Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496450 | XP_003599533.1 | 92.565 | 269 | 19 | 1 | 1 | 268 | 1 | 269 | 8.77e-165 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496450 | sp|P09444|LEA34_GOSHI | 50.735 | 272 | 116 | 6 | 1 | 266 | 1 | 260 | 5.85e-63 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496450 | G7IZL9 | 92.565 | 269 | 19 | 1 | 1 | 268 | 1 | 269 | 4.19e-165 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa0496450 | 0.828967 | 6.695128e-55 | -8.615850e-47 |
| Msa0010500 | Msa0496450 | 0.816585 | 5.125099e-52 | -8.615850e-47 |
| Msa0020390 | Msa0496450 | 0.862908 | 3.629686e-64 | -8.615850e-47 |
| Msa0024930 | Msa0496450 | 0.810998 | 8.723620e-51 | -8.615850e-47 |
| Msa0029260 | Msa0496450 | 0.826885 | 2.122483e-54 | -8.615850e-47 |
| Msa0036540 | Msa0496450 | 0.803680 | 3.105625e-49 | -8.615850e-47 |
| Msa0038870 | Msa0496450 | 0.826439 | 2.711679e-54 | -8.615850e-47 |
| Msa0071250 | Msa0496450 | 0.838984 | 2.077448e-57 | -8.615850e-47 |
| Msa0072420 | Msa0496450 | 0.817407 | 3.351004e-52 | -8.615850e-47 |
| Msa0089820 | Msa0496450 | 0.807771 | 4.295719e-50 | -8.615850e-47 |
| Msa0090520 | Msa0496450 | 0.827399 | 1.598057e-54 | -8.615850e-47 |
| Msa0090550 | Msa0496450 | 0.831067 | 2.058982e-55 | -8.615850e-47 |
| Msa0091610 | Msa0496450 | 0.801311 | 9.560274e-49 | -8.615850e-47 |
| Msa0093010 | Msa0496450 | 0.819891 | 9.154091e-53 | -8.615850e-47 |
| Msa0095360 | Msa0496450 | 0.804452 | 2.145688e-49 | -8.615850e-47 |
| Msa0095770 | Msa0496450 | 0.804475 | 2.122465e-49 | -8.615850e-47 |
| Msa0118540 | Msa0496450 | 0.835567 | 1.556173e-56 | -8.615850e-47 |
| Msa0121870 | Msa0496450 | 0.812147 | 4.906241e-51 | -8.615850e-47 |
| Msa0137990 | Msa0496450 | 0.825509 | 4.509420e-54 | -8.615850e-47 |
| Msa0139670 | Msa0496450 | 0.814538 | 1.464176e-51 | -8.615850e-47 |
| Msa0149440 | Msa0496450 | 0.801640 | 8.186688e-49 | -8.615850e-47 |
| Msa0159420 | Msa0496450 | 0.805456 | 1.323450e-49 | -8.615850e-47 |
| Msa0162130 | Msa0496450 | 0.822580 | 2.195415e-53 | -8.615850e-47 |
| Msa0167980 | Msa0496450 | 0.823751 | 1.170125e-53 | -8.615850e-47 |
| Msa0169300 | Msa0496450 | 0.827182 | 1.801962e-54 | -8.615850e-47 |
| Msa0183850 | Msa0496450 | 0.803973 | 2.698959e-49 | -8.615850e-47 |
| Msa0183870 | Msa0496450 | 0.840187 | 1.011137e-57 | -8.615850e-47 |
| Msa0183900 | Msa0496450 | 0.816739 | 4.734002e-52 | -8.615850e-47 |
| Msa0189520 | Msa0496450 | 0.819936 | 8.936509e-53 | -8.615850e-47 |
| Msa0190120 | Msa0496450 | 0.824868 | 6.391670e-54 | -8.615850e-47 |
| Msa0204960 | Msa0496450 | 0.852029 | 6.035286e-61 | -8.615850e-47 |
| Msa0207670 | Msa0496450 | 0.833661 | 4.692577e-56 | -8.615850e-47 |
| Msa0207700 | Msa0496450 | 0.805837 | 1.100533e-49 | -8.615850e-47 |
| Msa0209350 | Msa0496450 | 0.816621 | 5.031725e-52 | -8.615850e-47 |
| Msa0209500 | Msa0496450 | 0.803880 | 2.822058e-49 | -8.615850e-47 |
| Msa0217670 | Msa0496450 | 0.805557 | 1.260594e-49 | -8.615850e-47 |
| Msa0231790 | Msa0496450 | 0.844321 | 8.125906e-59 | -8.615850e-47 |
| Msa0233370 | Msa0496450 | 0.835789 | 1.367526e-56 | -8.615850e-47 |
| Msa0379690 | Msa0496450 | 0.802623 | 5.137214e-49 | -8.615850e-47 |
| Msa0380100 | Msa0496450 | 0.830633 | 2.631455e-55 | -8.615850e-47 |
| Msa0382370 | Msa0496450 | 0.808117 | 3.625401e-50 | -8.615850e-47 |
| Msa0385490 | Msa0496450 | 0.803567 | 3.278426e-49 | -8.615850e-47 |
| Msa0385500 | Msa0496450 | 0.872961 | 2.125516e-67 | -8.615850e-47 |
| Msa0388700 | Msa0496450 | 0.802000 | 6.903106e-49 | -8.615850e-47 |
| Msa0401560 | Msa0496450 | 0.847827 | 9.041055e-60 | -8.615850e-47 |
| Msa0403770 | Msa0496450 | 0.819871 | 9.251723e-53 | -8.615850e-47 |
| Msa0448390 | Msa0496450 | 0.808997 | 2.352333e-50 | -8.615850e-47 |
| Msa0450400 | Msa0496450 | -0.820387 | 7.046542e-53 | -8.615850e-47 |
| Msa0457510 | Msa0496450 | 0.800016 | 1.756164e-48 | -8.615850e-47 |
| Msa0462600 | Msa0496450 | 0.817451 | 3.275273e-52 | -8.615850e-47 |
| Msa0463850 | Msa0496450 | 0.805563 | 1.256776e-49 | -8.615850e-47 |
| Msa0244970 | Msa0496450 | 0.835506 | 1.613125e-56 | -8.615850e-47 |
| Msa0244980 | Msa0496450 | 0.862006 | 6.875454e-64 | -8.615850e-47 |
| Msa0249580 | Msa0496450 | 0.808549 | 2.933057e-50 | -8.615850e-47 |
| Msa0256330 | Msa0496450 | 0.811704 | 6.129209e-51 | -8.615850e-47 |
| Msa0257490 | Msa0496450 | 0.848131 | 7.452866e-60 | -8.615850e-47 |
| Msa0261550 | Msa0496450 | 0.849825 | 2.521163e-60 | -8.615850e-47 |
| Msa0269470 | Msa0496450 | 0.820531 | 6.531760e-53 | -8.615850e-47 |
| Msa0271360 | Msa0496450 | 0.807034 | 6.156238e-50 | -8.615850e-47 |
| Msa0271890 | Msa0496450 | 0.828271 | 9.862427e-55 | -8.615850e-47 |
| Msa0274040 | Msa0496450 | -0.805413 | 1.351093e-49 | -8.615850e-47 |
| Msa0275360 | Msa0496450 | 0.808584 | 2.881975e-50 | -8.615850e-47 |
| Msa0281530 | Msa0496450 | 0.871532 | 6.362257e-67 | -8.615850e-47 |
| Msa0283420 | Msa0496450 | 0.831446 | 1.661304e-55 | -8.615850e-47 |
| Msa0295330 | Msa0496450 | 0.804562 | 2.035423e-49 | -8.615850e-47 |
| Msa0296790 | Msa0496450 | 0.846046 | 2.776793e-59 | -8.615850e-47 |
| Msa0310860 | Msa0496450 | 0.830058 | 3.635418e-55 | -8.615850e-47 |
| Msa0320590 | Msa0496450 | 0.840250 | 9.735672e-58 | -8.615850e-47 |
| Msa0321690 | Msa0496450 | 0.843924 | 1.038661e-58 | -8.615850e-47 |
| Msa0335060 | Msa0496450 | 0.829880 | 4.019343e-55 | -8.615850e-47 |
| Msa0339910 | Msa0496450 | 0.803215 | 3.876758e-49 | -8.615850e-47 |
| Msa0343850 | Msa0496450 | 0.825494 | 4.545403e-54 | -8.615850e-47 |
| Msa0358860 | Msa0496450 | 0.869353 | 3.299879e-66 | -8.615850e-47 |
| Msa0482940 | Msa0496450 | 0.839346 | 1.674255e-57 | -8.615850e-47 |
| Msa0485710 | Msa0496450 | 0.807691 | 4.465812e-50 | -8.615850e-47 |
| Msa0496450 | Msa0512340 | 0.808247 | 3.401881e-50 | -8.615850e-47 |
| Msa0496450 | Msa0531530 | 0.809267 | 2.058933e-50 | -8.615850e-47 |
| Msa0496450 | Msa0534900 | 0.800152 | 1.647796e-48 | -8.615850e-47 |
| Msa0496450 | Msa0542290 | 0.832997 | 6.866758e-56 | -8.615850e-47 |
| Msa0496450 | Msa0542560 | 0.867178 | 1.657423e-65 | -8.615850e-47 |
| Msa0496450 | Msa0544160 | 0.816674 | 4.896220e-52 | -8.615850e-47 |
| Msa0496450 | Msa0544840 | 0.807243 | 5.559331e-50 | -8.615850e-47 |
| Msa0496450 | Msa0547160 | 0.830436 | 2.939494e-55 | -8.615850e-47 |
| Msa0496450 | Msa0555640 | 0.820685 | 6.019158e-53 | -8.615850e-47 |
| Msa0496450 | Msa0556060 | 0.808005 | 3.830184e-50 | -8.615850e-47 |
| Msa0496450 | Msa0581110 | 0.831229 | 1.879517e-55 | -8.615850e-47 |
| Msa0496450 | Msa0588260 | 0.863082 | 3.208265e-64 | -8.615850e-47 |
| Msa0496450 | Msa0600080 | 0.861589 | 9.226830e-64 | -8.615850e-47 |
| Msa0496450 | Msa0600450 | 0.803705 | 3.068465e-49 | -8.615850e-47 |
| Msa0496450 | Msa0604290 | 0.862044 | 6.694530e-64 | -8.615850e-47 |
| Msa0496450 | Msa0610130 | 0.800688 | 1.281902e-48 | -8.615850e-47 |
| Msa0496450 | Msa0615490 | 0.803618 | 3.198559e-49 | -8.615850e-47 |
| Msa0496450 | Msa0634890 | 0.808579 | 2.889257e-50 | -8.615850e-47 |
| Msa0496450 | Msa0640940 | 0.804485 | 2.112223e-49 | -8.615850e-47 |
| Msa0496450 | Msa0642970 | 0.842579 | 2.372481e-58 | -8.615850e-47 |
| Msa0496450 | Msa0645530 | 0.807712 | 4.422007e-50 | -8.615850e-47 |
| Msa0496450 | Msa0649220 | 0.805284 | 1.437930e-49 | -8.615850e-47 |
| Msa0496450 | Msa0665280 | 0.816614 | 5.051383e-52 | -8.615850e-47 |
| Msa0496450 | Msa0672550 | 0.812093 | 5.041495e-51 | -8.615850e-47 |
| Msa0496450 | Msa0679360 | 0.808320 | 3.282066e-50 | -8.615850e-47 |
| Msa0496450 | Msa0682680 | 0.839919 | 1.187906e-57 | -8.615850e-47 |
| Msa0496450 | Msa0683600 | 0.803330 | 3.670616e-49 | -8.615850e-47 |
| Msa0496450 | Msa0685090 | 0.818782 | 1.637456e-52 | -8.615850e-47 |
| Msa0496450 | Msa0689320 | 0.821594 | 3.717031e-53 | -8.615850e-47 |
| Msa0496450 | Msa0689440 | 0.805160 | 1.526556e-49 | -8.615850e-47 |
| Msa0496450 | Msa0693210 | 0.808040 | 3.764555e-50 | -8.615850e-47 |
| Msa0496450 | Msa0698540 | 0.817544 | 3.120681e-52 | -8.615850e-47 |
| Msa0496450 | Msa0703910 | 0.801948 | 7.075278e-49 | -8.615850e-47 |
| Msa0496450 | Msa0709120 | 0.813117 | 3.010291e-51 | -8.615850e-47 |
| Msa0496450 | Msa0722300 | -0.830007 | 3.742385e-55 | -8.615850e-47 |
| Msa0496450 | Msa0722350 | -0.801929 | 7.139076e-49 | -8.615850e-47 |
| Msa0496450 | Msa0741440 | 0.802146 | 6.443282e-49 | -8.615850e-47 |
| Msa0496450 | Msa0746170 | 0.817490 | 3.209612e-52 | -8.615850e-47 |
| Msa0496450 | Msa0746210 | 0.822216 | 2.667695e-53 | -8.615850e-47 |
| Msa0496450 | Msa0794050 | 0.807618 | 4.628230e-50 | -8.615850e-47 |
| Msa0496450 | Msa0800370 | 0.829006 | 6.554157e-55 | -8.615850e-47 |
| Msa0496450 | Msa0822500 | 0.805293 | 1.431389e-49 | -8.615850e-47 |
| Msa0496450 | Msa0826150 | 0.813557 | 2.410176e-51 | -8.615850e-47 |
| Msa0496450 | Msa0828590 | 0.813262 | 2.797815e-51 | -8.615850e-47 |
| Msa0496450 | Msa0833190 | -0.800239 | 1.582093e-48 | -8.615850e-47 |
| Msa0496450 | Msa0844280 | 0.817418 | 3.331367e-52 | -8.615850e-47 |
| Msa0496450 | Msa0877710 | 0.813368 | 2.652048e-51 | -8.615850e-47 |
| Msa0496450 | Msa0880730 | 0.810734 | 9.946565e-51 | -8.615850e-47 |
| Msa0496450 | Msa0892640 | 0.800560 | 1.360882e-48 | -8.615850e-47 |
| Msa0496450 | Msa0923780 | 0.822138 | 2.780550e-53 | -8.615850e-47 |
| Msa0496450 | Msa0933380 | 0.898207 | 6.649380e-77 | -8.615850e-47 |
| Msa0496450 | Msa0944200 | 0.826051 | 3.353977e-54 | -8.615850e-47 |
| Msa0496450 | Msa0958000 | 0.872146 | 3.977329e-67 | -8.615850e-47 |
| Msa0496450 | Msa0969370 | 0.801579 | 8.423764e-49 | -8.615850e-47 |
| Msa0496450 | Msa0970600 | 0.804024 | 2.634644e-49 | -8.615850e-47 |
| Msa0496450 | Msa0971160 | 0.874197 | 8.151820e-68 | -8.615850e-47 |
| Msa0496450 | Msa0974950 | 0.844993 | 5.356414e-59 | -8.615850e-47 |
| Msa0496450 | Msa0980540 | 0.801621 | 8.260057e-49 | -8.615850e-47 |
| Msa0496450 | Msa0994370 | 0.833931 | 4.015216e-56 | -8.615850e-47 |
| Msa0496450 | Msa0999050 | -0.800722 | 1.261508e-48 | -8.615850e-47 |
| Msa0496450 | Msa1021520 | 0.803431 | 3.498363e-49 | -8.615850e-47 |
| Msa0496450 | Msa1029050 | 0.810432 | 1.156087e-50 | -8.615850e-47 |
| Msa0496450 | Msa1037520 | 0.817952 | 2.524468e-52 | -8.615850e-47 |
| Msa0496450 | Msa1041850 | 0.801904 | 7.224652e-49 | -8.615850e-47 |
| Msa0496450 | Msa1063420 | 0.801003 | 1.105249e-48 | -8.615850e-47 |
| Msa0496450 | Msa1071320 | 0.805439 | 1.333953e-49 | -8.615850e-47 |
| Msa0496450 | Msa1081790 | -0.821096 | 4.841535e-53 | -8.615850e-47 |
| Msa0496450 | Msa1091940 | 0.803763 | 2.985464e-49 | -8.615850e-47 |
| Msa0496450 | Msa1126830 | 0.828712 | 7.718698e-55 | -8.615850e-47 |
| Msa0496450 | Msa1130400 | 0.827817 | 1.268970e-54 | -8.615850e-47 |
| Msa0496450 | Msa1133230 | 0.811060 | 8.453817e-51 | -8.615850e-47 |
| Msa0496450 | Msa1133250 | 0.810028 | 1.413089e-50 | -8.615850e-47 |
| Msa0496450 | Msa1140230 | 0.806758 | 7.039773e-50 | -8.615850e-47 |
| Msa0496450 | Msa1158640 | -0.826138 | 3.198141e-54 | -8.615850e-47 |
| Msa0496450 | Msa1165780 | 0.838954 | 2.115222e-57 | -8.615850e-47 |
| Msa0496450 | Msa1166090 | -0.819407 | 1.180413e-52 | -8.615850e-47 |
| Msa0496450 | Msa1178580 | 0.807683 | 4.485112e-50 | -8.615850e-47 |
| Msa0496450 | Msa1200320 | 0.804350 | 2.253339e-49 | -8.615850e-47 |
| Msa0496450 | Msa1206270 | 0.800866 | 1.178626e-48 | -8.615850e-47 |
| Msa0496450 | Msa1208380 | 0.802966 | 4.365623e-49 | -8.615850e-47 |
| Msa0496450 | Msa1218500 | 0.817274 | 3.591074e-52 | -8.615850e-47 |
| Msa0496450 | Msa1231840 | 0.801991 | 6.933626e-49 | -8.615850e-47 |
| Msa0496450 | Msa1233850 | 0.820037 | 8.476067e-53 | -8.615850e-47 |
| Msa0496450 | Msa1254730 | 0.819464 | 1.145651e-52 | -8.615850e-47 |
| Msa0496450 | Msa1270660 | 0.800918 | 1.150090e-48 | -8.615850e-47 |
| Msa0496450 | Msa1271130 | 0.805191 | 1.503563e-49 | -8.615850e-47 |
| Msa0496450 | Msa1276150 | 0.809801 | 1.581116e-50 | -8.615850e-47 |
| Msa0496450 | Msa1294820 | 0.800437 | 1.442197e-48 | -8.615850e-47 |
| Msa0496450 | Msa1296830 | 0.843459 | 1.382927e-58 | -8.615850e-47 |
| Msa0496450 | Msa1307180 | 0.811369 | 7.246419e-51 | -8.615850e-47 |
| Msa0496450 | Msa1316360 | 0.820309 | 7.343136e-53 | -8.615850e-47 |
| Msa0496450 | Msa1332590 | 0.802438 | 5.609784e-49 | -8.615850e-47 |
| Msa0496450 | Msa1336560 | 0.823470 | 1.361336e-53 | -8.615850e-47 |
| Msa0496450 | Msa1337170 | 0.806103 | 9.675482e-50 | -8.615850e-47 |
| Msa0496450 | Msa1342630 | 0.802218 | 6.227079e-49 | -8.615850e-47 |
| Msa0496450 | Msa1351540 | 0.829120 | 6.149350e-55 | -8.615850e-47 |
| Msa0496450 | Msa1365800 | 0.822781 | 1.971342e-53 | -8.615850e-47 |
| Msa0496450 | Msa1368530 | 0.828347 | 9.458249e-55 | -8.615850e-47 |
| Msa0496450 | Msa1370590 | 0.835947 | 1.247456e-56 | -8.615850e-47 |
| Msa0496450 | Msa1384100 | 0.838178 | 3.354787e-57 | -8.615850e-47 |
| Msa0496450 | Msa1396400 | -0.816823 | 4.534513e-52 | -8.615850e-47 |
| Msa0496450 | Msa1419870 | 0.812541 | 4.024534e-51 | -8.615850e-47 |
| Msa0496450 | Msa1422810 | 0.814331 | 1.626700e-51 | -8.615850e-47 |
| Msa0496450 | Msa1436520 | 0.822465 | 2.334734e-53 | -8.615850e-47 |
| Msa0496450 | Msa1444120 | 0.832742 | 7.944382e-56 | -8.615850e-47 |
| Msa0496450 | Msa1446080 | 0.822862 | 1.887725e-53 | -8.615850e-47 |
| Msa0496450 | Msa1454680 | 0.837033 | 6.596672e-57 | -8.615850e-47 |
| Msa0496450 | Msa1458090 | 0.816397 | 5.648346e-52 | -8.615850e-47 |
| Msa0496450 | Msa1458290 | 0.816256 | 6.074008e-52 | -8.615850e-47 |
| Msa0496450 | Msa1458610 | 0.800361 | 1.494223e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496450 | MtrunA17_Chr3g0090511 | 92.565 | 269 | 19 | 1 | 1 | 268 | 68 | 336 | 1.68e-167 | 466 |
| Msa0496450 | MtrunA17_Chr1g0185421 | 49.077 | 271 | 125 | 5 | 1 | 268 | 1 | 261 | 1.22e-68 | 213 |
| Msa0496450 | MtrunA17_Chr1g0205331 | 47.940 | 267 | 125 | 5 | 1 | 266 | 32 | 285 | 1.98e-67 | 211 |
| Msa0496450 | MtrunA17_Chr1g0191151 | 41.455 | 275 | 116 | 5 | 1 | 267 | 1 | 238 | 1.21e-41 | 143 |
| Msa0496450 | MtrunA17_Chr2g0315671 | 39.416 | 137 | 76 | 3 | 1 | 137 | 71 | 200 | 1.17e-22 | 94.4 |
| Msa0496450 | MtrunA17_Chr2g0315661 | 40.336 | 119 | 65 | 2 | 1 | 119 | 1 | 113 | 3.05e-22 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496450 | AT3G22500.1 | 46.038 | 265 | 129 | 5 | 1 | 265 | 1 | 251 | 7.40e-57 | 183 |
| Msa0496450 | AT3G22490.1 | 43.542 | 271 | 126 | 5 | 5 | 266 | 6 | 258 | 3.71e-56 | 181 |
| Msa0496450 | AT1G03120.1 | 49.618 | 131 | 61 | 1 | 137 | 267 | 56 | 181 | 2.08e-29 | 110 |
| Msa0496450 | AT5G27980.1 | 53.465 | 101 | 47 | 0 | 139 | 239 | 68 | 168 | 3.40e-25 | 99.4 |
| Msa0496450 | AT5G53260.1 | 42.188 | 128 | 69 | 1 | 140 | 267 | 50 | 172 | 1.45e-18 | 81.3 |
| Msa0496450 | AT5G53270.1 | 42.063 | 126 | 68 | 1 | 140 | 265 | 31 | 151 | 3.19e-16 | 74.3 |
| Msa0496450 | AT1G03120.2 | 53.333 | 75 | 35 | 0 | 137 | 211 | 56 | 130 | 1.34e-14 | 69.3 |
Find 115 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACTTTGTGCCTATGAATA+TGG | 0.166083 | 3_4:-27242762 | Msa0496450:CDS |
| CACCGTATTTGATGGGTTCT+TGG | 0.267760 | 3_4:+27243086 | None:intergenic |
| CCATGGTTCTTCATGTTTCA+TGG | 0.274279 | 3_4:+27241077 | None:intergenic |
| GTGTGAGGCCTGGCGGTGTC+GGG | 0.275992 | 3_4:-27242598 | Msa0496450:CDS |
| TGTGTGAGGCCTGGCGGTGT+CGG | 0.283706 | 3_4:-27242599 | Msa0496450:CDS |
| ATGGCTGCAGCAGGACTTCC+TGG | 0.305505 | 3_4:+27242962 | None:intergenic |
| GGCCCATGAAGCTTTGGTTT+TGG | 0.323674 | 3_4:+27240863 | None:intergenic |
| CTCTCAACAGCCACGCTAAT+CGG | 0.330105 | 3_4:-27242553 | Msa0496450:CDS |
| CCATCAGTGCTGCTGAGATT+AGG | 0.336376 | 3_4:-27242637 | Msa0496450:CDS |
| GCCATGTTAGCGGCCACTTG+TGG | 0.347945 | 3_4:+27243019 | None:intergenic |
| AGCCTATGAAGCTTTGGTTT+TGG | 0.352767 | 3_4:+27240632 | None:intergenic |
| TTGGTTGAACGGTAGTTAGC+TGG | 0.354791 | 3_4:-27240667 | Msa0496450:three_prime_UTR |
| TTGGTTGAACGGTAGTTAGC+TGG | 0.354791 | 3_4:-27240903 | Msa0496450:three_prime_UTR |
| CATCAGTGCTGCTGAGATTA+GGG | 0.357619 | 3_4:-27242636 | Msa0496450:CDS |
| CCATGTTAGCGGCCACTTGT+GGG | 0.359786 | 3_4:+27243020 | None:intergenic |
| AAAACTTTCTGATGTGTTAA+CGG | 0.360481 | 3_4:-27242516 | Msa0496450:intron |
| GCCGCTTGCATGGCTGCAGC+AGG | 0.364075 | 3_4:+27242953 | None:intergenic |
| TATGTTGGCCCATGAAGCTT+TGG | 0.373622 | 3_4:+27240857 | None:intergenic |
| CACTTTGTGCCTATGAATAT+GGG | 0.375801 | 3_4:-27242761 | Msa0496450:CDS |
| CGGATAAGCTGGTGGCGGAC+AGG | 0.381930 | 3_4:-27241231 | Msa0496450:CDS |
| TATGTTAGCCTATGAAGCTT+TGG | 0.382110 | 3_4:+27240626 | None:intergenic |
| GCCTGGCGGTGTCGGGGCGA+CGG | 0.386365 | 3_4:-27242591 | Msa0496450:CDS |
| ATGCCAAAACCAAAGCTTCA+TGG | 0.386758 | 3_4:-27240866 | Msa0496450:three_prime_UTR |
| GCCGTCGCCCCGACACCGCC+AGG | 0.387638 | 3_4:+27242590 | None:intergenic |
| TGCCAAAACCAAAGCTTCAT+AGG | 0.390499 | 3_4:-27240634 | Msa0496450:three_prime_UTR |
| GAAAACATCACCGTATTTGA+TGG | 0.395353 | 3_4:+27243078 | None:intergenic |
| GTTAATCTCTTCTTGAAGCC+TGG | 0.405950 | 3_4:+27243108 | None:intergenic |
| GCGGTTGATGGTCAGATTAT+AGG | 0.409172 | 3_4:-27242806 | Msa0496450:CDS |
| CTTCTTGAAGCCTGGTTGGT+TGG | 0.415684 | 3_4:+27243116 | None:intergenic |
| GTTGTGACGGAGGCGGTTGA+TGG | 0.427340 | 3_4:-27242818 | Msa0496450:CDS |
| GAAGCCTGGTTGGTTGGCCA+TGG | 0.430327 | 3_4:+27243122 | None:intergenic |
| GCCTATGAATATGGGCTTTG+CGG | 0.430604 | 3_4:-27242753 | Msa0496450:CDS |
| GTTAGAAGTGGCGGGGATAT+CGG | 0.431798 | 3_4:-27242696 | Msa0496450:CDS |
| TAGAACAGCAATTTCAAACT+AGG | 0.434039 | 3_4:+27240743 | None:intergenic |
| TAGAACAGCAATTTCAAACT+AGG | 0.434039 | 3_4:+27240979 | None:intergenic |
| ATAGGCACAAAGTGCGCGTC+AGG | 0.451108 | 3_4:+27242770 | None:intergenic |
| ATCTCTTCTTGAAGCCTGGT+TGG | 0.457290 | 3_4:+27243112 | None:intergenic |
| GATATCGGTTGGTGATAAAC+CGG | 0.458559 | 3_4:-27242681 | Msa0496450:CDS |
| GATCATTGCGGCCGCTTGCA+TGG | 0.469213 | 3_4:+27242943 | None:intergenic |
| TCGTCATGGTATAGCAGAAA+TGG | 0.469856 | 3_4:-27242891 | Msa0496450:CDS |
| GGATAAGCTGGTGGCGGACA+GGG | 0.474816 | 3_4:-27241230 | Msa0496450:CDS |
| TCTTTGGTTGAAGAAGGGTT+TGG | 0.477120 | 3_4:+27243164 | None:intergenic |
| GGAGAGAGGTGTGTGAGGCC+TGG | 0.480169 | 3_4:-27242608 | Msa0496450:CDS |
| CCCACAAGTGGCCGCTAACA+TGG | 0.487849 | 3_4:-27243020 | Msa0496450:CDS |
| CCTAATCTCAGCAGCACTGA+TGG | 0.492034 | 3_4:+27242637 | None:intergenic |
| AACCAAGAACCCATCAAATA+CGG | 0.492643 | 3_4:-27243088 | Msa0496450:CDS |
| ATAGGATGCGGCGGATAAGC+TGG | 0.493945 | 3_4:-27241242 | Msa0496450:intron |
| CGTTCAACCAAGAAAATCAA+TGG | 0.496664 | 3_4:+27240679 | None:intergenic |
| CGTTCAACCAAGAAAATCAA+TGG | 0.496664 | 3_4:+27240915 | None:intergenic |
| ATCACATTGATTCTATATGT+TGG | 0.498117 | 3_4:+27240842 | None:intergenic |
| TTCTGCTGCAGCCATGTTAG+CGG | 0.499845 | 3_4:+27243009 | None:intergenic |
| TCCTGCTGCAGCCATGCAAG+CGG | 0.501385 | 3_4:-27242954 | Msa0496450:CDS |
| TGGTTGAACGGTAGTTAGCT+GGG | 0.502681 | 3_4:-27240666 | Msa0496450:three_prime_UTR |
| TGGTTGAACGGTAGTTAGCT+GGG | 0.502681 | 3_4:-27240902 | Msa0496450:three_prime_UTR |
| TGCCAAAACCAAAGCTTCAT+GGG | 0.502813 | 3_4:-27240865 | Msa0496450:three_prime_UTR |
| GCCGCAAAGCCCATATTCAT+AGG | 0.505709 | 3_4:+27242752 | None:intergenic |
| GAGCTTAGCTGTTGTGGCCA+TGG | 0.506595 | 3_4:+27241102 | None:intergenic |
| CAATGGCTCGTTGGTCGTCA+TGG | 0.509926 | 3_4:-27242905 | Msa0496450:CDS |
| TGTGAGGCCTGGCGGTGTCG+GGG | 0.521665 | 3_4:-27242597 | Msa0496450:CDS |
| AAAACATCACCGTATTTGAT+GGG | 0.527182 | 3_4:+27243079 | None:intergenic |
| TGGTGGAATAGCTGCATCCA+TGG | 0.532996 | 3_4:-27241119 | Msa0496450:CDS |
| GGAGAGGCGTTAGAAGTGGC+GGG | 0.533131 | 3_4:-27242704 | Msa0496450:CDS |
| AGAACAGCAATTTCAAACTA+GGG | 0.533994 | 3_4:+27240744 | None:intergenic |
| AGAACAGCAATTTCAAACTA+GGG | 0.533994 | 3_4:+27240980 | None:intergenic |
| AGGCCTCACACACCTCTCTC+CGG | 0.534996 | 3_4:+27242610 | None:intergenic |
| TGCCGACCGTCGTGTTGTGA+CGG | 0.537709 | 3_4:-27242831 | Msa0496450:CDS |
| GAAGGGTTTGGAAATTTGAG+TGG | 0.550972 | 3_4:+27243176 | None:intergenic |
| ATGGTTGAGCTTAGCTGTTG+TGG | 0.554386 | 3_4:+27241096 | None:intergenic |
| TCAGCATCGTTCTGATCCAC+CGG | 0.561215 | 3_4:+27242662 | None:intergenic |
| GTTTGGAAATTTGAGTGGAG+TGG | 0.563850 | 3_4:+27243181 | None:intergenic |
| GCTGCTGAGATTAGGGCTAC+CGG | 0.568023 | 3_4:-27242629 | Msa0496450:CDS |
| CATGTTAGCGGCCACTTGTG+GGG | 0.571385 | 3_4:+27243021 | None:intergenic |
| CTCCGTCACAACACGACGGT+CGG | 0.572167 | 3_4:+27242829 | None:intergenic |
| CCGTCGTGTTGTGACGGAGG+CGG | 0.578384 | 3_4:-27242825 | Msa0496450:CDS |
| GCATCTGCACAATGGCTCGT+TGG | 0.578751 | 3_4:-27242914 | Msa0496450:CDS |
| GATGACGATCCGATCACTAT+CGG | 0.581623 | 3_4:-27242725 | Msa0496450:CDS |
| CGGAGAGGCGTTAGAAGTGG+CGG | 0.590961 | 3_4:-27242705 | Msa0496450:CDS |
| AACGCCTCTCCGATAGTGAT+CGG | 0.591968 | 3_4:+27242716 | None:intergenic |
| TGAGCCATGGCCAACCAACC+AGG | 0.605511 | 3_4:-27243126 | Msa0496450:CDS |
| TGAGACAATCTCCCCACAAG+TGG | 0.610093 | 3_4:-27243032 | Msa0496450:CDS |
| GAAGTGGCGGGGATATCGGT+TGG | 0.611879 | 3_4:-27242692 | Msa0496450:CDS |
| TGCGGCGGATAAGCTGGTGG+CGG | 0.616093 | 3_4:-27241236 | Msa0496450:CDS |
| TATCGGAGAGGCGTTAGAAG+TGG | 0.617007 | 3_4:-27242708 | Msa0496450:CDS |
| TAAGCTGGTGGCGGACAGGG+CGG | 0.617043 | 3_4:-27241227 | Msa0496450:CDS |
| AGATTAGGGCTACCGGAGAG+AGG | 0.625834 | 3_4:-27242622 | Msa0496450:CDS |
| TAATTGCAAATAAACTCACT+AGG | 0.625907 | 3_4:+27240709 | None:intergenic |
| TAATTGCAAATAAACTCACT+AGG | 0.625907 | 3_4:+27240945 | None:intergenic |
| ATGGATGCAGCTATTCCACC+AGG | 0.630413 | 3_4:+27241121 | None:intergenic |
| ATGATGAATATTGCTGAACC+TGG | 0.635512 | 3_4:-27241139 | Msa0496450:CDS |
| ATGAATATTGCTGAACCTGG+TGG | 0.635922 | 3_4:-27241136 | Msa0496450:CDS |
| GGTTGAACGGTAGTTAGCTG+GGG | 0.636122 | 3_4:-27240665 | Msa0496450:three_prime_UTR |
| GGTTGAACGGTAGTTAGCTG+GGG | 0.636122 | 3_4:-27240901 | Msa0496450:three_prime_UTR |
| ATCGGTTGGTGATAAACCGG+TGG | 0.639207 | 3_4:-27242678 | Msa0496450:CDS |
| AAACACAACACAATGAGCCA+TGG | 0.639243 | 3_4:-27243139 | Msa0496450:exon |
| CTACCGGAGAGAGGTGTGTG+AGG | 0.640214 | 3_4:-27242613 | Msa0496450:CDS |
| TGTATATATATAGGATGCGG+CGG | 0.642444 | 3_4:-27241251 | Msa0496450:intron |
| ATTAGCGTGGCTGTTGAGAG+CGG | 0.645143 | 3_4:+27242556 | None:intergenic |
| CGACCGTCGTGTTGTGACGG+AGG | 0.646821 | 3_4:-27242828 | Msa0496450:CDS |
| TCAGATTATAGGACGGCGCG+TGG | 0.654489 | 3_4:-27242795 | Msa0496450:CDS |
| AGGAAATTAGTAAAAGACCA+TGG | 0.665507 | 3_4:+27241060 | None:intergenic |
| TCAACGAGGCATCTGCACAA+TGG | 0.666804 | 3_4:-27242922 | Msa0496450:CDS |
| TCTCTTCAATCCGATTAGCG+TGG | 0.674286 | 3_4:+27242543 | None:intergenic |
| CCATGAAACATGAAGAACCA+TGG | 0.674649 | 3_4:-27241077 | Msa0496450:exon |
| AGAAGCTGTGTATGATGCAG+AGG | 0.680635 | 3_4:-27241188 | Msa0496450:CDS |
| GAGAGGCGTTAGAAGTGGCG+GGG | 0.680725 | 3_4:-27242703 | Msa0496450:CDS |
| AGATGCCTCGTTGATCATTG+CGG | 0.682722 | 3_4:+27242931 | None:intergenic |
| TTGATGGTCAGATTATAGGA+CGG | 0.688715 | 3_4:-27242802 | Msa0496450:CDS |
| AATATTCATCATTTGCTGTG+TGG | 0.693485 | 3_4:+27241150 | None:intergenic |
| GAGAGGTGTGTGAGGCCTGG+CGG | 0.694862 | 3_4:-27242605 | Msa0496450:CDS |
| GCTAACATATAGAGTCAATG+TGG | 0.700394 | 3_4:-27240612 | Msa0496450:three_prime_UTR |
| GGATGCGGCGGATAAGCTGG+TGG | 0.723628 | 3_4:-27241239 | Msa0496450:CDS |
| CGATCCGATCACTATCGGAG+AGG | 0.731692 | 3_4:-27242720 | Msa0496450:CDS |
| AGCGGCCGCAATGATCAACG+AGG | 0.739216 | 3_4:-27242936 | Msa0496450:CDS |
| CCGCCTCCGTCACAACACGA+CGG | 0.744880 | 3_4:+27242825 | None:intergenic |
| TGTTCGTGTGACAGAAACAA+CGG | 0.764152 | 3_4:-27242855 | Msa0496450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAAGATTATAATTGATT+AGG | - | chr3_4:27241341-27241360 | Msa0496450:intron | 15.0% |
| !!! | CATGTTATTATTATGTTTTT+TGG | - | chr3_4:27241574-27241593 | Msa0496450:intron | 15.0% |
| !!! | AATTTTGTGAAATTGTAATA+TGG | - | chr3_4:27242215-27242234 | Msa0496450:intron | 15.0% |
| !! | TTAACTAAAATATATGTTGA+AGG | - | chr3_4:27242239-27242258 | Msa0496450:intron | 15.0% |
| !! | TAACTAAAATATATGTTGAA+GGG | - | chr3_4:27242240-27242259 | Msa0496450:intron | 15.0% |
| !!! | CTTATTTTAACAAAACAAAA+AGG | + | chr3_4:27242742-27242761 | None:intergenic | 15.0% |
| !!! | CTTATTTTAACAAAACAAAA+AGG | + | chr3_4:27242742-27242761 | None:intergenic | 15.0% |
| !!! | TGATTAGTTAGTTAAATACT+TGG | - | chr3_4:27241372-27241391 | Msa0496450:intron | 20.0% |
| !!! | TTTATTTTTTAGTGTGTGTT+TGG | - | chr3_4:27241728-27241747 | Msa0496450:intron | 20.0% |
| !! | TGTAGAATTGAAATTTCATA+TGG | - | chr3_4:27242354-27242373 | Msa0496450:intron | 20.0% |
| !!! | AAATATTACAAAGTACTCAT+TGG | + | chr3_4:27242498-27242517 | None:intergenic | 20.0% |
| !!! | GAGTACTTTGTAATATTTTT+TGG | - | chr3_4:27242500-27242519 | Msa0496450:intron | 20.0% |
| !!! | TACTTTGTAATATTTTTTGG+TGG | - | chr3_4:27242503-27242522 | Msa0496450:intron | 20.0% |
| !!! | TTTTTTCTTTGGTTGAAGAA+GGG | + | chr3_4:27240623-27240642 | None:intergenic | 25.0% |
| !!! | ATTGTGTTGTGTTTTTTCTT+TGG | + | chr3_4:27240634-27240653 | None:intergenic | 25.0% |
| ! | AAAACTTTCTGATGTGTTAA+CGG | - | chr3_4:27241263-27241282 | Msa0496450:intron | 25.0% |
| ! | TTAGTTAGTTAAATACTTGG+AGG | - | chr3_4:27241375-27241394 | Msa0496450:intron | 25.0% |
| !!! | CCAATTTGTAGCTTTATATA+TGG | + | chr3_4:27241642-27241661 | None:intergenic | 25.0% |
| ! | CCATATATAAAGCTACAAAT+TGG | - | chr3_4:27241639-27241658 | Msa0496450:intron | 25.0% |
| ! | TGTTTGGTATTATGGATTTA+CGG | - | chr3_4:27241744-27241763 | Msa0496450:intron | 25.0% |
| ! | TTGATGAGCAAAATTGATAT+AGG | - | chr3_4:27242183-27242202 | Msa0496450:intron | 25.0% |
| ! | TAATTGCAAATAAACTCACT+AGG | + | chr3_4:27242837-27242856 | None:intergenic | 25.0% |
| !!! | ATCACATTGATTCTATATGT+TGG | + | chr3_4:27242940-27242959 | None:intergenic | 25.0% |
| ! | TAATTGCAAATAAACTCACT+AGG | + | chr3_4:27242837-27242856 | None:intergenic | 25.0% |
| !!! | GTTTTTTCTTTGGTTGAAGA+AGG | + | chr3_4:27240624-27240643 | None:intergenic | 30.0% |
| AAAACATCACCGTATTTGAT+GGG | + | chr3_4:27240703-27240722 | None:intergenic | 30.0% | |
| AAGCACTTATAGTGAATGTA+AGG | - | chr3_4:27241408-27241427 | Msa0496450:intron | 30.0% | |
| TTAGTGTGTGTTTGGTATTA+TGG | - | chr3_4:27241736-27241755 | Msa0496450:intron | 30.0% | |
| TCTTAGTGTGTTTGGTATTA+TGG | - | chr3_4:27241866-27241885 | Msa0496450:intron | 30.0% | |
| GAAACCATATATAAGCAACT+CGG | - | chr3_4:27241952-27241971 | Msa0496450:intron | 30.0% | |
| GTAGTGTTTGTTTGGTATTA+CGG | - | chr3_4:27242012-27242031 | Msa0496450:intron | 30.0% | |
| !! | GTGTAGCTTTTGAAAAATCA+CGG | - | chr3_4:27242086-27242105 | Msa0496450:intron | 30.0% |
| ATGAGCAAAATTGATATAGG+TGG | - | chr3_4:27242186-27242205 | Msa0496450:intron | 30.0% | |
| !! | TTGGTGGTGTGTATATATAT+AGG | - | chr3_4:27242519-27242538 | Msa0496450:CDS | 30.0% |
| GTGTGTATATATATAGGATG+CGG | - | chr3_4:27242525-27242544 | Msa0496450:CDS | 30.0% | |
| !! | AATATTCATCATTTGCTGTG+TGG | + | chr3_4:27242632-27242651 | None:intergenic | 30.0% |
| AGGAAATTAGTAAAAGACCA+TGG | + | chr3_4:27242722-27242741 | None:intergenic | 30.0% | |
| AGAACAGCAATTTCAAACTA+GGG | + | chr3_4:27242802-27242821 | None:intergenic | 30.0% | |
| TAGAACAGCAATTTCAAACT+AGG | + | chr3_4:27242803-27242822 | None:intergenic | 30.0% | |
| !!! | CATTGATTTTCTTGGTTGAA+CGG | - | chr3_4:27242865-27242884 | Msa0496450:CDS | 30.0% |
| AGAACAGCAATTTCAAACTA+GGG | + | chr3_4:27242802-27242821 | None:intergenic | 30.0% | |
| TAGAACAGCAATTTCAAACT+AGG | + | chr3_4:27242803-27242822 | None:intergenic | 30.0% | |
| !!! | CATTGATTTTCTTGGTTGAA+CGG | - | chr3_4:27242865-27242884 | Msa0496450:CDS | 30.0% |
| AACCAAGAACCCATCAAATA+CGG | - | chr3_4:27240691-27240710 | Msa0496450:three_prime_UTR | 35.0% | |
| GAAAACATCACCGTATTTGA+TGG | + | chr3_4:27240704-27240723 | None:intergenic | 35.0% | |
| ! | CAGCAGAATTCAACGTTTTA+GGG | - | chr3_4:27240785-27240804 | Msa0496450:three_prime_UTR | 35.0% |
| ! | TTGATGGTCAGATTATAGGA+CGG | - | chr3_4:27240977-27240996 | Msa0496450:three_prime_UTR | 35.0% |
| CACTTTGTGCCTATGAATAT+GGG | - | chr3_4:27241018-27241037 | Msa0496450:three_prime_UTR | 35.0% | |
| GATATATACTAACGTGCGTT+TGG | + | chr3_4:27241674-27241693 | None:intergenic | 35.0% | |
| ! | TAAGTGTCTGTTCGTTTTAG+TGG | + | chr3_4:27241700-27241719 | None:intergenic | 35.0% |
| TTGGTATTATGGATTTACGG+TGG | - | chr3_4:27241747-27241766 | Msa0496450:intron | 35.0% | |
| TGGTATTATGGATTTACGGT+GGG | - | chr3_4:27241748-27241767 | Msa0496450:intron | 35.0% | |
| GTGTAGCTTCTACAATATCA+CGG | + | chr3_4:27241797-27241816 | None:intergenic | 35.0% | |
| TAATCAACTTAGTGCGTGTT+TGG | - | chr3_4:27241841-27241860 | Msa0496450:intron | 35.0% | |
| GTTTGGTATCTTAGTGTGTT+TGG | - | chr3_4:27241858-27241877 | Msa0496450:intron | 35.0% | |
| AGTGTGTTTGGTATTATGGT+AGG | - | chr3_4:27241870-27241889 | Msa0496450:intron | 35.0% | |
| !! | ATATATAAGCAACTCGGTGT+CGG | - | chr3_4:27241958-27241977 | Msa0496450:intron | 35.0% |
| TGTTTGGTACTCAGTGTATT+TGG | - | chr3_4:27241985-27242004 | Msa0496450:intron | 35.0% | |
| TTGGTATCGTAGTGTTTGTT+TGG | - | chr3_4:27242004-27242023 | Msa0496450:intron | 35.0% | |
| GTATCAGTTTGTCAGAATCT+CGG | + | chr3_4:27242119-27242138 | None:intergenic | 35.0% | |
| AAGCAAAGCTAGAATCAAAG+TGG | + | chr3_4:27242141-27242160 | None:intergenic | 35.0% | |
| TCTCTGCTGGAAAATGTAAT+TGG | + | chr3_4:27242416-27242435 | None:intergenic | 35.0% | |
| ! | ACCTAGTTAGTACTCTTTTG+CGG | + | chr3_4:27242453-27242472 | None:intergenic | 35.0% |
| TGTATATATATAGGATGCGG+CGG | - | chr3_4:27242528-27242547 | Msa0496450:CDS | 35.0% | |
| ATGATGAATATTGCTGAACC+TGG | - | chr3_4:27242640-27242659 | Msa0496450:CDS | 35.0% | |
| !!! | GTTGTAGCCATTGATTTTCT+TGG | - | chr3_4:27242857-27242876 | Msa0496450:CDS | 35.0% |
| CGTTCAACCAAGAAAATCAA+TGG | + | chr3_4:27242867-27242886 | None:intergenic | 35.0% | |
| !!! | GTTGTAGCCATTGATTTTCT+TGG | - | chr3_4:27242857-27242876 | Msa0496450:CDS | 35.0% |
| CGTTCAACCAAGAAAATCAA+TGG | + | chr3_4:27242867-27242886 | None:intergenic | 35.0% | |
| ! | TATGTTAGCCTATGAAGCTT+TGG | + | chr3_4:27243156-27243175 | None:intergenic | 35.0% |
| GCTAACATATAGAGTCAATG+TGG | - | chr3_4:27243167-27243186 | Msa0496450:five_prime_UTR | 35.0% | |
| GTTTGGAAATTTGAGTGGAG+TGG | + | chr3_4:27240601-27240620 | None:intergenic | 40.0% | |
| GAAGGGTTTGGAAATTTGAG+TGG | + | chr3_4:27240606-27240625 | None:intergenic | 40.0% | |
| TCTTTGGTTGAAGAAGGGTT+TGG | + | chr3_4:27240618-27240637 | None:intergenic | 40.0% | |
| AAACACAACACAATGAGCCA+TGG | - | chr3_4:27240640-27240659 | Msa0496450:three_prime_UTR | 40.0% | |
| GTTAATCTCTTCTTGAAGCC+TGG | + | chr3_4:27240674-27240693 | None:intergenic | 40.0% | |
| ! | GCAGCAGAATTCAACGTTTT+AGG | - | chr3_4:27240784-27240803 | Msa0496450:three_prime_UTR | 40.0% |
| TCGTCATGGTATAGCAGAAA+TGG | - | chr3_4:27240888-27240907 | Msa0496450:three_prime_UTR | 40.0% | |
| TGTTCGTGTGACAGAAACAA+CGG | - | chr3_4:27240924-27240943 | Msa0496450:three_prime_UTR | 40.0% | |
| GCACTTTGTGCCTATGAATA+TGG | - | chr3_4:27241017-27241036 | Msa0496450:three_prime_UTR | 40.0% | |
| !! | GATATCGGTTGGTGATAAAC+CGG | - | chr3_4:27241098-27241117 | Msa0496450:CDS | 40.0% |
| !! | TGTCTGTTCGTTTTAGTGGT+AGG | + | chr3_4:27241696-27241715 | None:intergenic | 40.0% |
| CGGTGGGTATACCATAATTA+CGG | - | chr3_4:27241764-27241783 | Msa0496450:intron | 40.0% | |
| ACGGTAGATGACCGTAATTA+TGG | + | chr3_4:27241778-27241797 | None:intergenic | 40.0% | |
| GACACCGAGTTGCTTATATA+TGG | + | chr3_4:27241959-27241978 | None:intergenic | 40.0% | |
| ACGACAGATAACTGTGATTC+TGG | + | chr3_4:27242046-27242065 | None:intergenic | 40.0% | |
| CTTTCATGACTAATCTCTGC+TGG | + | chr3_4:27242429-27242448 | None:intergenic | 40.0% | |
| !! | TCCGCAAAAGAGTACTAACT+AGG | - | chr3_4:27242449-27242468 | Msa0496450:intron | 40.0% |
| GAGTACTAACTAGGTTGTCT+AGG | - | chr3_4:27242458-27242477 | Msa0496450:intron | 40.0% | |
| ATGAATATTGCTGAACCTGG+TGG | - | chr3_4:27242643-27242662 | Msa0496450:CDS | 40.0% | |
| CCATGGTTCTTCATGTTTCA+TGG | + | chr3_4:27242705-27242724 | None:intergenic | 40.0% | |
| CCATGAAACATGAAGAACCA+TGG | - | chr3_4:27242702-27242721 | Msa0496450:CDS | 40.0% | |
| ATGCCAAAACCAAAGCTTCA+TGG | - | chr3_4:27242913-27242932 | Msa0496450:CDS | 40.0% | |
| TGCCAAAACCAAAGCTTCAT+GGG | - | chr3_4:27242914-27242933 | Msa0496450:CDS | 40.0% | |
| TGCCAAAACCAAAGCTTCAT+AGG | - | chr3_4:27242914-27242933 | Msa0496450:CDS | 40.0% | |
| !! | AGCCTATGAAGCTTTGGTTT+TGG | + | chr3_4:27243150-27243169 | None:intergenic | 40.0% |
| ATCTCTTCTTGAAGCCTGGT+TGG | + | chr3_4:27240670-27240689 | None:intergenic | 45.0% | |
| !! | CACCGTATTTGATGGGTTCT+TGG | + | chr3_4:27240696-27240715 | None:intergenic | 45.0% |
| ! | GGTGATGTTTTCAACGTCTC+TGG | - | chr3_4:27240712-27240731 | Msa0496450:three_prime_UTR | 45.0% |
| AGATGCCTCGTTGATCATTG+CGG | + | chr3_4:27240851-27240870 | None:intergenic | 45.0% | |
| !! | GCGGTTGATGGTCAGATTAT+AGG | - | chr3_4:27240973-27240992 | Msa0496450:three_prime_UTR | 45.0% |
| GCCTATGAATATGGGCTTTG+CGG | - | chr3_4:27241026-27241045 | Msa0496450:three_prime_UTR | 45.0% | |
| GATGACGATCCGATCACTAT+CGG | - | chr3_4:27241054-27241073 | Msa0496450:three_prime_UTR | 45.0% | |
| ! | CATCAGTGCTGCTGAGATTA+GGG | - | chr3_4:27241143-27241162 | Msa0496450:CDS | 45.0% |
| TCTCTTCAATCCGATTAGCG+TGG | + | chr3_4:27241239-27241258 | None:intergenic | 45.0% | |
| TGGTAGGTATGCCAGAATCA+CGG | - | chr3_4:27241886-27241905 | Msa0496450:intron | 45.0% | |
| AGAAGCTGTGTATGATGCAG+AGG | - | chr3_4:27242591-27242610 | Msa0496450:CDS | 45.0% | |
| ATGGTTGAGCTTAGCTGTTG+TGG | + | chr3_4:27242686-27242705 | None:intergenic | 45.0% | |
| TTGGTTGAACGGTAGTTAGC+TGG | - | chr3_4:27242876-27242895 | Msa0496450:CDS | 45.0% | |
| TGGTTGAACGGTAGTTAGCT+GGG | - | chr3_4:27242877-27242896 | Msa0496450:CDS | 45.0% | |
| TATGTTGGCCCATGAAGCTT+TGG | + | chr3_4:27242925-27242944 | None:intergenic | 45.0% | |
| TTGGTTGAACGGTAGTTAGC+TGG | - | chr3_4:27242876-27242895 | Msa0496450:CDS | 45.0% | |
| TGGTTGAACGGTAGTTAGCT+GGG | - | chr3_4:27242877-27242896 | Msa0496450:CDS | 45.0% | |
| CTTCTTGAAGCCTGGTTGGT+TGG | + | chr3_4:27240666-27240685 | None:intergenic | 50.0% | |
| TGAGACAATCTCCCCACAAG+TGG | - | chr3_4:27240747-27240766 | Msa0496450:three_prime_UTR | 50.0% | |
| TTCTGCTGCAGCCATGTTAG+CGG | + | chr3_4:27240773-27240792 | None:intergenic | 50.0% | |
| !!! | GTTTTAGGGCATGCACAACC+AGG | - | chr3_4:27240799-27240818 | Msa0496450:three_prime_UTR | 50.0% |
| ! | TCAACGAGGCATCTGCACAA+TGG | - | chr3_4:27240857-27240876 | Msa0496450:three_prime_UTR | 50.0% |
| GCCGCAAAGCCCATATTCAT+AGG | + | chr3_4:27241030-27241049 | None:intergenic | 50.0% | |
| AACGCCTCTCCGATAGTGAT+CGG | + | chr3_4:27241066-27241085 | None:intergenic | 50.0% | |
| !! | TATCGGAGAGGCGTTAGAAG+TGG | - | chr3_4:27241071-27241090 | Msa0496450:exon | 50.0% |
| ! | GTTAGAAGTGGCGGGGATAT+CGG | - | chr3_4:27241083-27241102 | Msa0496450:exon | 50.0% |
| !! | ATCGGTTGGTGATAAACCGG+TGG | - | chr3_4:27241101-27241120 | Msa0496450:CDS | 50.0% |
| TCAGCATCGTTCTGATCCAC+CGG | + | chr3_4:27241120-27241139 | None:intergenic | 50.0% | |
| ! | CCTAATCTCAGCAGCACTGA+TGG | + | chr3_4:27241145-27241164 | None:intergenic | 50.0% |
| ! | CCATCAGTGCTGCTGAGATT+AGG | - | chr3_4:27241142-27241161 | Msa0496450:CDS | 50.0% |
| ATTAGCGTGGCTGTTGAGAG+CGG | + | chr3_4:27241226-27241245 | None:intergenic | 50.0% | |
| CTCTCAACAGCCACGCTAAT+CGG | - | chr3_4:27241226-27241245 | Msa0496450:CDS | 50.0% | |
| ACGACAGATGACCGTGATTC+TGG | + | chr3_4:27241900-27241919 | None:intergenic | 50.0% | |
| ATGGATGCAGCTATTCCACC+AGG | + | chr3_4:27242661-27242680 | None:intergenic | 50.0% | |
| TGGTGGAATAGCTGCATCCA+TGG | - | chr3_4:27242660-27242679 | Msa0496450:CDS | 50.0% | |
| GGTTGAACGGTAGTTAGCTG+GGG | - | chr3_4:27242878-27242897 | Msa0496450:CDS | 50.0% | |
| !! | GGCCCATGAAGCTTTGGTTT+TGG | + | chr3_4:27242919-27242938 | None:intergenic | 50.0% |
| GGTTGAACGGTAGTTAGCTG+GGG | - | chr3_4:27242878-27242897 | Msa0496450:CDS | 50.0% | |
| CATGTTAGCGGCCACTTGTG+GGG | + | chr3_4:27240761-27240780 | None:intergenic | 55.0% | |
| CCATGTTAGCGGCCACTTGT+GGG | + | chr3_4:27240762-27240781 | None:intergenic | 55.0% | |
| GCATCTGCACAATGGCTCGT+TGG | - | chr3_4:27240865-27240884 | Msa0496450:three_prime_UTR | 55.0% | |
| CAATGGCTCGTTGGTCGTCA+TGG | - | chr3_4:27240874-27240893 | Msa0496450:three_prime_UTR | 55.0% | |
| TCAGATTATAGGACGGCGCG+TGG | - | chr3_4:27240984-27241003 | Msa0496450:three_prime_UTR | 55.0% | |
| ATAGGCACAAAGTGCGCGTC+AGG | + | chr3_4:27241012-27241031 | None:intergenic | 55.0% | |
| CGATCCGATCACTATCGGAG+AGG | - | chr3_4:27241059-27241078 | Msa0496450:three_prime_UTR | 55.0% | |
| GCTGCTGAGATTAGGGCTAC+CGG | - | chr3_4:27241150-27241169 | Msa0496450:CDS | 55.0% | |
| AGATTAGGGCTACCGGAGAG+AGG | - | chr3_4:27241157-27241176 | Msa0496450:CDS | 55.0% | |
| !! | ACTCGGTGTCGGTGTGTGTT+TGG | - | chr3_4:27241969-27241988 | Msa0496450:intron | 55.0% |
| ATAGGATGCGGCGGATAAGC+TGG | - | chr3_4:27242537-27242556 | Msa0496450:CDS | 55.0% | |
| GAGCTTAGCTGTTGTGGCCA+TGG | + | chr3_4:27242680-27242699 | None:intergenic | 55.0% | |
| TGAGCCATGGCCAACCAACC+AGG | - | chr3_4:27240653-27240672 | Msa0496450:three_prime_UTR | 60.0% | |
| ! | GAAGCCTGGTTGGTTGGCCA+TGG | + | chr3_4:27240660-27240679 | None:intergenic | 60.0% |
| CCCACAAGTGGCCGCTAACA+TGG | - | chr3_4:27240759-27240778 | Msa0496450:three_prime_UTR | 60.0% | |
| GCCATGTTAGCGGCCACTTG+TGG | + | chr3_4:27240763-27240782 | None:intergenic | 60.0% | |
| ATGGCTGCAGCAGGACTTCC+TGG | + | chr3_4:27240820-27240839 | None:intergenic | 60.0% | |
| TCCTGCTGCAGCCATGCAAG+CGG | - | chr3_4:27240825-27240844 | Msa0496450:three_prime_UTR | 60.0% | |
| GATCATTGCGGCCGCTTGCA+TGG | + | chr3_4:27240839-27240858 | None:intergenic | 60.0% | |
| AGCGGCCGCAATGATCAACG+AGG | - | chr3_4:27240843-27240862 | Msa0496450:three_prime_UTR | 60.0% | |
| TGCCGACCGTCGTGTTGTGA+CGG | - | chr3_4:27240948-27240967 | Msa0496450:three_prime_UTR | 60.0% | |
| CTCCGTCACAACACGACGGT+CGG | + | chr3_4:27240953-27240972 | None:intergenic | 60.0% | |
| ! | GTTGTGACGGAGGCGGTTGA+TGG | - | chr3_4:27240961-27240980 | Msa0496450:three_prime_UTR | 60.0% |
| !! | CGGAGAGGCGTTAGAAGTGG+CGG | - | chr3_4:27241074-27241093 | Msa0496450:exon | 60.0% |
| !! | GGAGAGGCGTTAGAAGTGGC+GGG | - | chr3_4:27241075-27241094 | Msa0496450:exon | 60.0% |
| !! | GAGAGGCGTTAGAAGTGGCG+GGG | - | chr3_4:27241076-27241095 | Msa0496450:exon | 60.0% |
| ! | GAAGTGGCGGGGATATCGGT+TGG | - | chr3_4:27241087-27241106 | Msa0496450:CDS | 60.0% |
| ! | CTACCGGAGAGAGGTGTGTG+AGG | - | chr3_4:27241166-27241185 | Msa0496450:CDS | 60.0% |
| AGGCCTCACACACCTCTCTC+CGG | + | chr3_4:27241172-27241191 | None:intergenic | 60.0% | |
| !! | GGATAAGCTGGTGGCGGACA+GGG | - | chr3_4:27242549-27242568 | Msa0496450:CDS | 60.0% |
| CGACCGTCGTGTTGTGACGG+AGG | - | chr3_4:27240951-27240970 | Msa0496450:three_prime_UTR | 65.0% | |
| CCGCCTCCGTCACAACACGA+CGG | + | chr3_4:27240957-27240976 | None:intergenic | 65.0% | |
| ! | CCGTCGTGTTGTGACGGAGG+CGG | - | chr3_4:27240954-27240973 | Msa0496450:three_prime_UTR | 65.0% |
| ! | GGAGAGAGGTGTGTGAGGCC+TGG | - | chr3_4:27241171-27241190 | Msa0496450:CDS | 65.0% |
| ! | GAGAGGTGTGTGAGGCCTGG+CGG | - | chr3_4:27241174-27241193 | Msa0496450:CDS | 65.0% |
| TGTGTGAGGCCTGGCGGTGT+CGG | - | chr3_4:27241180-27241199 | Msa0496450:CDS | 65.0% | |
| GGATGCGGCGGATAAGCTGG+TGG | - | chr3_4:27242540-27242559 | Msa0496450:CDS | 65.0% | |
| TGCGGCGGATAAGCTGGTGG+CGG | - | chr3_4:27242543-27242562 | Msa0496450:CDS | 65.0% | |
| !! | CGGATAAGCTGGTGGCGGAC+AGG | - | chr3_4:27242548-27242567 | Msa0496450:CDS | 65.0% |
| !! | TAAGCTGGTGGCGGACAGGG+CGG | - | chr3_4:27242552-27242571 | Msa0496450:CDS | 65.0% |
| GCCGCTTGCATGGCTGCAGC+AGG | + | chr3_4:27240829-27240848 | None:intergenic | 70.0% | |
| GTGTGAGGCCTGGCGGTGTC+GGG | - | chr3_4:27241181-27241200 | Msa0496450:CDS | 70.0% | |
| ! | TGTGAGGCCTGGCGGTGTCG+GGG | - | chr3_4:27241182-27241201 | Msa0496450:CDS | 70.0% |
| !! | GCCTGGCGGTGTCGGGGCGA+CGG | - | chr3_4:27241188-27241207 | Msa0496450:CDS | 80.0% |
| ! | GCCGTCGCCCCGACACCGCC+AGG | + | chr3_4:27241192-27241211 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 27240597 | 27243204 | 27240597 | ID=Msa0496450;Name=Msa0496450 |
| chr3_4 | mRNA | 27240597 | 27243204 | 27240597 | ID=Msa0496450-mRNA-1;Parent=Msa0496450;Name=Msa0496450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=55|1|1|1|1|1|2|490|268 |
| chr3_4 | exon | 27240597 | 27241260 | 27240597 | ID=Msa0496450-mRNA-1:exon:6456;Parent=Msa0496450-mRNA-1 |
| chr3_4 | exon | 27242517 | 27243204 | 27242517 | ID=Msa0496450-mRNA-1:exon:6455;Parent=Msa0496450-mRNA-1 |
| chr3_4 | five_prime_UTR | 27243150 | 27243204 | 27243150 | ID=Msa0496450-mRNA-1:five_prime_utr;Parent=Msa0496450-mRNA-1 |
| chr3_4 | CDS | 27242517 | 27243149 | 27242517 | ID=Msa0496450-mRNA-1:cds;Parent=Msa0496450-mRNA-1 |
| chr3_4 | CDS | 27241087 | 27241260 | 27241087 | ID=Msa0496450-mRNA-1:cds;Parent=Msa0496450-mRNA-1 |
| chr3_4 | three_prime_UTR | 27240597 | 27241086 | 27240597 | ID=Msa0496450-mRNA-1:three_prime_utr;Parent=Msa0496450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
