AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1408230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1408230 MtrunA17_Chr7g0276051 77.358 265 7 3 1 212 1 265 1.63e-136 383
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1408230 AT3G61870.1 70.297 202 35 2 36 212 71 272 3.27e-95 279
Msa1408230 AT3G61870.2 76.667 120 26 1 36 153 71 190 2.74e-63 197

Find 80 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTACCTCAGTAAGTTTC+TGG 0.119805 tig0023376:-74856 None:intergenic
CAGAGCAATGTGAAGATTTC+TGG 0.157106 tig0023376:-76474 None:intergenic
TACTCTATATGCTGGCTATT+TGG 0.163712 tig0023376:+74700 Msa1408230:CDS
ACTCTATATGCTGGCTATTT+GGG 0.167865 tig0023376:+74701 Msa1408230:CDS
CTTGGTTTAGGTTTGATTAA+AGG 0.236613 tig0023376:+77241 Msa1408230:intron
AATGCTGGATCCATACTTCT+AGG 0.237863 tig0023376:+75222 Msa1408230:CDS
GGGAGGGACAATATTGAATT+TGG 0.249343 tig0023376:-74395 None:intergenic
CTTGCTGTTGGTGGAGAGTT+TGG 0.257500 tig0023376:+74614 Msa1408230:CDS
CTACAGGCATTACCGTCTTA+TGG 0.261340 tig0023376:+76402 Msa1408230:intron
TTGGTTTAGGTTTGATTAAA+GGG 0.300921 tig0023376:+77242 Msa1408230:intron
TGATCAACGGAAAATATCTA+AGG 0.322176 tig0023376:-77454 None:intergenic
GGATCCATACTTCTAGGATT+TGG 0.333492 tig0023376:+75228 Msa1408230:CDS
GACACCAAATCCTAGAAGTA+TGG 0.335633 tig0023376:-75232 None:intergenic
GGTGGCAATGGCGCCGAGTT+AGG 0.351922 tig0023376:+74723 Msa1408230:CDS
TTCTGGATTTGAAGTTCAAC+AGG 0.366516 tig0023376:-74839 None:intergenic
CCACTGGACTTGATATTGTA+TGG 0.370736 tig0023376:+76534 Msa1408230:CDS
TTGCTGTTGGTGGAGAGTTT+GGG 0.379213 tig0023376:+74615 Msa1408230:CDS
TACAGGCATTACCGTCTTAT+GGG 0.383650 tig0023376:+76403 Msa1408230:intron
AAATGCATCATATATATTCA+TGG 0.389220 tig0023376:+77515 Msa1408230:three_prime_UTR
CCATCAGGGGCGACCGGTGC+AGG 0.389468 tig0023376:-74788 None:intergenic
CTCATTCACCCCATTGTGTT+GGG 0.394218 tig0023376:+74662 Msa1408230:CDS
TCTAGGATTTGGTGTCTTTG+AGG 0.397090 tig0023376:+75239 Msa1408230:CDS
CCAACCTCATTAATGTATCT+TGG 0.399710 tig0023376:+77383 Msa1408230:three_prime_UTR
GTTTCAAGTGCTTTACCATC+AGG 0.409813 tig0023376:-74803 None:intergenic
AAGTGTTTGAGTTCACAAAA+TGG 0.411552 tig0023376:+76558 Msa1408230:CDS
TTCTTCTATACTCTATATGC+TGG 0.412278 tig0023376:+74692 Msa1408230:CDS
CAAGAGGCAAGCCTTAAAAC+AGG 0.419777 tig0023376:-77321 None:intergenic
AACAAACCACCCAACACAAT+GGG 0.420393 tig0023376:-74671 None:intergenic
CCAAGATACATTAATGAGGT+TGG 0.420787 tig0023376:-77383 None:intergenic
GGAGAGTTTGGGATATTTGA+AGG 0.424876 tig0023376:+74626 Msa1408230:CDS
GTTTCACTGCCTTTCTGCAT+CGG 0.434740 tig0023376:-76449 None:intergenic
CAAGATACATTAATGAGGTT+GGG 0.443778 tig0023376:-77382 None:intergenic
AGCTTATCAAAGGTTCATAC+AGG 0.459882 tig0023376:+75187 Msa1408230:CDS
GGGACAATATTGAATTTGGA+TGG 0.460106 tig0023376:-74391 None:intergenic
TTTGGTGTCTTTGAGGCTGT+TGG 0.460543 tig0023376:+75246 Msa1408230:CDS
TTTGTGTGGCAGATTCCCAC+TGG 0.462816 tig0023376:+76518 Msa1408230:CDS
GTTTGATTAAAGGGACATCA+TGG 0.474909 tig0023376:+77251 Msa1408230:three_prime_UTR
TTAAAGGGACATCATGGATC+CGG 0.474966 tig0023376:+77257 Msa1408230:three_prime_UTR
TCTCATTCACCCCATTGTGT+TGG 0.487054 tig0023376:+74661 Msa1408230:CDS
TGTCTTGATGCTTGAAAGAA+TGG 0.487965 tig0023376:-74335 None:intergenic
CTGGCTATTTGGGGTGGCAA+TGG 0.493451 tig0023376:+74711 Msa1408230:CDS
AACTGAGAGCTAAGTAAAGA+AGG 0.498417 tig0023376:-77427 None:intergenic
CAGGATGCACTTGCTGTTGG+TGG 0.511437 tig0023376:+74605 Msa1408230:intron
CCTGCACCGGTCGCCCCTGA+TGG 0.520003 tig0023376:+74788 Msa1408230:CDS
CTCTATCATTGAACTCGACC+CGG 0.522465 tig0023376:-77276 None:intergenic
GCTTTACCATCAGGGGCGAC+CGG 0.523702 tig0023376:-74794 None:intergenic
ATTCACCCCATTGTGTTGGG+TGG 0.524385 tig0023376:+74665 Msa1408230:CDS
AGGGATAAACACTTTAATGC+TGG 0.528614 tig0023376:+75207 Msa1408230:CDS
CTCTATATGCTGGCTATTTG+GGG 0.531439 tig0023376:+74702 Msa1408230:CDS
CATTACCGTCTTATGGGCAC+TGG 0.546801 tig0023376:+76409 Msa1408230:CDS
TTCAAGTGCTTTACCATCAG+GGG 0.547033 tig0023376:-74801 None:intergenic
AACAGCAAGTTTGTGATCAA+CGG 0.547060 tig0023376:-77467 None:intergenic
ATATTGAATTTGGATGGAAG+TGG 0.548645 tig0023376:-74385 None:intergenic
ATTTGAAGTTCAACAGGTGA+TGG 0.552879 tig0023376:-74833 None:intergenic
ACTCAAATGTACACAACAAG+AGG 0.562024 tig0023376:-77337 None:intergenic
TGAATGTTCTTCTCTTTGTG+TGG 0.562680 tig0023376:+76504 Msa1408230:CDS
TTTCAAGTGCTTTACCATCA+GGG 0.566094 tig0023376:-74802 None:intergenic
ATATGAGAATCATACATTCA+AGG 0.567075 tig0023376:-76581 None:intergenic
TAAAGGGACATCATGGATCC+GGG 0.567503 tig0023376:+77258 Msa1408230:three_prime_UTR
GAGAGGAAAGAGCTTATCAA+AGG 0.578252 tig0023376:+75177 Msa1408230:CDS
GAAACAACTCAAACCTGCAC+CGG 0.583822 tig0023376:+74775 Msa1408230:CDS
GAACAAACCACCCAACACAA+TGG 0.584006 tig0023376:-74672 None:intergenic
TCTTCCAAGATACATTAATG+AGG 0.586730 tig0023376:-77387 None:intergenic
TGCTGCCAGTGCCCATAAGA+CGG 0.586926 tig0023376:-76414 None:intergenic
GTTCAATGATAGAGATGAGA+CGG 0.590996 tig0023376:+77285 Msa1408230:three_prime_UTR
TCACTGCCTTTCTGCATCGG+TGG 0.596727 tig0023376:-76446 None:intergenic
CTAGTACCACCGATGCAGAA+AGG 0.597429 tig0023376:+76440 Msa1408230:CDS
GTCTTGATGCTTGAAAGAAT+GGG 0.604119 tig0023376:-74334 None:intergenic
AAACAGGATGCACTTGCTGT+TGG 0.612832 tig0023376:+74602 Msa1408230:intron
CCATACAATATCAAGTCCAG+TGG 0.632516 tig0023376:-76534 None:intergenic
TGAAGTTCAACAGGTGATGG+CGG 0.633139 tig0023376:-74830 None:intergenic
AAGCTTGACAAGACTGAGTG+TGG 0.639748 tig0023376:-74311 None:intergenic
AAGAGGCAAGCCTTAAAACA+GGG 0.655431 tig0023376:-77320 None:intergenic
TATATGCTGGCTATTTGGGG+TGG 0.656872 tig0023376:+74705 Msa1408230:CDS
CATACAATATCAAGTCCAGT+GGG 0.666329 tig0023376:-76533 None:intergenic
GCTTATCAAAGGTTCATACA+GGG 0.677877 tig0023376:+75188 Msa1408230:CDS
CTTGACAAGACTGAGTGTGG+AGG 0.697793 tig0023376:-74308 None:intergenic
AGAGGCAAGCCTTAAAACAG+GGG 0.702527 tig0023376:-77319 None:intergenic
ACAAACCACCCAACACAATG+GGG 0.717466 tig0023376:-74670 None:intergenic
TCAAATCCAGAAACTTACTG+AGG 0.721925 tig0023376:+74850 Msa1408230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTTTTGTGATGTA+AGG + tig0023376:74934-74953 Msa1408230:intron 15.0%
!! AAAACAAAAGAGTAAAGATA+TGG - tig0023376:74553-74572 None:intergenic 20.0%
!! TTTATTTAACAGAAGCAAAA+AGG - tig0023376:75462-75481 None:intergenic 20.0%
!!! CACATAAAATATTAGTTTGT+TGG - tig0023376:76249-76268 None:intergenic 20.0%
!!! AACTAATATTTTATGTGATC+CGG + tig0023376:76252-76271 Msa1408230:intron 20.0%
!!! TAAAGAAAATTGATAACACT+TGG + tig0023376:76368-76387 Msa1408230:intron 20.0%
!! TTTACTTTCAAATCAGTATT+TGG + tig0023376:76624-76643 Msa1408230:intron 20.0%
!! TACTACATTATACAAAAGAA+TGG - tig0023376:76744-76763 None:intergenic 20.0%
!! ACGTTCAAATTATTACATAA+AGG + tig0023376:76779-76798 Msa1408230:intron 20.0%
!! CAAATTATTACATAAAGGAA+TGG + tig0023376:76784-76803 Msa1408230:intron 20.0%
!! CAATTGTTTAGAAATATTGT+TGG + tig0023376:76832-76851 Msa1408230:intron 20.0%
!! AATTTAGATTAAATCAAGCA+AGG + tig0023376:76865-76884 Msa1408230:intron 20.0%
!!! TATGTTTTAGACGTAAATAA+AGG + tig0023376:77015-77034 Msa1408230:intron 20.0%
!! AAATTAAAACAAAGTTGAAG+TGG - tig0023376:77186-77205 None:intergenic 20.0%
!! TTAATTTCTTTCATGAAACA+AGG + tig0023376:77199-77218 Msa1408230:intron 20.0%
!! AAATGCATCATATATATTCA+TGG + tig0023376:77515-77534 Msa1408230:three_prime_UTR 20.0%
! ATCTAATGAAAACTTTAGTG+GGG - tig0023376:74422-74441 None:intergenic 25.0%
! GATCTAATGAAAACTTTAGT+GGG - tig0023376:74423-74442 None:intergenic 25.0%
! TGATCTAATGAAAACTTTAG+TGG - tig0023376:74424-74443 None:intergenic 25.0%
! AATCACATTTCCATTCTTAT+TGG + tig0023376:74486-74505 Msa1408230:intron 25.0%
! AAAGATATGGATGAAAGAAT+AGG - tig0023376:74540-74559 None:intergenic 25.0%
! TTTCAACAACATTCATATCA+TGG - tig0023376:74585-74604 None:intergenic 25.0%
! AGCATGCAATAATACATAAA+GGG - tig0023376:74891-74910 None:intergenic 25.0%
! AAGCATGCAATAATACATAA+AGG - tig0023376:74892-74911 None:intergenic 25.0%
! CAAACTTAGTATTAAAATCC+AGG - tig0023376:75080-75099 None:intergenic 25.0%
!! AATTTGCTCTTGAATCAAAT+GGG - tig0023376:75354-75373 None:intergenic 25.0%
!!! TAATTTGCTCTTGAATCAAA+TGG - tig0023376:75355-75374 None:intergenic 25.0%
! AAGTACATTTAGAAAACAGA+GGG - tig0023376:75419-75438 None:intergenic 25.0%
! TAAGTACATTTAGAAAACAG+AGG - tig0023376:75420-75439 None:intergenic 25.0%
!!! CACAAACTTGTTAAATCTTA+AGG + tig0023376:75664-75683 Msa1408230:intron 25.0%
! ACATAGATGAACTTATTAGT+GGG + tig0023376:75697-75716 Msa1408230:intron 25.0%
!!! TGATTATCACTTTTCTGAAT+GGG - tig0023376:75848-75867 None:intergenic 25.0%
!!! TTGATTATCACTTTTCTGAA+TGG - tig0023376:75849-75868 None:intergenic 25.0%
! TCACATTGAGAGAAAAATAA+GGG + tig0023376:76000-76019 Msa1408230:intron 25.0%
! AATAGGGGTTACTTAAAATT+CGG - tig0023376:76153-76172 None:intergenic 25.0%
!! ACTAATATTTTATGTGATCC+GGG + tig0023376:76253-76272 Msa1408230:intron 25.0%
! ATATGAGAATCATACATTCA+AGG - tig0023376:76584-76603 None:intergenic 25.0%
! GATTTGAAAGTAAAATACCT+GGG - tig0023376:76618-76637 None:intergenic 25.0%
! TGATTTGAAAGTAAAATACC+TGG - tig0023376:76619-76638 None:intergenic 25.0%
! ATGTATTATGTATGAGGATT+CGG + tig0023376:77095-77114 Msa1408230:intron 25.0%
! AAACCTAAACCAAGTTATTA+AGG - tig0023376:77235-77254 None:intergenic 25.0%
!! TTGGTTTAGGTTTGATTAAA+GGG + tig0023376:77242-77261 Msa1408230:intron 25.0%
ATATTGAATTTGGATGGAAG+TGG - tig0023376:74388-74407 None:intergenic 30.0%
ACAACATTCATATCATGGAT+TGG - tig0023376:74580-74599 None:intergenic 30.0%
GATATGAATGTTGTTGAAAC+AGG + tig0023376:74586-74605 Msa1408230:intron 30.0%
TTCTTCTATACTCTATATGC+TGG + tig0023376:74692-74711 Msa1408230:CDS 30.0%
! CATTTTGAATAGTCCTAACT+CGG - tig0023376:74739-74758 None:intergenic 30.0%
ATGTATTATTGCATGCTTCT+TGG + tig0023376:74894-74913 Msa1408230:intron 30.0%
! TTTGTGATGTAAGGACTTTT+CGG + tig0023376:74943-74962 Msa1408230:intron 30.0%
AGTGGTAGTTTCATTAACTA+TGG + tig0023376:75051-75070 Msa1408230:intron 30.0%
TTTCATTAACTATGGTATCC+TGG + tig0023376:75059-75078 Msa1408230:intron 30.0%
CTAAGTTTGTAATTAGTGAG+AGG + tig0023376:75091-75110 Msa1408230:intron 30.0%
GCTGTTTAAAAATGCATCAA+GGG - tig0023376:75387-75406 None:intergenic 30.0%
! TGCTGTTTAAAAATGCATCA+AGG - tig0023376:75388-75407 None:intergenic 30.0%
AGTACATTTAGAAAACAGAG+GGG - tig0023376:75418-75437 None:intergenic 30.0%
!! AAAAAGGTGTTACCTGTAAA+TGG - tig0023376:75446-75465 None:intergenic 30.0%
GATGACAGGGTATAAATTTA+GGG - tig0023376:75492-75511 None:intergenic 30.0%
AGATGACAGGGTATAAATTT+AGG - tig0023376:75493-75512 None:intergenic 30.0%
! GACATTTTTACAAGATGACA+GGG - tig0023376:75505-75524 None:intergenic 30.0%
! AGACATTTTTACAAGATGAC+AGG - tig0023376:75506-75525 None:intergenic 30.0%
! ACAATTTGTTCAAACGTTCA+AGG - tig0023376:75622-75641 None:intergenic 30.0%
CACATAGATGAACTTATTAG+TGG + tig0023376:75696-75715 Msa1408230:intron 30.0%
AAAGTAGTAAAGTGAAGGTT+GGG - tig0023376:75753-75772 None:intergenic 30.0%
ATTAAGAAGAACTTTCTCTC+AGG - tig0023376:75787-75806 None:intergenic 30.0%
ATCCATAACTTGACTAAACA+AGG + tig0023376:75807-75826 Msa1408230:intron 30.0%
TCCATAACTTGACTAAACAA+GGG + tig0023376:75808-75827 Msa1408230:intron 30.0%
GTCACATTGAGAGAAAAATA+AGG + tig0023376:75999-76018 Msa1408230:intron 30.0%
GCATGTACTTAAGAATTAGA+GGG + tig0023376:76029-76048 Msa1408230:intron 30.0%
CATGTACTTAAGAATTAGAG+GGG + tig0023376:76030-76049 Msa1408230:intron 30.0%
ATGTACTTAAGAATTAGAGG+GGG + tig0023376:76031-76050 Msa1408230:intron 30.0%
!! ATTTTGAAAGATCTCAGATG+AGG + tig0023376:76064-76083 Msa1408230:intron 30.0%
! GATGTAATGGAAAGTAGTTA+CGG + tig0023376:76089-76108 Msa1408230:intron 30.0%
!! TACAAAGTGTTGTCAAATAG+TGG + tig0023376:76194-76213 Msa1408230:intron 30.0%
TCTTACCTTTATCCCAAAAT+TGG - tig0023376:76283-76302 None:intergenic 30.0%
TATATTCAATCTGACGAAGT+TGG + tig0023376:76305-76324 Msa1408230:intron 30.0%
ATATTCAATCTGACGAAGTT+GGG + tig0023376:76306-76325 Msa1408230:intron 30.0%
! AAGTGTTTGAGTTCACAAAA+TGG + tig0023376:76558-76577 Msa1408230:CDS 30.0%
AGCAAGGTCAAATATTCTAT+AGG + tig0023376:76881-76900 Msa1408230:intron 30.0%
! ATTTTCAACATACAGCTTAC+TGG - tig0023376:76947-76966 None:intergenic 30.0%
GCTGTATGTTGAAAATTTGA+AGG + tig0023376:76951-76970 Msa1408230:intron 30.0%
ATAACCTTACTAAAAGAAGC+TGG + tig0023376:77051-77070 Msa1408230:intron 30.0%
! CTTTGTTTGAGATATAGAGT+CGG - tig0023376:77154-77173 None:intergenic 30.0%
! CTTGGTTTAGGTTTGATTAA+AGG + tig0023376:77241-77260 Msa1408230:intron 30.0%
CAAGATACATTAATGAGGTT+GGG - tig0023376:77385-77404 None:intergenic 30.0%
TCTTCCAAGATACATTAATG+AGG - tig0023376:77390-77409 None:intergenic 30.0%
TGATCAACGGAAAATATCTA+AGG - tig0023376:77457-77476 None:intergenic 30.0%
GTCTTGATGCTTGAAAGAAT+GGG - tig0023376:74337-74356 None:intergenic 35.0%
TGTCTTGATGCTTGAAAGAA+TGG - tig0023376:74338-74357 None:intergenic 35.0%
!!! CAACATGTTTTGAGGTTGAT+TGG - tig0023376:74363-74382 None:intergenic 35.0%
! AAGTGGAACAACATGTTTTG+AGG - tig0023376:74371-74390 None:intergenic 35.0%
GGGACAATATTGAATTTGGA+TGG - tig0023376:74394-74413 None:intergenic 35.0%
AATGAAAACTTTAGTGGGGT+GGG - tig0023376:74418-74437 None:intergenic 35.0%
TAATGAAAACTTTAGTGGGG+TGG - tig0023376:74419-74438 None:intergenic 35.0%
TCCATTCTTATTGGATACCA+AGG + tig0023376:74495-74514 Msa1408230:intron 35.0%
! TACTCTATATGCTGGCTATT+TGG + tig0023376:74700-74719 Msa1408230:CDS 35.0%
! ACTCTATATGCTGGCTATTT+GGG + tig0023376:74701-74720 Msa1408230:CDS 35.0%
! TTTCAAGTGCTTTACCATCA+GGG - tig0023376:74805-74824 None:intergenic 35.0%
! ATTTGAAGTTCAACAGGTGA+TGG - tig0023376:74836-74855 None:intergenic 35.0%
! TTCTGGATTTGAAGTTCAAC+AGG - tig0023376:74842-74861 None:intergenic 35.0%
TCAAATCCAGAAACTTACTG+AGG + tig0023376:74850-74869 Msa1408230:CDS 35.0%
TATTATTGCATGCTTCTTGG+TGG + tig0023376:74897-74916 Msa1408230:intron 35.0%
! GGACTTTTCGGATTAAGTAA+TGG + tig0023376:74955-74974 Msa1408230:intron 35.0%
TGAAACTACCACTGATAAGA+AGG - tig0023376:75044-75063 None:intergenic 35.0%
! CTGATGAGTACCTAATTTGT+TGG + tig0023376:75136-75155 Msa1408230:intron 35.0%
!! TGAGTACCTAATTTGTTGGT+TGG + tig0023376:75140-75159 Msa1408230:intron 35.0%
CAGTAACCAACCAACAAATT+AGG - tig0023376:75149-75168 None:intergenic 35.0%
! TTGGTTGGTTACTGATATTC+AGG + tig0023376:75155-75174 Msa1408230:intron 35.0%
AGCTTATCAAAGGTTCATAC+AGG + tig0023376:75187-75206 Msa1408230:CDS 35.0%
GCTTATCAAAGGTTCATACA+GGG + tig0023376:75188-75207 Msa1408230:CDS 35.0%
AGGGATAAACACTTTAATGC+TGG + tig0023376:75207-75226 Msa1408230:CDS 35.0%
GTTTAAAAATGCATCAAGGG+AGG - tig0023376:75384-75403 None:intergenic 35.0%
GTACATTTAGAAAACAGAGG+GGG - tig0023376:75417-75436 None:intergenic 35.0%
ATGTACTTACCTCCATTTAC+AGG + tig0023376:75431-75450 Msa1408230:intron 35.0%
AGCTCCTTCTAGATTAAGTA+CGG - tig0023376:75558-75577 None:intergenic 35.0%
! AGATGAACTTATTAGTGGGT+TGG + tig0023376:75701-75720 Msa1408230:intron 35.0%
!!! GTTGGGAGTTTTAAGTAACA+TGG - tig0023376:75736-75755 None:intergenic 35.0%
CAAAGTAGTAAAGTGAAGGT+TGG - tig0023376:75754-75773 None:intergenic 35.0%
GCATCAAAGTAGTAAAGTGA+AGG - tig0023376:75758-75777 None:intergenic 35.0%
AGAACTTTCTCTCAGGTTTA+AGG - tig0023376:75780-75799 None:intergenic 35.0%
CCATAACTTGACTAAACAAG+GGG + tig0023376:75809-75828 Msa1408230:intron 35.0%
CATAACTTGACTAAACAAGG+GGG + tig0023376:75810-75829 Msa1408230:intron 35.0%
TGTGAATTGAGAGAGATTAC+AGG + tig0023376:75942-75961 Msa1408230:intron 35.0%
GTGAATTGAGAGAGATTACA+GGG + tig0023376:75943-75962 Msa1408230:intron 35.0%
TGAATTGAGAGAGATTACAG+GGG + tig0023376:75944-75963 Msa1408230:intron 35.0%
! ATTAACGGTGTTAGAGGAAA+AGG + tig0023376:75967-75986 Msa1408230:intron 35.0%
! TTAACGGTGTTAGAGGAAAA+GGG + tig0023376:75968-75987 Msa1408230:intron 35.0%
CATTGAGAGAAAAATAAGGG+AGG + tig0023376:76003-76022 Msa1408230:intron 35.0%
CGCATGTACTTAAGAATTAG+AGG + tig0023376:76028-76047 Msa1408230:intron 35.0%
TCGAGTATCTCTGAACAATA+GGG - tig0023376:76169-76188 None:intergenic 35.0%
ATCGAGTATCTCTGAACAAT+AGG - tig0023376:76170-76189 None:intergenic 35.0%
TGGCAATAACAATGCTATAG+CGG + tig0023376:76214-76233 Msa1408230:intron 35.0%
!!! GATTGCCAATTTTGGGATAA+AGG + tig0023376:76275-76294 Msa1408230:intron 35.0%
! CTTGGATAATTTTTCCCTAC+AGG + tig0023376:76386-76405 Msa1408230:intron 35.0%
TGAATGTTCTTCTCTTTGTG+TGG + tig0023376:76504-76523 Msa1408230:CDS 35.0%
CATACAATATCAAGTCCAGT+GGG - tig0023376:76536-76555 None:intergenic 35.0%
TCATATGTAAGTAAGTTCCC+AGG + tig0023376:76598-76617 Msa1408230:intron 35.0%
CAATTATGTTACGAGGTCAA+AGG - tig0023376:76688-76707 None:intergenic 35.0%
! AGCTACATGATTTTGCATGT+AGG + tig0023376:76991-77010 Msa1408230:intron 35.0%
! TTGTCCAGCTTCTTTTAGTA+AGG - tig0023376:77058-77077 None:intergenic 35.0%
GCATGCATGTATTATGTATG+AGG + tig0023376:77089-77108 Msa1408230:intron 35.0%
TAGACACGACCTTAATAACT+TGG + tig0023376:77223-77242 Msa1408230:intron 35.0%
CGACCTTAATAACTTGGTTT+AGG + tig0023376:77229-77248 Msa1408230:intron 35.0%
GTTTGATTAAAGGGACATCA+TGG + tig0023376:77251-77270 Msa1408230:three_prime_UTR 35.0%
GTTCAATGATAGAGATGAGA+CGG + tig0023376:77285-77304 Msa1408230:three_prime_UTR 35.0%
ACTCAAATGTACACAACAAG+AGG - tig0023376:77340-77359 None:intergenic 35.0%
CCAAGATACATTAATGAGGT+TGG - tig0023376:77386-77405 None:intergenic 35.0%
CCAACCTCATTAATGTATCT+TGG + tig0023376:77383-77402 Msa1408230:three_prime_UTR 35.0%
AACTGAGAGCTAAGTAAAGA+AGG - tig0023376:77430-77449 None:intergenic 35.0%
AACAGCAAGTTTGTGATCAA+CGG - tig0023376:77470-77489 None:intergenic 35.0%
GGGAGGGACAATATTGAATT+TGG - tig0023376:74398-74417 None:intergenic 40.0%
TGGAAATGTGATTGCTGTGA+GGG - tig0023376:74479-74498 None:intergenic 40.0%
ATGGAAATGTGATTGCTGTG+AGG - tig0023376:74480-74499 None:intergenic 40.0%
GCCTTGGTATCCAATAAGAA+TGG - tig0023376:74499-74518 None:intergenic 40.0%
! GGAGAGTTTGGGATATTTGA+AGG + tig0023376:74626-74645 Msa1408230:CDS 40.0%
AACAAACCACCCAACACAAT+GGG - tig0023376:74674-74693 None:intergenic 40.0%
! CTCTATATGCTGGCTATTTG+GGG + tig0023376:74702-74721 Msa1408230:CDS 40.0%
TTCAAGTGCTTTACCATCAG+GGG - tig0023376:74804-74823 None:intergenic 40.0%
! GTTTCAAGTGCTTTACCATC+AGG - tig0023376:74806-74825 None:intergenic 40.0%
TGCTTACCTCAGTAAGTTTC+TGG - tig0023376:74859-74878 None:intergenic 40.0%
AGTACAAGCCTTCTTATCAG+TGG + tig0023376:75033-75052 Msa1408230:intron 40.0%
TGGTTACTGATATTCAGGAG+AGG + tig0023376:75160-75179 Msa1408230:intron 40.0%
GAGAGGAAAGAGCTTATCAA+AGG + tig0023376:75177-75196 Msa1408230:CDS 40.0%
AATGCTGGATCCATACTTCT+AGG + tig0023376:75222-75241 Msa1408230:CDS 40.0%
!! GGATCCATACTTCTAGGATT+TGG + tig0023376:75228-75247 Msa1408230:CDS 40.0%
GACACCAAATCCTAGAAGTA+TGG - tig0023376:75235-75254 None:intergenic 40.0%
!! TCTAGGATTTGGTGTCTTTG+AGG + tig0023376:75239-75258 Msa1408230:CDS 40.0%
! AAGGTGTTACCTGTAAATGG+AGG - tig0023376:75443-75462 None:intergenic 40.0%
TCTAGATTAAGTACGGCCAA+TGG - tig0023376:75551-75570 None:intergenic 40.0%
TTGGCCGTACTTAATCTAGA+AGG + tig0023376:75551-75570 Msa1408230:intron 40.0%
TTGACGAACATTCTACCTGT+CGG - tig0023376:75597-75616 None:intergenic 40.0%
! CCCCTTGTTTAGTCAAGTTA+TGG - tig0023376:75812-75831 None:intergenic 40.0%
AAAACTTCAAGCCATGTGCA+CGG + tig0023376:75873-75892 Msa1408230:intron 40.0%
! TTTTGATACTTCCGTGCACA+TGG - tig0023376:75887-75906 None:intergenic 40.0%
GAGAGATTACAGGGGATTAA+CGG + tig0023376:75952-75971 Msa1408230:intron 40.0%
CGAGTATCTCTGAACAATAG+GGG - tig0023376:76168-76187 None:intergenic 40.0%
TATCCCAAAATTGGCAATCC+CGG - tig0023376:76274-76293 None:intergenic 40.0%
ATCTTTGTAGCTCTCTGAGT+TGG + tig0023376:76330-76349 Msa1408230:intron 40.0%
TCTTTGTAGCTCTCTGAGTT+GGG + tig0023376:76331-76350 Msa1408230:intron 40.0%
! CTCTGAGTTGGGAATTGTAT+TGG + tig0023376:76342-76361 Msa1408230:intron 40.0%
ATAAGACGGTAATGCCTGTA+GGG - tig0023376:76403-76422 None:intergenic 40.0%
TACAGGCATTACCGTCTTAT+GGG + tig0023376:76403-76422 Msa1408230:intron 40.0%
CAGAGCAATGTGAAGATTTC+TGG - tig0023376:76477-76496 None:intergenic 40.0%
CCATACAATATCAAGTCCAG+TGG - tig0023376:76537-76556 None:intergenic 40.0%
CCACTGGACTTGATATTGTA+TGG + tig0023376:76534-76553 Msa1408230:CDS 40.0%
TGACACGCAATTATGTTACG+AGG - tig0023376:76695-76714 None:intergenic 40.0%
CAATTGCCTACCAAATGACA+AGG - tig0023376:76818-76837 None:intergenic 40.0%
TGAGATATAGAGTCGGAGAT+GGG - tig0023376:77147-77166 None:intergenic 40.0%
TTGAGATATAGAGTCGGAGA+TGG - tig0023376:77148-77167 None:intergenic 40.0%
TTAAAGGGACATCATGGATC+CGG + tig0023376:77257-77276 Msa1408230:three_prime_UTR 40.0%
AAGAGGCAAGCCTTAAAACA+GGG - tig0023376:77323-77342 None:intergenic 40.0%
AAGCTTGACAAGACTGAGTG+TGG - tig0023376:74314-74333 None:intergenic 45.0%
AAAACTTTAGTGGGGTGGGA+GGG - tig0023376:74414-74433 None:intergenic 45.0%
!! AAACAGGATGCACTTGCTGT+TGG + tig0023376:74602-74621 Msa1408230:intron 45.0%
! TTGCTGTTGGTGGAGAGTTT+GGG + tig0023376:74615-74634 Msa1408230:CDS 45.0%
TCTCATTCACCCCATTGTGT+TGG + tig0023376:74661-74680 Msa1408230:CDS 45.0%
CTCATTCACCCCATTGTGTT+GGG + tig0023376:74662-74681 Msa1408230:CDS 45.0%
ACAAACCACCCAACACAATG+GGG - tig0023376:74673-74692 None:intergenic 45.0%
GAACAAACCACCCAACACAA+TGG - tig0023376:74675-74694 None:intergenic 45.0%
! TATATGCTGGCTATTTGGGG+TGG + tig0023376:74705-74724 Msa1408230:CDS 45.0%
GAAACAACTCAAACCTGCAC+CGG + tig0023376:74775-74794 Msa1408230:CDS 45.0%
! TGAAGTTCAACAGGTGATGG+CGG - tig0023376:74833-74852 None:intergenic 45.0%
!! TTTGGTGTCTTTGAGGCTGT+TGG + tig0023376:75246-75265 Msa1408230:CDS 45.0%
GAGGACTCAACACATGGTTA+AGG + tig0023376:75271-75290 Msa1408230:intron 45.0%
CTCAACACATGGTTAAGGAC+AGG + tig0023376:75276-75295 Msa1408230:intron 45.0%
! AGGACAGGAAAGCTATTTCC+AGG + tig0023376:75291-75310 Msa1408230:intron 45.0%
CCTGCAAATAAATGTGGACC+TGG - tig0023376:75312-75331 None:intergenic 45.0%
CCAGGTCCACATTTATTTGC+AGG + tig0023376:75309-75328 Msa1408230:intron 45.0%
CCTGCTCCTGCAAATAAATG+TGG - tig0023376:75318-75337 None:intergenic 45.0%
CCACATTTATTTGCAGGAGC+AGG + tig0023376:75315-75334 Msa1408230:intron 45.0%
!! CCTGTCGGTTTCAAACTCTT+GGG - tig0023376:75582-75601 None:intergenic 45.0%
!! ACCTGTCGGTTTCAAACTCT+TGG - tig0023376:75583-75602 None:intergenic 45.0%
CACAATCATAACCCCCACTT+TGG - tig0023376:75926-75945 None:intergenic 45.0%
CTCAGATGAGGTCGATGTAA+TGG + tig0023376:76076-76095 Msa1408230:intron 45.0%
! TGATCCGGGATTGCCAATTT+TGG + tig0023376:76267-76286 Msa1408230:intron 45.0%
! GATCCGGGATTGCCAATTTT+GGG + tig0023376:76268-76287 Msa1408230:intron 45.0%
CATAAGACGGTAATGCCTGT+AGG - tig0023376:76404-76423 None:intergenic 45.0%
CTACAGGCATTACCGTCTTA+TGG + tig0023376:76402-76421 Msa1408230:intron 45.0%
GTTTCACTGCCTTTCTGCAT+CGG - tig0023376:76452-76471 None:intergenic 45.0%
! CTAGCACCTTGTCATTTGGT+AGG + tig0023376:76809-76828 Msa1408230:intron 45.0%
! ATAGAGTCGGAGATGGGTTT+GGG - tig0023376:77141-77160 None:intergenic 45.0%
! TATAGAGTCGGAGATGGGTT+TGG - tig0023376:77142-77161 None:intergenic 45.0%
TAAAGGGACATCATGGATCC+GGG + tig0023376:77258-77277 Msa1408230:three_prime_UTR 45.0%
CTCTATCATTGAACTCGACC+CGG - tig0023376:77279-77298 None:intergenic 45.0%
! TGTGTGCATCCCCTGTTTTA+AGG + tig0023376:77310-77329 Msa1408230:three_prime_UTR 45.0%
AGAGGCAAGCCTTAAAACAG+GGG - tig0023376:77322-77341 None:intergenic 45.0%
CAAGAGGCAAGCCTTAAAAC+AGG - tig0023376:77324-77343 None:intergenic 45.0%
CTTGACAAGACTGAGTGTGG+AGG - tig0023376:74311-74330 None:intergenic 50.0%
GAAAACTTTAGTGGGGTGGG+AGG - tig0023376:74415-74434 None:intergenic 50.0%
!! CTTGCTGTTGGTGGAGAGTT+TGG + tig0023376:74614-74633 Msa1408230:CDS 50.0%
ATTCACCCCATTGTGTTGGG+TGG + tig0023376:74665-74684 Msa1408230:CDS 50.0%
TTGGTGGAGGACTCAACACA+TGG + tig0023376:75265-75284 Msa1408230:intron 50.0%
AATGGTGACCGTGGCACTTT+GGG - tig0023376:75533-75552 None:intergenic 50.0%
! CCCAAGAGTTTGAAACCGAC+AGG + tig0023376:75579-75598 Msa1408230:intron 50.0%
ACTTTGGCGCACACAGAGAA+AGG - tig0023376:75910-75929 None:intergenic 50.0%
TTTCTCTGTGTGCGCCAAAG+TGG + tig0023376:75909-75928 Msa1408230:intron 50.0%
TTCTCTGTGTGCGCCAAAGT+GGG + tig0023376:75910-75929 Msa1408230:intron 50.0%
! CAGGGGATTAACGGTGTTAG+AGG + tig0023376:75961-75980 Msa1408230:intron 50.0%
! ACGGTGTTAGAGGAAAAGGG+AGG + tig0023376:75971-75990 Msa1408230:intron 50.0%
CATTACCGTCTTATGGGCAC+TGG + tig0023376:76409-76428 Msa1408230:CDS 50.0%
CTAGTACCACCGATGCAGAA+AGG + tig0023376:76440-76459 Msa1408230:CDS 50.0%
TTTGTGTGGCAGATTCCCAC+TGG + tig0023376:76518-76537 Msa1408230:CDS 50.0%
GGTGCTAGCACCTTGTCATT+TGG + tig0023376:76805-76824 Msa1408230:intron 50.0%
GCTTGCTTGCTTGCTTGCCT+TGG - tig0023376:74515-74534 None:intergenic 55.0%
!! CAGGATGCACTTGCTGTTGG+TGG + tig0023376:74605-74624 Msa1408230:intron 55.0%
! CTGGCTATTTGGGGTGGCAA+TGG + tig0023376:74711-74730 Msa1408230:CDS 55.0%
!! GGTGTCTTTGAGGCTGTTGG+TGG + tig0023376:75249-75268 Msa1408230:intron 55.0%
!! GTCTTTGAGGCTGTTGGTGG+AGG + tig0023376:75252-75271 Msa1408230:intron 55.0%
! GTCTTCGTCCCAAAGTGCCA+CGG + tig0023376:75522-75541 Msa1408230:intron 55.0%
CAATGGTGACCGTGGCACTT+TGG - tig0023376:75534-75553 None:intergenic 55.0%
! CAAAGTGCCACGGTCACCAT+TGG + tig0023376:75532-75551 Msa1408230:intron 55.0%
TCTCTGTGTGCGCCAAAGTG+GGG + tig0023376:75911-75930 Msa1408230:intron 55.0%
TGCTGCCAGTGCCCATAAGA+CGG - tig0023376:76417-76436 None:intergenic 55.0%
TCACTGCCTTTCTGCATCGG+TGG - tig0023376:76449-76468 None:intergenic 55.0%
GCTTTACCATCAGGGGCGAC+CGG - tig0023376:74797-74816 None:intergenic 60.0%
AGTACGGCCAATGGTGACCG+TGG - tig0023376:75542-75561 None:intergenic 60.0%
CTCTGTGTGCGCCAAAGTGG+GGG + tig0023376:75912-75931 Msa1408230:intron 60.0%
! GGTGGCAATGGCGCCGAGTT+AGG + tig0023376:74723-74742 Msa1408230:CDS 65.0%
CCATCAGGGGCGACCGGTGC+AGG - tig0023376:74791-74810 None:intergenic 75.0%
! CCTGCACCGGTCGCCCCTGA+TGG + tig0023376:74788-74807 Msa1408230:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0023376 gene 74304 77545 74304 ID=Msa1408230;Name=Msa1408230
tig0023376 mRNA 74304 77545 74304 ID=Msa1408230-mRNA-1;Parent=Msa1408230;Name=Msa1408230-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.5|0.6|1|0.75|0.6|5|312|212
tig0023376 exon 74304 74408 74304 ID=Msa1408230-mRNA-1:exon:25490;Parent=Msa1408230-mRNA-1
tig0023376 exon 74608 74871 74608 ID=Msa1408230-mRNA-1:exon:25491;Parent=Msa1408230-mRNA-1
tig0023376 exon 75177 75267 75177 ID=Msa1408230-mRNA-1:exon:25492;Parent=Msa1408230-mRNA-1
tig0023376 exon 76408 76603 76408 ID=Msa1408230-mRNA-1:exon:25493;Parent=Msa1408230-mRNA-1
tig0023376 exon 77251 77545 77251 ID=Msa1408230-mRNA-1:exon:25494;Parent=Msa1408230-mRNA-1
tig0023376 CDS 74304 74408 74304 ID=Msa1408230-mRNA-1:cds;Parent=Msa1408230-mRNA-1
tig0023376 CDS 74608 74871 74608 ID=Msa1408230-mRNA-1:cds;Parent=Msa1408230-mRNA-1
tig0023376 CDS 75177 75267 75177 ID=Msa1408230-mRNA-1:cds;Parent=Msa1408230-mRNA-1
tig0023376 CDS 76408 76586 76408 ID=Msa1408230-mRNA-1:cds;Parent=Msa1408230-mRNA-1
tig0023376 three_prime_UTR 76587 76603 76587 ID=Msa1408230-mRNA-1:three_prime_utr;Parent=Msa1408230-mRNA-1
tig0023376 three_prime_UTR 77251 77545 77251 ID=Msa1408230-mRNA-1:three_prime_utr;Parent=Msa1408230-mRNA-1
Gene Sequence

>Msa1408230

ATGGCCTCCACACTCAGTCTTGTCAAGCTTCCCATTCTTTCAAGCATCAAGACACGCCAATCAACCTCAAAACATGTTGTTCCACTTCCATCCAAATTCAATATTGATGCACTTGCTGTTGGTGGAGAGTTTGGGATATTTGAAGGAAGAACATTTGCTCTCATTCACCCCATTGTGTTGGGTGGTTTGTTCTTCTATACTCTATATGCTGGCTATTTGGGGTGGCAATGGCGCCGAGTTAGGACTATTCAAAATGATATTAATGAGCTCAAGAAACAACTCAAACCTGCACCGGTCGCCCCTGATGGTAAAGCACTTGAAACTTCACCGCCATCACCTGTTGAACTTCAAATCCAGAAACTTACTGAGGAGAGGAAAGAGCTTATCAAAGGTTCATACAGGGATAAACACTTTAATGCTGGATCCATACTTCTAGGATTTGGTGTCTTTGAGGCTGTTGGCATTACCGTCTTATGGGCACTGGCAGCAGCTCTAGTACCACCGATGCAGAAAGGCAGTGAAACAGCCAGAAATCTTCACATTGCTCTGAATACATTGAATGTTCTTCTCTTTGTGTGGCAGATTCCCACTGGACTTGATATTGTATGGAAAGTGTTTGAGTTCACAAAATGGCCTTGA

Protein sequence

>Msa1408230

MASTLSLVKLPILSSIKTRQSTSKHVVPLPSKFNIDALAVGGEFGIFEGRTFALIHPIVLGGLFFYTLYAGYLGWQWRRVRTIQNDINELKKQLKPAPVAPDGKALETSPPSPVELQIQKLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGITVLWALAAALVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTKWP*