Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104500 | XP_013466371.1 | 90.647 | 278 | 21 | 1 | 1 | 278 | 1 | 273 | 1.71e-172 | 488 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104500 | sp|Q700C7|SPCH_ARATH | 44.411 | 331 | 113 | 7 | 19 | 278 | 14 | 344 | 3.69e-70 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104500 | A0A072VF69 | 90.647 | 278 | 21 | 1 | 1 | 278 | 1 | 273 | 8.17e-173 | 488 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0104500 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074650 | Msa0104500 | 0.801496 | 8.761799e-49 | -8.615850e-47 |
| Msa0104500 | Msa0124130 | 0.824773 | 6.731643e-54 | -8.615850e-47 |
| Msa0104500 | Msa0252630 | 0.809048 | 2.293375e-50 | -8.615850e-47 |
| Msa0104500 | Msa0333450 | 0.806061 | 9.878494e-50 | -8.615850e-47 |
| Msa0104500 | Msa0359250 | 0.808898 | 2.469591e-50 | -8.615850e-47 |
| Msa0104500 | Msa0373960 | 0.820306 | 7.353450e-53 | -8.615850e-47 |
| Msa0104500 | Msa0406000 | 0.812678 | 3.757086e-51 | -8.615850e-47 |
| Msa0104500 | Msa0423100 | 0.833242 | 5.968548e-56 | -8.615850e-47 |
| Msa0104500 | Msa0424330 | 0.803133 | 4.031461e-49 | -8.615850e-47 |
| Msa0104500 | Msa0451400 | 0.820512 | 6.596176e-53 | -8.615850e-47 |
| Msa0104500 | Msa0469260 | 0.827694 | 1.357934e-54 | -8.615850e-47 |
| Msa0104500 | Msa0492190 | 0.811397 | 7.145964e-51 | -8.615850e-47 |
| Msa0104500 | Msa0534930 | 0.839327 | 1.693121e-57 | -8.615850e-47 |
| Msa0104500 | Msa0535040 | 0.806862 | 6.692226e-50 | -8.615850e-47 |
| Msa0104500 | Msa0575740 | 0.822266 | 2.597093e-53 | -8.615850e-47 |
| Msa0104500 | Msa0591790 | 0.818671 | 1.735387e-52 | -8.615850e-47 |
| Msa0104500 | Msa0591800 | 0.861838 | 7.743706e-64 | -8.615850e-47 |
| Msa0104500 | Msa0669840 | 0.835365 | 1.751149e-56 | -8.615850e-47 |
| Msa0104500 | Msa0725860 | 0.835213 | 1.912826e-56 | -8.615850e-47 |
| Msa0104500 | Msa0739480 | 0.804365 | 2.237696e-49 | -8.615850e-47 |
| Msa0104500 | Msa0786040 | 0.830866 | 2.306569e-55 | -8.615850e-47 |
| Msa0104500 | Msa0819900 | 0.810145 | 1.333285e-50 | -8.615850e-47 |
| Msa0104500 | Msa0823400 | 0.809346 | 1.980623e-50 | -8.615850e-47 |
| Msa0104500 | Msa0845940 | 0.852575 | 4.220141e-61 | -8.615850e-47 |
| Msa0104500 | Msa0860170 | 0.864836 | 9.124738e-65 | -8.615850e-47 |
| Msa0104500 | Msa0927120 | 0.803281 | 3.756918e-49 | -8.615850e-47 |
| Msa0104500 | Msa0941820 | 0.811674 | 6.222236e-51 | -8.615850e-47 |
| Msa0104500 | Msa0965310 | 0.808714 | 2.703719e-50 | -8.615850e-47 |
| Msa0104500 | Msa0996270 | 0.804335 | 2.269599e-49 | -8.615850e-47 |
| Msa0104500 | Msa0999340 | 0.865501 | 5.639654e-65 | -8.615850e-47 |
| Msa0104500 | Msa0999350 | 0.823105 | 1.656452e-53 | -8.615850e-47 |
| Msa0104500 | Msa0999360 | 0.800611 | 1.328820e-48 | -8.615850e-47 |
| Msa0104500 | Msa0999390 | 0.844511 | 7.225106e-59 | -8.615850e-47 |
| Msa0104500 | Msa0999400 | 0.814084 | 1.844311e-51 | -8.615850e-47 |
| Msa0104500 | Msa0999410 | 0.805664 | 1.196934e-49 | -8.615850e-47 |
| Msa0104500 | Msa0999700 | 0.805170 | 1.519439e-49 | -8.615850e-47 |
| Msa0104500 | Msa1073340 | 0.803670 | 3.120522e-49 | -8.615850e-47 |
| Msa0104500 | Msa1084520 | 0.817523 | 3.154773e-52 | -8.615850e-47 |
| Msa0104500 | Msa1092020 | 0.806894 | 6.590796e-50 | -8.615850e-47 |
| Msa0104500 | Msa1135380 | 0.821350 | 4.230015e-53 | -8.615850e-47 |
| Msa0104500 | Msa1171310 | 0.813849 | 2.078256e-51 | -8.615850e-47 |
| Msa0104500 | Msa1228190 | 0.827237 | 1.747879e-54 | -8.615850e-47 |
| Msa0104500 | Msa1271260 | 0.826617 | 2.459519e-54 | -8.615850e-47 |
| Msa0104500 | Msa1389050 | 0.809942 | 1.474382e-50 | -8.615850e-47 |
| Msa0104500 | Msa1435480 | 0.832266 | 1.042969e-55 | -8.615850e-47 |
| Msa0104500 | Msa1458910 | 0.817677 | 2.913483e-52 | -8.615850e-47 |
| Msa0104500 | Msa1462530 | 0.807860 | 4.111323e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104500 | MtrunA17_Chr1g0158941 | 90.647 | 278 | 21 | 1 | 1 | 278 | 1 | 273 | 1.57e-176 | 488 |
| Msa0104500 | MtrunA17_Chr3g0126381 | 59.890 | 182 | 47 | 6 | 121 | 278 | 1 | 180 | 1.85e-57 | 182 |
| Msa0104500 | MtrunA17_Chr2g0287761 | 49.198 | 187 | 74 | 2 | 92 | 278 | 1 | 166 | 1.10e-54 | 175 |
| Msa0104500 | MtrunA17_Chr0c01g0489461 | 39.076 | 238 | 122 | 4 | 43 | 279 | 156 | 371 | 2.37e-46 | 160 |
| Msa0104500 | MtrunA17_Chr3g0132471 | 37.885 | 227 | 123 | 4 | 54 | 278 | 79 | 289 | 8.16e-38 | 135 |
| Msa0104500 | MtrunA17_Chr7g0273081 | 36.916 | 214 | 111 | 4 | 66 | 278 | 93 | 283 | 1.07e-35 | 130 |
| Msa0104500 | MtrunA17_Chr1g0191571 | 38.462 | 195 | 91 | 4 | 91 | 278 | 135 | 307 | 8.37e-34 | 125 |
| Msa0104500 | MtrunA17_Chr8g0366551 | 36.410 | 195 | 90 | 5 | 91 | 278 | 123 | 290 | 1.19e-32 | 122 |
| Msa0104500 | MtrunA17_Chr3g0126361 | 53.846 | 130 | 37 | 7 | 15 | 123 | 5 | 132 | 4.82e-30 | 110 |
| Msa0104500 | MtrunA17_Chr5g0426851 | 32.117 | 274 | 137 | 8 | 27 | 278 | 23 | 269 | 6.25e-29 | 111 |
| Msa0104500 | MtrunA17_Chr8g0345871 | 31.225 | 253 | 131 | 4 | 40 | 278 | 115 | 338 | 1.63e-26 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104500 | AT5G53210.2 | 44.713 | 331 | 112 | 7 | 19 | 278 | 14 | 344 | 1.39e-71 | 224 |
| Msa0104500 | AT5G53210.1 | 44.411 | 331 | 113 | 7 | 19 | 278 | 14 | 344 | 3.75e-71 | 223 |
| Msa0104500 | AT3G06120.1 | 45.213 | 188 | 87 | 3 | 92 | 278 | 1 | 173 | 5.41e-47 | 156 |
| Msa0104500 | AT3G24140.1 | 40.758 | 211 | 113 | 2 | 69 | 279 | 177 | 375 | 1.36e-44 | 156 |
| Msa0104500 | AT3G24140.2 | 40.758 | 211 | 113 | 2 | 69 | 279 | 177 | 375 | 1.47e-44 | 155 |
| Msa0104500 | AT1G72210.2 | 34.500 | 200 | 86 | 5 | 91 | 278 | 124 | 290 | 1.28e-29 | 114 |
| Msa0104500 | AT1G72210.1 | 34.500 | 200 | 86 | 5 | 91 | 278 | 124 | 290 | 1.45e-29 | 114 |
| Msa0104500 | AT1G22490.1 | 35.638 | 188 | 97 | 3 | 91 | 278 | 114 | 277 | 1.30e-26 | 105 |
| Msa0104500 | AT1G22490.2 | 35.638 | 188 | 97 | 3 | 91 | 278 | 114 | 277 | 3.80e-26 | 105 |
| Msa0104500 | AT4G01460.1 | 35.979 | 189 | 100 | 2 | 90 | 278 | 113 | 280 | 2.20e-25 | 102 |
| Msa0104500 | AT4G01460.2 | 35.979 | 189 | 100 | 2 | 90 | 278 | 113 | 280 | 2.20e-25 | 102 |
| Msa0104500 | AT5G65320.2 | 34.500 | 200 | 107 | 4 | 79 | 278 | 93 | 268 | 1.19e-21 | 92.0 |
| Msa0104500 | AT5G65320.1 | 34.500 | 200 | 107 | 4 | 79 | 278 | 93 | 268 | 1.84e-21 | 92.0 |
| Msa0104500 | AT2G46810.4 | 32.804 | 189 | 95 | 2 | 91 | 278 | 120 | 277 | 2.24e-21 | 92.0 |
| Msa0104500 | AT2G46810.2 | 32.275 | 189 | 96 | 2 | 91 | 278 | 120 | 277 | 3.46e-21 | 91.3 |
| Msa0104500 | AT2G46810.3 | 32.275 | 189 | 96 | 2 | 91 | 278 | 180 | 337 | 1.03e-20 | 90.9 |
| Msa0104500 | AT2G46810.1 | 32.275 | 189 | 96 | 2 | 91 | 278 | 192 | 349 | 1.06e-20 | 90.9 |
| Msa0104500 | AT3G61950.6 | 32.571 | 175 | 86 | 2 | 91 | 265 | 126 | 268 | 5.53e-20 | 87.8 |
| Msa0104500 | AT3G61950.2 | 32.571 | 175 | 86 | 2 | 91 | 265 | 126 | 268 | 9.08e-20 | 87.4 |
| Msa0104500 | AT3G61950.3 | 32.571 | 175 | 86 | 2 | 91 | 265 | 177 | 319 | 1.27e-19 | 87.8 |
| Msa0104500 | AT3G61950.1 | 32.571 | 175 | 86 | 2 | 91 | 265 | 177 | 319 | 1.71e-19 | 87.4 |
| Msa0104500 | AT5G46690.2 | 56.164 | 73 | 30 | 1 | 91 | 161 | 87 | 159 | 1.56e-18 | 84.0 |
| Msa0104500 | AT5G46690.1 | 56.164 | 73 | 30 | 1 | 91 | 161 | 87 | 159 | 3.19e-18 | 83.6 |
Find 32 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGTTTCTTGGATTCT+AGG | 0.149526 | 1_3:+12444311 | None:intergenic |
| GCTATACTTGTTCACTATTA+AGG | 0.194492 | 1_3:-12443939 | Msa0104500:CDS |
| TATGGAGTTCTTGGACTAAT+TGG | 0.233920 | 1_3:+12444229 | None:intergenic |
| CTCGTTGATGTTATCATTGA+TGG | 0.262537 | 1_3:+12444141 | None:intergenic |
| CTAATTGGTAAGATTATTCT+AGG | 0.295024 | 1_3:+12444244 | None:intergenic |
| CATTGTTGCAGCCATTGATA+TGG | 0.304075 | 1_3:+12444211 | None:intergenic |
| AGCCATTGATATGGAGTTCT+TGG | 0.322803 | 1_3:+12444220 | None:intergenic |
| ATATTCAATGAAACTGAGTT+TGG | 0.348570 | 1_3:-12444986 | Msa0104500:CDS |
| ACCGTTTCGTCGCGAATTCC+AGG | 0.364973 | 1_3:-12444046 | Msa0104500:CDS |
| AACAAGGTGTCATGATCTAT+TGG | 0.372909 | 1_3:+12445019 | None:intergenic |
| TGTGACTTCTTCAATTATAG+AGG | 0.399402 | 1_3:-12444813 | Msa0104500:CDS |
| ATGGAAGAAGCTGAAGAAGT+TGG | 0.426375 | 1_3:+12444160 | None:intergenic |
| GGACTTAGTGGTAAAGGTCT+TGG | 0.429539 | 1_3:+12444265 | None:intergenic |
| AAGATTATTCTAGGACTTAG+TGG | 0.440624 | 1_3:+12444253 | None:intergenic |
| TGTCGCGAATTCAACGTCTT+CGG | 0.476200 | 1_3:-12444116 | Msa0104500:CDS |
| CCCTGGAATTCGCGACGAAA+CGG | 0.488943 | 1_3:+12444045 | None:intergenic |
| ATTCTAGGACTTAGTGGTAA+AGG | 0.492814 | 1_3:+12444259 | None:intergenic |
| GTACAAAATGGAAACTCAAA+AGG | 0.509601 | 1_3:-12445044 | None:intergenic |
| GTCCAAGAACTCCATATCAA+TGG | 0.523072 | 1_3:-12444222 | Msa0104500:CDS |
| ATTATTCTAACAGCCTGCCC+TGG | 0.524990 | 1_3:+12444028 | None:intergenic |
| TTCGTCGCGAATTCCAGGGC+AGG | 0.529472 | 1_3:-12444041 | Msa0104500:CDS |
| GTCTTCGGTTGCTGATGTTG+AGG | 0.532887 | 1_3:-12444101 | Msa0104500:CDS |
| TGAAACTGAGTTTGGTTCAG+AGG | 0.550414 | 1_3:-12444978 | Msa0104500:CDS |
| GAAGCTGAAGAAGTTGGAGA+TGG | 0.575822 | 1_3:+12444166 | None:intergenic |
| ACATCGTATGTCGCATATCA+CGG | 0.587471 | 1_3:-12444771 | Msa0104500:CDS |
| GATCAAGCATCAATAGTTGA+AGG | 0.590664 | 1_3:-12444376 | Msa0104500:CDS |
| AATAGTGAACAAGTATAGCA+TGG | 0.592880 | 1_3:+12443943 | None:intergenic |
| CCGTTTCGTCGCGAATTCCA+GGG | 0.603327 | 1_3:-12444045 | Msa0104500:CDS |
| ATAGAGGAACAAAACAACGA+TGG | 0.690625 | 1_3:-12444797 | Msa0104500:CDS |
| CAATGGCTGCAACAATGTGG+TGG | 0.712975 | 1_3:-12444205 | Msa0104500:CDS |
| GAATATATCAGATAACAACA+AGG | 0.741545 | 1_3:+12445003 | None:intergenic |
| TATCAATGGCTGCAACAATG+TGG | 0.755174 | 1_3:-12444208 | Msa0104500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTGAAGTTTTCCAAAA+TGG | + | chr1_3:12444025-12444044 | None:intergenic | 20.0% |
| !!! | AGTTTTAAATGAAACTAGTT+AGG | - | chr1_3:12444356-12444375 | Msa0104500:CDS | 20.0% |
| !!! | GTTTTAAATGAAACTAGTTA+GGG | - | chr1_3:12444357-12444376 | Msa0104500:CDS | 20.0% |
| !!! | TTTTAAATGAAACTAGTTAG+GGG | - | chr1_3:12444358-12444377 | Msa0104500:CDS | 20.0% |
| !!! | ATTATTGAAGTTTTCCAAAA+TGG | + | chr1_3:12444025-12444044 | None:intergenic | 20.0% |
| !!! | AGTTTTAAATGAAACTAGTT+AGG | - | chr1_3:12444356-12444375 | Msa0104500:CDS | 20.0% |
| !!! | GTTTTAAATGAAACTAGTTA+GGG | - | chr1_3:12444357-12444376 | Msa0104500:CDS | 20.0% |
| !!! | TTTTAAATGAAACTAGTTAG+GGG | - | chr1_3:12444358-12444377 | Msa0104500:CDS | 20.0% |
| ! | GAATATATCAGATAACAACA+AGG | + | chr1_3:12443968-12443987 | None:intergenic | 25.0% |
| ! | ATATTCAATGAAACTGAGTT+TGG | - | chr1_3:12443982-12444001 | Msa0104500:CDS | 25.0% |
| !!! | AAGATGTTGTTTTTGAGTTT+TGG | + | chr1_3:12444068-12444087 | None:intergenic | 25.0% |
| ! | CAACTAATTACTCTTCTATA+TGG | - | chr1_3:12444561-12444580 | Msa0104500:intron | 25.0% |
| !!! | GTAAACTTTTCTTTGTTTCT+TGG | + | chr1_3:12444668-12444687 | None:intergenic | 25.0% |
| ! | CTAATTGGTAAGATTATTCT+AGG | + | chr1_3:12444727-12444746 | None:intergenic | 25.0% |
| ! | GAATATATCAGATAACAACA+AGG | + | chr1_3:12443968-12443987 | None:intergenic | 25.0% |
| ! | ATATTCAATGAAACTGAGTT+TGG | - | chr1_3:12443982-12444001 | Msa0104500:CDS | 25.0% |
| !!! | AAGATGTTGTTTTTGAGTTT+TGG | + | chr1_3:12444068-12444087 | None:intergenic | 25.0% |
| ! | CAACTAATTACTCTTCTATA+TGG | - | chr1_3:12444561-12444580 | Msa0104500:intron | 25.0% |
| !!! | GTAAACTTTTCTTTGTTTCT+TGG | + | chr1_3:12444668-12444687 | None:intergenic | 25.0% |
| ! | CTAATTGGTAAGATTATTCT+AGG | + | chr1_3:12444727-12444746 | None:intergenic | 25.0% |
| ! | AGAGGATCTATTTTCCATTT+TGG | - | chr1_3:12444008-12444027 | Msa0104500:CDS | 30.0% |
| !! | GAGTTTTGGTCATTGATAAT+GGG | + | chr1_3:12444054-12444073 | None:intergenic | 30.0% |
| !! | TGAGTTTTGGTCATTGATAA+TGG | + | chr1_3:12444055-12444074 | None:intergenic | 30.0% |
| TGTGACTTCTTCAATTATAG+AGG | - | chr1_3:12444155-12444174 | Msa0104500:CDS | 30.0% | |
| ! | ACTCTTTTGACATAAAAGCA+AGG | + | chr1_3:12444282-12444301 | None:intergenic | 30.0% |
| CATAAACCAGACCAAATTTA+TGG | - | chr1_3:12444392-12444411 | Msa0104500:intron | 30.0% | |
| ATTACTCTTCTATATGGCTT+AGG | - | chr1_3:12444567-12444586 | Msa0104500:intron | 30.0% | |
| TTACTCTTCTATATGGCTTA+GGG | - | chr1_3:12444568-12444587 | Msa0104500:intron | 30.0% | |
| ! | TTCTTTGTTTCTTGGATTCT+AGG | + | chr1_3:12444660-12444679 | None:intergenic | 30.0% |
| !! | AAGATTATTCTAGGACTTAG+TGG | + | chr1_3:12444718-12444737 | None:intergenic | 30.0% |
| AATAGTGAACAAGTATAGCA+TGG | + | chr1_3:12445028-12445047 | None:intergenic | 30.0% | |
| GCTATACTTGTTCACTATTA+AGG | - | chr1_3:12445029-12445048 | Msa0104500:CDS | 30.0% | |
| ! | AGAGGATCTATTTTCCATTT+TGG | - | chr1_3:12444008-12444027 | Msa0104500:CDS | 30.0% |
| !! | GAGTTTTGGTCATTGATAAT+GGG | + | chr1_3:12444054-12444073 | None:intergenic | 30.0% |
| !! | TGAGTTTTGGTCATTGATAA+TGG | + | chr1_3:12444055-12444074 | None:intergenic | 30.0% |
| TGTGACTTCTTCAATTATAG+AGG | - | chr1_3:12444155-12444174 | Msa0104500:CDS | 30.0% | |
| ! | ACTCTTTTGACATAAAAGCA+AGG | + | chr1_3:12444282-12444301 | None:intergenic | 30.0% |
| CATAAACCAGACCAAATTTA+TGG | - | chr1_3:12444392-12444411 | Msa0104500:intron | 30.0% | |
| ATTACTCTTCTATATGGCTT+AGG | - | chr1_3:12444567-12444586 | Msa0104500:intron | 30.0% | |
| TTACTCTTCTATATGGCTTA+GGG | - | chr1_3:12444568-12444587 | Msa0104500:intron | 30.0% | |
| ! | TTCTTTGTTTCTTGGATTCT+AGG | + | chr1_3:12444660-12444679 | None:intergenic | 30.0% |
| !! | AAGATTATTCTAGGACTTAG+TGG | + | chr1_3:12444718-12444737 | None:intergenic | 30.0% |
| AATAGTGAACAAGTATAGCA+TGG | + | chr1_3:12445028-12445047 | None:intergenic | 30.0% | |
| GCTATACTTGTTCACTATTA+AGG | - | chr1_3:12445029-12445048 | Msa0104500:CDS | 30.0% | |
| ! | AACAAGGTGTCATGATCTAT+TGG | + | chr1_3:12443952-12443971 | None:intergenic | 35.0% |
| ! | TGCTCATTTTCAGAAACTTG+AGG | + | chr1_3:12444099-12444118 | None:intergenic | 35.0% |
| ATAGAGGAACAAAACAACGA+TGG | - | chr1_3:12444171-12444190 | Msa0104500:CDS | 35.0% | |
| TAAACTACGGTTCGTAGTTA+GGG | + | chr1_3:12444441-12444460 | None:intergenic | 35.0% | |
| TAACTACGAACCGTAGTTTA+CGG | - | chr1_3:12444441-12444460 | Msa0104500:intron | 35.0% | |
| ATTGCATCAACCGTAAACTA+CGG | + | chr1_3:12444454-12444473 | None:intergenic | 35.0% | |
| GATCAAGCATCAATAGTTGA+AGG | - | chr1_3:12444592-12444611 | Msa0104500:intron | 35.0% | |
| !! | ATTCTAGGACTTAGTGGTAA+AGG | + | chr1_3:12444712-12444731 | None:intergenic | 35.0% |
| TATGGAGTTCTTGGACTAAT+TGG | + | chr1_3:12444742-12444761 | None:intergenic | 35.0% | |
| CTCGTTGATGTTATCATTGA+TGG | + | chr1_3:12444830-12444849 | None:intergenic | 35.0% | |
| ! | GATGTTGAGGTTAAGTTTTG+TGG | - | chr1_3:12444880-12444899 | Msa0104500:CDS | 35.0% |
| ! | AACAAGGTGTCATGATCTAT+TGG | + | chr1_3:12443952-12443971 | None:intergenic | 35.0% |
| ! | TGCTCATTTTCAGAAACTTG+AGG | + | chr1_3:12444099-12444118 | None:intergenic | 35.0% |
| ATAGAGGAACAAAACAACGA+TGG | - | chr1_3:12444171-12444190 | Msa0104500:CDS | 35.0% | |
| TAAACTACGGTTCGTAGTTA+GGG | + | chr1_3:12444441-12444460 | None:intergenic | 35.0% | |
| TAACTACGAACCGTAGTTTA+CGG | - | chr1_3:12444441-12444460 | Msa0104500:intron | 35.0% | |
| ATTGCATCAACCGTAAACTA+CGG | + | chr1_3:12444454-12444473 | None:intergenic | 35.0% | |
| GATCAAGCATCAATAGTTGA+AGG | - | chr1_3:12444592-12444611 | Msa0104500:intron | 35.0% | |
| !! | ATTCTAGGACTTAGTGGTAA+AGG | + | chr1_3:12444712-12444731 | None:intergenic | 35.0% |
| TATGGAGTTCTTGGACTAAT+TGG | + | chr1_3:12444742-12444761 | None:intergenic | 35.0% | |
| CTCGTTGATGTTATCATTGA+TGG | + | chr1_3:12444830-12444849 | None:intergenic | 35.0% | |
| ! | GATGTTGAGGTTAAGTTTTG+TGG | - | chr1_3:12444880-12444899 | Msa0104500:CDS | 35.0% |
| ! | TGAAACTGAGTTTGGTTCAG+AGG | - | chr1_3:12443990-12444009 | Msa0104500:CDS | 40.0% |
| ACATCGTATGTCGCATATCA+CGG | - | chr1_3:12444197-12444216 | Msa0104500:CDS | 40.0% | |
| ACCAGACCAAATTTATGGTC+TGG | - | chr1_3:12444397-12444416 | Msa0104500:intron | 40.0% | |
| ACCAGACCATAAATTTGGTC+TGG | + | chr1_3:12444401-12444420 | None:intergenic | 40.0% | |
| ACTGGACCAGACCATAAATT+TGG | + | chr1_3:12444406-12444425 | None:intergenic | 40.0% | |
| AAACTACGGTTCGTAGTTAG+GGG | + | chr1_3:12444440-12444459 | None:intergenic | 40.0% | |
| GTAAACTACGGTTCGTAGTT+AGG | + | chr1_3:12444442-12444461 | None:intergenic | 40.0% | |
| GTCCAAGAACTCCATATCAA+TGG | - | chr1_3:12444746-12444765 | Msa0104500:CDS | 40.0% | |
| AGCCATTGATATGGAGTTCT+TGG | + | chr1_3:12444751-12444770 | None:intergenic | 40.0% | |
| CATTGTTGCAGCCATTGATA+TGG | + | chr1_3:12444760-12444779 | None:intergenic | 40.0% | |
| TATCAATGGCTGCAACAATG+TGG | - | chr1_3:12444760-12444779 | Msa0104500:CDS | 40.0% | |
| ATGGAAGAAGCTGAAGAAGT+TGG | + | chr1_3:12444811-12444830 | None:intergenic | 40.0% | |
| ! | TGAAACTGAGTTTGGTTCAG+AGG | - | chr1_3:12443990-12444009 | Msa0104500:CDS | 40.0% |
| ACATCGTATGTCGCATATCA+CGG | - | chr1_3:12444197-12444216 | Msa0104500:CDS | 40.0% | |
| ACCAGACCAAATTTATGGTC+TGG | - | chr1_3:12444397-12444416 | Msa0104500:intron | 40.0% | |
| ACCAGACCATAAATTTGGTC+TGG | + | chr1_3:12444401-12444420 | None:intergenic | 40.0% | |
| ACTGGACCAGACCATAAATT+TGG | + | chr1_3:12444406-12444425 | None:intergenic | 40.0% | |
| AAACTACGGTTCGTAGTTAG+GGG | + | chr1_3:12444440-12444459 | None:intergenic | 40.0% | |
| GTAAACTACGGTTCGTAGTT+AGG | + | chr1_3:12444442-12444461 | None:intergenic | 40.0% | |
| GTCCAAGAACTCCATATCAA+TGG | - | chr1_3:12444746-12444765 | Msa0104500:CDS | 40.0% | |
| AGCCATTGATATGGAGTTCT+TGG | + | chr1_3:12444751-12444770 | None:intergenic | 40.0% | |
| CATTGTTGCAGCCATTGATA+TGG | + | chr1_3:12444760-12444779 | None:intergenic | 40.0% | |
| TATCAATGGCTGCAACAATG+TGG | - | chr1_3:12444760-12444779 | Msa0104500:CDS | 40.0% | |
| ATGGAAGAAGCTGAAGAAGT+TGG | + | chr1_3:12444811-12444830 | None:intergenic | 40.0% | |
| ! | TTAGGGGTGTGCAAAAGAAC+TGG | + | chr1_3:12444424-12444443 | None:intergenic | 45.0% |
| GGACTTAGTGGTAAAGGTCT+TGG | + | chr1_3:12444706-12444725 | None:intergenic | 45.0% | |
| GAAGCTGAAGAAGTTGGAGA+TGG | + | chr1_3:12444805-12444824 | None:intergenic | 45.0% | |
| TGTCGCGAATTCAACGTCTT+CGG | - | chr1_3:12444852-12444871 | Msa0104500:CDS | 45.0% | |
| ATTATTCTAACAGCCTGCCC+TGG | + | chr1_3:12444943-12444962 | None:intergenic | 45.0% | |
| ! | TTAGGGGTGTGCAAAAGAAC+TGG | + | chr1_3:12444424-12444443 | None:intergenic | 45.0% |
| GGACTTAGTGGTAAAGGTCT+TGG | + | chr1_3:12444706-12444725 | None:intergenic | 45.0% | |
| GAAGCTGAAGAAGTTGGAGA+TGG | + | chr1_3:12444805-12444824 | None:intergenic | 45.0% | |
| TGTCGCGAATTCAACGTCTT+CGG | - | chr1_3:12444852-12444871 | Msa0104500:CDS | 45.0% | |
| ATTATTCTAACAGCCTGCCC+TGG | + | chr1_3:12444943-12444962 | None:intergenic | 45.0% | |
| !!! | TAATTTTATTCTTAATAAAA+AGG | + | chr1_3:12444498-12444517 | None:intergenic | 5.0% |
| !!! | TAATTTTATTCTTAATAAAA+AGG | + | chr1_3:12444498-12444517 | None:intergenic | 5.0% |
| CAATGGCTGCAACAATGTGG+TGG | - | chr1_3:12444763-12444782 | Msa0104500:CDS | 50.0% | |
| GTCTTCGGTTGCTGATGTTG+AGG | - | chr1_3:12444867-12444886 | Msa0104500:CDS | 50.0% | |
| CAATGGCTGCAACAATGTGG+TGG | - | chr1_3:12444763-12444782 | Msa0104500:CDS | 50.0% | |
| GTCTTCGGTTGCTGATGTTG+AGG | - | chr1_3:12444867-12444886 | Msa0104500:CDS | 50.0% | |
| ACCGTTTCGTCGCGAATTCC+AGG | - | chr1_3:12444922-12444941 | Msa0104500:CDS | 55.0% | |
| CCCTGGAATTCGCGACGAAA+CGG | + | chr1_3:12444926-12444945 | None:intergenic | 55.0% | |
| CCGTTTCGTCGCGAATTCCA+GGG | - | chr1_3:12444923-12444942 | Msa0104500:CDS | 55.0% | |
| ACCGTTTCGTCGCGAATTCC+AGG | - | chr1_3:12444922-12444941 | Msa0104500:CDS | 55.0% | |
| CCCTGGAATTCGCGACGAAA+CGG | + | chr1_3:12444926-12444945 | None:intergenic | 55.0% | |
| CCGTTTCGTCGCGAATTCCA+GGG | - | chr1_3:12444923-12444942 | Msa0104500:CDS | 55.0% | |
| TTCGTCGCGAATTCCAGGGC+AGG | - | chr1_3:12444927-12444946 | Msa0104500:CDS | 60.0% | |
| TTCGTCGCGAATTCCAGGGC+AGG | - | chr1_3:12444927-12444946 | Msa0104500:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 12443931 | 12445059 | 12443931 | ID=Msa0104500;Name=Msa0104500 |
| chr1_3 | mRNA | 12443931 | 12445059 | 12443931 | ID=Msa0104500-mRNA-1;Parent=Msa0104500;Name=Msa0104500-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|279 |
| chr1_3 | exon | 12444691 | 12445059 | 12444691 | ID=Msa0104500-mRNA-1:exon:4951;Parent=Msa0104500-mRNA-1 |
| chr1_3 | exon | 12443931 | 12444401 | 12443931 | ID=Msa0104500-mRNA-1:exon:4950;Parent=Msa0104500-mRNA-1 |
| chr1_3 | CDS | 12444691 | 12445059 | 12444691 | ID=Msa0104500-mRNA-1:cds;Parent=Msa0104500-mRNA-1 |
| chr1_3 | CDS | 12443931 | 12444401 | 12443931 | ID=Msa0104500-mRNA-1:cds;Parent=Msa0104500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
