Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331580 | XP_013465569.1 | 95.273 | 275 | 13 | 0 | 1 | 275 | 1 | 275 | 3.51e-167 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331580 | A0A072VN82 | 95.273 | 275 | 13 | 0 | 1 | 275 | 1 | 275 | 1.68e-167 | 474 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026780 | Msa0331580 | 0.808658 | 2.780150e-50 | -8.615850e-47 |
| Msa0040470 | Msa0331580 | 0.829098 | 6.225033e-55 | -8.615850e-47 |
| Msa0058760 | Msa0331580 | 0.805108 | 1.565508e-49 | -8.615850e-47 |
| Msa0091730 | Msa0331580 | 0.802989 | 4.318477e-49 | -8.615850e-47 |
| Msa0097570 | Msa0331580 | 0.801956 | 7.048400e-49 | -8.615850e-47 |
| Msa0122530 | Msa0331580 | 0.806857 | 6.708835e-50 | -8.615850e-47 |
| Msa0178840 | Msa0331580 | -0.800781 | 1.226600e-48 | -8.615850e-47 |
| Msa0192870 | Msa0331580 | 0.823444 | 1.380696e-53 | -8.615850e-47 |
| Msa0197170 | Msa0331580 | 0.808338 | 3.252752e-50 | -8.615850e-47 |
| Msa0226260 | Msa0331580 | 0.915250 | 7.359259e-85 | -8.615850e-47 |
| Msa0256140 | Msa0331580 | 0.806296 | 8.811388e-50 | -8.615850e-47 |
| Msa0273400 | Msa0331580 | 0.810632 | 1.046489e-50 | -8.615850e-47 |
| Msa0304730 | Msa0331580 | 0.910940 | 1.067033e-82 | -8.615850e-47 |
| Msa0313660 | Msa0331580 | 0.802128 | 6.498020e-49 | -8.615850e-47 |
| Msa0320230 | Msa0331580 | 0.820956 | 5.215051e-53 | -8.615850e-47 |
| Msa0331580 | Msa0345050 | 0.808137 | 3.591011e-50 | -8.615850e-47 |
| Msa0331580 | Msa0375790 | 0.826120 | 3.230081e-54 | -8.615850e-47 |
| Msa0331580 | Msa0383870 | -0.828888 | 6.996349e-55 | -8.615850e-47 |
| Msa0331580 | Msa0417790 | -0.803573 | 3.268864e-49 | -8.615850e-47 |
| Msa0331580 | Msa0433050 | 0.806509 | 7.945828e-50 | -8.615850e-47 |
| Msa0331580 | Msa0436260 | -0.807481 | 4.950184e-50 | -8.615850e-47 |
| Msa0331580 | Msa0436270 | -0.815906 | 7.272784e-52 | -8.615850e-47 |
| Msa0331580 | Msa0490320 | 0.804912 | 1.720337e-49 | -8.615850e-47 |
| Msa0331580 | Msa0500610 | -0.832222 | 1.069467e-55 | -8.615850e-47 |
| Msa0331580 | Msa0500700 | -0.809324 | 2.001966e-50 | -8.615850e-47 |
| Msa0331580 | Msa0512950 | -0.804735 | 1.872927e-49 | -8.615850e-47 |
| Msa0331580 | Msa0524670 | 0.818058 | 2.389053e-52 | -8.615850e-47 |
| Msa0331580 | Msa0548420 | 0.811235 | 7.746904e-51 | -8.615850e-47 |
| Msa0331580 | Msa0590620 | -0.822450 | 2.353694e-53 | -8.615850e-47 |
| Msa0331580 | Msa0603310 | 0.803518 | 3.356085e-49 | -8.615850e-47 |
| Msa0331580 | Msa0626920 | 0.829878 | 4.023184e-55 | -8.615850e-47 |
| Msa0331580 | Msa0644340 | 0.801292 | 9.647085e-49 | -8.615850e-47 |
| Msa0331580 | Msa0744640 | 0.835791 | 1.366269e-56 | -8.615850e-47 |
| Msa0331580 | Msa0841730 | 0.836903 | 7.123645e-57 | -8.615850e-47 |
| Msa0331580 | Msa0873910 | 0.825551 | 4.407019e-54 | -8.615850e-47 |
| Msa0331580 | Msa0946110 | 0.918344 | 1.749547e-86 | -8.615850e-47 |
| Msa0331580 | Msa0969380 | 0.809526 | 1.811615e-50 | -8.615850e-47 |
| Msa0331580 | Msa0969590 | 0.803083 | 4.129725e-49 | -8.615850e-47 |
| Msa0331580 | Msa0969720 | 0.817031 | 4.071536e-52 | -8.615850e-47 |
| Msa0331580 | Msa1074550 | 0.826240 | 3.024479e-54 | -8.615850e-47 |
| Msa0331580 | Msa1080130 | 0.835488 | 1.629689e-56 | -8.615850e-47 |
| Msa0331580 | Msa1080610 | -0.804685 | 1.918561e-49 | -8.615850e-47 |
| Msa0331580 | Msa1080680 | -0.805399 | 1.360431e-49 | -8.615850e-47 |
| Msa0331580 | Msa1126320 | -0.800370 | 1.487907e-48 | -8.615850e-47 |
| Msa0331580 | Msa1167150 | -0.808555 | 2.924155e-50 | -8.615850e-47 |
| Msa0331580 | Msa1167310 | 0.842682 | 2.227408e-58 | -8.615850e-47 |
| Msa0331580 | Msa1184230 | 0.835226 | 1.898687e-56 | -8.615850e-47 |
| Msa0331580 | Msa1197230 | 0.834273 | 3.297421e-56 | -8.615850e-47 |
| Msa0331580 | Msa1202800 | 0.825732 | 3.992012e-54 | -8.615850e-47 |
| Msa0331580 | Msa1207920 | -0.817502 | 3.189287e-52 | -8.615850e-47 |
| Msa0331580 | Msa1255210 | 0.827918 | 1.199473e-54 | -8.615850e-47 |
| Msa0331580 | Msa1295650 | 0.819244 | 1.286050e-52 | -8.615850e-47 |
| Msa0331580 | Msa1331570 | -0.807023 | 6.189504e-50 | -8.615850e-47 |
| Msa0331580 | Msa1345540 | -0.810474 | 1.132010e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331580 | MtrunA17_Chr2g0333081 | 95.273 | 275 | 13 | 0 | 1 | 275 | 1 | 275 | 3.23e-171 | 474 |
| Msa0331580 | MtrunA17_Chr4g0063891 | 40.927 | 259 | 128 | 5 | 1 | 235 | 1 | 258 | 1.40e-51 | 170 |
| Msa0331580 | MtrunA17_Chr7g0262061 | 49.180 | 122 | 59 | 1 | 121 | 242 | 211 | 329 | 4.24e-34 | 126 |
| Msa0331580 | MtrunA17_Chr5g0411051 | 52.941 | 102 | 48 | 0 | 136 | 237 | 119 | 220 | 7.88e-33 | 120 |
| Msa0331580 | MtrunA17_Chr7g0262541 | 46.721 | 122 | 59 | 2 | 131 | 246 | 226 | 347 | 2.36e-30 | 116 |
| Msa0331580 | MtrunA17_Chr1g0186111 | 38.255 | 149 | 86 | 2 | 101 | 249 | 96 | 238 | 1.33e-25 | 103 |
| Msa0331580 | MtrunA17_Chr1g0186111 | 44.545 | 110 | 60 | 1 | 133 | 241 | 266 | 375 | 2.23e-21 | 92.4 |
| Msa0331580 | MtrunA17_Chr4g0003301 | 61.538 | 65 | 25 | 0 | 166 | 230 | 6 | 70 | 2.52e-24 | 93.2 |
| Msa0331580 | MtrunA17_Chr3g0104511 | 40.816 | 98 | 58 | 0 | 139 | 236 | 399 | 496 | 3.80e-19 | 86.7 |
| Msa0331580 | MtrunA17_Chr4g0003311 | 43.787 | 169 | 76 | 4 | 1 | 167 | 1 | 152 | 4.63e-19 | 82.4 |
| Msa0331580 | MtrunA17_Chr5g0436741 | 38.318 | 107 | 66 | 0 | 137 | 243 | 296 | 402 | 1.12e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331580 | AT5G20190.1 | 62.626 | 99 | 37 | 0 | 139 | 237 | 156 | 254 | 2.27e-40 | 142 |
| Msa0331580 | AT1G80130.1 | 41.852 | 270 | 113 | 7 | 1 | 235 | 1 | 261 | 1.45e-39 | 140 |
| Msa0331580 | AT4G32340.1 | 59.000 | 100 | 40 | 1 | 139 | 237 | 110 | 209 | 1.73e-35 | 127 |
| Msa0331580 | AT4G17940.1 | 58.333 | 96 | 40 | 0 | 142 | 237 | 153 | 248 | 6.65e-35 | 127 |
| Msa0331580 | AT2G29670.1 | 40.650 | 123 | 71 | 1 | 131 | 253 | 412 | 532 | 4.53e-22 | 95.9 |
| Msa0331580 | AT2G29670.2 | 40.650 | 123 | 71 | 1 | 131 | 253 | 412 | 532 | 4.53e-22 | 95.9 |
| Msa0331580 | AT1G04530.1 | 46.316 | 95 | 50 | 1 | 142 | 236 | 124 | 217 | 1.78e-20 | 89.4 |
| Msa0331580 | AT1G04530.1 | 28.571 | 126 | 68 | 3 | 136 | 239 | 185 | 310 | 8.21e-11 | 62.0 |
| Msa0331580 | AT1G07280.3 | 41.346 | 104 | 61 | 0 | 138 | 241 | 434 | 537 | 1.24e-19 | 88.6 |
| Msa0331580 | AT1G07280.1 | 41.346 | 104 | 61 | 0 | 138 | 241 | 434 | 537 | 1.24e-19 | 88.6 |
| Msa0331580 | AT1G07280.2 | 41.346 | 104 | 61 | 0 | 138 | 241 | 434 | 537 | 1.24e-19 | 88.6 |
| Msa0331580 | AT3G47080.1 | 36.735 | 98 | 62 | 0 | 139 | 236 | 400 | 497 | 7.50e-14 | 71.6 |
Find 55 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGTAAAAGAGAATTATT+TGG | 0.185235 | 2_4:-47558517 | None:intergenic |
| CTTGGACTTGCAAGTGTTCT+AGG | 0.227205 | 2_4:-47558160 | None:intergenic |
| CTCTCTATGCTGATTTAATA+TGG | 0.230159 | 2_4:+47559078 | Msa0331580:CDS |
| TTTAACAGCCCTATCAAAAT+AGG | 0.241375 | 2_4:-47559132 | None:intergenic |
| GTATGTTGAAAGAGCCATTT+TGG | 0.262466 | 2_4:+47559028 | Msa0331580:CDS |
| GGTTTGCTTCAATCATGTTT+TGG | 0.294320 | 2_4:-47558495 | None:intergenic |
| AAGTAGGTTCGTGGAGATTA+TGG | 0.302005 | 2_4:+47558993 | Msa0331580:intron |
| TAGTTTAGATAAGCAAGTTT+TGG | 0.332832 | 2_4:+47558291 | Msa0331580:CDS |
| ATCACCAGGGCTAGCCAAAA+TGG | 0.341771 | 2_4:-47559042 | None:intergenic |
| AGTAATGGGTGGTGGTGGTA+TGG | 0.351405 | 2_4:+47558357 | Msa0331580:CDS |
| AATGGTAGTGGAAGAGATTC+TGG | 0.357707 | 2_4:+47558412 | Msa0331580:CDS |
| GATTTCTCTTACCAATCATC+TGG | 0.360855 | 2_4:-47559161 | None:intergenic |
| TTCTTTCCTTCCACACTCAA+TGG | 0.370876 | 2_4:+47558102 | Msa0331580:CDS |
| GTAATGGGTGGTGGTGGTAT+GGG | 0.372856 | 2_4:+47558358 | Msa0331580:CDS |
| CAAGTAAAAGAGAATTATTT+GGG | 0.377661 | 2_4:-47558516 | None:intergenic |
| TGGTGATTGAGTTCTTGTTC+AGG | 0.381932 | 2_4:-47558133 | None:intergenic |
| CTTCATATGCAAAATTCCTA+TGG | 0.391469 | 2_4:+47560153 | Msa0331580:CDS |
| GAAAATAGTTCTCTCGTTGA+AGG | 0.392335 | 2_4:-47558262 | None:intergenic |
| GGTGGTATGGGGTGTGATGG+TGG | 0.402385 | 2_4:+47558370 | Msa0331580:CDS |
| GGTGGTGGTATGGGGTGTGA+TGG | 0.405771 | 2_4:+47558367 | Msa0331580:CDS |
| AAGTTGCAAACTTTAGTAAT+GGG | 0.406381 | 2_4:+47558343 | Msa0331580:CDS |
| AGAGATTCTGGTGGTGGAAA+TGG | 0.409069 | 2_4:+47558424 | Msa0331580:CDS |
| TGTGATGGTGGAAGTATTTG+TGG | 0.443120 | 2_4:+47558382 | Msa0331580:CDS |
| AAAGTTGCAAACTTTAGTAA+TGG | 0.445266 | 2_4:+47558342 | Msa0331580:CDS |
| AGTATTTGTGGTGGTTGTAA+TGG | 0.447043 | 2_4:+47558394 | Msa0331580:CDS |
| TCTGGTGGTGGAAATGGAAA+TGG | 0.452290 | 2_4:+47558430 | Msa0331580:CDS |
| AAAGATCAGGTGAAAGTGTA+TGG | 0.469919 | 2_4:-47560226 | None:intergenic |
| GGTGATTGAGTTCTTGTTCA+GGG | 0.477042 | 2_4:-47558132 | None:intergenic |
| TAATGGGTGGTGGTGGTATG+GGG | 0.499472 | 2_4:+47558359 | Msa0331580:CDS |
| TGTGGTGGTTGTAATGGTAG+TGG | 0.516522 | 2_4:+47558400 | Msa0331580:CDS |
| TTAAAAGTGATCCAGATGAT+TGG | 0.517931 | 2_4:+47559150 | Msa0331580:CDS |
| TTATCACATCAGCTATGTCC+TGG | 0.518059 | 2_4:+47560130 | Msa0331580:intron |
| CAATTTGAAAAGTAGGTTCG+TGG | 0.525753 | 2_4:+47558984 | Msa0331580:intron |
| CATCTTCTTCAGCGTCCCAT+AGG | 0.538742 | 2_4:-47560169 | None:intergenic |
| GGAAGGAAAGAACTTGGAAT+TGG | 0.544342 | 2_4:-47558091 | None:intergenic |
| ACTTTAGTAATGGGTGGTGG+TGG | 0.545271 | 2_4:+47558352 | Msa0331580:CDS |
| AGTGGAAGAGATTCTGGTGG+TGG | 0.546901 | 2_4:+47558418 | Msa0331580:CDS |
| AAGATTCCATTGAGTGTGGA+AGG | 0.563863 | 2_4:-47558108 | None:intergenic |
| GATAAAGCATCAGCATCACC+AGG | 0.566361 | 2_4:-47559056 | None:intergenic |
| TTCATATGCAAAATTCCTAT+GGG | 0.567504 | 2_4:+47560154 | Msa0331580:CDS |
| GTGATTGAGTTCTTGTTCAG+GGG | 0.572118 | 2_4:-47558131 | None:intergenic |
| GAGTGTGGAAGGAAAGAACT+TGG | 0.576678 | 2_4:-47558097 | None:intergenic |
| GACTTGCAAGTGTTCTAGGA+AGG | 0.580355 | 2_4:-47558156 | None:intergenic |
| GGGGAAGATTCCATTGAGTG+TGG | 0.597244 | 2_4:-47558112 | None:intergenic |
| CAAACTTTAGTAATGGGTGG+TGG | 0.599262 | 2_4:+47558349 | Msa0331580:CDS |
| AATGGATGGGAAAATAATGA+TGG | 0.600399 | 2_4:+47558448 | Msa0331580:CDS |
| TTGCAAACTTTAGTAATGGG+TGG | 0.605342 | 2_4:+47558346 | Msa0331580:CDS |
| TGGTGGAAATGGAAATGGAT+GGG | 0.611749 | 2_4:+47558435 | Msa0331580:CDS |
| TGGTGATGATTCTTAAGAAG+TGG | 0.624905 | 2_4:-47558199 | None:intergenic |
| TTGCAAGTGTTCTAGGAAGG+TGG | 0.634929 | 2_4:-47558153 | None:intergenic |
| GTGGTGGAAATGGAAATGGA+TGG | 0.643918 | 2_4:+47558434 | Msa0331580:CDS |
| GATGGTGGAAGTATTTGTGG+TGG | 0.659019 | 2_4:+47558385 | Msa0331580:CDS |
| TGGAGATTATGGTAAAGCAG+AGG | 0.689369 | 2_4:+47559004 | Msa0331580:CDS |
| ATAAAGCATCAGCATCACCA+GGG | 0.728077 | 2_4:-47559055 | None:intergenic |
| GGTAGTGGAAGAGATTCTGG+TGG | 0.752433 | 2_4:+47558415 | Msa0331580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACACAAATAAAATTATTT+AGG | - | chr2_4:47559629-47559648 | None:intergenic | 10.0% |
| !! | AATTTCATCATAATATTAAT+TGG | - | chr2_4:47559710-47559729 | None:intergenic | 10.0% |
| !! | AAACACAAATAAAATTATTT+AGG | - | chr2_4:47559629-47559648 | None:intergenic | 10.0% |
| !! | AATTTCATCATAATATTAAT+TGG | - | chr2_4:47559710-47559729 | None:intergenic | 10.0% |
| !! | AAAATATCAAACTTGAAATT+TGG | + | chr2_4:47558717-47558736 | Msa0331580:intron | 15.0% |
| !! | ACAATATATAAATGAAGATT+AGG | + | chr2_4:47558850-47558869 | Msa0331580:intron | 15.0% |
| !!! | TAGGTAAAATATTTTGTAAT+TGG | + | chr2_4:47558874-47558893 | Msa0331580:intron | 15.0% |
| !! | TGTATTGTGATTAAAATATA+TGG | + | chr2_4:47558937-47558956 | Msa0331580:intron | 15.0% |
| !! | TATGATGAAATTAATTAACA+AGG | + | chr2_4:47559718-47559737 | Msa0331580:intron | 15.0% |
| !! | ATGATGAAATTAATTAACAA+GGG | + | chr2_4:47559719-47559738 | Msa0331580:intron | 15.0% |
| !! | AAAAAAAATCCTACAAAAAA+CGG | + | chr2_4:47559754-47559773 | Msa0331580:intron | 15.0% |
| !! | TAATTAGATTATCTATCATT+TGG | + | chr2_4:47559875-47559894 | Msa0331580:intron | 15.0% |
| !! | AATTAGATTATCTATCATTT+GGG | + | chr2_4:47559876-47559895 | Msa0331580:intron | 15.0% |
| !! | TATAACATCAAATAAAAATC+AGG | - | chr2_4:47560081-47560100 | None:intergenic | 15.0% |
| !! | AAAATATCAAACTTGAAATT+TGG | + | chr2_4:47558717-47558736 | Msa0331580:intron | 15.0% |
| !! | ACAATATATAAATGAAGATT+AGG | + | chr2_4:47558850-47558869 | Msa0331580:intron | 15.0% |
| !!! | TAGGTAAAATATTTTGTAAT+TGG | + | chr2_4:47558874-47558893 | Msa0331580:intron | 15.0% |
| !! | TGTATTGTGATTAAAATATA+TGG | + | chr2_4:47558937-47558956 | Msa0331580:intron | 15.0% |
| !! | TATGATGAAATTAATTAACA+AGG | + | chr2_4:47559718-47559737 | Msa0331580:intron | 15.0% |
| !! | ATGATGAAATTAATTAACAA+GGG | + | chr2_4:47559719-47559738 | Msa0331580:intron | 15.0% |
| !! | AAAAAAAATCCTACAAAAAA+CGG | + | chr2_4:47559754-47559773 | Msa0331580:intron | 15.0% |
| !! | TAATTAGATTATCTATCATT+TGG | + | chr2_4:47559875-47559894 | Msa0331580:intron | 15.0% |
| !! | AATTAGATTATCTATCATTT+GGG | + | chr2_4:47559876-47559895 | Msa0331580:intron | 15.0% |
| !! | TATAACATCAAATAAAAATC+AGG | - | chr2_4:47560081-47560100 | None:intergenic | 15.0% |
| !! | CAAGTAAAAGAGAATTATTT+GGG | - | chr2_4:47558519-47558538 | None:intergenic | 20.0% |
| !! | TTAAGTTATGTGTTGAAATA+TGG | - | chr2_4:47558685-47558704 | None:intergenic | 20.0% |
| !! | TAATGTTCAATTTGAAAAGT+AGG | + | chr2_4:47558977-47558996 | Msa0331580:intron | 20.0% |
| !! | ATAAAGTTCATAGATGAATT+AGG | - | chr2_4:47559235-47559254 | None:intergenic | 20.0% |
| !! | AGAACAAAATATGTTACAAA+AGG | - | chr2_4:47559447-47559466 | None:intergenic | 20.0% |
| !! | ATAAACATGAGAAATACTTA+GGG | + | chr2_4:47559471-47559490 | Msa0331580:intron | 20.0% |
| !! | AAAAAAATCCTACAAAAAAC+GGG | + | chr2_4:47559755-47559774 | Msa0331580:intron | 20.0% |
| !! | TTAGTAATTAGTTGTTAGAT+TGG | - | chr2_4:47559970-47559989 | None:intergenic | 20.0% |
| !! | TTTCTTTCCAAAAAAATACA+AGG | + | chr2_4:47560043-47560062 | Msa0331580:intron | 20.0% |
| !! | TTCTTTCCAAAAAAATACAA+GGG | + | chr2_4:47560044-47560063 | Msa0331580:intron | 20.0% |
| !! | CAAGTAAAAGAGAATTATTT+GGG | - | chr2_4:47558519-47558538 | None:intergenic | 20.0% |
| !! | TTAAGTTATGTGTTGAAATA+TGG | - | chr2_4:47558685-47558704 | None:intergenic | 20.0% |
| !! | TAATGTTCAATTTGAAAAGT+AGG | + | chr2_4:47558977-47558996 | Msa0331580:intron | 20.0% |
| !! | ATAAAGTTCATAGATGAATT+AGG | - | chr2_4:47559235-47559254 | None:intergenic | 20.0% |
| !! | AGAACAAAATATGTTACAAA+AGG | - | chr2_4:47559447-47559466 | None:intergenic | 20.0% |
| !! | ATAAACATGAGAAATACTTA+GGG | + | chr2_4:47559471-47559490 | Msa0331580:intron | 20.0% |
| !! | AAAAAAATCCTACAAAAAAC+GGG | + | chr2_4:47559755-47559774 | Msa0331580:intron | 20.0% |
| !! | TTAGTAATTAGTTGTTAGAT+TGG | - | chr2_4:47559970-47559989 | None:intergenic | 20.0% |
| !! | TTTCTTTCCAAAAAAATACA+AGG | + | chr2_4:47560043-47560062 | Msa0331580:intron | 20.0% |
| !! | TTCTTTCCAAAAAAATACAA+GGG | + | chr2_4:47560044-47560063 | Msa0331580:intron | 20.0% |
| !!! | ATTTTTGTTCTGTTTCTTCT+TGG | - | chr2_4:47558222-47558241 | None:intergenic | 25.0% |
| !! | TAGTTTAGATAAGCAAGTTT+TGG | + | chr2_4:47558291-47558310 | Msa0331580:CDS | 25.0% |
| ! | AAAGTTGCAAACTTTAGTAA+TGG | + | chr2_4:47558342-47558361 | Msa0331580:CDS | 25.0% |
| ! | AAGTTGCAAACTTTAGTAAT+GGG | + | chr2_4:47558343-47558362 | Msa0331580:CDS | 25.0% |
| ! | CCAAGTAAAAGAGAATTATT+TGG | - | chr2_4:47558520-47558539 | None:intergenic | 25.0% |
| !! | CCAAATAATTCTCTTTTACT+TGG | + | chr2_4:47558517-47558536 | Msa0331580:CDS | 25.0% |
| !!! | TTATGCTAAGTTTTTGAAAG+AGG | + | chr2_4:47558543-47558562 | Msa0331580:CDS | 25.0% |
| ! | CCAAAAGTTTAAGTCTAATT+CGG | + | chr2_4:47558809-47558828 | Msa0331580:intron | 25.0% |
| ! | ATATAAATGAAGATTAGGCT+AGG | + | chr2_4:47558855-47558874 | Msa0331580:intron | 25.0% |
| ! | AGAGAAATCTTAAATCTATG+TGG | + | chr2_4:47559175-47559194 | Msa0331580:intron | 25.0% |
| ! | ATATAAACCAAATGATACAG+TGG | + | chr2_4:47559362-47559381 | Msa0331580:intron | 25.0% |
| ! | AAGTATTTCTCATGTTTATG+CGG | - | chr2_4:47559470-47559489 | None:intergenic | 25.0% |
| ! | CATAAACATGAGAAATACTT+AGG | + | chr2_4:47559470-47559489 | Msa0331580:intron | 25.0% |
| ! | AAACACAAATGTAAAAGGTT+TGG | + | chr2_4:47559496-47559515 | Msa0331580:intron | 25.0% |
| ! | TGTGCAAATTTGTATATGTA+GGG | - | chr2_4:47559675-47559694 | None:intergenic | 25.0% |
| ! | ATGTGCAAATTTGTATATGT+AGG | - | chr2_4:47559676-47559695 | None:intergenic | 25.0% |
| !!! | AACAAACCCTTGTATTTTTT+TGG | - | chr2_4:47560053-47560072 | None:intergenic | 25.0% |
| ! | TTCATATGCAAAATTCCTAT+GGG | + | chr2_4:47560154-47560173 | Msa0331580:CDS | 25.0% |
| !!! | ATTTTTGTTCTGTTTCTTCT+TGG | - | chr2_4:47558222-47558241 | None:intergenic | 25.0% |
| !! | TAGTTTAGATAAGCAAGTTT+TGG | + | chr2_4:47558291-47558310 | Msa0331580:CDS | 25.0% |
| ! | AAAGTTGCAAACTTTAGTAA+TGG | + | chr2_4:47558342-47558361 | Msa0331580:CDS | 25.0% |
| ! | AAGTTGCAAACTTTAGTAAT+GGG | + | chr2_4:47558343-47558362 | Msa0331580:CDS | 25.0% |
| ! | CCAAGTAAAAGAGAATTATT+TGG | - | chr2_4:47558520-47558539 | None:intergenic | 25.0% |
| !! | CCAAATAATTCTCTTTTACT+TGG | + | chr2_4:47558517-47558536 | Msa0331580:CDS | 25.0% |
| !!! | TTATGCTAAGTTTTTGAAAG+AGG | + | chr2_4:47558543-47558562 | Msa0331580:CDS | 25.0% |
| ! | CCAAAAGTTTAAGTCTAATT+CGG | + | chr2_4:47558809-47558828 | Msa0331580:intron | 25.0% |
| ! | ATATAAATGAAGATTAGGCT+AGG | + | chr2_4:47558855-47558874 | Msa0331580:intron | 25.0% |
| ! | AGAGAAATCTTAAATCTATG+TGG | + | chr2_4:47559175-47559194 | Msa0331580:intron | 25.0% |
| ! | ATATAAACCAAATGATACAG+TGG | + | chr2_4:47559362-47559381 | Msa0331580:intron | 25.0% |
| ! | AAGTATTTCTCATGTTTATG+CGG | - | chr2_4:47559470-47559489 | None:intergenic | 25.0% |
| ! | CATAAACATGAGAAATACTT+AGG | + | chr2_4:47559470-47559489 | Msa0331580:intron | 25.0% |
| ! | AAACACAAATGTAAAAGGTT+TGG | + | chr2_4:47559496-47559515 | Msa0331580:intron | 25.0% |
| ! | TGTGCAAATTTGTATATGTA+GGG | - | chr2_4:47559675-47559694 | None:intergenic | 25.0% |
| ! | ATGTGCAAATTTGTATATGT+AGG | - | chr2_4:47559676-47559695 | None:intergenic | 25.0% |
| !!! | AACAAACCCTTGTATTTTTT+TGG | - | chr2_4:47560053-47560072 | None:intergenic | 25.0% |
| ! | TTCATATGCAAAATTCCTAT+GGG | + | chr2_4:47560154-47560173 | Msa0331580:CDS | 25.0% |
| AATGGATGGGAAAATAATGA+TGG | + | chr2_4:47558448-47558467 | Msa0331580:CDS | 30.0% | |
| ! | CCGAATTAGACTTAAACTTT+TGG | - | chr2_4:47558812-47558831 | None:intergenic | 30.0% |
| !! | CTCTCTATGCTGATTTAATA+TGG | + | chr2_4:47559078-47559097 | Msa0331580:CDS | 30.0% |
| TTTAACAGCCCTATCAAAAT+AGG | - | chr2_4:47559135-47559154 | None:intergenic | 30.0% | |
| TTAAAAGTGATCCAGATGAT+TGG | + | chr2_4:47559150-47559169 | Msa0331580:CDS | 30.0% | |
| GAGAATGTATGTATACATAG+AGG | - | chr2_4:47559213-47559232 | None:intergenic | 30.0% | |
| GGGATAAACACAAATGTAAA+AGG | + | chr2_4:47559491-47559510 | Msa0331580:intron | 30.0% | |
| TAATTAACAAGGGAACAACA+AGG | + | chr2_4:47559729-47559748 | Msa0331580:intron | 30.0% | |
| AATTAACAAGGGAACAACAA+GGG | + | chr2_4:47559730-47559749 | Msa0331580:intron | 30.0% | |
| !!! | TATATAGACCCGTTTTTTGT+AGG | - | chr2_4:47559766-47559785 | None:intergenic | 30.0% |
| ! | GATTATCTATCATTTGGGAT+TGG | + | chr2_4:47559881-47559900 | Msa0331580:intron | 30.0% |
| TAGCTCAACTAATTTACGAT+AGG | + | chr2_4:47559905-47559924 | Msa0331580:intron | 30.0% | |
| AGCTCAACTAATTTACGATA+GGG | + | chr2_4:47559906-47559925 | Msa0331580:intron | 30.0% | |
| !!! | AGACGTTTTGCTTTATTTTC+TGG | + | chr2_4:47560014-47560033 | Msa0331580:intron | 30.0% |
| CTTCATATGCAAAATTCCTA+TGG | + | chr2_4:47560153-47560172 | Msa0331580:CDS | 30.0% | |
| AATGGATGGGAAAATAATGA+TGG | + | chr2_4:47558448-47558467 | Msa0331580:CDS | 30.0% | |
| ! | CCGAATTAGACTTAAACTTT+TGG | - | chr2_4:47558812-47558831 | None:intergenic | 30.0% |
| !! | CTCTCTATGCTGATTTAATA+TGG | + | chr2_4:47559078-47559097 | Msa0331580:CDS | 30.0% |
| TTTAACAGCCCTATCAAAAT+AGG | - | chr2_4:47559135-47559154 | None:intergenic | 30.0% | |
| TTAAAAGTGATCCAGATGAT+TGG | + | chr2_4:47559150-47559169 | Msa0331580:CDS | 30.0% | |
| GAGAATGTATGTATACATAG+AGG | - | chr2_4:47559213-47559232 | None:intergenic | 30.0% | |
| GGGATAAACACAAATGTAAA+AGG | + | chr2_4:47559491-47559510 | Msa0331580:intron | 30.0% | |
| TAATTAACAAGGGAACAACA+AGG | + | chr2_4:47559729-47559748 | Msa0331580:intron | 30.0% | |
| AATTAACAAGGGAACAACAA+GGG | + | chr2_4:47559730-47559749 | Msa0331580:intron | 30.0% | |
| !!! | TATATAGACCCGTTTTTTGT+AGG | - | chr2_4:47559766-47559785 | None:intergenic | 30.0% |
| ! | GATTATCTATCATTTGGGAT+TGG | + | chr2_4:47559881-47559900 | Msa0331580:intron | 30.0% |
| TAGCTCAACTAATTTACGAT+AGG | + | chr2_4:47559905-47559924 | Msa0331580:intron | 30.0% | |
| AGCTCAACTAATTTACGATA+GGG | + | chr2_4:47559906-47559925 | Msa0331580:intron | 30.0% | |
| !!! | AGACGTTTTGCTTTATTTTC+TGG | + | chr2_4:47560014-47560033 | Msa0331580:intron | 30.0% |
| CTTCATATGCAAAATTCCTA+TGG | + | chr2_4:47560153-47560172 | Msa0331580:CDS | 30.0% | |
| !!! | GGTGCAGATTTTTTATGTCT+TGG | - | chr2_4:47558181-47558200 | None:intergenic | 35.0% |
| ! | TGGTGATGATTCTTAAGAAG+TGG | - | chr2_4:47558202-47558221 | None:intergenic | 35.0% |
| GAAAATAGTTCTCTCGTTGA+AGG | - | chr2_4:47558265-47558284 | None:intergenic | 35.0% | |
| !!! | CAAGTTTTGGATCATGAAGA+AGG | + | chr2_4:47558304-47558323 | Msa0331580:CDS | 35.0% |
| GAAGAAGGTGGTAAAAAAGT+AGG | + | chr2_4:47558319-47558338 | Msa0331580:CDS | 35.0% | |
| ! | TTGCAAACTTTAGTAATGGG+TGG | + | chr2_4:47558346-47558365 | Msa0331580:CDS | 35.0% |
| AGTATTTGTGGTGGTTGTAA+TGG | + | chr2_4:47558394-47558413 | Msa0331580:CDS | 35.0% | |
| !! | GGTTTGCTTCAATCATGTTT+TGG | - | chr2_4:47558498-47558517 | None:intergenic | 35.0% |
| ATAACATGATCAAGCTCAAG+TGG | - | chr2_4:47558604-47558623 | None:intergenic | 35.0% | |
| GAATTCATATTGCATGCAGT+CGG | - | chr2_4:47558777-47558796 | None:intergenic | 35.0% | |
| CAATTTGAAAAGTAGGTTCG+TGG | + | chr2_4:47558984-47559003 | Msa0331580:intron | 35.0% | |
| ! | GTATGTTGAAAGAGCCATTT+TGG | + | chr2_4:47559028-47559047 | Msa0331580:CDS | 35.0% |
| !!! | AGCTGAAGCCTATTTTGATA+GGG | + | chr2_4:47559124-47559143 | Msa0331580:CDS | 35.0% |
| GATTTCTCTTACCAATCATC+TGG | - | chr2_4:47559164-47559183 | None:intergenic | 35.0% | |
| TAGAGACACTATATGTGACA+TGG | + | chr2_4:47559271-47559290 | Msa0331580:intron | 35.0% | |
| TCTTGATCCACTGTATCATT+TGG | - | chr2_4:47559372-47559391 | None:intergenic | 35.0% | |
| TACGATAGGGTCAAAAAAGT+TGG | + | chr2_4:47559919-47559938 | Msa0331580:intron | 35.0% | |
| !! | GGCTCTTATCAGTTTTATGT+TGG | - | chr2_4:47560208-47560227 | None:intergenic | 35.0% |
| ! | AAAGATCAGGTGAAAGTGTA+TGG | - | chr2_4:47560229-47560248 | None:intergenic | 35.0% |
| ! | CTTTCACCTGATCTTTTTCT+AGG | + | chr2_4:47560233-47560252 | Msa0331580:CDS | 35.0% |
| TTAGCTCCTAGAAAAAGATC+AGG | - | chr2_4:47560242-47560261 | None:intergenic | 35.0% | |
| !! | GATCTTTTTCTAGGAGCTAA+TGG | + | chr2_4:47560242-47560261 | Msa0331580:CDS | 35.0% |
| !!! | GGTGCAGATTTTTTATGTCT+TGG | - | chr2_4:47558181-47558200 | None:intergenic | 35.0% |
| ! | TGGTGATGATTCTTAAGAAG+TGG | - | chr2_4:47558202-47558221 | None:intergenic | 35.0% |
| GAAAATAGTTCTCTCGTTGA+AGG | - | chr2_4:47558265-47558284 | None:intergenic | 35.0% | |
| !!! | CAAGTTTTGGATCATGAAGA+AGG | + | chr2_4:47558304-47558323 | Msa0331580:CDS | 35.0% |
| GAAGAAGGTGGTAAAAAAGT+AGG | + | chr2_4:47558319-47558338 | Msa0331580:CDS | 35.0% | |
| ! | TTGCAAACTTTAGTAATGGG+TGG | + | chr2_4:47558346-47558365 | Msa0331580:CDS | 35.0% |
| AGTATTTGTGGTGGTTGTAA+TGG | + | chr2_4:47558394-47558413 | Msa0331580:CDS | 35.0% | |
| !! | GGTTTGCTTCAATCATGTTT+TGG | - | chr2_4:47558498-47558517 | None:intergenic | 35.0% |
| ATAACATGATCAAGCTCAAG+TGG | - | chr2_4:47558604-47558623 | None:intergenic | 35.0% | |
| GAATTCATATTGCATGCAGT+CGG | - | chr2_4:47558777-47558796 | None:intergenic | 35.0% | |
| CAATTTGAAAAGTAGGTTCG+TGG | + | chr2_4:47558984-47559003 | Msa0331580:intron | 35.0% | |
| ! | GTATGTTGAAAGAGCCATTT+TGG | + | chr2_4:47559028-47559047 | Msa0331580:CDS | 35.0% |
| !!! | AGCTGAAGCCTATTTTGATA+GGG | + | chr2_4:47559124-47559143 | Msa0331580:CDS | 35.0% |
| GATTTCTCTTACCAATCATC+TGG | - | chr2_4:47559164-47559183 | None:intergenic | 35.0% | |
| TAGAGACACTATATGTGACA+TGG | + | chr2_4:47559271-47559290 | Msa0331580:intron | 35.0% | |
| TCTTGATCCACTGTATCATT+TGG | - | chr2_4:47559372-47559391 | None:intergenic | 35.0% | |
| TACGATAGGGTCAAAAAAGT+TGG | + | chr2_4:47559919-47559938 | Msa0331580:intron | 35.0% | |
| !! | GGCTCTTATCAGTTTTATGT+TGG | - | chr2_4:47560208-47560227 | None:intergenic | 35.0% |
| ! | AAAGATCAGGTGAAAGTGTA+TGG | - | chr2_4:47560229-47560248 | None:intergenic | 35.0% |
| ! | CTTTCACCTGATCTTTTTCT+AGG | + | chr2_4:47560233-47560252 | Msa0331580:CDS | 35.0% |
| TTAGCTCCTAGAAAAAGATC+AGG | - | chr2_4:47560242-47560261 | None:intergenic | 35.0% | |
| !! | GATCTTTTTCTAGGAGCTAA+TGG | + | chr2_4:47560242-47560261 | Msa0331580:CDS | 35.0% |
| GGAAGGAAAGAACTTGGAAT+TGG | - | chr2_4:47558094-47558113 | None:intergenic | 40.0% | |
| TTCTTTCCTTCCACACTCAA+TGG | + | chr2_4:47558102-47558121 | Msa0331580:CDS | 40.0% | |
| AAGATTCCATTGAGTGTGGA+AGG | - | chr2_4:47558111-47558130 | None:intergenic | 40.0% | |
| GTGATTGAGTTCTTGTTCAG+GGG | - | chr2_4:47558134-47558153 | None:intergenic | 40.0% | |
| GGTGATTGAGTTCTTGTTCA+GGG | - | chr2_4:47558135-47558154 | None:intergenic | 40.0% | |
| TGGTGATTGAGTTCTTGTTC+AGG | - | chr2_4:47558136-47558155 | None:intergenic | 40.0% | |
| !! | GTTTTGGATCATGAAGAAGG+TGG | + | chr2_4:47558307-47558326 | Msa0331580:CDS | 40.0% |
| !! | CAAACTTTAGTAATGGGTGG+TGG | + | chr2_4:47558349-47558368 | Msa0331580:CDS | 40.0% |
| !! | TGTGATGGTGGAAGTATTTG+TGG | + | chr2_4:47558382-47558401 | Msa0331580:CDS | 40.0% |
| !! | AATGGTAGTGGAAGAGATTC+TGG | + | chr2_4:47558412-47558431 | Msa0331580:CDS | 40.0% |
| TGGTGGAAATGGAAATGGAT+GGG | + | chr2_4:47558435-47558454 | Msa0331580:CDS | 40.0% | |
| ! | GTCGGTACATTGATGATTGT+TGG | - | chr2_4:47558759-47558778 | None:intergenic | 40.0% |
| AAGTAGGTTCGTGGAGATTA+TGG | + | chr2_4:47558993-47559012 | Msa0331580:intron | 40.0% | |
| TGGAGATTATGGTAAAGCAG+AGG | + | chr2_4:47559004-47559023 | Msa0331580:CDS | 40.0% | |
| ! | ATAAAGCATCAGCATCACCA+GGG | - | chr2_4:47559058-47559077 | None:intergenic | 40.0% |
| !!! | GAGCTGAAGCCTATTTTGAT+AGG | + | chr2_4:47559123-47559142 | Msa0331580:CDS | 40.0% |
| !!! | CCTGATAGCTGGTCTTTTAA+GGG | - | chr2_4:47559816-47559835 | None:intergenic | 40.0% |
| !!! | TCCTGATAGCTGGTCTTTTA+AGG | - | chr2_4:47559817-47559836 | None:intergenic | 40.0% |
| GATAGGGTCAAAAAAGTTGG+AGG | + | chr2_4:47559922-47559941 | Msa0331580:intron | 40.0% | |
| TTATCACATCAGCTATGTCC+TGG | + | chr2_4:47560130-47560149 | Msa0331580:intron | 40.0% | |
| ! | GGAATTTTGCATATGAAGCC+AGG | - | chr2_4:47560151-47560170 | None:intergenic | 40.0% |
| GGAAGGAAAGAACTTGGAAT+TGG | - | chr2_4:47558094-47558113 | None:intergenic | 40.0% | |
| TTCTTTCCTTCCACACTCAA+TGG | + | chr2_4:47558102-47558121 | Msa0331580:CDS | 40.0% | |
| AAGATTCCATTGAGTGTGGA+AGG | - | chr2_4:47558111-47558130 | None:intergenic | 40.0% | |
| GTGATTGAGTTCTTGTTCAG+GGG | - | chr2_4:47558134-47558153 | None:intergenic | 40.0% | |
| GGTGATTGAGTTCTTGTTCA+GGG | - | chr2_4:47558135-47558154 | None:intergenic | 40.0% | |
| TGGTGATTGAGTTCTTGTTC+AGG | - | chr2_4:47558136-47558155 | None:intergenic | 40.0% | |
| !! | GTTTTGGATCATGAAGAAGG+TGG | + | chr2_4:47558307-47558326 | Msa0331580:CDS | 40.0% |
| !! | CAAACTTTAGTAATGGGTGG+TGG | + | chr2_4:47558349-47558368 | Msa0331580:CDS | 40.0% |
| !! | TGTGATGGTGGAAGTATTTG+TGG | + | chr2_4:47558382-47558401 | Msa0331580:CDS | 40.0% |
| !! | AATGGTAGTGGAAGAGATTC+TGG | + | chr2_4:47558412-47558431 | Msa0331580:CDS | 40.0% |
| TGGTGGAAATGGAAATGGAT+GGG | + | chr2_4:47558435-47558454 | Msa0331580:CDS | 40.0% | |
| ! | GTCGGTACATTGATGATTGT+TGG | - | chr2_4:47558759-47558778 | None:intergenic | 40.0% |
| AAGTAGGTTCGTGGAGATTA+TGG | + | chr2_4:47558993-47559012 | Msa0331580:intron | 40.0% | |
| TGGAGATTATGGTAAAGCAG+AGG | + | chr2_4:47559004-47559023 | Msa0331580:CDS | 40.0% | |
| ! | ATAAAGCATCAGCATCACCA+GGG | - | chr2_4:47559058-47559077 | None:intergenic | 40.0% |
| !!! | GAGCTGAAGCCTATTTTGAT+AGG | + | chr2_4:47559123-47559142 | Msa0331580:CDS | 40.0% |
| !!! | CCTGATAGCTGGTCTTTTAA+GGG | - | chr2_4:47559816-47559835 | None:intergenic | 40.0% |
| !!! | TCCTGATAGCTGGTCTTTTA+AGG | - | chr2_4:47559817-47559836 | None:intergenic | 40.0% |
| GATAGGGTCAAAAAAGTTGG+AGG | + | chr2_4:47559922-47559941 | Msa0331580:intron | 40.0% | |
| TTATCACATCAGCTATGTCC+TGG | + | chr2_4:47560130-47560149 | Msa0331580:intron | 40.0% | |
| ! | GGAATTTTGCATATGAAGCC+AGG | - | chr2_4:47560151-47560170 | None:intergenic | 40.0% |
| GAGTGTGGAAGGAAAGAACT+TGG | - | chr2_4:47558100-47558119 | None:intergenic | 45.0% | |
| !! | TTGCAAGTGTTCTAGGAAGG+TGG | - | chr2_4:47558156-47558175 | None:intergenic | 45.0% |
| !! | GACTTGCAAGTGTTCTAGGA+AGG | - | chr2_4:47558159-47558178 | None:intergenic | 45.0% |
| CTTGGACTTGCAAGTGTTCT+AGG | - | chr2_4:47558163-47558182 | None:intergenic | 45.0% | |
| !! | ACTTTAGTAATGGGTGGTGG+TGG | + | chr2_4:47558352-47558371 | Msa0331580:CDS | 45.0% |
| !! | GATGGTGGAAGTATTTGTGG+TGG | + | chr2_4:47558385-47558404 | Msa0331580:CDS | 45.0% |
| TGTGGTGGTTGTAATGGTAG+TGG | + | chr2_4:47558400-47558419 | Msa0331580:CDS | 45.0% | |
| !! | AGAGATTCTGGTGGTGGAAA+TGG | + | chr2_4:47558424-47558443 | Msa0331580:CDS | 45.0% |
| !! | TCTGGTGGTGGAAATGGAAA+TGG | + | chr2_4:47558430-47558449 | Msa0331580:CDS | 45.0% |
| ! | GTGGTGGAAATGGAAATGGA+TGG | + | chr2_4:47558434-47558453 | Msa0331580:CDS | 45.0% |
| ATTAATTCCCCGCATTCACG+CGG | + | chr2_4:47558622-47558641 | Msa0331580:intron | 45.0% | |
| AGGTGGTTGTTGATCGAGAT+AGG | + | chr2_4:47558654-47558673 | Msa0331580:intron | 45.0% | |
| ! | GATAAAGCATCAGCATCACC+AGG | - | chr2_4:47559059-47559078 | None:intergenic | 45.0% |
| !!! | GATAGCTGGTCTTTTAAGGG+TGG | - | chr2_4:47559813-47559832 | None:intergenic | 45.0% |
| CCCTTAAAAGACCAGCTATC+AGG | + | chr2_4:47559813-47559832 | Msa0331580:intron | 45.0% | |
| AGACCAGCTATCAGGAACAA+AGG | + | chr2_4:47559821-47559840 | Msa0331580:intron | 45.0% | |
| CTTCCTTTGTTCCTGATAGC+TGG | - | chr2_4:47559827-47559846 | None:intergenic | 45.0% | |
| ! | AGTTGTTAGATTGGTCCGCA+GGG | - | chr2_4:47559961-47559980 | None:intergenic | 45.0% |
| ! | TAGTTGTTAGATTGGTCCGC+AGG | - | chr2_4:47559962-47559981 | None:intergenic | 45.0% |
| GAGTGTGGAAGGAAAGAACT+TGG | - | chr2_4:47558100-47558119 | None:intergenic | 45.0% | |
| !! | TTGCAAGTGTTCTAGGAAGG+TGG | - | chr2_4:47558156-47558175 | None:intergenic | 45.0% |
| !! | GACTTGCAAGTGTTCTAGGA+AGG | - | chr2_4:47558159-47558178 | None:intergenic | 45.0% |
| CTTGGACTTGCAAGTGTTCT+AGG | - | chr2_4:47558163-47558182 | None:intergenic | 45.0% | |
| !! | ACTTTAGTAATGGGTGGTGG+TGG | + | chr2_4:47558352-47558371 | Msa0331580:CDS | 45.0% |
| !! | GATGGTGGAAGTATTTGTGG+TGG | + | chr2_4:47558385-47558404 | Msa0331580:CDS | 45.0% |
| TGTGGTGGTTGTAATGGTAG+TGG | + | chr2_4:47558400-47558419 | Msa0331580:CDS | 45.0% | |
| !! | AGAGATTCTGGTGGTGGAAA+TGG | + | chr2_4:47558424-47558443 | Msa0331580:CDS | 45.0% |
| !! | TCTGGTGGTGGAAATGGAAA+TGG | + | chr2_4:47558430-47558449 | Msa0331580:CDS | 45.0% |
| ! | GTGGTGGAAATGGAAATGGA+TGG | + | chr2_4:47558434-47558453 | Msa0331580:CDS | 45.0% |
| ATTAATTCCCCGCATTCACG+CGG | + | chr2_4:47558622-47558641 | Msa0331580:intron | 45.0% | |
| AGGTGGTTGTTGATCGAGAT+AGG | + | chr2_4:47558654-47558673 | Msa0331580:intron | 45.0% | |
| ! | GATAAAGCATCAGCATCACC+AGG | - | chr2_4:47559059-47559078 | None:intergenic | 45.0% |
| !!! | GATAGCTGGTCTTTTAAGGG+TGG | - | chr2_4:47559813-47559832 | None:intergenic | 45.0% |
| CCCTTAAAAGACCAGCTATC+AGG | + | chr2_4:47559813-47559832 | Msa0331580:intron | 45.0% | |
| AGACCAGCTATCAGGAACAA+AGG | + | chr2_4:47559821-47559840 | Msa0331580:intron | 45.0% | |
| CTTCCTTTGTTCCTGATAGC+TGG | - | chr2_4:47559827-47559846 | None:intergenic | 45.0% | |
| ! | AGTTGTTAGATTGGTCCGCA+GGG | - | chr2_4:47559961-47559980 | None:intergenic | 45.0% |
| ! | TAGTTGTTAGATTGGTCCGC+AGG | - | chr2_4:47559962-47559981 | None:intergenic | 45.0% |
| !!! | TTTTTATTTTTAAGATAAAT+TGG | + | chr2_4:47559537-47559556 | Msa0331580:intron | 5.0% |
| !!! | TTATTTAATTTTTTTTATTG+TGG | + | chr2_4:47559595-47559614 | Msa0331580:intron | 5.0% |
| !!! | TTTTTATTTTTAAGATAAAT+TGG | + | chr2_4:47559537-47559556 | Msa0331580:intron | 5.0% |
| !!! | TTATTTAATTTTTTTTATTG+TGG | + | chr2_4:47559595-47559614 | Msa0331580:intron | 5.0% |
| GGGGAAGATTCCATTGAGTG+TGG | - | chr2_4:47558115-47558134 | None:intergenic | 50.0% | |
| !! | AGTAATGGGTGGTGGTGGTA+TGG | + | chr2_4:47558357-47558376 | Msa0331580:CDS | 50.0% |
| !! | GTAATGGGTGGTGGTGGTAT+GGG | + | chr2_4:47558358-47558377 | Msa0331580:CDS | 50.0% |
| !! | TAATGGGTGGTGGTGGTATG+GGG | + | chr2_4:47558359-47558378 | Msa0331580:CDS | 50.0% |
| !! | GGTAGTGGAAGAGATTCTGG+TGG | + | chr2_4:47558415-47558434 | Msa0331580:CDS | 50.0% |
| AGTGGAAGAGATTCTGGTGG+TGG | + | chr2_4:47558418-47558437 | Msa0331580:CDS | 50.0% | |
| ATGTGCTAACCGCGTGAATG+CGG | - | chr2_4:47558634-47558653 | None:intergenic | 50.0% | |
| CATTCACGCGGTTAGCACAT+AGG | + | chr2_4:47558634-47558653 | Msa0331580:intron | 50.0% | |
| !! | ATCACCAGGGCTAGCCAAAA+TGG | - | chr2_4:47559045-47559064 | None:intergenic | 50.0% |
| TGGTCCGCAGGGTTTGAATT+CGG | - | chr2_4:47559950-47559969 | None:intergenic | 50.0% | |
| CATCTTCTTCAGCGTCCCAT+AGG | - | chr2_4:47560172-47560191 | None:intergenic | 50.0% | |
| GGGGAAGATTCCATTGAGTG+TGG | - | chr2_4:47558115-47558134 | None:intergenic | 50.0% | |
| !! | AGTAATGGGTGGTGGTGGTA+TGG | + | chr2_4:47558357-47558376 | Msa0331580:CDS | 50.0% |
| !! | GTAATGGGTGGTGGTGGTAT+GGG | + | chr2_4:47558358-47558377 | Msa0331580:CDS | 50.0% |
| !! | TAATGGGTGGTGGTGGTATG+GGG | + | chr2_4:47558359-47558378 | Msa0331580:CDS | 50.0% |
| !! | GGTAGTGGAAGAGATTCTGG+TGG | + | chr2_4:47558415-47558434 | Msa0331580:CDS | 50.0% |
| AGTGGAAGAGATTCTGGTGG+TGG | + | chr2_4:47558418-47558437 | Msa0331580:CDS | 50.0% | |
| ATGTGCTAACCGCGTGAATG+CGG | - | chr2_4:47558634-47558653 | None:intergenic | 50.0% | |
| CATTCACGCGGTTAGCACAT+AGG | + | chr2_4:47558634-47558653 | Msa0331580:intron | 50.0% | |
| !! | ATCACCAGGGCTAGCCAAAA+TGG | - | chr2_4:47559045-47559064 | None:intergenic | 50.0% |
| TGGTCCGCAGGGTTTGAATT+CGG | - | chr2_4:47559950-47559969 | None:intergenic | 50.0% | |
| CATCTTCTTCAGCGTCCCAT+AGG | - | chr2_4:47560172-47560191 | None:intergenic | 50.0% | |
| TGTGCTAACCGCGTGAATGC+GGG | - | chr2_4:47558633-47558652 | None:intergenic | 55.0% | |
| TCACGCGGTTAGCACATAGG+TGG | + | chr2_4:47558637-47558656 | Msa0331580:intron | 55.0% | |
| !!! | AGAGCCATTTTGGCTAGCCC+TGG | + | chr2_4:47559038-47559057 | Msa0331580:CDS | 55.0% |
| GGACCCGAATTCAAACCCTG+CGG | + | chr2_4:47559943-47559962 | Msa0331580:intron | 55.0% | |
| GGTCCGCAGGGTTTGAATTC+GGG | - | chr2_4:47559949-47559968 | None:intergenic | 55.0% | |
| TGTGCTAACCGCGTGAATGC+GGG | - | chr2_4:47558633-47558652 | None:intergenic | 55.0% | |
| TCACGCGGTTAGCACATAGG+TGG | + | chr2_4:47558637-47558656 | Msa0331580:intron | 55.0% | |
| !!! | AGAGCCATTTTGGCTAGCCC+TGG | + | chr2_4:47559038-47559057 | Msa0331580:CDS | 55.0% |
| GGACCCGAATTCAAACCCTG+CGG | + | chr2_4:47559943-47559962 | Msa0331580:intron | 55.0% | |
| GGTCCGCAGGGTTTGAATTC+GGG | - | chr2_4:47559949-47559968 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTATGGGGTGTGA+TGG | + | chr2_4:47558367-47558386 | Msa0331580:CDS | 60.0% |
| GGTGGTATGGGGTGTGATGG+TGG | + | chr2_4:47558370-47558389 | Msa0331580:CDS | 60.0% | |
| GTGCTAACCGCGTGAATGCG+GGG | - | chr2_4:47558632-47558651 | None:intergenic | 60.0% | |
| ! | GGTGGTGGTATGGGGTGTGA+TGG | + | chr2_4:47558367-47558386 | Msa0331580:CDS | 60.0% |
| GGTGGTATGGGGTGTGATGG+TGG | + | chr2_4:47558370-47558389 | Msa0331580:CDS | 60.0% | |
| GTGCTAACCGCGTGAATGCG+GGG | - | chr2_4:47558632-47558651 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 47558067 | 47560298 | 47558067 | ID=Msa0331580;Name=Msa0331580 |
| chr2_4 | mRNA | 47558067 | 47560298 | 47558067 | ID=Msa0331580-mRNA-1;Parent=Msa0331580;Name=Msa0331580-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|275 |
| chr2_4 | exon | 47558067 | 47558564 | 47558067 | ID=Msa0331580-mRNA-1:exon:14288;Parent=Msa0331580-mRNA-1 |
| chr2_4 | exon | 47558999 | 47559171 | 47558999 | ID=Msa0331580-mRNA-1:exon:14289;Parent=Msa0331580-mRNA-1 |
| chr2_4 | exon | 47560142 | 47560298 | 47560142 | ID=Msa0331580-mRNA-1:exon:14290;Parent=Msa0331580-mRNA-1 |
| chr2_4 | CDS | 47558067 | 47558564 | 47558067 | ID=Msa0331580-mRNA-1:cds;Parent=Msa0331580-mRNA-1 |
| chr2_4 | CDS | 47558999 | 47559171 | 47558999 | ID=Msa0331580-mRNA-1:cds;Parent=Msa0331580-mRNA-1 |
| chr2_4 | CDS | 47560142 | 47560298 | 47560142 | ID=Msa0331580-mRNA-1:cds;Parent=Msa0331580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
