AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0476600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476600 MtrunA17_Chr3g0136281 98.089 157 3 0 3 159 74 230 1.16e-107 306
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476600 AT2G26340.1 60.625 160 60 2 3 159 94 253 1.64e-57 180
Msa0476600 AT2G26340.2 58.750 160 60 3 3 159 94 250 5.65e-53 169

Find 46 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATCGGCAGAGGGAAAAT+TGG 0.292643 3_3:+80438933 None:intergenic
ACAGTTCCAGATCAAGGATT+TGG 0.307790 3_3:-80439357 Msa0476600:CDS
TCTCTGTTTCCACGTCTTCC+CGG 0.329619 3_3:+80437505 None:intergenic
ATCACCTGTCCAGAGCAATA+AGG 0.367512 3_3:+80438081 None:intergenic
TGCCGATCTCTACTTCGCTC+TGG 0.368041 3_3:-80438920 Msa0476600:CDS
AGATCGGCAGAGGGAAAATT+GGG 0.369482 3_3:+80438934 None:intergenic
CAGTTCCAGATCAAGGATTT+GGG 0.422160 3_3:-80439356 Msa0476600:intron
TCACCTGTCCAGAGCAATAA+GGG 0.422481 3_3:+80438082 None:intergenic
CAGTTCTGCCCTTATTGCTC+TGG 0.425958 3_3:-80438090 Msa0476600:CDS
ATTGATTTAACGGAGGCATC+AGG 0.434244 3_3:+80438125 None:intergenic
ACCGTCAGACGTGTTAAGTA+AGG 0.459060 3_3:-80437556 Msa0476600:CDS
GCCGATCTCTACTTCGCTCT+GGG 0.469537 3_3:-80438919 Msa0476600:CDS
CTGACGGTACCGTTTGTAAG+AGG 0.470661 3_3:+80437571 None:intergenic
TAGCTGATTCATACTTGGAC+CGG 0.479874 3_3:-80437524 Msa0476600:CDS
GGTTATAGCTGATTCATACT+TGG 0.482554 3_3:-80437529 Msa0476600:CDS
CTGCCCTTATTGCTCTGGAC+AGG 0.483084 3_3:-80438085 Msa0476600:intron
CATTACCCAAATCCTTGATC+TGG 0.483632 3_3:+80439351 None:intergenic
ATTCTGTTTCTGAAGGTCAC+TGG 0.496213 3_3:-80438189 Msa0476600:intron
AGACGTGGAAACAGAGAACT+TGG 0.501675 3_3:-80437499 Msa0476600:CDS
GAAACAGAGAACTTGGACCC+TGG 0.506908 3_3:-80437492 Msa0476600:CDS
TGGTTTCAGCCTCTTACAAA+CGG 0.513105 3_3:-80437580 Msa0476600:intron
CACGCAGAAGCAAGGAATCA+AGG 0.516697 3_3:+80438162 None:intergenic
AGCGAAGTAGAGATCGGCAG+AGG 0.521610 3_3:+80438924 None:intergenic
CCTCACACAGTTCCAGATCA+AGG 0.524145 3_3:-80439363 Msa0476600:CDS
GATTCTAATTGCTTTAAACC+AGG 0.530046 3_3:+80437474 None:intergenic
CCCTTACTTAACACGTCTGA+CGG 0.543771 3_3:+80437555 None:intergenic
TATGCTTCTGACAGTGGCAA+TGG 0.552161 3_3:-80438350 Msa0476600:CDS
ATTCTAATTGCTTTAAACCA+GGG 0.552324 3_3:+80437475 None:intergenic
TGCCTCCGTTAAATCAATGA+AGG 0.566338 3_3:-80438120 Msa0476600:CDS
TCTTGAAGCACGCAGAAGCA+AGG 0.570877 3_3:+80438154 None:intergenic
GCCCAGAGCGAAGTAGAGAT+CGG 0.581943 3_3:+80438918 None:intergenic
AGCTGATTCATACTTGGACC+GGG 0.583181 3_3:-80437523 Msa0476600:CDS
AGACGTGTTAAGTAAGGGAA+AGG 0.583469 3_3:-80437550 Msa0476600:CDS
CCTTGATCTGGAACTGTGTG+AGG 0.597626 3_3:+80439363 None:intergenic
GGATGCAGATGCAGATGCAA+AGG 0.601417 3_3:+80437324 None:intergenic
GCGAAGTAGAGATCGGCAGA+GGG 0.604621 3_3:+80438925 None:intergenic
ATACTTGGACCGGGAAGACG+TGG 0.614514 3_3:-80437514 Msa0476600:CDS
CCGTCAGACGTGTTAAGTAA+GGG 0.623574 3_3:-80437555 Msa0476600:CDS
TTTACACGAAGAGATGCTGC+AGG 0.626649 3_3:+80438896 None:intergenic
TGCCTTCATTGATTTAACGG+AGG 0.631585 3_3:+80438118 None:intergenic
AACTGTGTGAGGATTACAGC+TGG 0.642570 3_3:+80439374 None:intergenic
GCGCAATATGCTTCTGACAG+TGG 0.644065 3_3:-80438356 Msa0476600:CDS
CTGTTTCTGAAGGTCACTGG+AGG 0.644931 3_3:-80438186 Msa0476600:intron
GCTGGTACGTAAGTCTCCAG+AGG 0.686740 3_3:+80439392 None:intergenic
ACAATGTTGATGATTGTCTG+AGG 0.713768 3_3:-80438313 Msa0476600:intron
GATCGGCAGAGGGAAAATTG+GGG 0.716033 3_3:+80438935 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTAATTAAACTTTA+GGG + chr3_3:80437856-80437875 None:intergenic 10.0%
!!! GTTTGATTTAATTAAACTTT+AGG + chr3_3:80437857-80437876 None:intergenic 15.0%
!! TTATTTGAATGATACTTTAT+TGG - chr3_3:80437974-80437993 Msa0476600:intron 15.0%
!! TCAAAAAAAAATTACGAAAT+AGG + chr3_3:80438061-80438080 None:intergenic 15.0%
!!! TATTTCGTAATTTTTTTTTG+AGG - chr3_3:80438060-80438079 Msa0476600:intron 15.0%
!! ATGATACAATTAGTATTAAA+CGG - chr3_3:80438351-80438370 Msa0476600:CDS 15.0%
!!! TATTTTCGTAATAATTTTTG+CGG + chr3_3:80439988-80440007 None:intergenic 15.0%
!!! AAATGTTTTCACAAAATAAA+CGG + chr3_3:80440312-80440331 None:intergenic 15.0%
!! CAATAAAAATGTCAAAATAA+TGG + chr3_3:80440469-80440488 None:intergenic 15.0%
!! TCATTCTTTCTTAAATTGTT+CGG + chr3_3:80437363-80437382 None:intergenic 20.0%
!! CATTCAAATAATGTCTAAAA+TGG + chr3_3:80437965-80437984 None:intergenic 20.0%
!!! AATAACATTGCATTCTAAAA+GGG + chr3_3:80438031-80438050 None:intergenic 20.0%
!! TTATCCATATCAAAAATACT+GGG + chr3_3:80438497-80438516 None:intergenic 20.0%
!! ATTATCCATATCAAAAATAC+TGG + chr3_3:80438498-80438517 None:intergenic 20.0%
!!! TTGCTTTTTATAATTTGTAC+TGG - chr3_3:80438741-80438760 Msa0476600:intron 20.0%
!!! TGCTTTTTATAATTTGTACT+GGG - chr3_3:80438742-80438761 Msa0476600:intron 20.0%
!! TTACGTATTTATATCATACT+TGG - chr3_3:80439001-80439020 Msa0476600:intron 20.0%
!! TATTACAGAAAAAACTTTAG+AGG - chr3_3:80439293-80439312 Msa0476600:intron 20.0%
!! ATTACAGAAAAAACTTTAGA+GGG - chr3_3:80439294-80439313 Msa0476600:intron 20.0%
!! AAGTGTATATATACTTAAGT+CGG - chr3_3:80439593-80439612 Msa0476600:intron 20.0%
!! ACAAATATCATATCAACAAT+GGG + chr3_3:80439780-80439799 None:intergenic 20.0%
!! AACAAATATCATATCAACAA+TGG + chr3_3:80439781-80439800 None:intergenic 20.0%
!! AAAGTAAATGATGATAAACA+TGG + chr3_3:80439825-80439844 None:intergenic 20.0%
!!! ATTTTCGTAATAATTTTTGC+GGG + chr3_3:80439987-80440006 None:intergenic 20.0%
!!! GTTTTTCATAATCATAAAAC+TGG + chr3_3:80440032-80440051 None:intergenic 20.0%
!!! AATGTTTTCACAAAATAAAC+GGG + chr3_3:80440311-80440330 None:intergenic 20.0%
!!! GAACAATTGTTTACATTTTT+TGG + chr3_3:80440495-80440514 None:intergenic 20.0%
!!! AAAATGTTTTCGCAAAATAA+TGG - chr3_3:80440578-80440597 Msa0476600:intron 20.0%
!!! AAATGTTTTCGCAAAATAAT+GGG - chr3_3:80440579-80440598 Msa0476600:intron 20.0%
!! ATATTAAGAATATCATCAGA+TGG + chr3_3:80440654-80440673 None:intergenic 20.0%
!!! TGATATTCTTAATATGCTTT+TGG - chr3_3:80440659-80440678 Msa0476600:intron 20.0%
! ATGTTCATCTTAAGTTTCAA+GGG + chr3_3:80437393-80437412 None:intergenic 25.0%
! AATGTTCATCTTAAGTTTCA+AGG + chr3_3:80437394-80437413 None:intergenic 25.0%
! AAATCACAAATCCAAAACAA+GGG + chr3_3:80437596-80437615 None:intergenic 25.0%
!! GAATCCAATTTGTTTAATCA+AGG - chr3_3:80437648-80437667 Msa0476600:intron 25.0%
! TAAGCCTTGATTAAACAAAT+TGG + chr3_3:80437655-80437674 None:intergenic 25.0%
!!! AATTAAACTTTAGGGCTATT+TGG + chr3_3:80437848-80437867 None:intergenic 25.0%
!! GGAAAACTAAGATAAGTTTT+TGG + chr3_3:80437895-80437914 None:intergenic 25.0%
!! TCAAATAATGTCTAAAATGG+AGG + chr3_3:80437962-80437981 None:intergenic 25.0%
! GAATAACATTGCATTCTAAA+AGG + chr3_3:80438032-80438051 None:intergenic 25.0%
! GATAAAGTGCAAACATATTA+GGG - chr3_3:80438097-80438116 Msa0476600:CDS 25.0%
! TTCTCAAAGAATGAACAAAA+AGG + chr3_3:80438168-80438187 None:intergenic 25.0%
!! ACATATAAGCTATACTTTTC+CGG - chr3_3:80438305-80438324 Msa0476600:intron 25.0%
! AACCAAGACTTATTTCAATT+AGG - chr3_3:80438406-80438425 Msa0476600:intron 25.0%
! ACCAAGACTTATTTCAATTA+GGG - chr3_3:80438407-80438426 Msa0476600:intron 25.0%
!!! TTGCATTTTGACATTAGTTT+GGG - chr3_3:80438446-80438465 Msa0476600:intron 25.0%
!!! ATTTCCCAGTATTTTTGATA+TGG - chr3_3:80438490-80438509 Msa0476600:intron 25.0%
!!! TTTTTGTTATGATCACAAGT+AGG - chr3_3:80438536-80438555 Msa0476600:intron 25.0%
! AGCTACTCTAATTTAATTCA+AGG + chr3_3:80438714-80438733 None:intergenic 25.0%
! GAATCAGAATTATCATTCTT+TGG + chr3_3:80438811-80438830 None:intergenic 25.0%
!! TATTTGTAAACCTCTGATTT+TGG - chr3_3:80438976-80438995 Msa0476600:intron 25.0%
!! TATATCATACTTGGTTCTTA+TGG - chr3_3:80439010-80439029 Msa0476600:intron 25.0%
! TCTTCTTTCATTGGTAAATT+TGG - chr3_3:80439100-80439119 Msa0476600:intron 25.0%
! TTCTGTAATAGTAGAAAGAA+AGG + chr3_3:80439283-80439302 None:intergenic 25.0%
!! GAAAAACTTTTAACATCCAA+AGG + chr3_3:80439455-80439474 None:intergenic 25.0%
!!! TCTTTTATTTTTCCTTCCAT+GGG + chr3_3:80439655-80439674 None:intergenic 25.0%
!!! TTTTGCCTTCATTGATTTAA+CGG + chr3_3:80440147-80440166 None:intergenic 25.0%
! CTTATTATGTACAGGAAAAA+GGG + chr3_3:80440228-80440247 None:intergenic 25.0%
!! ATTCTAATTGCTTTAAACCA+GGG + chr3_3:80440787-80440806 None:intergenic 25.0%
CATTGTTGATGTATGATCTT+CGG - chr3_3:80437410-80437429 Msa0476600:three_prime_UTR 30.0%
!! TTTTTCATACACCCTTGTTT+TGG - chr3_3:80437582-80437601 Msa0476600:intron 30.0%
CAAATCACAAATCCAAAACA+AGG + chr3_3:80437597-80437616 None:intergenic 30.0%
AACAAATTGGATTCCAAACA+GGG + chr3_3:80437642-80437661 None:intergenic 30.0%
AAACAAATTGGATTCCAAAC+AGG + chr3_3:80437643-80437662 None:intergenic 30.0%
! GCTATTATTATTAGCTCTTC+CGG - chr3_3:80437768-80437787 Msa0476600:intron 30.0%
GGATAAAGTGCAAACATATT+AGG - chr3_3:80438096-80438115 Msa0476600:CDS 30.0%
TAATAACATGACAGAGAACA+AGG + chr3_3:80438125-80438144 None:intergenic 30.0%
AAAAAGACATGCATGATCAT+AGG - chr3_3:80438195-80438214 Msa0476600:intron 30.0%
!! GTTGCATTTTGACATTAGTT+TGG - chr3_3:80438445-80438464 Msa0476600:intron 30.0%
CTAAAGATATGATACAACGT+AGG + chr3_3:80438690-80438709 None:intergenic 30.0%
TCAGAATTATCATTCTTTGG+AGG + chr3_3:80438808-80438827 None:intergenic 30.0%
ATCAGAGGTTTACAAATATC+TGG + chr3_3:80438974-80438993 None:intergenic 30.0%
AATATTCGAGCAGTAAGTAA+AGG - chr3_3:80439384-80439403 Msa0476600:CDS 30.0%
CAAAAAAATGAATTCCCTGT+TGG - chr3_3:80439492-80439511 Msa0476600:intron 30.0%
!!! CTCTTTTATTTTTCCTTCCA+TGG + chr3_3:80439656-80439675 None:intergenic 30.0%
!! TTTCTGAAATCTGCATGATA+TGG + chr3_3:80439702-80439721 None:intergenic 30.0%
! TCTATTGTTCTATGCTGTTT+GGG + chr3_3:80439728-80439747 None:intergenic 30.0%
ATCTATTGTTCTATGCTGTT+TGG + chr3_3:80439729-80439748 None:intergenic 30.0%
CCACTAATTAACTTTCATAC+AGG + chr3_3:80439862-80439881 None:intergenic 30.0%
CCTGTATGAAAGTTAATTAG+TGG - chr3_3:80439859-80439878 Msa0476600:intron 30.0%
AGAAACAGAATTCTTCAGTT+GGG + chr3_3:80440061-80440080 None:intergenic 30.0%
CCTTATTATGTACAGGAAAA+AGG + chr3_3:80440229-80440248 None:intergenic 30.0%
! CCTTTTTCCTGTACATAATA+AGG - chr3_3:80440226-80440245 Msa0476600:intron 30.0%
TCCTGTACATAATAAGGATT+TGG - chr3_3:80440232-80440251 Msa0476600:intron 30.0%
TCCAAATCCTTATTATGTAC+AGG + chr3_3:80440236-80440255 None:intergenic 30.0%
! TTTGAAACGAATCATTGTGA+TGG - chr3_3:80440391-80440410 Msa0476600:intron 30.0%
! GATTCTAATTGCTTTAAACC+AGG + chr3_3:80440788-80440807 None:intergenic 30.0%
TGTTCCTAATAGTGTCCATT+TGG - chr3_3:80437444-80437463 Msa0476600:three_prime_UTR 35.0%
GATTCCAAACAGGGAATAAT+GGG + chr3_3:80437633-80437652 None:intergenic 35.0%
CTTAAGTTTATCTACTTGCC+CGG + chr3_3:80437816-80437835 None:intergenic 35.0%
GTACTTGCCCATTAAGAATT+GGG - chr3_3:80437934-80437953 Msa0476600:intron 35.0%
AAAGTACGTCTACGCTATAT+AGG - chr3_3:80437999-80438018 Msa0476600:intron 35.0%
! AAGGAGTATGTACTTCGATT+CGG + chr3_3:80438149-80438168 None:intergenic 35.0%
CATGCATGATCATAGGATAT+TGG - chr3_3:80438202-80438221 Msa0476600:intron 35.0%
CATGATCATAGGATATTGGT+GGG - chr3_3:80438206-80438225 Msa0476600:intron 35.0%
ATGATCATAGGATATTGGTG+GGG - chr3_3:80438207-80438226 Msa0476600:intron 35.0%
GTACATGATTCGTTTGATGA+TGG - chr3_3:80438232-80438251 Msa0476600:intron 35.0%
GCCCTAATTGAAATAAGTCT+TGG + chr3_3:80438411-80438430 None:intergenic 35.0%
ATACGTAACACCAAAATCAG+AGG + chr3_3:80438989-80439008 None:intergenic 35.0%
! ACGCGTTTTTCTTCTTTCAT+TGG - chr3_3:80439091-80439110 Msa0476600:intron 35.0%
TGCATTCGTTTATCAGAATG+AGG + chr3_3:80439126-80439145 None:intergenic 35.0%
AAGAGGAACTCAGAAGTTAA+AGG + chr3_3:80439413-80439432 None:intergenic 35.0%
! TTGGACTGACTCAATCAAAA+GGG + chr3_3:80439531-80439550 None:intergenic 35.0%
! TTTGGACTGACTCAATCAAA+AGG + chr3_3:80439532-80439551 None:intergenic 35.0%
AATGAAGTCTCAGATTGCTT+TGG + chr3_3:80439550-80439569 None:intergenic 35.0%
CTGCATGATATGGAAGAAAT+TGG + chr3_3:80439692-80439711 None:intergenic 35.0%
!! GTGGTTCACAAACTTTTTCT+AGG - chr3_3:80439878-80439897 Msa0476600:intron 35.0%
!! ACAATGTTGATGATTGTCTG+AGG - chr3_3:80439946-80439965 Msa0476600:intron 35.0%
CAGAAACAGAATTCTTCAGT+TGG + chr3_3:80440062-80440081 None:intergenic 35.0%
!! CTGAAGAATTCTGTTTCTGA+AGG - chr3_3:80440063-80440082 Msa0476600:intron 35.0%
ATTATGTACAGGAAAAAGGG+AGG + chr3_3:80440225-80440244 None:intergenic 35.0%
GATTAAGAGAGATTCTGCAA+AGG + chr3_3:80440260-80440279 None:intergenic 35.0%
TCTCTTAATCTTACAGCCTT+TGG - chr3_3:80440270-80440289 Msa0476600:intron 35.0%
! AACGAATCATTGTGATGGAA+AGG - chr3_3:80440396-80440415 Msa0476600:intron 35.0%
AAGGAGATGAAATGTTAGCT+AGG - chr3_3:80440415-80440434 Msa0476600:intron 35.0%
AGGAGATGAAATGTTAGCTA+GGG - chr3_3:80440416-80440435 Msa0476600:intron 35.0%
GCTGTGTGTAAACTGTAAAT+TGG + chr3_3:80440630-80440649 None:intergenic 35.0%
! GGTTATAGCTGATTCATACT+TGG - chr3_3:80440730-80440749 Msa0476600:intron 35.0%
ATGTATGATCTTCGGCATAG+TGG - chr3_3:80437418-80437437 Msa0476600:three_prime_UTR 40.0%
TACGCCAAATGGACACTATT+AGG + chr3_3:80437451-80437470 None:intergenic 40.0%
AGTTCCCATTATTCCCTGTT+TGG - chr3_3:80437626-80437645 Msa0476600:intron 40.0%
GGATTCCAAACAGGGAATAA+TGG + chr3_3:80437634-80437653 None:intergenic 40.0%
!! CTTATCTTAGTTTTCCCCAG+TGG - chr3_3:80437899-80437918 Msa0476600:intron 40.0%
GGTACTTGCCCATTAAGAAT+TGG - chr3_3:80437933-80437952 Msa0476600:intron 40.0%
!! GGAGGTACCCAATTCTTAAT+GGG + chr3_3:80437944-80437963 None:intergenic 40.0%
!! TGGAGGTACCCAATTCTTAA+TGG + chr3_3:80437945-80437964 None:intergenic 40.0%
!!! TTTTTGAGGTGCTAGCTTGA+AGG - chr3_3:80438074-80438093 Msa0476600:intron 40.0%
!!! TTTTGAGGTGCTAGCTTGAA+GGG - chr3_3:80438075-80438094 Msa0476600:intron 40.0%
GCATGATCATAGGATATTGG+TGG - chr3_3:80438205-80438224 Msa0476600:intron 40.0%
!! CATGATTCGTTTGATGATGG+TGG - chr3_3:80438235-80438254 Msa0476600:intron 40.0%
ATCTCAGTGTTCTCATCATC+CGG + chr3_3:80438327-80438346 None:intergenic 40.0%
TAGAAAAAAGCTAGAGCCTC+TGG - chr3_3:80438851-80438870 Msa0476600:intron 40.0%
ACAGTTCCAGATCAAGGATT+TGG - chr3_3:80438902-80438921 Msa0476600:CDS 40.0%
CAGTTCCAGATCAAGGATTT+GGG - chr3_3:80438903-80438922 Msa0476600:CDS 40.0%
CATTACCCAAATCCTTGATC+TGG + chr3_3:80438911-80438930 None:intergenic 40.0%
ATCTAGCATGACAGAGAAAG+CGG + chr3_3:80438949-80438968 None:intergenic 40.0%
CTAGTTGTGAAGAGTGAACA+TGG + chr3_3:80439192-80439211 None:intergenic 40.0%
CATGTTCACTCTTCACAACT+AGG - chr3_3:80439190-80439209 Msa0476600:intron 40.0%
TTCACAACTAGGATTGCTCT+AGG - chr3_3:80439201-80439220 Msa0476600:intron 40.0%
TAAGAGATGCGAGAGTAAAG+AGG + chr3_3:80439430-80439449 None:intergenic 40.0%
TCTCGCATCTCTTATACCTT+TGG - chr3_3:80439436-80439455 Msa0476600:intron 40.0%
! ACTGACTCAATCAAAAGGGA+GGG + chr3_3:80439527-80439546 None:intergenic 40.0%
!!! CTCAAGATTTTCAAGTCCCA+TGG - chr3_3:80439636-80439655 Msa0476600:intron 40.0%
!!! AGATTTTCAAGTCCCATGGA+AGG - chr3_3:80439640-80439659 Msa0476600:intron 40.0%
!! ATTCTGTTTCTGAAGGTCAC+TGG - chr3_3:80440070-80440089 Msa0476600:intron 40.0%
!! ATTGATTTAACGGAGGCATC+AGG + chr3_3:80440137-80440156 None:intergenic 40.0%
TGCCTCCGTTAAATCAATGA+AGG - chr3_3:80440139-80440158 Msa0476600:intron 40.0%
!! TGCCTTCATTGATTTAACGG+AGG + chr3_3:80440144-80440163 None:intergenic 40.0%
TGGTTTCAGCCTCTTACAAA+CGG - chr3_3:80440679-80440698 Msa0476600:intron 40.0%
AGACGTGTTAAGTAAGGGAA+AGG - chr3_3:80440709-80440728 Msa0476600:intron 40.0%
! TAGCTGATTCATACTTGGAC+CGG - chr3_3:80440735-80440754 Msa0476600:intron 40.0%
CTAACAGTCTCTCCAGTAAC+CGG - chr3_3:80437794-80437813 Msa0476600:intron 45.0%
TAACAGTCTCTCCAGTAACC+GGG - chr3_3:80437795-80437814 Msa0476600:intron 45.0%
TTATCTACTTGCCCGGTTAC+TGG + chr3_3:80437809-80437828 None:intergenic 45.0%
!! ATCTTAGTTTTCCCCAGTGG+TGG - chr3_3:80437902-80437921 Msa0476600:intron 45.0%
TACCATTAAGCACCACCACT+GGG + chr3_3:80437917-80437936 None:intergenic 45.0%
AACTGTGTGAGGATTACAGC+TGG + chr3_3:80438888-80438907 None:intergenic 45.0%
GAAAGCGGTTCACGAAAAAC+TGG + chr3_3:80438934-80438953 None:intergenic 45.0%
AGATCGGCAGAGGGAAAATT+GGG + chr3_3:80439328-80439347 None:intergenic 45.0%
TTTACACGAAGAGATGCTGC+AGG + chr3_3:80439366-80439385 None:intergenic 45.0%
TGACTCAATCAAAAGGGAGG+GGG + chr3_3:80439525-80439544 None:intergenic 45.0%
CTGACTCAATCAAAAGGGAG+GGG + chr3_3:80439526-80439545 None:intergenic 45.0%
! GACTGACTCAATCAAAAGGG+AGG + chr3_3:80439528-80439547 None:intergenic 45.0%
TATGCTTCTGACAGTGGCAA+TGG - chr3_3:80439909-80439928 Msa0476600:intron 45.0%
TCACCTGTCCAGAGCAATAA+GGG + chr3_3:80440180-80440199 None:intergenic 45.0%
ATCACCTGTCCAGAGCAATA+AGG + chr3_3:80440181-80440200 None:intergenic 45.0%
TAAACGGGACCTTAGCTAGT+CGG + chr3_3:80440296-80440315 None:intergenic 45.0%
ACCGTCAGACGTGTTAAGTA+AGG - chr3_3:80440703-80440722 Msa0476600:intron 45.0%
CCCTTACTTAACACGTCTGA+CGG + chr3_3:80440707-80440726 None:intergenic 45.0%
CCGTCAGACGTGTTAAGTAA+GGG - chr3_3:80440704-80440723 Msa0476600:intron 45.0%
! AGCTGATTCATACTTGGACC+GGG - chr3_3:80440736-80440755 Msa0476600:intron 45.0%
AGACGTGGAAACAGAGAACT+TGG - chr3_3:80440760-80440779 Msa0476600:intron 45.0%
CTGGAGAGACTGTTAGGAAC+CGG + chr3_3:80437790-80437809 None:intergenic 50.0%
CGGTTACTGGAGAGACTGTT+AGG + chr3_3:80437796-80437815 None:intergenic 50.0%
ACCATTAAGCACCACCACTG+GGG + chr3_3:80437916-80437935 None:intergenic 50.0%
GTACCATTAAGCACCACCAC+TGG + chr3_3:80437918-80437937 None:intergenic 50.0%
! CCTTGATCTGGAACTGTGTG+AGG + chr3_3:80438899-80438918 None:intergenic 50.0%
CCTCACACAGTTCCAGATCA+AGG - chr3_3:80438896-80438915 Msa0476600:CDS 50.0%
GATCGGCAGAGGGAAAATTG+GGG + chr3_3:80439327-80439346 None:intergenic 50.0%
GAGATCGGCAGAGGGAAAAT+TGG + chr3_3:80439329-80439348 None:intergenic 50.0%
GAGGGGGAAAACTTCCAACA+GGG + chr3_3:80439509-80439528 None:intergenic 50.0%
GCGCAATATGCTTCTGACAG+TGG - chr3_3:80439903-80439922 Msa0476600:intron 50.0%
!! CTGTTTCTGAAGGTCACTGG+AGG - chr3_3:80440073-80440092 Msa0476600:intron 50.0%
CACGCAGAAGCAAGGAATCA+AGG + chr3_3:80440100-80440119 None:intergenic 50.0%
TCTTGAAGCACGCAGAAGCA+AGG + chr3_3:80440108-80440127 None:intergenic 50.0%
CAGTTCTGCCCTTATTGCTC+TGG - chr3_3:80440169-80440188 Msa0476600:intron 50.0%
CTGACGGTACCGTTTGTAAG+AGG + chr3_3:80440691-80440710 None:intergenic 50.0%
TCTCTGTTTCCACGTCTTCC+CGG + chr3_3:80440757-80440776 None:intergenic 50.0%
GAAACAGAGAACTTGGACCC+TGG - chr3_3:80440767-80440786 Msa0476600:intron 50.0%
! TCCCCAGTGGTGGTGCTTAA+TGG - chr3_3:80437912-80437931 Msa0476600:intron 55.0%
GCTGGTACGTAAGTCTCCAG+AGG + chr3_3:80438870-80438889 None:intergenic 55.0%
GCGAAGTAGAGATCGGCAGA+GGG + chr3_3:80439337-80439356 None:intergenic 55.0%
AGCGAAGTAGAGATCGGCAG+AGG + chr3_3:80439338-80439357 None:intergenic 55.0%
TGCCGATCTCTACTTCGCTC+TGG - chr3_3:80439339-80439358 Msa0476600:intron 55.0%
GCCGATCTCTACTTCGCTCT+GGG - chr3_3:80439340-80439359 Msa0476600:intron 55.0%
GCCCAGAGCGAAGTAGAGAT+CGG + chr3_3:80439344-80439363 None:intergenic 55.0%
GGAGGGGGAAAACTTCCAAC+AGG + chr3_3:80439510-80439529 None:intergenic 55.0%
! CTGCCCTTATTGCTCTGGAC+AGG - chr3_3:80440174-80440193 Msa0476600:intron 55.0%
! AGCCTTTGGCCGACTAGCTA+AGG - chr3_3:80440284-80440303 Msa0476600:intron 55.0%
GACCTTAGCTAGTCGGCCAA+AGG + chr3_3:80440289-80440308 None:intergenic 55.0%
ATACTTGGACCGGGAAGACG+TGG - chr3_3:80440745-80440764 Msa0476600:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 80437333 80440948 80437333 ID=Msa0476600;Name=Msa0476600
chr3_3 mRNA 80437333 80440948 80437333 ID=Msa0476600-mRNA-1;Parent=Msa0476600;Name=Msa0476600-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.8|0.66|0.83|0.6|0.83|6|131|159
chr3_3 exon 80437333 80437593 80437333 ID=Msa0476600-mRNA-1:exon:22051;Parent=Msa0476600-mRNA-1
chr3_3 exon 80438086 80438196 80438086 ID=Msa0476600-mRNA-1:exon:22050;Parent=Msa0476600-mRNA-1
chr3_3 exon 80438314 80438381 80438314 ID=Msa0476600-mRNA-1:exon:22049;Parent=Msa0476600-mRNA-1
chr3_3 exon 80438886 80438980 80438886 ID=Msa0476600-mRNA-1:exon:22048;Parent=Msa0476600-mRNA-1
chr3_3 exon 80439357 80439427 80439357 ID=Msa0476600-mRNA-1:exon:22047;Parent=Msa0476600-mRNA-1
chr3_3 exon 80440944 80440948 80440944 ID=Msa0476600-mRNA-1:exon:22046;Parent=Msa0476600-mRNA-1
chr3_3 CDS 80440944 80440948 80440944 ID=Msa0476600-mRNA-1:cds;Parent=Msa0476600-mRNA-1
chr3_3 CDS 80439357 80439427 80439357 ID=Msa0476600-mRNA-1:cds;Parent=Msa0476600-mRNA-1
chr3_3 CDS 80438886 80438980 80438886 ID=Msa0476600-mRNA-1:cds;Parent=Msa0476600-mRNA-1
chr3_3 CDS 80438314 80438381 80438314 ID=Msa0476600-mRNA-1:cds;Parent=Msa0476600-mRNA-1
chr3_3 CDS 80438086 80438196 80438086 ID=Msa0476600-mRNA-1:cds;Parent=Msa0476600-mRNA-1
chr3_3 CDS 80437464 80437593 80437464 ID=Msa0476600-mRNA-1:cds;Parent=Msa0476600-mRNA-1
chr3_3 three_prime_UTR 80437333 80437463 80437333 ID=Msa0476600-mRNA-1:three_prime_utr;Parent=Msa0476600-mRNA-1
Gene Sequence

>Msa0476600

ATGGGAAAAAAGCTAGAGCCTCTGGAGACTTACGTACCAGCTGTAATCCTCACACAGTTCCAGATCAAGGATTTGGAAAAAACTTTAGAGGGTAATGAGCCCCAATTTTCCCTCTGCCGATCTCTACTTCGCTCTGGGCCTGCAGCATCTCTTCGTGTAAATATTCGAGCAGTCGCGCAATATGCTTCTGACAGTGGCAATGGTAAAACTGCATTGAACAATGTTGATGATTGTCTGAGGTCACTGGAGGACCTTGATTCCTTGCTTCTGCGTGCTTCAAGAAATGATCCTGATGCCTCCGTTAAATCAATGAAGGCAAAAGTCAGTTCTGCCCTTATTGCTCTGGACAGCCTCTTACAAACGGTACCGTCAGACGTGTTAAGTAAGGGAAAGGTTATAGCTGATTCATACTTGGACCGGGAAGACGTGGAAACAGAGAACTTGGACCCTGGTTTAAAGCAATTAGAATCAATACTGTGA

Protein sequence

>Msa0476600

MGKKLEPLETYVPAVILTQFQIKDLEKTLEGNEPQFSLCRSLLRSGPAASLRVNIRAVAQYASDSGNGKTALNNVDDCLRSLEDLDSLLLRASRNDPDASVKSMKAKVSSALIALDSLLQTVPSDVLSKGKVIADSYLDREDVETENLDPGLKQLESIL*