AlfalfaGEDB | Msa0971160

M. sativa cultivar zhongmu-4 / Msa0971160

KEGG: K07937
GO: -
PFAM: PF00025.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0971160	RWR79682.1	97.849	186	4	0	1	186	1	186	3.98e-132	378

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0971160	sp\|Q06396\|ARF1_ORYSJ	98.895	181	2	0	1	181	1	181	2.98e-133	373

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0971160	A0A4D9AID4	97.326	187	5	0	1	187	1	187	1.79e-132	379

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004540	Msa0971160	0.803488	3.403346e-49	-8.615850e-47
Msa0010490	Msa0971160	0.814639	1.390619e-51	-8.615850e-47
Msa0010500	Msa0971160	0.800553	1.365321e-48	-8.615850e-47
Msa0014830	Msa0971160	0.811394	7.157358e-51	-8.615850e-47
Msa0016510	Msa0971160	0.805065	1.597904e-49	-8.615850e-47
Msa0020390	Msa0971160	0.898514	4.925488e-77	-8.615850e-47
Msa0027260	Msa0971160	0.817395	3.371732e-52	-8.615850e-47
Msa0029260	Msa0971160	0.832452	9.378104e-56	-8.615850e-47
Msa0029630	Msa0971160	0.807580	4.715404e-50	-8.615850e-47
Msa0033880	Msa0971160	0.812306	4.531289e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0971160	MtrunA17_Chr6g0450081	99.448	181	1	0	1	181	1	181	6.49e-135	374
Msa0971160	MtrunA17_Chr7g0270301	99.444	180	1	0	1	180	1	180	1.86e-134	373
Msa0971160	MtrunA17_Chr5g0413451	98.895	181	2	0	1	181	1	181	2.99e-134	373
Msa0971160	MtrunA17_Chr5g0413441	98.895	181	2	0	1	181	1	181	2.99e-134	373
Msa0971160	MtrunA17_Chr1g0194261	98.343	181	3	0	1	181	1	181	8.10e-134	372
Msa0971160	MtrunA17_Chr5g0401761	86.188	181	25	0	1	181	1	181	3.80e-120	337
Msa0971160	MtrunA17_Chr4g0072861	63.128	179	66	0	1	179	1	179	9.00e-85	248
Msa0971160	MtrunA17_Chr5g0395631	61.582	177	68	0	1	177	1	177	3.35e-83	244
Msa0971160	MtrunA17_Chr4g0039591	60.452	177	70	0	1	177	1	177	1.84e-80	237
Msa0971160	MtrunA17_Chr5g0395641	55.495	182	79	1	1	180	1	182	1.77e-75	224

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0971160	AT5G14670.1	98.895	181	2	1	181	1	181	9.35e-134	372
Msa0971160	AT1G10630.1	98.343	181	3	1	181	1	181	1.26e-133	372
Msa0971160	AT1G10630.2	98.343	181	3	1	181	1	181	1.26e-133	372
Msa0971160	AT5G14670.2	98.343	181	3	1	181	1	181	1.72e-133	371
Msa0971160	AT5G14670.3	98.343	181	3	1	181	1	181	1.72e-133	371
Msa0971160	AT2G47170.2	98.343	181	3	1	181	1	181	3.35e-133	370
Msa0971160	AT2G47170.1	98.343	181	3	1	181	1	181	3.35e-133	370
Msa0971160	AT2G47170.3	98.343	181	3	1	181	1	181	3.35e-133	370
Msa0971160	AT1G23490.1	97.790	181	4	1	181	1	181	9.10e-133	369
Msa0971160	AT1G70490.2	97.790	181	4	1	181	1	181	9.10e-133	369

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Find 49 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAGACCCTGAGTGTTC+TGG	0.332007	6_4:+2813571	None:intergenic
AAATGAGAATGTTTATGATA+CGG	0.510550	6_4:+2816913	None:intergenic
AATTGAACTAACCAATGGTA+GGG	0.580228	6_4:+2816305	None:intergenic
ACTTGTGCAACTTCTGGAGA+GGG	0.603681	6_4:-2812572	Msa0971160:CDS
AGAACATCAGCTTCACCGTG+TGG	0.663793	6_4:-2814171	Msa0971160:CDS
AGACCGAGTGGTTGAGGCAA+GGG	0.502924	6_4:-2813526	Msa0971160:CDS
AGAGGGTCTTTACGAGGGTT+TGG	0.373805	6_4:-2812555	Msa0971160:CDS
AGCTTCACCGTGTGGGATGT+CGG	0.397098	6_4:-2814163	Msa0971160:CDS
AGGATTTAATGTTGAAACCG+TGG	0.626322	6_4:-2814200	Msa0971160:CDS
AGGCAAGGGATGAATTGCAC+AGG	0.586704	6_4:-2813512	Msa0971160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGAACTAACCAATGGTA+GGG	+	chr6_4:2813141-2813160	None:intergenic	30.0%
TTAGTAACGATCCTATAAGT+GGG	+	chr6_4:2813362-2813381	None:intergenic	30.0%
TTTAGTAACGATCCTATAAG+TGG	+	chr6_4:2813363-2813382	None:intergenic	30.0%
AATAATTGGTCGTGGTATTA+AGG	-	chr6_4:2813396-2813415	Msa0971160:intron	30.0%
TGGTATTAAGGCAAATTCTA+TGG	-	chr6_4:2813408-2813427	Msa0971160:intron	30.0%
CACAAATTTATTTCCACCAT+TGG	-	chr6_4:2813460-2813479	Msa0971160:intron	30.0%
GATGTGACTTTATGATCAAA+TGG	-	chr6_4:2813513-2813532	Msa0971160:CDS	30.0%
AAACAAACAGGCCTTTAATA+CGG	+	chr6_4:2813602-2813621	None:intergenic	30.0%
CGTGTAAGATATTCTCAAAT+TGG	-	chr6_4:2813663-2813682	Msa0971160:intron	30.0%
GTTTGAATAGGAAAAGAAGA+TGG	+	chr6_4:2814371-2814390	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	2812499	2816966	2812499	ID=Msa0971160;Name=Msa0971160
chr6_4	mRNA	2812499	2816966	2812499	ID=Msa0971160-mRNA-1;Parent=Msa0971160;Name=Msa0971160-mRNA-1;_AED=0.23;_eAED=0.23;_QI=176\|1\|0.83\|1\|0.8\|0.66\|6\|0\|188
chr6_4	exon	2812499	2812607	2812499	ID=Msa0971160-mRNA-1:exon:1411;Parent=Msa0971160-mRNA-1
chr6_4	exon	2812802	2812920	2812802	ID=Msa0971160-mRNA-1:exon:1410;Parent=Msa0971160-mRNA-1
chr6_4	exon	2813500	2813619	2813500	ID=Msa0971160-mRNA-1:exon:1409;Parent=Msa0971160-mRNA-1
chr6_4	exon	2814150	2814220	2814150	ID=Msa0971160-mRNA-1:exon:1408;Parent=Msa0971160-mRNA-1
chr6_4	exon	2816317	2816482	2816317	ID=Msa0971160-mRNA-1:exon:1407;Parent=Msa0971160-mRNA-1
chr6_4	exon	2816809	2816966	2816809	ID=Msa0971160-mRNA-1:exon:1406;Parent=Msa0971160-mRNA-1
chr6_4	five_prime_UTR	2816809	2816966	2816809	ID=Msa0971160-mRNA-1:five_prime_utr;Parent=Msa0971160-mRNA-1
chr6_4	five_prime_UTR	2816465	2816482	2816465	ID=Msa0971160-mRNA-1:five_prime_utr;Parent=Msa0971160-mRNA-1
chr6_4	CDS	2816317	2816464	2816317	ID=Msa0971160-mRNA-1:cds;Parent=Msa0971160-mRNA-1
chr6_4	CDS	2814150	2814220	2814150	ID=Msa0971160-mRNA-1:cds;Parent=Msa0971160-mRNA-1
chr6_4	CDS	2813500	2813619	2813500	ID=Msa0971160-mRNA-1:cds;Parent=Msa0971160-mRNA-1
chr6_4	CDS	2812802	2812920	2812802	ID=Msa0971160-mRNA-1:cds;Parent=Msa0971160-mRNA-1
chr6_4	CDS	2812499	2812607	2812499	ID=Msa0971160-mRNA-1:cds;Parent=Msa0971160-mRNA-1

Gene Sequence

>Msa0971160

ATGGGGTTAACGTTCACGAAGCTGTTCAGTAGGTTGTTTGCGAAGAAGGAGATGAGAATTTTGATGGTAGGTCTCGATGCGGCTGGTAAGACTACTATTTTGTATAAATTGAAGCTTGGAGAAATCGTTACTACCATCCCTACCATTGGATTTAATGTTGAAACCGTGGAGTACAAGAACATCAGCTTCACCGTGTGGGATGTCGGGGGTCAGGACAAGATTCGCCCATTGTGGAGGCATTACTTCCAGAACACTCAGGGTCTTATTTTTGTGGTTGATAGCAACGATAGAGACCGAGTGGTTGAGGCAAGGGATGAATTGCACAGGATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAACAAGATCTTCCAAATGCAATGAATGCTGCAGAAATAACTGACAAACTTGGACTTCATTCTCTCCGCCAACGCCACTGGTATATTCAGAGCACTTGTGCAACTTCTGGAGAGGGTCTTTACGAGGGTTTGGACTGGCTTTCTAACAACATTGCAAGCAAGGTAATTCAAAATGCTATACGCTTGTAG

Protein sequence

>Msa0971160

MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVIQNAIRL*