGGTTCCAGTGCTTTTT+TGG + chr7_1:60793976-60793995 Msa1028150:CDS 45.0%
GAGCAGGCTACACCAAAATT+TGG + chr7_1:60794213-60794232 Msa1028150:intron 45.0%
TTGGTATCCTAGCGTTCAGA+CGG + chr7_1:60794232-60794251 Msa1028150:intron 45.0%
CACATTAGTGCCTTTCTGTC+CGG + chr7_1:60794256-60794275 Msa1028150:intron 45.0%
! TGTGAAACAGCACCGAAGAA+GGG - chr7_1:60794677-60794696 None:intergenic 45.0%
! ATGTGAAACAGCACCGAAGA+AGG - chr7_1:60794678-60794697 None:intergenic 45.0%
ACAGCGAATGCTATGCAGAA+GGG - chr7_1:60794719-60794738 None:intergenic 45.0%
CATAGCATTCGCTGTGGTTT+GGG + chr7_1:60794724-60794743 Msa1028150:CDS 45.0%
ATAGCATTCGCTGTGGTTTG+GGG + chr7_1:60794725-60794744 Msa1028150:CDS 45.0%
CAATCCAGGCATACGATACA+CGG - chr7_1:60794760-60794779 None:intergenic 45.0%
CCACTATCATCACACTCTCA+TGG - chr7_1:60795165-60795184 None:intergenic 45.0%
! CCATGAGAGTGTGATGATAG+TGG + chr7_1:60795162-60795181 Msa1028150:CDS 45.0%
ACTTCTTTACAGGTAGCTCG+CGG + chr7_1:60795276-60795295 Msa1028150:intron 45.0%
GGTGATAAGAGTGGAGAAGA+TGG + chr7_1:60795297-60795316 Msa1028150:CDS 45.0%
TACCGCGTTTATTCGATCCT+TGG + chr7_1:60795340-60795359 Msa1028150:CDS 45.0%
ACCGCGTTTATTCGATCCTT+GGG + chr7_1:60795341-60795360 Msa1028150:CDS 45.0%
!! GGTTACAGTGTCATCGGTTT+CGG + chr7_1:60795366-60795385 Msa1028150:CDS 45.0%
!! GTTACAGTGTCATCGGTTTC+GGG + chr7_1:60795367-60795386 Msa1028150:CDS 45.0%
!! TTACAGTGTCATCGGTTTCG+GGG + chr7_1:60795368-60795387 Msa1028150:CDS 45.0%
GAAAATGCTACTAGAAGCCC+TGG - chr7_1:60795405-60795424 None:intergenic 45.0%
! GGTATGATTGGTTAGCGAAG+AGG + chr7_1:60795606-60795625 Msa1028150:intron 45.0%
!! ACAAGAAGTATCCTGCTCGA+AGG - chr7_1:60795634-60795653 None:intergenic 45.0%
TTCGAGCAGGATACTTCTTG+TGG + chr7_1:60795633-60795652 Msa1028150:CDS 45.0%
ACGATGAGTGCCTATGGTTT+AGG + chr7_1:60795656-60795675 Msa1028150:CDS 45.0%
GGGACTATATACAGCAAAGC+TGG - chr7_1:60795833-60795852 None:intergenic 45.0%
!! ATGTGAGGGCAAGGCATTTT+TGG - chr7_1:60796346-60796365 None:intergenic 45.0%
CCCTCTTGACTGTTAGATGT+TGG + chr7_1:60796564-60796583 Msa1028150:three_prime_UTR 45.0%
!!! AATTTATTTTTATATTTTTG+TGG + chr7_1:60791255-60791274 Msa1028150:intron 5.0%
!!! TTTATTAATATTTTGTAATA+TGG + chr7_1:60792932-60792951 Msa1028150:intron 5.0%
TAAGCGTTAAAGGGCCCGTT+TGG + chr7_1:60792011-60792030 Msa1028150:intron 50.0%
!! GTCGGTGTTGGTGCAAGATT+TGG + chr7_1:60792713-60792732 Msa1028150:CDS 50.0%
CGGCAATGGCAACTCTAGTA+TGG - chr7_1:60792772-60792791 None:intergenic 50.0%
!! GGTTTGCTACAACAGTCAGG+AGG - chr7_1:60792797-60792816 None:intergenic 50.0%
!! GAGATCATTTTGGTGCACCG+AGG + chr7_1:60792985-60793004 Msa1028150:CDS 50.0%
ATTATGCTTCCCTTGGCCAC+AGG + chr7_1:60793471-60793490 Msa1028150:intron 50.0%
TTATGCTTCCCTTGGCCACA+GGG + chr7_1:60793472-60793491 Msa1028150:intron 50.0%
ACTTCTGCAACATCGACCTG+TGG - chr7_1:60793609-60793628 None:intergenic 50.0%
TCTTCTGTGAGAGGACTGTG+AGG - chr7_1:60793802-60793821 None:intergenic 50.0%
!! AACGAATGAAAGTGCTGCCG+TGG - chr7_1:60794011-60794030 None:intergenic 50.0%
AATGTGTCCGTCTGAACGCT+AGG - chr7_1:60794242-60794261 None:intergenic 50.0%
AGCGAATGCTATGCAGAAGG+GGG - chr7_1:60794717-60794736 None:intergenic 50.0%
CAGCGAATGCTATGCAGAAG+GGG - chr7_1:60794718-60794737 None:intergenic 50.0%
CACAGCGAATGCTATGCAGA+AGG - chr7_1:60794720-60794739 None:intergenic 50.0%
CTTCTGCATAGCATTCGCTG+TGG + chr7_1:60794718-60794737 Msa1028150:CDS 50.0%
GCATAGCATTCGCTGTGGTT+TGG + chr7_1:60794723-60794742 Msa1028150:CDS 50.0%
CGTGTATCGTATGCCTGGAT+TGG + chr7_1:60794758-60794777 Msa1028150:CDS 50.0%
CCCCAAGGATCGAATAAACG+CGG - chr7_1:60795345-60795364 None:intergenic 50.0%
CCGCGTTTATTCGATCCTTG+GGG + chr7_1:60795342-60795361 Msa1028150:CDS 50.0%
CGTTTATTCGATCCTTGGGG+TGG + chr7_1:60795345-60795364 Msa1028150:CDS 50.0%
ATGACACTGTAACCACCCCA+AGG - chr7_1:60795360-60795379 None:intergenic 50.0%
TGGGGTGGTTACAGTGTCAT+CGG + chr7_1:60795360-60795379 Msa1028150:CDS 50.0%
TTGTGGACGATGAGTGCCTA+TGG + chr7_1:60795650-60795669 Msa1028150:CDS 50.0%
CGGCTATCACAGTGGTTTAG+TGG - chr7_1:60796079-60796098 None:intergenic 50.0%
TCAAACAGCGGCTATCACAG+TGG - chr7_1:60796087-60796106 None:intergenic 50.0%
TCCTCTTTGATGTGAGGGCA+AGG - chr7_1:60796355-60796374 None:intergenic 50.0%
AGTAGACGAGTAATCTCCCG+CGG + chr7_1:60796384-60796403 Msa1028150:exon 50.0%
CTCCCGCGGAATAGTATTGT+AGG + chr7_1:60796398-60796417 Msa1028150:three_prime_UTR 50.0%
GTGGAAAGCGGCGAGTATGT+CGG + chr7_1:60792695-60792714 Msa1028150:CDS 55.0%
GCTACAACAGTCAGGAGGGT+CGG - chr7_1:60792792-60792811 None:intergenic 55.0%
! GCTCACGGGCGAGATCATTT+TGG + chr7_1:60792975-60792994 Msa1028150:intron 55.0%
ACCTGCTGTCATGCTTCCAC+TGG + chr7_1:60793358-60793377 Msa1028150:CDS 55.0%
! TCCAGTGGAAGCATGACAGC+AGG - chr7_1:60793362-60793381 None:intergenic 55.0%
GTCATGCTTCCACTGGATGC+CGG + chr7_1:60793365-60793384 Msa1028150:CDS 55.0%
ATACTCTCCACGACGTCCAC+AGG + chr7_1:60793590-60793609 Msa1028150:CDS 55.0%
! GTGCTTCTTACTGGTCTGCC+TGG + chr7_1:60793664-60793683 Msa1028150:CDS 55.0%
GGGACTGCAAACTTGCCTAG+TGG + chr7_1:60794455-60794474 Msa1028150:intron 55.0%
AACGCCGTGTATCGTATGCC+TGG + chr7_1:60794753-60794772 Msa1028150:CDS 55.0%
GTAGCTCGCGGTGATAAGAG+TGG + chr7_1:60795288-60795307 Msa1028150:CDS 55.0%
GCGGTATCTTGAGCAGCATG+GGG - chr7_1:60795326-60795345 None:intergenic 55.0%
CGCGGTATCTTGAGCAGCAT+GGG - chr7_1:60795327-60795346 None:intergenic 55.0%
ACGCGGTATCTTGAGCAGCA+TGG - chr7_1:60795328-60795347 None:intergenic 55.0%
GCCTTGCCCTCACATCAAAG+AGG + chr7_1:60796351-60796370 Msa1028150:CDS 55.0%
GCGGGAGATTACTCGTCTAC+TGG - chr7_1:60796385-60796404 None:intergenic 55.0%
AGCGGCGAGTATGTCGGTGT+TGG + chr7_1:60792701-60792720 Msa1028150:CDS 60.0%
ACAGTCAGGAGGGTCGGCAA+TGG - chr7_1:60792786-60792805 None:intergenic 60.0%
AAGGCTTCACCGGCATCCAG+TGG - chr7_1:60793377-60793396 None:intergenic 60.0%
ACATCGACCTGTGGACGTCG+TGG - chr7_1:60793600-60793619 None:intergenic 60.0%
TCTGCCTGGACTGCCAGAGA+GGG + chr7_1:60793678-60793697 Msa1028150:CDS 60.0%
AACACCCTCTCTGGCAGTCC+AGG - chr7_1:60793685-60793704 None:intergenic 60.0%
GCGAAGAGGAACCTTCGAGC+AGG + chr7_1:60795620-60795639 Msa1028150:CDS 60.0%
GTCTGCCTGGACTGCCAGAG+AGG + chr7_1:60793677-60793696 Msa1028150:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 60790762 60796684 60790762 ID=Msa1028150;Name=Msa1028150
chr7_1 mRNA 60790762 60796684 60790762 ID=Msa1028150-mRNA-1;Parent=Msa1028150;Name=Msa1028150-mRNA-1;_AED=0.13;_eAED=0.13;_QI=200|1|1|1|1|1|14|288|537
chr7_1 exon 60790762 60791093 60790762 ID=Msa1028150-mRNA-1:exon:12702;Parent=Msa1028150-mRNA-1
chr7_1 exon 60792668 60792826 60792668 ID=Msa1028150-mRNA-1:exon:12703;Parent=Msa1028150-mRNA-1
chr7_1 exon 60792976 60793087 60792976 ID=Msa1028150-mRNA-1:exon:12704;Parent=Msa1028150-mRNA-1
chr7_1 exon 60793309 60793425 60793309 ID=Msa1028150-mRNA-1:exon:12705;Parent=Msa1028150-mRNA-1
chr7_1 exon 60793577 60793728 60793577 ID=Msa1028150-mRNA-1:exon:12706;Parent=Msa1028150-mRNA-1
chr7_1 exon 60793944 60794126 60793944 ID=Msa1028150-mRNA-1:exon:12707;Parent=Msa1028150-mRNA-1
chr7_1 exon 60794456 60794490 60794456 ID=Msa1028150-mRNA-1:exon:12708;Parent=Msa1028150-mRNA-1
chr7_1 exon 60794631 60794793 60794631 ID=Msa1028150-mRNA-1:exon:12709;Parent=Msa1028150-mRNA-1
chr7_1 exon 60794921 60794974 60794921 ID=Msa1028150-mRNA-1:exon:12710;Parent=Msa1028150-mRNA-1
chr7_1 exon 60795091 60795183 60795091 ID=Msa1028150-mRNA-1:exon:12711;Parent=Msa1028150-mRNA-1
chr7_1 exon 60795288 60795430 60795288 ID=Msa1028150-mRNA-1:exon:12712;Parent=Msa1028150-mRNA-1
chr7_1 exon 60795607 60795677 60795607 ID=Msa1028150-mRNA-1:exon:12713;Parent=Msa1028150-mRNA-1
chr7_1 exon 60795780 60795863 60795780 ID=Msa1028150-mRNA-1:exon:12714;Parent=Msa1028150-mRNA-1
chr7_1 exon 60796281 60796684 60796281 ID=Msa1028150-mRNA-1:exon:12715;Parent=Msa1028150-mRNA-1
chr7_1 five_prime_UTR 60790762 60790961 60790762 ID=Msa1028150-mRNA-1:five_prime_utr;Parent=Msa1028150-mRNA-1
chr7_1 CDS 60790962 60791093 60790962 ID=Msa1028150-mRNA-1:cds;Parent=Msa1028150-mRNA-1
chr7_1 CDS 60792668 60792826 60792668 ID=Msa1028150-mRNA-1:cds;Parent=Msa1028150-mRNA-1
chr7_1 CDS 60792976 60793087 60792976 ID=Msa1028150-mRNA-1:cds;Parent=Msa1028150-mRNA-1
chr7_1 CDS 60793309 60793425 60793309 ID=Msa1028150-mRNA-1:cds;Parent=Msa1028150-mRNA-1
chr7_1 CDS 60793577 60793728 60793577 ID=Msa1028150-mRNA-1:cds;Parent=Msa1028150-mRNA-1
chr7_1 CDS 60793944 60794126 60793944 ID=Msa1028150-mRNA-1:cds;Parent=Msa1028150-mRNA-1
chr7_1 CDS 60794456 60794490 60794456 ID=Msa1028150-mRNA-1:cds;Parent=Msa1028150-mRNA-1
chr7_1 CDS 60794631 60794793 60794631 ID=Msa1028150-mRNA-1:cds;Parent=Msa1028150-mRNA-1
chr7_1 CDS 60794921 60794974 60794921 ID=Msa1028150-mRNA-1:cds;Parent=Msa1028150-mRNA-1
chr7_1 CDS 60795091 60795183 60795091 ID=Msa1028150-mRNA-1:cds;Parent=Msa1028150-mRNA-1
chr7_1 CDS 60795288 60795430 60795288 ID=Msa1028150-mRNA-1:cds;Parent=Msa1028150-mRNA-1
chr7_1 CDS 60795607 60795677 60795607 ID=Msa1028150-mRNA-1:cds;Parent=Msa1028150-mRNA-1
chr7_1 CDS 60795780 60795863 60795780 ID=Msa1028150-mRNA-1:cds;Parent=Msa1028150-mRNA-1
chr7_1 CDS 60796281 60796396 60796281 ID=Msa1028150-mRNA-1:cds;Parent=Msa1028150-mRNA-1
chr7_1 three_prime_UTR 60796397 60796684 60796397 ID=Msa1028150-mRNA-1:three_prime_utr;Parent=Msa1028150-mRNA-1
Gene Sequence

>Msa1028150

ATGCCTTCTTTTACACCTATCTTCTTCTTCTCTGTGTTCATGGTTCTTCTTACTTTCTCTTTTGCTGGTGATATAGTTCATCATGATAGTATTGCTCCTAAGAAACCTGGATGTGACAACAACTTTGTTCTGGTTAAAGTTCCAATTTCAATTGATGGTGTGGAAAGCGGCGAGTATGTCGGTGTTGGTGCAAGATTTGGACCTACATTGGAATCAAAAGAAAAACGTGCTAACCATACTAGAGTTGCCATTGCCGACCCTCCTGACTGTTGTAGCAAACCTAAGAATAAGCTCACGGGCGAGATCATTTTGGTGCACCGAGGACAATGTAGTTTCACAACCAAGGCAAATATAGCTGAAGAAGCTGGTGCTTCAGCCATCCTGATTATAAATAACGCTAAAGGACTTTTCAAGATGGTTTGTGAAAATGAAACCGATATTGATATTGGAATACCTGCTGTCATGCTTCCACTGGATGCCGGTGAAGCCTTGAAAAAATATATACAAAACAAGTCCACAGTGTCTGTGCAGTTATACTCTCCACGACGTCCACAGGTCGATGTTGCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATTCTCTGTGCTTCTTACTGGTCTGCCTGGACTGCCAGAGAGGGTGTTATTGAGCAAGAGAAGCTATTAAAGGATGATTCAGATGAGCTTCTAAATATAGAGAATGCTGGTTCCAGTGCTTTTTTGGAAATAAGCACCACGGCAGCACTTTCATTCGTTGTGATTGCTTCTTGTTTCTTGTTTATGCTTTACAAACTAATGGGAAGATGGTTCATTGATGTTCTGGTGGTTCTGTTTTGTATTGGTGGTGTTGAGGGACTGCAAACTTGCCTAGTGGCTCTTTTATCACATTTCAGATGGTCTCAACATGCTGCACAAACATATGTGAAAGTACCCTTCTTCGGTGCTGTTTCACATCTCACTCTTGCTGTCACCCCCTTCTGCATAGCATTCGCTGTGGTTTGGGGAGTTGAACGCCGTGTATCGTATGCCTGGATTGGTCAAGATATTCTTGGTATCGCTTTGATAATTACGGTTCTTCAGATTGTCCAAATACCAAACCTCAAGGTTGGAACTGTTCTTCTCAGCTGCGCCTTCCTATATGACATCTTCTGGGTGTTTGTCTCTAAACTGATTTTCCATGAGAGTGTGATGATAGTGGTAGCTCGCGGTGATAAGAGTGGAGAAGATGGTATCCCCATGCTGCTCAAGATACCGCGTTTATTCGATCCTTGGGGTGGTTACAGTGTCATCGGTTTCGGGGACATAATTTTACCAGGGCTTCTAGTAGCATTTTCGTTAAGGTATGATTGGTTAGCGAAGAGGAACCTTCGAGCAGGATACTTCTTGTGGACGATGAGTGCCTATGGTTTAGGTCTCCTTGTCACATACATAGCTTTGAATTTGATGGATGGGCATGGTCAACCAGCTTTGCTGTATATAGTCCCATTTACACTTGGAACCTTTTTGTCATTGGGAAAGAAGAGAGGCGAACTTGAGATTTTATGGACAAGGGGGATGCCAAAAATGCCTTGCCCTCACATCAAAGAGGATCATCAACCAGTAGACGAGTAA

Protein sequence

>Msa1028150

MPSFTPIFFFSVFMVLLTFSFAGDIVHHDSIAPKKPGCDNNFVLVKVPISIDGVESGEYVGVGARFGPTLESKEKRANHTRVAIADPPDCCSKPKNKLTGEIILVHRGQCSFTTKANIAEEAGASAILIINNAKGLFKMVCENETDIDIGIPAVMLPLDAGEALKKYIQNKSTVSVQLYSPRRPQVDVAEVFLWLMAVGTILCASYWSAWTAREGVIEQEKLLKDDSDELLNIENAGSSAFLEISTTAALSFVVIASCFLFMLYKLMGRWFIDVLVVLFCIGGVEGLQTCLVALLSHFRWSQHAAQTYVKVPFFGAVSHLTLAVTPFCIAFAVVWGVERRVSYAWIGQDILGIALIITVLQIVQIPNLKVGTVLLSCAFLYDIFWVFVSKLIFHESVMIVVARGDKSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLLVAFSLRYDWLAKRNLRAGYFLWTMSAYGLGLLVTYIALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGELEILWTRGMPKMPCPHIKEDHQPVDE*