Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1388690 | XP_003626377.2 | 97.727 | 176 | 4 | 0 | 1 | 176 | 1 | 176 | 1.74e-123 | 355 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1388690 | sp|O34569|YOAA_BACSU | 31.073 | 177 | 110 | 6 | 4 | 172 | 5 | 177 | 4.97e-17 | 77.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1388690 | G7L0S4 | 97.727 | 176 | 4 | 0 | 1 | 176 | 1 | 176 | 8.30e-124 | 355 |
Gene ID | Type | Classification |
---|---|---|
Msa1388690 | TR | GNAT |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004180 | Msa1388690 | -0.806026 | 1.004749e-49 | -8.615850e-47 |
Msa0027020 | Msa1388690 | -0.827837 | 1.254770e-54 | -8.615850e-47 |
Msa0042520 | Msa1388690 | -0.823200 | 1.574147e-53 | -8.615850e-47 |
Msa0058760 | Msa1388690 | 0.822029 | 2.947329e-53 | -8.615850e-47 |
Msa0074860 | Msa1388690 | -0.802416 | 5.668109e-49 | -8.615850e-47 |
Msa0087550 | Msa1388690 | 0.845954 | 2.941787e-59 | -8.615850e-47 |
Msa0093360 | Msa1388690 | -0.800026 | 1.747957e-48 | -8.615850e-47 |
Msa0094710 | Msa1388690 | 0.809257 | 2.068755e-50 | -8.615850e-47 |
Msa0103590 | Msa1388690 | 0.817602 | 3.029121e-52 | -8.615850e-47 |
Msa1350590 | Msa1388690 | -0.828952 | 6.754464e-55 | -8.615850e-47 |
Msa1356100 | Msa1388690 | -0.803291 | 3.739338e-49 | -8.615850e-47 |
Msa1372460 | Msa1388690 | -0.809732 | 1.635835e-50 | -8.615850e-47 |
Msa1379020 | Msa1388690 | 0.818067 | 2.378629e-52 | -8.615850e-47 |
Msa1388690 | Msa1408230 | -0.806353 | 8.572620e-50 | -8.615850e-47 |
Msa1388690 | Msa1415510 | -0.801490 | 8.787444e-49 | -8.615850e-47 |
Msa1388690 | Msa1432760 | 0.927268 | 1.487967e-91 | -8.615850e-47 |
Msa1388690 | Msa1434860 | -0.807474 | 4.966373e-50 | -8.615850e-47 |
Msa0622450 | Msa1388690 | -0.803317 | 3.693720e-49 | -8.615850e-47 |
Msa0642920 | Msa1388690 | 0.829976 | 3.807369e-55 | -8.615850e-47 |
Msa0660650 | Msa1388690 | 0.807147 | 5.826605e-50 | -8.615850e-47 |
Msa0667670 | Msa1388690 | -0.806700 | 7.240761e-50 | -8.615850e-47 |
Msa0695250 | Msa1388690 | -0.805823 | 1.108419e-49 | -8.615850e-47 |
Msa0712880 | Msa1388690 | 0.808445 | 3.087137e-50 | -8.615850e-47 |
Msa0713570 | Msa1388690 | -0.809664 | 1.692011e-50 | -8.615850e-47 |
Msa0755550 | Msa1388690 | -0.808865 | 2.509802e-50 | -8.615850e-47 |
Msa0817710 | Msa1388690 | 0.800179 | 1.627002e-48 | -8.615850e-47 |
Msa0835050 | Msa1388690 | -0.808864 | 2.511394e-50 | -8.615850e-47 |
Msa0134270 | Msa1388690 | 0.840710 | 7.382516e-58 | -8.615850e-47 |
Msa0167160 | Msa1388690 | -0.821498 | 3.911053e-53 | -8.615850e-47 |
Msa0225280 | Msa1388690 | -0.805251 | 1.460780e-49 | -8.615850e-47 |
Msa1228260 | Msa1388690 | -0.817182 | 3.765059e-52 | -8.615850e-47 |
Msa1271220 | Msa1388690 | -0.819319 | 1.236390e-52 | -8.615850e-47 |
Msa1279060 | Msa1388690 | 0.846152 | 2.599179e-59 | -8.615850e-47 |
Msa1308430 | Msa1388690 | -0.808913 | 2.451302e-50 | -8.615850e-47 |
Msa1315880 | Msa1388690 | -0.802001 | 6.900131e-49 | -8.615850e-47 |
Msa1341710 | Msa1388690 | -0.801914 | 7.192045e-49 | -8.615850e-47 |
Msa1341850 | Msa1388690 | -0.812458 | 4.196730e-51 | -8.615850e-47 |
Msa0372570 | Msa1388690 | -0.806320 | 8.710103e-50 | -8.615850e-47 |
Msa0417790 | Msa1388690 | -0.804609 | 1.989706e-49 | -8.615850e-47 |
Msa0427230 | Msa1388690 | -0.801414 | 9.107981e-49 | -8.615850e-47 |
Msa0431270 | Msa1388690 | -0.817024 | 4.086523e-52 | -8.615850e-47 |
Msa0449500 | Msa1388690 | 0.803385 | 3.575475e-49 | -8.615850e-47 |
Msa0462450 | Msa1388690 | 0.808107 | 3.642824e-50 | -8.615850e-47 |
Msa0473740 | Msa1388690 | -0.803225 | 3.858197e-49 | -8.615850e-47 |
Msa0474560 | Msa1388690 | 0.821009 | 5.069118e-53 | -8.615850e-47 |
Msa0476600 | Msa1388690 | -0.828900 | 6.950997e-55 | -8.615850e-47 |
Msa0984230 | Msa1388690 | -0.802045 | 6.758674e-49 | -8.615850e-47 |
Msa1002550 | Msa1388690 | -0.800970 | 1.122719e-48 | -8.615850e-47 |
Msa1011250 | Msa1388690 | 0.807679 | 4.493605e-50 | -8.615850e-47 |
Msa1028890 | Msa1388690 | -0.807208 | 5.654376e-50 | -8.615850e-47 |
Msa1068010 | Msa1388690 | -0.803610 | 3.210981e-49 | -8.615850e-47 |
Msa0255770 | Msa1388690 | -0.808512 | 2.985759e-50 | -8.615850e-47 |
Msa0266330 | Msa1388690 | -0.803499 | 3.386308e-49 | -8.615850e-47 |
Msa0310270 | Msa1388690 | -0.813085 | 3.060295e-51 | -8.615850e-47 |
Msa0341950 | Msa1388690 | -0.801789 | 7.626927e-49 | -8.615850e-47 |
Msa1112190 | Msa1388690 | 0.812686 | 3.741420e-51 | -8.615850e-47 |
Msa1121720 | Msa1388690 | -0.804636 | 1.964273e-49 | -8.615850e-47 |
Msa1130150 | Msa1388690 | -0.810031 | 1.410853e-50 | -8.615850e-47 |
Msa1208990 | Msa1388690 | 0.800183 | 1.624062e-48 | -8.615850e-47 |
Msa1217260 | Msa1388690 | 0.830720 | 2.504944e-55 | -8.615850e-47 |
Msa0492330 | Msa1388690 | -0.815908 | 7.264243e-52 | -8.615850e-47 |
Msa0497680 | Msa1388690 | 0.804701 | 1.903861e-49 | -8.615850e-47 |
Msa0500580 | Msa1388690 | -0.803728 | 3.035357e-49 | -8.615850e-47 |
Msa0512950 | Msa1388690 | -0.814006 | 1.919569e-51 | -8.615850e-47 |
Msa0547060 | Msa1388690 | 0.803510 | 3.368078e-49 | -8.615850e-47 |
Msa0580890 | Msa1388690 | -0.803638 | 3.168072e-49 | -8.615850e-47 |
Msa0873910 | Msa1388690 | 0.816510 | 5.327829e-52 | -8.615850e-47 |
Msa0882480 | Msa1388690 | -0.801157 | 1.028067e-48 | -8.615850e-47 |
Msa0906660 | Msa1388690 | 0.804958 | 1.682762e-49 | -8.615850e-47 |
Msa0945160 | Msa1388690 | -0.802669 | 5.026809e-49 | -8.615850e-47 |
Msa0975960 | Msa1388690 | 0.809000 | 2.348937e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1388690 | MtrunA17_Chr7g0273661 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 3.25e-112 | 316 |
Msa1388690 | MtrunA17_Chr7g0223361 | 58.523 | 176 | 72 | 1 | 1 | 176 | 1 | 175 | 3.21e-71 | 213 |
Msa1388690 | MtrunA17_Chr7g0223351 | 60.920 | 174 | 66 | 2 | 1 | 174 | 1 | 172 | 3.23e-67 | 203 |
Msa1388690 | MtrunA17_Chr1g0204971 | 46.784 | 171 | 86 | 2 | 4 | 171 | 19 | 187 | 5.09e-48 | 154 |
Msa1388690 | MtrunA17_Chr1g0204951 | 45.614 | 171 | 88 | 2 | 4 | 171 | 19 | 187 | 5.57e-47 | 152 |
Msa1388690 | MtrunA17_Chr5g0394621 | 42.442 | 172 | 96 | 1 | 3 | 171 | 16 | 187 | 1.15e-46 | 151 |
Msa1388690 | MtrunA17_Chr5g0394631 | 43.030 | 165 | 91 | 1 | 4 | 165 | 17 | 181 | 7.54e-43 | 147 |
Msa1388690 | MtrunA17_Chr5g0394631 | 43.429 | 175 | 90 | 5 | 4 | 171 | 226 | 398 | 2.80e-39 | 138 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1388690 | AT3G22560.1 | 55.422 | 166 | 72 | 1 | 8 | 171 | 7 | 172 | 1.01e-63 | 194 |
Msa1388690 | AT2G32030.1 | 47.305 | 167 | 84 | 2 | 8 | 173 | 24 | 187 | 4.95e-57 | 178 |
Msa1388690 | AT2G32020.1 | 47.701 | 174 | 87 | 2 | 1 | 173 | 12 | 182 | 1.22e-56 | 177 |
Find 42 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTGTTGCTTCTAACTATT+GGG | 0.152318 | tig0021157:+69673 | Msa1388690:CDS |
TTCTGATTTGTTAAGGTTGC+AGG | 0.201561 | tig0021157:+69754 | Msa1388690:CDS |
ATGCTGTTGCTTCTAACTAT+TGG | 0.211993 | tig0021157:+69672 | Msa1388690:CDS |
CAAGGCTTCTCAAAGAGTTT+TGG | 0.245031 | tig0021157:+69796 | Msa1388690:CDS |
AGACATCTTTGATGAAAGTT+AGG | 0.305845 | tig0021157:-69541 | None:intergenic |
CAAAGGTACCATCATGGATT+TGG | 0.335385 | tig0021157:+69868 | Msa1388690:CDS |
AATAGATCATAAAGAGTAAC+AGG | 0.344936 | tig0021157:-69945 | None:intergenic |
CGTTGACGATTTCATGTTAT+GGG | 0.361603 | tig0021157:+69457 | Msa1388690:CDS |
TTCTAAGAACACCCTCTCTA+AGG | 0.383141 | tig0021157:-69832 | None:intergenic |
ACGTTGACGATTTCATGTTA+TGG | 0.384226 | tig0021157:+69456 | Msa1388690:CDS |
TCAACGTCTGTTAGCTTGAA+TGG | 0.418956 | tig0021157:-69440 | None:intergenic |
GTTTCTGTGTATCCTTGGTC+AGG | 0.429314 | tig0021157:+69620 | Msa1388690:CDS |
GACGATTTCATGTTATGGGC+AGG | 0.454598 | tig0021157:+69461 | Msa1388690:CDS |
GACATCTTTGATGAAAGTTA+GGG | 0.457791 | tig0021157:-69540 | None:intergenic |
CAGGAGACAAAATAATCAAC+AGG | 0.459432 | tig0021157:-69926 | None:intergenic |
TGGCAAAGGTGGATCTATCT+AGG | 0.472926 | tig0021157:+69405 | Msa1388690:CDS |
CGATTTCATGTTATGGGCAG+GGG | 0.502678 | tig0021157:+69463 | Msa1388690:CDS |
GCTTCTAACTATTGGGGTCA+AGG | 0.506483 | tig0021157:+69680 | Msa1388690:CDS |
ATCGAATGACGCCAAGGGTG+AGG | 0.527528 | tig0021157:-69569 | None:intergenic |
TGTCTCGACGACCGTTCCAT+CGG | 0.528351 | tig0021157:+69593 | Msa1388690:CDS |
GCTGTTGCTTCTAACTATTG+GGG | 0.550437 | tig0021157:+69674 | Msa1388690:CDS |
AGAAAGTATACTTATATCAA+AGG | 0.562044 | tig0021157:+69851 | Msa1388690:CDS |
CTTCTAACTATTGGGGTCAA+GGG | 0.563961 | tig0021157:+69681 | Msa1388690:CDS |
TTTGACCAACATGGCAAAGG+TGG | 0.564105 | tig0021157:+69394 | None:intergenic |
ATCCTTGGTCAGGTGATGAT+AGG | 0.566062 | tig0021157:+69630 | Msa1388690:CDS |
GATGGAAAACTTGCAATTCG+AGG | 0.572925 | tig0021157:+69510 | Msa1388690:CDS |
ACGATTTCATGTTATGGGCA+GGG | 0.580454 | tig0021157:+69462 | Msa1388690:CDS |
GATAGGTGCAAAGCTGACAT+AGG | 0.586688 | tig0021157:+69647 | Msa1388690:CDS |
ATGGAAAACTTGCAATTCGA+GGG | 0.591968 | tig0021157:+69511 | Msa1388690:CDS |
ATGTCTGCATACCTCACCCT+TGG | 0.593939 | tig0021157:+69558 | Msa1388690:CDS |
TTATATCAAAGGTACCATCA+TGG | 0.596125 | tig0021157:+69862 | Msa1388690:CDS |
AGACAGATCGAATGACGCCA+AGG | 0.596639 | tig0021157:-69575 | None:intergenic |
TCATTTGACCAACATGGCAA+AGG | 0.601751 | tig0021157:+69391 | None:intergenic |
AAAGGCTGGGTTCCTTAGAG+AGG | 0.612674 | tig0021157:+69820 | Msa1388690:CDS |
ATACACAGAAACAAAACCGA+TGG | 0.615405 | tig0021157:-69609 | None:intergenic |
AAAGACAGCCAAATCCATGA+TGG | 0.623533 | tig0021157:-69876 | None:intergenic |
GACAGATCGAATGACGCCAA+GGG | 0.628805 | tig0021157:-69574 | None:intergenic |
CAGAAACAAAACCGATGGAA+CGG | 0.641063 | tig0021157:-69604 | None:intergenic |
AAGGCTGGGTTCCTTAGAGA+GGG | 0.646930 | tig0021157:+69821 | Msa1388690:CDS |
GAGACAAAATAATCAACAGG+AGG | 0.670315 | tig0021157:-69923 | None:intergenic |
CACCTATCATCACCTGACCA+AGG | 0.677858 | tig0021157:-69632 | None:intergenic |
ATCTATCTAGGATATCTCTG+AGG | 0.735761 | tig0021157:+69417 | Msa1388690:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGATTTTTCTGATTTGTTA+AGG | + | tig0021157:69747-69766 | Msa1388690:CDS | 20.0% |
!!! | AGAAAGTATACTTATATCAA+AGG | + | tig0021157:69851-69870 | Msa1388690:CDS | 20.0% |
GACATCTTTGATGAAAGTTA+GGG | - | tig0021157:69543-69562 | None:intergenic | 30.0% | |
AGACATCTTTGATGAAAGTT+AGG | - | tig0021157:69544-69563 | None:intergenic | 30.0% | |
!!! | AGCAATTTTGATTGCTTTTG+TGG | - | tig0021157:69711-69730 | None:intergenic | 30.0% |
! | TTTTACTTACGTGGATAACA+AGG | + | tig0021157:69778-69797 | Msa1388690:CDS | 30.0% |
!!! | TTCTCAAAGAGTTTTGGAAA+AGG | + | tig0021157:69802-69821 | Msa1388690:CDS | 30.0% |
!! | TTATATCAAAGGTACCATCA+TGG | + | tig0021157:69862-69881 | Msa1388690:CDS | 30.0% |
! | ATCTATCTAGGATATCTCTG+AGG | + | tig0021157:69417-69436 | Msa1388690:CDS | 35.0% |
ACGTTGACGATTTCATGTTA+TGG | + | tig0021157:69456-69475 | Msa1388690:CDS | 35.0% | |
CGTTGACGATTTCATGTTAT+GGG | + | tig0021157:69457-69476 | Msa1388690:CDS | 35.0% | |
AAGTAACCAAAAACATCCGA+TGG | + | tig0021157:69492-69511 | Msa1388690:CDS | 35.0% | |
! | AGTTTTCCATCGGATGTTTT+TGG | - | tig0021157:69501-69520 | None:intergenic | 35.0% |
! | TCGAATTGCAAGTTTTCCAT+CGG | - | tig0021157:69511-69530 | None:intergenic | 35.0% |
ATGGAAAACTTGCAATTCGA+GGG | + | tig0021157:69511-69530 | Msa1388690:CDS | 35.0% | |
ATACACAGAAACAAAACCGA+TGG | - | tig0021157:69612-69631 | None:intergenic | 35.0% | |
!!! | GTTTTGTTTCTGTGTATCCT+TGG | + | tig0021157:69615-69634 | Msa1388690:CDS | 35.0% |
! | ATGCTGTTGCTTCTAACTAT+TGG | + | tig0021157:69672-69691 | Msa1388690:CDS | 35.0% |
! | TGCTGTTGCTTCTAACTATT+GGG | + | tig0021157:69673-69692 | Msa1388690:CDS | 35.0% |
!! | TTCTGATTTGTTAAGGTTGC+AGG | + | tig0021157:69754-69773 | Msa1388690:CDS | 35.0% |
!!! | AAAGAGTTTTGGAAAAGGCT+GGG | + | tig0021157:69807-69826 | Msa1388690:CDS | 35.0% |
GAGACAAAATAATCAACAGG+AGG | - | tig0021157:69926-69945 | None:intergenic | 35.0% | |
CAGGAGACAAAATAATCAAC+AGG | - | tig0021157:69929-69948 | None:intergenic | 35.0% | |
! | TCAACGTCTGTTAGCTTGAA+TGG | - | tig0021157:69443-69462 | None:intergenic | 40.0% |
ACGATTTCATGTTATGGGCA+GGG | + | tig0021157:69462-69481 | Msa1388690:CDS | 40.0% | |
GATGGAAAACTTGCAATTCG+AGG | + | tig0021157:69510-69529 | Msa1388690:CDS | 40.0% | |
CAGAAACAAAACCGATGGAA+CGG | - | tig0021157:69607-69626 | None:intergenic | 40.0% | |
! | GCTGTTGCTTCTAACTATTG+GGG | + | tig0021157:69674-69693 | Msa1388690:CDS | 40.0% |
CTTCTAACTATTGGGGTCAA+GGG | + | tig0021157:69681-69700 | Msa1388690:CDS | 40.0% | |
! | CAAGGCTTCTCAAAGAGTTT+TGG | + | tig0021157:69796-69815 | Msa1388690:CDS | 40.0% |
!!! | CAAAGAGTTTTGGAAAAGGC+TGG | + | tig0021157:69806-69825 | Msa1388690:CDS | 40.0% |
! | TTCTAAGAACACCCTCTCTA+AGG | - | tig0021157:69835-69854 | None:intergenic | 40.0% |
!! | CAAAGGTACCATCATGGATT+TGG | + | tig0021157:69868-69887 | Msa1388690:CDS | 40.0% |
AAAGACAGCCAAATCCATGA+TGG | - | tig0021157:69879-69898 | None:intergenic | 40.0% | |
TGGCAAAGGTGGATCTATCT+AGG | + | tig0021157:69405-69424 | Msa1388690:CDS | 45.0% | |
GACGATTTCATGTTATGGGC+AGG | + | tig0021157:69461-69480 | Msa1388690:CDS | 45.0% | |
CGATTTCATGTTATGGGCAG+GGG | + | tig0021157:69463-69482 | Msa1388690:CDS | 45.0% | |
GTTTCTGTGTATCCTTGGTC+AGG | + | tig0021157:69620-69639 | Msa1388690:CDS | 45.0% | |
ATCCTTGGTCAGGTGATGAT+AGG | + | tig0021157:69630-69649 | Msa1388690:CDS | 45.0% | |
GATAGGTGCAAAGCTGACAT+AGG | + | tig0021157:69647-69666 | Msa1388690:CDS | 45.0% | |
GCTTCTAACTATTGGGGTCA+AGG | + | tig0021157:69680-69699 | Msa1388690:CDS | 45.0% | |
! | GTTGCAGGCTTTTACTTACG+TGG | + | tig0021157:69769-69788 | Msa1388690:CDS | 45.0% |
ATGTCTGCATACCTCACCCT+TGG | + | tig0021157:69558-69577 | Msa1388690:CDS | 50.0% | |
GACAGATCGAATGACGCCAA+GGG | - | tig0021157:69577-69596 | None:intergenic | 50.0% | |
AGACAGATCGAATGACGCCA+AGG | - | tig0021157:69578-69597 | None:intergenic | 50.0% | |
CACCTATCATCACCTGACCA+AGG | - | tig0021157:69635-69654 | None:intergenic | 50.0% | |
AAAGGCTGGGTTCCTTAGAG+AGG | + | tig0021157:69820-69839 | Msa1388690:CDS | 50.0% | |
AAGGCTGGGTTCCTTAGAGA+GGG | + | tig0021157:69821-69840 | Msa1388690:CDS | 50.0% | |
ATCGAATGACGCCAAGGGTG+AGG | - | tig0021157:69572-69591 | None:intergenic | 55.0% | |
TGTCTCGACGACCGTTCCAT+CGG | + | tig0021157:69593-69612 | Msa1388690:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0021157 | gene | 69404 | 69961 | 69404 | ID=Msa1388690;Name=Msa1388690 |
tig0021157 | mRNA | 69404 | 69961 | 69404 | ID=Msa1388690-mRNA-1;Parent=Msa1388690;Name=Msa1388690-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|185 |
tig0021157 | exon | 69404 | 69961 | 69404 | ID=Msa1388690-mRNA-1:exon:11238;Parent=Msa1388690-mRNA-1 |
tig0021157 | CDS | 69404 | 69961 | 69404 | ID=Msa1388690-mRNA-1:cds;Parent=Msa1388690-mRNA-1 |
Gene Sequence |
Protein sequence |