Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361490 | XP_013459878.1 | 92.621 | 515 | 9 | 4 | 1 | 508 | 1 | 493 | 0.0 | 955 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361490 | sp|Q6K687|C3H18_ORYSJ | 57.524 | 525 | 179 | 11 | 2 | 508 | 6 | 504 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361490 | A0A072UVS7 | 92.621 | 515 | 9 | 4 | 1 | 508 | 1 | 493 | 0.0 | 955 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0361490 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031990 | Msa0361490 | -0.801352 | 9.375982e-49 | -8.615850e-47 |
| Msa0032470 | Msa0361490 | 0.834187 | 3.463976e-56 | -8.615850e-47 |
| Msa0037880 | Msa0361490 | 0.801625 | 8.243912e-49 | -8.615850e-47 |
| Msa0043980 | Msa0361490 | 0.817816 | 2.710294e-52 | -8.615850e-47 |
| Msa0044000 | Msa0361490 | 0.807822 | 4.190130e-50 | -8.615850e-47 |
| Msa0044330 | Msa0361490 | 0.820312 | 7.330866e-53 | -8.615850e-47 |
| Msa0071250 | Msa0361490 | 0.828606 | 8.190305e-55 | -8.615850e-47 |
| Msa0072420 | Msa0361490 | 0.814265 | 1.682099e-51 | -8.615850e-47 |
| Msa0086420 | Msa0361490 | 0.820317 | 7.311397e-53 | -8.615850e-47 |
| Msa0090550 | Msa0361490 | 0.827963 | 1.170004e-54 | -8.615850e-47 |
| Msa0106710 | Msa0361490 | 0.805302 | 1.425552e-49 | -8.615850e-47 |
| Msa0106850 | Msa0361490 | 0.811619 | 6.393947e-51 | -8.615850e-47 |
| Msa0121870 | Msa0361490 | 0.802332 | 5.899329e-49 | -8.615850e-47 |
| Msa0127800 | Msa0361490 | 0.801117 | 1.047517e-48 | -8.615850e-47 |
| Msa0150230 | Msa0361490 | 0.820599 | 6.298920e-53 | -8.615850e-47 |
| Msa0167980 | Msa0361490 | 0.823787 | 1.147712e-53 | -8.615850e-47 |
| Msa0170220 | Msa0361490 | 0.821972 | 3.038321e-53 | -8.615850e-47 |
| Msa0171870 | Msa0361490 | 0.808535 | 2.953140e-50 | -8.615850e-47 |
| Msa0178570 | Msa0361490 | 0.808252 | 3.393719e-50 | -8.615850e-47 |
| Msa0183870 | Msa0361490 | 0.811739 | 6.022063e-51 | -8.615850e-47 |
| Msa0186950 | Msa0361490 | 0.814492 | 1.498777e-51 | -8.615850e-47 |
| Msa0204960 | Msa0361490 | 0.826121 | 3.228203e-54 | -8.615850e-47 |
| Msa0207670 | Msa0361490 | 0.803268 | 3.780790e-49 | -8.615850e-47 |
| Msa0209350 | Msa0361490 | 0.812830 | 3.480627e-51 | -8.615850e-47 |
| Msa0209500 | Msa0361490 | 0.804510 | 2.087164e-49 | -8.615850e-47 |
| Msa0211150 | Msa0361490 | 0.800486 | 1.409348e-48 | -8.615850e-47 |
| Msa0223330 | Msa0361490 | 0.826888 | 2.118921e-54 | -8.615850e-47 |
| Msa0223340 | Msa0361490 | 0.808132 | 3.599329e-50 | -8.615850e-47 |
| Msa0233370 | Msa0361490 | 0.803974 | 2.697749e-49 | -8.615850e-47 |
| Msa0241140 | Msa0361490 | 0.804414 | 2.185299e-49 | -8.615850e-47 |
| Msa0249580 | Msa0361490 | 0.813814 | 2.115449e-51 | -8.615850e-47 |
| Msa0257490 | Msa0361490 | 0.848696 | 5.197917e-60 | -8.615850e-47 |
| Msa0272300 | Msa0361490 | 0.823545 | 1.307516e-53 | -8.615850e-47 |
| Msa0278580 | Msa0361490 | 0.823958 | 1.046555e-53 | -8.615850e-47 |
| Msa0281530 | Msa0361490 | 0.833954 | 3.962185e-56 | -8.615850e-47 |
| Msa0285330 | Msa0361490 | 0.817725 | 2.841064e-52 | -8.615850e-47 |
| Msa0287410 | Msa0361490 | 0.801031 | 1.090614e-48 | -8.615850e-47 |
| Msa0288080 | Msa0361490 | 0.813176 | 2.922307e-51 | -8.615850e-47 |
| Msa0296790 | Msa0361490 | 0.818995 | 1.465330e-52 | -8.615850e-47 |
| Msa0305410 | Msa0361490 | 0.828964 | 6.706013e-55 | -8.615850e-47 |
| Msa0317940 | Msa0361490 | 0.813861 | 2.065630e-51 | -8.615850e-47 |
| Msa0317960 | Msa0361490 | 0.833679 | 4.643836e-56 | -8.615850e-47 |
| Msa0320590 | Msa0361490 | 0.812483 | 4.144111e-51 | -8.615850e-47 |
| Msa0321690 | Msa0361490 | 0.804000 | 2.665414e-49 | -8.615850e-47 |
| Msa0326480 | Msa0361490 | 0.851790 | 7.056445e-61 | -8.615850e-47 |
| Msa0343850 | Msa0361490 | 0.828191 | 1.031091e-54 | -8.615850e-47 |
| Msa0359030 | Msa0361490 | 0.805642 | 1.209866e-49 | -8.615850e-47 |
| Msa0361490 | Msa0385500 | 0.838699 | 2.462636e-57 | -8.615850e-47 |
| Msa0361490 | Msa0398670 | 0.806146 | 9.479327e-50 | -8.615850e-47 |
| Msa0361490 | Msa0403770 | 0.800454 | 1.430323e-48 | -8.615850e-47 |
| Msa0361490 | Msa0432500 | 0.802144 | 6.448013e-49 | -8.615850e-47 |
| Msa0361490 | Msa0450400 | -0.814260 | 1.686415e-51 | -8.615850e-47 |
| Msa0361490 | Msa0452710 | 0.820501 | 6.634686e-53 | -8.615850e-47 |
| Msa0361490 | Msa0457960 | 0.832773 | 7.806351e-56 | -8.615850e-47 |
| Msa0361490 | Msa0469620 | -0.805521 | 1.282467e-49 | -8.615850e-47 |
| Msa0361490 | Msa0491000 | 0.805221 | 1.482057e-49 | -8.615850e-47 |
| Msa0361490 | Msa0527540 | 0.808438 | 3.097287e-50 | -8.615850e-47 |
| Msa0361490 | Msa0530560 | 0.812366 | 4.395630e-51 | -8.615850e-47 |
| Msa0361490 | Msa0542290 | 0.833741 | 4.479541e-56 | -8.615850e-47 |
| Msa0361490 | Msa0542560 | 0.825313 | 5.017044e-54 | -8.615850e-47 |
| Msa0361490 | Msa0588260 | 0.807318 | 5.359065e-50 | -8.615850e-47 |
| Msa0361490 | Msa0604290 | 0.836342 | 9.896697e-57 | -8.615850e-47 |
| Msa0361490 | Msa0629240 | 0.807089 | 5.993118e-50 | -8.615850e-47 |
| Msa0361490 | Msa0645530 | 0.802201 | 6.277193e-49 | -8.615850e-47 |
| Msa0361490 | Msa0672550 | 0.804301 | 2.307420e-49 | -8.615850e-47 |
| Msa0361490 | Msa0677530 | 0.818951 | 1.499335e-52 | -8.615850e-47 |
| Msa0361490 | Msa0685090 | 0.818605 | 1.796061e-52 | -8.615850e-47 |
| Msa0361490 | Msa0705190 | 0.800847 | 1.189534e-48 | -8.615850e-47 |
| Msa0361490 | Msa0750850 | 0.813508 | 2.469918e-51 | -8.615850e-47 |
| Msa0361490 | Msa0765180 | 0.826345 | 2.855033e-54 | -8.615850e-47 |
| Msa0361490 | Msa0800370 | 0.824870 | 6.385325e-54 | -8.615850e-47 |
| Msa0361490 | Msa0820850 | 0.808211 | 3.462160e-50 | -8.615850e-47 |
| Msa0361490 | Msa0822500 | 0.813215 | 2.865210e-51 | -8.615850e-47 |
| Msa0361490 | Msa0832340 | 0.822965 | 1.786258e-53 | -8.615850e-47 |
| Msa0361490 | Msa0844110 | 0.802665 | 5.038106e-49 | -8.615850e-47 |
| Msa0361490 | Msa0847150 | 0.816590 | 5.112249e-52 | -8.615850e-47 |
| Msa0361490 | Msa0849030 | 0.814808 | 1.275885e-51 | -8.615850e-47 |
| Msa0361490 | Msa0861470 | 0.805847 | 1.095368e-49 | -8.615850e-47 |
| Msa0361490 | Msa0861540 | 0.814872 | 1.234529e-51 | -8.615850e-47 |
| Msa0361490 | Msa0861570 | 0.803546 | 3.310623e-49 | -8.615850e-47 |
| Msa0361490 | Msa0923780 | 0.801138 | 1.036928e-48 | -8.615850e-47 |
| Msa0361490 | Msa0933380 | 0.802016 | 6.853613e-49 | -8.615850e-47 |
| Msa0361490 | Msa0962840 | 0.817050 | 4.031881e-52 | -8.615850e-47 |
| Msa0361490 | Msa0969370 | 0.808717 | 2.699458e-50 | -8.615850e-47 |
| Msa0361490 | Msa0969730 | 0.806554 | 7.776266e-50 | -8.615850e-47 |
| Msa0361490 | Msa0969810 | 0.802021 | 6.835253e-49 | -8.615850e-47 |
| Msa0361490 | Msa0980880 | 0.806945 | 6.427130e-50 | -8.615850e-47 |
| Msa0361490 | Msa1002850 | 0.815727 | 7.972378e-52 | -8.615850e-47 |
| Msa0361490 | Msa1036300 | 0.815321 | 9.816432e-52 | -8.615850e-47 |
| Msa0361490 | Msa1036610 | 0.812786 | 3.557472e-51 | -8.615850e-47 |
| Msa0361490 | Msa1037520 | 0.812081 | 5.071451e-51 | -8.615850e-47 |
| Msa0361490 | Msa1046280 | 0.828082 | 1.095691e-54 | -8.615850e-47 |
| Msa0361490 | Msa1063510 | 0.805551 | 1.264137e-49 | -8.615850e-47 |
| Msa0361490 | Msa1071320 | 0.809758 | 1.615341e-50 | -8.615850e-47 |
| Msa0361490 | Msa1072900 | 0.833753 | 4.449746e-56 | -8.615850e-47 |
| Msa0361490 | Msa1081790 | -0.813651 | 2.298122e-51 | -8.615850e-47 |
| Msa0361490 | Msa1089460 | 0.827778 | 1.296257e-54 | -8.615850e-47 |
| Msa0361490 | Msa1109680 | 0.818482 | 1.915241e-52 | -8.615850e-47 |
| Msa0361490 | Msa1137570 | 0.806426 | 8.272588e-50 | -8.615850e-47 |
| Msa0361490 | Msa1158640 | -0.808046 | 3.753678e-50 | -8.615850e-47 |
| Msa0361490 | Msa1163730 | 0.805350 | 1.393004e-49 | -8.615850e-47 |
| Msa0361490 | Msa1166090 | -0.804707 | 1.898018e-49 | -8.615850e-47 |
| Msa0361490 | Msa1174040 | 0.800850 | 1.187884e-48 | -8.615850e-47 |
| Msa0361490 | Msa1178580 | 0.812599 | 3.909301e-51 | -8.615850e-47 |
| Msa0361490 | Msa1207310 | 0.800360 | 1.495110e-48 | -8.615850e-47 |
| Msa0361490 | Msa1212950 | 0.812314 | 4.511251e-51 | -8.615850e-47 |
| Msa0361490 | Msa1213980 | 0.809217 | 2.109897e-50 | -8.615850e-47 |
| Msa0361490 | Msa1233850 | 0.803744 | 3.012190e-49 | -8.615850e-47 |
| Msa0361490 | Msa1250530 | 0.805967 | 1.033730e-49 | -8.615850e-47 |
| Msa0361490 | Msa1254730 | 0.821701 | 3.510668e-53 | -8.615850e-47 |
| Msa0361490 | Msa1271130 | 0.854188 | 1.453948e-61 | -8.615850e-47 |
| Msa0361490 | Msa1276150 | 0.813173 | 2.926029e-51 | -8.615850e-47 |
| Msa0361490 | Msa1280320 | 0.801762 | 7.724882e-49 | -8.615850e-47 |
| Msa0361490 | Msa1294820 | 0.813200 | 2.887523e-51 | -8.615850e-47 |
| Msa0361490 | Msa1305810 | 0.800212 | 1.602011e-48 | -8.615850e-47 |
| Msa0361490 | Msa1331320 | 0.815651 | 8.289299e-52 | -8.615850e-47 |
| Msa0361490 | Msa1336560 | 0.823263 | 1.521904e-53 | -8.615850e-47 |
| Msa0361490 | Msa1370070 | -0.822165 | 2.741390e-53 | -8.615850e-47 |
| Msa0361490 | Msa1372240 | 0.802432 | 5.627398e-49 | -8.615850e-47 |
| Msa0361490 | Msa1396400 | -0.804590 | 2.007911e-49 | -8.615850e-47 |
| Msa0361490 | Msa1401990 | 0.824114 | 9.616788e-54 | -8.615850e-47 |
| Msa0361490 | Msa1419640 | 0.802613 | 5.163208e-49 | -8.615850e-47 |
| Msa0361490 | Msa1419690 | 0.820400 | 6.997432e-53 | -8.615850e-47 |
| Msa0361490 | Msa1453880 | 0.802374 | 5.784194e-49 | -8.615850e-47 |
| Msa0361490 | Msa1454680 | 0.802525 | 5.383927e-49 | -8.615850e-47 |
| Msa0361490 | Msa1460320 | -0.805682 | 1.186359e-49 | -8.615850e-47 |
| Msa0361490 | Msa1462290 | 0.809724 | 1.642766e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361490 | MtrunA17_Chr3g0099881 | 92.621 | 515 | 9 | 4 | 1 | 508 | 1 | 493 | 0.0 | 955 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361490 | AT2G24830.1 | 52.581 | 523 | 207 | 8 | 1 | 508 | 1 | 497 | 4.79e-165 | 477 |
Find 146 sgRNAs with CRISPR-Local
Find 426 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACAGGGTTTAGGATTTA+TGG | 0.135876 | 3_1:+52051442 | Msa0361490:CDS |
| GCTGGTATGCAAAATCATTT+TGG | 0.173565 | 3_1:+52047993 | Msa0361490:CDS |
| AAATTGACTTTGCGCTTATT+TGG | 0.220999 | 3_1:+52052410 | Msa0361490:three_prime_UTR |
| TTCCAAAATGATGGCGAATA+TGG | 0.222774 | 3_1:+52051544 | Msa0361490:CDS |
| CAGCCAATGCCTTGCGGGTT+TGG | 0.224209 | 3_1:-52052039 | None:intergenic |
| ACCCATATTCGCCATCATTT+TGG | 0.227507 | 3_1:-52051546 | None:intergenic |
| AGGAATATGCCCCAACAATT+TGG | 0.235755 | 3_1:+52051174 | Msa0361490:CDS |
| TTGTTTGCCAAATGTGATTT+TGG | 0.240774 | 3_1:+52052384 | Msa0361490:three_prime_UTR |
| TGCTTGGTTTACTATATGTT+TGG | 0.268175 | 3_1:+52052357 | Msa0361490:three_prime_UTR |
| ATAATAATCTCGCACGCTTT+AGG | 0.280179 | 3_1:-52047741 | None:intergenic |
| GGAACTTGTTCAGGCAATTA+AGG | 0.282463 | 3_1:+52047696 | Msa0361490:CDS |
| AGCCTAAACCCATTCCTTCT+TGG | 0.291741 | 3_1:-52051571 | None:intergenic |
| GAAGAGGAACCACAGGGTTT+AGG | 0.304634 | 3_1:+52051434 | Msa0361490:CDS |
| AAGCTGTAAGTTTGCTTGCT+TGG | 0.305901 | 3_1:+52052341 | Msa0361490:three_prime_UTR |
| ATTTGGAAGCCGTCCCTTGC+TGG | 0.320960 | 3_1:+52051191 | Msa0361490:CDS |
| CCCTTGCTGGGTCAAGCATA+TGG | 0.330283 | 3_1:+52051204 | Msa0361490:CDS |
| AGCCTCAGCCAATGCCTTGC+GGG | 0.336670 | 3_1:-52052044 | None:intergenic |
| GGAATGGGTTTAGGCTTAAC+TGG | 0.336817 | 3_1:+52051578 | Msa0361490:CDS |
| CTTCGCAAATATAGCAGTTT+CGG | 0.344490 | 3_1:-52051495 | None:intergenic |
| ATTTCATCCAAAATCACATT+TGG | 0.349389 | 3_1:-52052391 | None:intergenic |
| TTCCTCTGAGCCGCTGTAAT+CGG | 0.364138 | 3_1:-52051414 | None:intergenic |
| TTGTTGGGGCATATTCCTTA+AGG | 0.375669 | 3_1:-52051169 | None:intergenic |
| GCTTGGTTTACTATATGTTT+GGG | 0.376612 | 3_1:+52052358 | Msa0361490:three_prime_UTR |
| AGACTTAAGTGCATGATCTA+AGG | 0.378035 | 3_1:-52051651 | None:intergenic |
| TGTTCAACTGACTTCCCTTA+AGG | 0.378203 | 3_1:+52051154 | Msa0361490:CDS |
| GGGACGGCTTCCAAATTGTT+GGG | 0.381328 | 3_1:-52051184 | None:intergenic |
| GGTTCACGAGGAACTTGTTC+AGG | 0.382347 | 3_1:+52047687 | Msa0361490:intron |
| AGGTTCAGGTGAAGGTAAAA+AGG | 0.390687 | 3_1:+52051883 | Msa0361490:CDS |
| GGTTCTAAAATTTGAACAAA+TGG | 0.394751 | 3_1:+52051961 | Msa0361490:CDS |
| TTCATAGCAGCATCATAAAC+AGG | 0.396986 | 3_1:-52052007 | None:intergenic |
| TACCTCGAGGAGTTCGGAAT+TGG | 0.397854 | 3_1:-52046191 | None:intergenic |
| GGGTTTAGGCTTAACTGGTC+AGG | 0.398564 | 3_1:+52051583 | Msa0361490:CDS |
| TACCAAGAAGGAATGGGTTT+AGG | 0.400375 | 3_1:+52051569 | Msa0361490:CDS |
| TTACAACAACGATGTCGATT+TGG | 0.412824 | 3_1:+52050042 | Msa0361490:CDS |
| CTTCTTCATTGATCCATTGT+TGG | 0.414052 | 3_1:-52051849 | None:intergenic |
| ATAATTTAATAAAGTGAAGA+AGG | 0.415640 | 3_1:+52046013 | None:intergenic |
| AGGCTTAACTGGTCAGGGTA+TGG | 0.427130 | 3_1:+52051589 | Msa0361490:CDS |
| TCACCTGAACCTTTGCTTTG+CGG | 0.427692 | 3_1:-52051872 | None:intergenic |
| CAAATGCAAATGCAGGCATT+TGG | 0.433219 | 3_1:+52051234 | Msa0361490:CDS |
| GAAGCTTGGTGCACAAGATA+TGG | 0.438563 | 3_1:+52051334 | Msa0361490:CDS |
| TGGAAGCCATGCCTCTGGTA+TGG | 0.440011 | 3_1:-52051526 | None:intergenic |
| TGTTGGGGCATATTCCTTAA+GGG | 0.440974 | 3_1:-52051168 | None:intergenic |
| TGGTAGAACCTTCACTGGTA+TGG | 0.441015 | 3_1:-52051618 | None:intergenic |
| CCAGAGGTGGTAAGAGAAAA+CGG | 0.441799 | 3_1:+52051717 | Msa0361490:CDS |
| TCCAAAATGATGGCGAATAT+GGG | 0.445234 | 3_1:+52051545 | Msa0361490:CDS |
| TGAAGATACCTCGAGGAGTT+CGG | 0.446790 | 3_1:-52046197 | None:intergenic |
| TTTATTAGCGAGAAGACATC+TGG | 0.451439 | 3_1:-52051797 | None:intergenic |
| AGGGACGGCTTCCAAATTGT+TGG | 0.452556 | 3_1:-52051185 | None:intergenic |
| TCCTATGTAATGTCTACAAC+TGG | 0.452660 | 3_1:-52052491 | None:intergenic |
| TGTAGATTCCGTTACAAAGA+TGG | 0.463502 | 3_1:+52047889 | Msa0361490:CDS |
| TTCGTCCCATGACTCAAGCT+CGG | 0.469021 | 3_1:-52051264 | None:intergenic |
| CAGAAAAGCAAAGGAAGAAA+CGG | 0.469810 | 3_1:+52051693 | Msa0361490:CDS |
| ATTACATAGGACATTTCATT+CGG | 0.472745 | 3_1:+52052503 | Msa0361490:three_prime_UTR |
| AGCAGCCGAGCTTGAGTCAT+GGG | 0.474748 | 3_1:+52051259 | Msa0361490:CDS |
| CAATGGTCAAGTGATGCAAT+TGG | 0.476631 | 3_1:+52047921 | Msa0361490:CDS |
| GTTCGGAATTGGTTGGATCA+AGG | 0.480602 | 3_1:-52046180 | None:intergenic |
| TGCACTTAAGTCTCATAAAG+TGG | 0.483692 | 3_1:+52051661 | Msa0361490:CDS |
| GGCTCTGGTTCAACATCTGC+AGG | 0.485074 | 3_1:-52047832 | None:intergenic |
| GAGAGTCCTTGAAAACCAAC+TGG | 0.486111 | 3_1:+52046102 | Msa0361490:CDS |
| AACCCGCAAGGCATTGGCTG+AGG | 0.488844 | 3_1:+52052042 | Msa0361490:CDS |
| CAGCCTCAGCCAATGCCTTG+CGG | 0.490138 | 3_1:-52052045 | None:intergenic |
| GCATGATCTAAGGACTGCTT+AGG | 0.491473 | 3_1:-52051641 | None:intergenic |
| AGTCCAAACCCGCAAGGCAT+TGG | 0.491568 | 3_1:+52052036 | Msa0361490:CDS |
| GCGAATATGGGTTACCAAGA+AGG | 0.492625 | 3_1:+52051557 | Msa0361490:CDS |
| AAGCCGCAAAGCAAAGGTTC+AGG | 0.493600 | 3_1:+52051869 | Msa0361490:CDS |
| GCACAGCACTGTGTCTGCTT+CGG | 0.493677 | 3_1:-52047764 | None:intergenic |
| CTGACCACTCAGGTGAAAGA+AGG | 0.494272 | 3_1:-52052302 | None:intergenic |
| ATGGGTTACCAAGAAGGAAT+GGG | 0.495197 | 3_1:+52051563 | Msa0361490:CDS |
| AAAATGCAAGATTTACAACT+TGG | 0.501295 | 3_1:-52052441 | None:intergenic |
| TTTGGAAGCCGTCCCTTGCT+GGG | 0.503809 | 3_1:+52051192 | Msa0361490:CDS |
| AACTGCTATATTTGCGAAGT+GGG | 0.506208 | 3_1:+52051499 | Msa0361490:CDS |
| CCTTGCTGGGTCAAGCATAT+GGG | 0.512367 | 3_1:+52051205 | Msa0361490:CDS |
| GTAATCGGATTGTTCTAAGC+TGG | 0.518452 | 3_1:-52051399 | None:intergenic |
| CAGAGGTGGTAAGAGAAAAC+GGG | 0.519218 | 3_1:+52051718 | Msa0361490:CDS |
| TATGGGTTACCAAGAAGGAA+TGG | 0.519292 | 3_1:+52051562 | Msa0361490:CDS |
| TTGTGAGGTGGAACGAGAAT+GGG | 0.520193 | 3_1:+52046067 | Msa0361490:exon |
| CTTAAGTCTCATAAAGTGGA+AGG | 0.523148 | 3_1:+52051665 | Msa0361490:CDS |
| TCCTACATCTGAAAATATGC+TGG | 0.524946 | 3_1:+52047975 | Msa0361490:CDS |
| ATTGTGAGGTGGAACGAGAA+TGG | 0.526391 | 3_1:+52046066 | Msa0361490:exon |
| CTCAGAGGAAGAGGAACCAC+AGG | 0.529152 | 3_1:+52051427 | Msa0361490:CDS |
| TTGAACGCCTTTCTGTAAGT+TGG | 0.529456 | 3_1:-52051471 | None:intergenic |
| CCCATATGCTTGACCCAGCA+AGG | 0.531582 | 3_1:-52051205 | None:intergenic |
| GGTAGAACCTTCACTGGTAT+GGG | 0.533043 | 3_1:-52051617 | None:intergenic |
| TTACAGCGGCTCAGAGGAAG+AGG | 0.535906 | 3_1:+52051418 | Msa0361490:CDS |
| AGGCATGGCTTCCAAAATGA+TGG | 0.538766 | 3_1:+52051535 | Msa0361490:CDS |
| CATGTAATTGAAGTTCCAGT+TGG | 0.543818 | 3_1:-52046117 | None:intergenic |
| GCAATTAAGGATGCCGAGGA+AGG | 0.547779 | 3_1:+52047709 | Msa0361490:CDS |
| TAATTTAATAAAGTGAAGAA+GGG | 0.549996 | 3_1:+52046014 | None:intergenic |
| TCCGTTACAAAGATGGGCGT+TGG | 0.550166 | 3_1:+52047896 | Msa0361490:CDS |
| CACGGTGAAGCTTCCAACAA+TGG | 0.551415 | 3_1:+52051836 | Msa0361490:CDS |
| GTAGATTCCGTTACAAAGAT+GGG | 0.552313 | 3_1:+52047890 | Msa0361490:CDS |
| GTTGGAAGCTTCACCGTGCA+TGG | 0.554167 | 3_1:-52051831 | None:intergenic |
| AAAGATGGGCGTTGGTACAA+TGG | 0.554183 | 3_1:+52047904 | Msa0361490:CDS |
| GGTTTAGGCTTAACTGGTCA+GGG | 0.554398 | 3_1:+52051584 | Msa0361490:CDS |
| TGACCACTCAGGTGAAAGAA+GGG | 0.557501 | 3_1:-52052301 | None:intergenic |
| AACAACATCATCTGAGGCAG+AGG | 0.558032 | 3_1:-52052080 | None:intergenic |
| TCGAGGAGTTCGGAATTGGT+TGG | 0.566915 | 3_1:-52046187 | None:intergenic |
| CAAAGCAAAGGTTCAGGTGA+AGG | 0.567290 | 3_1:+52051875 | Msa0361490:CDS |
| TTAGCAGCTTACCATGGGAT+AGG | 0.568857 | 3_1:-52050077 | None:intergenic |
| ACCACTCAGGTGAAAGAAGG+GGG | 0.570777 | 3_1:-52052299 | None:intergenic |
| ATGAAGAAGCCGCAAAGCAA+AGG | 0.572676 | 3_1:+52051863 | Msa0361490:CDS |
| GAGCAGCCGAGCTTGAGTCA+TGG | 0.572843 | 3_1:+52051258 | Msa0361490:CDS |
| AATTGGTTTGTATTGTGAGG+TGG | 0.573179 | 3_1:+52046055 | Msa0361490:five_prime_UTR |
| GCAGTCTCAAATGCAAATGC+AGG | 0.576110 | 3_1:+52051227 | Msa0361490:CDS |
| TTAGGTGGTAGAACCTTCAC+TGG | 0.576337 | 3_1:-52051623 | None:intergenic |
| TCGCAGAACTTCCATCATCT+CGG | 0.576538 | 3_1:-52051313 | None:intergenic |
| GATAGTACCAACTTACAGAA+AGG | 0.577624 | 3_1:+52051464 | Msa0361490:CDS |
| CATTCAATATATCCTCATGC+AGG | 0.585664 | 3_1:+52052186 | Msa0361490:three_prime_UTR |
| TGTGAAGGATTTGAAAGTGC+AGG | 0.591216 | 3_1:+52051940 | Msa0361490:CDS |
| TCAACATCTGCAGGATCAAG+TGG | 0.594691 | 3_1:-52047823 | None:intergenic |
| GATGGAAGTTCTGCGAAGCT+TGG | 0.595918 | 3_1:+52051320 | Msa0361490:CDS |
| TAGGTGAAGAAGTCCTTCCT+CGG | 0.599243 | 3_1:-52047722 | None:intergenic |
| TCAAAGCATCTGCCTGCATG+AGG | 0.601051 | 3_1:-52052198 | None:intergenic |
| ACCAACGCCCATCTTTGTAA+CGG | 0.601052 | 3_1:-52047897 | None:intergenic |
| GGACGGCTTCCAAATTGTTG+GGG | 0.603564 | 3_1:-52051183 | None:intergenic |
| AGGAAGAAACGGACCAGAGG+TGG | 0.605286 | 3_1:+52051704 | Msa0361490:CDS |
| TGCTTATGAGAATGATGTGA+AGG | 0.609787 | 3_1:+52051925 | Msa0361490:CDS |
| CACTCAGGTGAAAGAAGGGG+GGG | 0.611567 | 3_1:-52052297 | None:intergenic |
| TGATCTAAGGACTGCTTAGG+TGG | 0.612721 | 3_1:-52051638 | None:intergenic |
| AGTAACTGTCGCCTATCCCA+TGG | 0.613342 | 3_1:+52050066 | Msa0361490:CDS |
| CAAAGGAAGAAACGGACCAG+AGG | 0.617674 | 3_1:+52051701 | Msa0361490:CDS |
| GATGCAATTGGATAATTCAG+TGG | 0.621983 | 3_1:+52047933 | Msa0361490:CDS |
| AACACTCAACTAGCCATGCA+CGG | 0.622219 | 3_1:+52051818 | Msa0361490:CDS |
| GGTTGATCCCATACCAGTGA+AGG | 0.622390 | 3_1:+52051610 | Msa0361490:CDS |
| GTCGATATCCCAGGTTCACG+AGG | 0.623116 | 3_1:+52047675 | Msa0361490:intron |
| GACCACTCAGGTGAAAGAAG+GGG | 0.623259 | 3_1:-52052300 | None:intergenic |
| TTTGCTAACAACATCATCTG+AGG | 0.624235 | 3_1:-52052086 | None:intergenic |
| ATGCTTGACCCAGCAAGGGA+CGG | 0.625116 | 3_1:-52051200 | None:intergenic |
| AAACTGCTATATTTGCGAAG+TGG | 0.626176 | 3_1:+52051498 | Msa0361490:CDS |
| CAGTGTAATGCTGACCACTC+AGG | 0.627828 | 3_1:-52052312 | None:intergenic |
| CAAGATTTACAACTTGGACG+CGG | 0.629736 | 3_1:-52052435 | None:intergenic |
| GGAGAACCATACCAGAGGCA+TGG | 0.631835 | 3_1:+52051520 | Msa0361490:CDS |
| TTAAGTCTCATAAAGTGGAA+GGG | 0.632685 | 3_1:+52051666 | Msa0361490:CDS |
| AAAATTAGTCCAAACCCGCA+AGG | 0.632774 | 3_1:+52052030 | Msa0361490:CDS |
| CCATATGCTTGACCCAGCAA+GGG | 0.636597 | 3_1:-52051204 | None:intergenic |
| ATCCGATTACAGCGGCTCAG+AGG | 0.638535 | 3_1:+52051412 | Msa0361490:CDS |
| AAGGGAACACAGAAAAGCAA+AGG | 0.640836 | 3_1:+52051684 | Msa0361490:CDS |
| GAAAATTGGTTTGTATTGTG+AGG | 0.644787 | 3_1:+52046052 | Msa0361490:five_prime_UTR |
| ACCAGTTGTAGACATTACAT+AGG | 0.645349 | 3_1:+52052490 | Msa0361490:three_prime_UTR |
| TCAGGCAATTAAGGATGCCG+AGG | 0.649742 | 3_1:+52047705 | Msa0361490:CDS |
| AACCAATTCCGAACTCCTCG+AGG | 0.659085 | 3_1:+52046189 | Msa0361490:CDS |
| CCACTCAGGTGAAAGAAGGG+GGG | 0.679833 | 3_1:-52052298 | None:intergenic |
| TCCATAAATCCTAAACCCTG+TGG | 0.699072 | 3_1:-52051443 | None:intergenic |
| AAGTGGGAGAACCATACCAG+AGG | 0.724288 | 3_1:+52051515 | Msa0361490:CDS |
| TTAGAACAATCCGATTACAG+CGG | 0.729255 | 3_1:+52051404 | Msa0361490:CDS |
| TCAGAGGAAGAGGAACCACA+GGG | 0.729850 | 3_1:+52051428 | Msa0361490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATCAACTTTTATAATTTT+TGG | - | chr3_1:52049351-52049370 | None:intergenic | 10.0% |
| !! | AAAACTTAAATCATTTATAA+AGG | - | chr3_1:52049539-52049558 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTTTTTGTTTTAA+AGG | + | chr3_1:52049615-52049634 | Msa0361490:intron | 10.0% |
| !!! | TTTGAACTTTATTTTTAAAA+TGG | + | chr3_1:52050493-52050512 | Msa0361490:intron | 10.0% |
| !! | TTTCTTATGATAAAAGATAT+AGG | + | chr3_1:52046629-52046648 | Msa0361490:intron | 15.0% |
| !!! | AAACATTTTGACTTTATTTT+GGG | - | chr3_1:52046932-52046951 | None:intergenic | 15.0% |
| !!! | AAAACATTTTGACTTTATTT+TGG | - | chr3_1:52046933-52046952 | None:intergenic | 15.0% |
| !!! | ACAAGATTAAATTTTTAAGA+GGG | - | chr3_1:52048734-52048753 | None:intergenic | 15.0% |
| !!! | AACAAGATTAAATTTTTAAG+AGG | - | chr3_1:52048735-52048754 | None:intergenic | 15.0% |
| !! | TCTTAAAAATTTAATCTTGT+TGG | + | chr3_1:52048734-52048753 | Msa0361490:intron | 15.0% |
| !! | TGGAAAAATTTATTAGAAAA+TGG | + | chr3_1:52048885-52048904 | Msa0361490:intron | 15.0% |
| !! | TGGTATTATAAAGTAATTAA+TGG | - | chr3_1:52049817-52049836 | None:intergenic | 15.0% |
| !! | TTAATTACTTTATAATACCA+TGG | + | chr3_1:52049817-52049836 | Msa0361490:intron | 15.0% |
| !! | AATGAAATTAAAATGTAGAT+AGG | - | chr3_1:52050451-52050470 | None:intergenic | 15.0% |
| !!! | TCTACATTTTAATTTCATTT+AGG | + | chr3_1:52050452-52050471 | Msa0361490:intron | 15.0% |
| !! | TTTATAATATCTATGTTTAC+AGG | + | chr3_1:52051125-52051144 | Msa0361490:intron | 15.0% |
| !! | ATGAAAATAAAGGTGAAAAT+AGG | + | chr3_1:52046997-52047016 | Msa0361490:intron | 20.0% |
| !!! | GTTGTTGAATTATTTTAGAA+TGG | + | chr3_1:52047440-52047459 | Msa0361490:intron | 20.0% |
| !!! | TTGAATTATTTTAGAATGGA+TGG | + | chr3_1:52047444-52047463 | Msa0361490:intron | 20.0% |
| !!! | TTTTTTATTTGTTATAGCAG+TGG | - | chr3_1:52048120-52048139 | None:intergenic | 20.0% |
| !! | AATGTAACATATATAGAGAA+GGG | + | chr3_1:52048187-52048206 | Msa0361490:intron | 20.0% |
| !! | TCTACTTCTAAATAAATCTA+GGG | - | chr3_1:52048251-52048270 | None:intergenic | 20.0% |
| !!! | TGTTTTTATATAGTCTCATA+AGG | - | chr3_1:52048397-52048416 | None:intergenic | 20.0% |
| !!! | CAACTTTTAAAAGAATAACA+TGG | - | chr3_1:52048510-52048529 | None:intergenic | 20.0% |
| !! | TATCATATAAAATCACTTAC+AGG | + | chr3_1:52048600-52048619 | Msa0361490:intron | 20.0% |
| !! | TAAAGTTCTTATTGCAAAAT+AGG | + | chr3_1:52048790-52048809 | Msa0361490:intron | 20.0% |
| !! | AAAGTTCTTATTGCAAAATA+GGG | + | chr3_1:52048791-52048810 | Msa0361490:intron | 20.0% |
| !!! | TTATGTCAAGTTAATCTTTT+AGG | + | chr3_1:52048827-52048846 | Msa0361490:intron | 20.0% |
| !!! | TCGAATTTCAACTTTTTTTT+TGG | + | chr3_1:52049159-52049178 | Msa0361490:intron | 20.0% |
| !!! | TCAACTTTTTTTTTGGTTTT+TGG | + | chr3_1:52049166-52049185 | Msa0361490:intron | 20.0% |
| !!! | ACTTTTATAATTTTTGGTGA+TGG | - | chr3_1:52049345-52049364 | None:intergenic | 20.0% |
| !!! | ATTTTTATTCCTCAAAATCT+AGG | + | chr3_1:52049936-52049955 | Msa0361490:intron | 20.0% |
| !! | ACAAGTAATCAAAGAAATAA+CGG | - | chr3_1:52050206-52050225 | None:intergenic | 20.0% |
| !! | CCAAAATTTATATCTCATAA+TGG | - | chr3_1:52050362-52050381 | None:intergenic | 20.0% |
| !!! | CCATTATGAGATATAAATTT+TGG | + | chr3_1:52050359-52050378 | Msa0361490:intron | 20.0% |
| !!! | ATAAATTTTGGTTAACATCT+TGG | + | chr3_1:52050371-52050390 | Msa0361490:intron | 20.0% |
| !! | TAACATCTTGGAAAAAATTT+AGG | + | chr3_1:52050383-52050402 | Msa0361490:intron | 20.0% |
| !! | AGAGAAAAAAATAATAGACA+TGG | + | chr3_1:52050832-52050851 | Msa0361490:intron | 20.0% |
| !!! | TTAAGTTTTAGTTAGTACTT+AGG | + | chr3_1:52052128-52052147 | Msa0361490:exon | 20.0% |
| ! | GAAAGAAAAAGAAGGAAAAT+TGG | + | chr3_1:52046038-52046057 | Msa0361490:five_prime_UTR | 25.0% |
| !! | ATTGATTCTACATGAATCTA+TGG | - | chr3_1:52046358-52046377 | None:intergenic | 25.0% |
| !! | AAAATTGATTCTGACATGTT+TGG | - | chr3_1:52046396-52046415 | None:intergenic | 25.0% |
| !! | CATTTTCATTCCATTGTTTT+AGG | - | chr3_1:52046495-52046514 | None:intergenic | 25.0% |
| !! | ACTGTTTTCATGAATTATAC+TGG | + | chr3_1:52046967-52046986 | Msa0361490:intron | 25.0% |
| ! | TGGACAACTTATGAAAATAA+AGG | + | chr3_1:52046987-52047006 | Msa0361490:intron | 25.0% |
| ! | ATAAAGGTGAAAATAGGTTA+TGG | + | chr3_1:52047003-52047022 | Msa0361490:intron | 25.0% |
| !!! | GATTTTGTTTATATGCAGAA+TGG | - | chr3_1:52047246-52047265 | None:intergenic | 25.0% |
| !! | TTAAATATACCGGATTTTAC+TGG | + | chr3_1:52047377-52047396 | Msa0361490:intron | 25.0% |
| !! | TAAATATACCGGATTTTACT+GGG | + | chr3_1:52047378-52047397 | Msa0361490:intron | 25.0% |
| ! | ATGTGAGAATACAATATTCT+AGG | - | chr3_1:52047522-52047541 | None:intergenic | 25.0% |
| ! | TAGAATATTGTATTCTCACA+TGG | + | chr3_1:52047521-52047540 | Msa0361490:intron | 25.0% |
| ! | AGAATATTGTATTCTCACAT+GGG | + | chr3_1:52047522-52047541 | Msa0361490:intron | 25.0% |
| !!! | GATTTTAACTACCATGATTA+TGG | + | chr3_1:52047602-52047621 | Msa0361490:intron | 25.0% |
| !! | GAAGAAAAAAGCTTTTCTAT+TGG | + | chr3_1:52047859-52047878 | Msa0361490:CDS | 25.0% |
| !!! | ATCTCTTTTTTCGTCTATTT+TGG | + | chr3_1:52048025-52048044 | Msa0361490:CDS | 25.0% |
| ! | GAATGTAACATATATAGAGA+AGG | + | chr3_1:52048186-52048205 | Msa0361490:intron | 25.0% |
| ! | ATATATAGAGAAGGGAAAAT+AGG | + | chr3_1:52048195-52048214 | Msa0361490:intron | 25.0% |
| ! | CTCTACTTCTAAATAAATCT+AGG | - | chr3_1:52048252-52048271 | None:intergenic | 25.0% |
| ! | AGAGAAAAAAGCAAATGATT+AGG | + | chr3_1:52048268-52048287 | Msa0361490:intron | 25.0% |
| ! | TAAATGTTGTCTTGGTTTAA+GGG | + | chr3_1:52048362-52048381 | Msa0361490:intron | 25.0% |
| ! | ACATTTACCTAACTAGATTT+AGG | - | chr3_1:52048626-52048645 | None:intergenic | 25.0% |
| !!! | ATATTGGTCTTTTTTAAGGT+TGG | - | chr3_1:52048853-52048872 | None:intergenic | 25.0% |
| !!! | CAAGATATTGGTCTTTTTTA+AGG | - | chr3_1:52048857-52048876 | None:intergenic | 25.0% |
| ! | ATTTGATGTTTCAACAGTTT+AGG | + | chr3_1:52048984-52049003 | Msa0361490:intron | 25.0% |
| ! | ATATGTCAAATGAGTTACTT+AGG | - | chr3_1:52049037-52049056 | None:intergenic | 25.0% |
| ! | AATAGCAGCAAAAAAAAAAG+AGG | - | chr3_1:52049138-52049157 | None:intergenic | 25.0% |
| ! | AAACAACACTTAAAAAGGAA+TGG | - | chr3_1:52049267-52049286 | None:intergenic | 25.0% |
| ! | GTCAAAAACAACACTTAAAA+AGG | - | chr3_1:52049272-52049291 | None:intergenic | 25.0% |
| ! | TATTCTTAGCTAGTAAAATC+TGG | + | chr3_1:52049669-52049688 | Msa0361490:intron | 25.0% |
| ! | AACAAAGACAAAAACCAATA+TGG | - | chr3_1:52049718-52049737 | None:intergenic | 25.0% |
| !!! | ATGATTTTTCTTGTTTTCCA+TGG | - | chr3_1:52049837-52049856 | None:intergenic | 25.0% |
| ! | TATGTGAATAAACAAACCTT+TGG | + | chr3_1:52050261-52050280 | Msa0361490:intron | 25.0% |
| ! | TGTTACAATAAAGGAAAACT+TGG | - | chr3_1:52050290-52050309 | None:intergenic | 25.0% |
| ! | CCATAGTTATGTTACAATAA+AGG | - | chr3_1:52050299-52050318 | None:intergenic | 25.0% |
| ! | CCTTTATTGTAACATAACTA+TGG | + | chr3_1:52050296-52050315 | Msa0361490:intron | 25.0% |
| !! | AATTTCATTTAGGTTCATTG+CGG | + | chr3_1:52050462-52050481 | Msa0361490:intron | 25.0% |
| ! | AAATAAACAAGGTGATTTCA+TGG | - | chr3_1:52050669-52050688 | None:intergenic | 25.0% |
| !!! | GAAATCACCTTGTTTATTTT+TGG | + | chr3_1:52050670-52050689 | Msa0361490:intron | 25.0% |
| !! | CTAAACTGGATTTTTAATCT+TGG | + | chr3_1:52050704-52050723 | Msa0361490:intron | 25.0% |
| ! | TTATAGGATTTCAGATAAAG+AGG | + | chr3_1:52050807-52050826 | Msa0361490:intron | 25.0% |
| ! | TATAGGATTTCAGATAAAGA+GGG | + | chr3_1:52050808-52050827 | Msa0361490:intron | 25.0% |
| !!! | GGTTCTAAAATTTGAACAAA+TGG | + | chr3_1:52051961-52051980 | Msa0361490:CDS | 25.0% |
| ! | ATTTCATCCAAAATCACATT+TGG | - | chr3_1:52052394-52052413 | None:intergenic | 25.0% |
| ! | AAAATGCAAGATTTACAACT+TGG | - | chr3_1:52052444-52052463 | None:intergenic | 25.0% |
| ! | ATTACATAGGACATTTCATT+CGG | + | chr3_1:52052503-52052522 | Msa0361490:three_prime_UTR | 25.0% |
| !! | GAAAATTGGTTTGTATTGTG+AGG | + | chr3_1:52046052-52046071 | Msa0361490:five_prime_UTR | 30.0% |
| AATCTGAATCTCCATTCATT+AGG | + | chr3_1:52046232-52046251 | Msa0361490:intron | 30.0% | |
| ATCTGAATCTCCATTCATTA+GGG | + | chr3_1:52046233-52046252 | Msa0361490:intron | 30.0% | |
| ! | GGTTTGATGTGTTTTATGTT+TGG | + | chr3_1:52046259-52046278 | Msa0361490:intron | 30.0% |
| ATTCAGTAGCATACATTACA+CGG | - | chr3_1:52046471-52046490 | None:intergenic | 30.0% | |
| CTATTTATGTTAGCTCAGTT+TGG | + | chr3_1:52046548-52046567 | Msa0361490:intron | 30.0% | |
| TATGATAAAAGATATAGGCC+CGG | + | chr3_1:52046634-52046653 | Msa0361490:intron | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr3_1:52046780-52046799 | Msa0361490:intron | 30.0% |
| TTTGGGAGAACTTATGAAAA+CGG | - | chr3_1:52046854-52046873 | None:intergenic | 30.0% | |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | - | chr3_1:52046871-52046890 | None:intergenic | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | - | chr3_1:52046872-52046891 | None:intergenic | 30.0% |
| CTCTTTATATTCCGTATTCA+TGG | + | chr3_1:52047326-52047345 | Msa0361490:intron | 30.0% | |
| ATAATTCAACAACAGCATGT+TGG | - | chr3_1:52047433-52047452 | None:intergenic | 30.0% | |
| AAACATAGGTTCGATTGATA+TGG | + | chr3_1:52047569-52047588 | Msa0361490:intron | 30.0% | |
| TTGAATGATAGCCATAATCA+TGG | - | chr3_1:52047616-52047635 | None:intergenic | 30.0% | |
| TTAAAATTTGTCGATATCCC+AGG | + | chr3_1:52047666-52047685 | Msa0361490:intron | 30.0% | |
| ! | TTTTGCTGAAGAAAAGAAAG+TGG | + | chr3_1:52047798-52047817 | Msa0361490:intron | 30.0% |
| !!! | GAAAAGCTTTTTTCTTCTAG+CGG | - | chr3_1:52047856-52047875 | None:intergenic | 30.0% |
| ! | CTGGTATGCAAAATCATTTT+GGG | + | chr3_1:52047994-52048013 | Msa0361490:CDS | 30.0% |
| TTATAGCAGTGGAAATTAAG+GGG | - | chr3_1:52048109-52048128 | None:intergenic | 30.0% | |
| GTTATAGCAGTGGAAATTAA+GGG | - | chr3_1:52048110-52048129 | None:intergenic | 30.0% | |
| TGTTATAGCAGTGGAAATTA+AGG | - | chr3_1:52048111-52048130 | None:intergenic | 30.0% | |
| ! | TCATTTTCCTTTTATGGTGT+GGG | - | chr3_1:52048337-52048356 | None:intergenic | 30.0% |
| ! | ATCATTTTCCTTTTATGGTG+TGG | - | chr3_1:52048338-52048357 | None:intergenic | 30.0% |
| ! | AGCTGATCATTTTCCTTTTA+TGG | - | chr3_1:52048343-52048362 | None:intergenic | 30.0% |
| CTAAATGTTGTCTTGGTTTA+AGG | + | chr3_1:52048361-52048380 | Msa0361490:intron | 30.0% | |
| !! | GGATAAAACTCTAAAACACT+TGG | - | chr3_1:52048480-52048499 | None:intergenic | 30.0% |
| !!! | GTTTTAGAGTTTTATCCTTG+TGG | + | chr3_1:52048483-52048502 | Msa0361490:intron | 30.0% |
| GTTGAATTTACGCACAATAT+AGG | + | chr3_1:52048526-52048545 | Msa0361490:intron | 30.0% | |
| !! | CGGTCTTATTGAAATTCAAA+GGG | + | chr3_1:52048549-52048568 | Msa0361490:intron | 30.0% |
| TAGCATGCTTCAAAAAGATA+TGG | - | chr3_1:52048932-52048951 | None:intergenic | 30.0% | |
| !! | AGTGTTTTGTTAGTGTAGTT+TGG | + | chr3_1:52049067-52049086 | Msa0361490:intron | 30.0% |
| AACACTTAAAAAGGAATGGA+GGG | - | chr3_1:52049263-52049282 | None:intergenic | 30.0% | |
| GTCAAAGTAGATTATGTGAA+TGG | + | chr3_1:52049451-52049470 | Msa0361490:intron | 30.0% | |
| AAAGTAGATTATGTGAATGG+TGG | + | chr3_1:52049454-52049473 | Msa0361490:intron | 30.0% | |
| CTAAGAATAGTTCATTGATG+GGG | - | chr3_1:52049658-52049677 | None:intergenic | 30.0% | |
| GCTAAGAATAGTTCATTGAT+GGG | - | chr3_1:52049659-52049678 | None:intergenic | 30.0% | |
| AGCTAAGAATAGTTCATTGA+TGG | - | chr3_1:52049660-52049679 | None:intergenic | 30.0% | |
| ATTTCGTCGTCTTAACATTT+CGG | + | chr3_1:52049752-52049771 | Msa0361490:intron | 30.0% | |
| AAAGTAATTAATGGCAGATG+AGG | - | chr3_1:52049808-52049827 | None:intergenic | 30.0% | |
| ATATGTGTGTGAAGTAGATA+TGG | + | chr3_1:52049880-52049899 | Msa0361490:intron | 30.0% | |
| !! | AATCTAGAACCTAGATTTTG+AGG | - | chr3_1:52049948-52049967 | None:intergenic | 30.0% |
| TAACTATGGTTATCATCACA+AGG | + | chr3_1:52050310-52050329 | Msa0361490:intron | 30.0% | |
| AACTATGGTTATCATCACAA+GGG | + | chr3_1:52050311-52050330 | Msa0361490:intron | 30.0% | |
| CATCTTGGAAAAAATTTAGG+TGG | + | chr3_1:52050386-52050405 | Msa0361490:intron | 30.0% | |
| GTTTGTGTACTTGAATCTAT+AGG | + | chr3_1:52050408-52050427 | Msa0361490:intron | 30.0% | |
| ! | ATTTCATTTAGGTTCATTGC+GGG | + | chr3_1:52050463-52050482 | Msa0361490:intron | 30.0% |
| CACAAACATTGAATTGGAAA+AGG | - | chr3_1:52050523-52050542 | None:intergenic | 30.0% | |
| ! | CTTTTCCAATTCAATGTTTG+TGG | + | chr3_1:52050521-52050540 | Msa0361490:intron | 30.0% |
| AATTCAATGTTTGTGGCATT+GGG | + | chr3_1:52050528-52050547 | Msa0361490:intron | 30.0% | |
| AAAATCCAGTTTAGAGAAGA+GGG | - | chr3_1:52050698-52050717 | None:intergenic | 30.0% | |
| AAAAATCCAGTTTAGAGAAG+AGG | - | chr3_1:52050699-52050718 | None:intergenic | 30.0% | |
| ! | CTGGATTTTTAATCTTGGTT+TGG | + | chr3_1:52050709-52050728 | Msa0361490:intron | 30.0% |
| TTAAGTCTCATAAAGTGGAA+GGG | + | chr3_1:52051666-52051685 | Msa0361490:CDS | 30.0% | |
| AAAGGTGGATAGAAAAATGT+TGG | + | chr3_1:52051901-52051920 | Msa0361490:CDS | 30.0% | |
| GCAAAGAAAAAGATAAGAGA+TGG | + | chr3_1:52052104-52052123 | Msa0361490:CDS | 30.0% | |
| GAAAAAGAAAGAAATCTCAC+AGG | + | chr3_1:52052227-52052246 | Msa0361490:three_prime_UTR | 30.0% | |
| TGCTTGGTTTACTATATGTT+TGG | + | chr3_1:52052357-52052376 | Msa0361490:three_prime_UTR | 30.0% | |
| GCTTGGTTTACTATATGTTT+GGG | + | chr3_1:52052358-52052377 | Msa0361490:three_prime_UTR | 30.0% | |
| ! | TTGTTTGCCAAATGTGATTT+TGG | + | chr3_1:52052384-52052403 | Msa0361490:three_prime_UTR | 30.0% |
| ! | AAATTGACTTTGCGCTTATT+TGG | + | chr3_1:52052410-52052429 | Msa0361490:three_prime_UTR | 30.0% |
| AGAAGGGAGAAAGAAAAAGA+AGG | + | chr3_1:52046030-52046049 | Msa0361490:five_prime_UTR | 35.0% | |
| !! | AATTGGTTTGTATTGTGAGG+TGG | + | chr3_1:52046055-52046074 | Msa0361490:five_prime_UTR | 35.0% |
| CATGTAATTGAAGTTCCAGT+TGG | - | chr3_1:52046120-52046139 | None:intergenic | 35.0% | |
| TTGAAATTGAAGATACCTCG+AGG | - | chr3_1:52046207-52046226 | None:intergenic | 35.0% | |
| AATCTCCATTCATTAGGGTT+TGG | + | chr3_1:52046238-52046257 | Msa0361490:intron | 35.0% | |
| TCAAACCAAACCCTAATGAA+TGG | - | chr3_1:52046246-52046265 | None:intergenic | 35.0% | |
| CTACTGAATGCCTAAAACAA+TGG | + | chr3_1:52046482-52046501 | Msa0361490:intron | 35.0% | |
| ACAACTTTGCCCAAAATTTG+GGG | - | chr3_1:52046527-52046546 | None:intergenic | 35.0% | |
| CACAACTTTGCCCAAAATTT+GGG | - | chr3_1:52046528-52046547 | None:intergenic | 35.0% | |
| AATAAGCTCTTTATCCCAAC+CGG | - | chr3_1:52046656-52046675 | None:intergenic | 35.0% | |
| !!! | GACTTTATTTTGGGTCTCTT+TGG | - | chr3_1:52046923-52046942 | None:intergenic | 35.0% |
| GCTTATTTGAGCACATATAC+AGG | - | chr3_1:52047071-52047090 | None:intergenic | 35.0% | |
| GCTGTTATGAATTCTGAACA+TGG | - | chr3_1:52047268-52047287 | None:intergenic | 35.0% | |
| AAACAAGGACACCATGAATA+CGG | - | chr3_1:52047340-52047359 | None:intergenic | 35.0% | |
| ! | TGTCCTTGTTTATATGAGTC+TGG | + | chr3_1:52047349-52047368 | Msa0361490:intron | 35.0% |
| ! | GTCCTTGTTTATATGAGTCT+GGG | + | chr3_1:52047350-52047369 | Msa0361490:intron | 35.0% |
| TTGTTTATATGAGTCTGGGT+GGG | + | chr3_1:52047354-52047373 | Msa0361490:intron | 35.0% | |
| ACAATTCACCCAGTAAAATC+CGG | - | chr3_1:52047389-52047408 | None:intergenic | 35.0% | |
| TAGAAACTGGTGCAAAACAT+AGG | + | chr3_1:52047555-52047574 | Msa0361490:intron | 35.0% | |
| CTATCATTCAAAGAATTCCG+AGG | + | chr3_1:52047625-52047644 | Msa0361490:intron | 35.0% | |
| ATTCAGTCTAAAAACAGCCT+CGG | - | chr3_1:52047645-52047664 | None:intergenic | 35.0% | |
| ATAATAATCTCGCACGCTTT+AGG | - | chr3_1:52047744-52047763 | None:intergenic | 35.0% | |
| TGTAGATTCCGTTACAAAGA+TGG | + | chr3_1:52047889-52047908 | Msa0361490:CDS | 35.0% | |
| GTAGATTCCGTTACAAAGAT+GGG | + | chr3_1:52047890-52047909 | Msa0361490:CDS | 35.0% | |
| GATGCAATTGGATAATTCAG+TGG | + | chr3_1:52047933-52047952 | Msa0361490:CDS | 35.0% | |
| TCCTACATCTGAAAATATGC+TGG | + | chr3_1:52047975-52047994 | Msa0361490:CDS | 35.0% | |
| ! | ACCAGCATATTTTCAGATGT+AGG | - | chr3_1:52047979-52047998 | None:intergenic | 35.0% |
| ! | GCTGGTATGCAAAATCATTT+TGG | + | chr3_1:52047993-52048012 | Msa0361490:CDS | 35.0% |
| !!! | TGACGAACTGTTGATTTTTC+AGG | - | chr3_1:52048154-52048173 | None:intergenic | 35.0% |
| GTAAAGGTAAAGGGTAATGA+GGG | - | chr3_1:52048314-52048333 | None:intergenic | 35.0% | |
| ! | CATTTTCCTTTTATGGTGTG+GGG | - | chr3_1:52048336-52048355 | None:intergenic | 35.0% |
| TGATCAGCTAAATGTTGTCT+TGG | + | chr3_1:52048354-52048373 | Msa0361490:intron | 35.0% | |
| TTAATGTGTTAAGTCCTCAC+AGG | + | chr3_1:52048419-52048438 | Msa0361490:intron | 35.0% | |
| !!! | GCTTTTGGGATAGTTATTCA+CGG | + | chr3_1:52048446-52048465 | Msa0361490:intron | 35.0% |
| AAAGAATAACATGGACCACA+AGG | - | chr3_1:52048501-52048520 | None:intergenic | 35.0% | |
| GAATTTACGCACAATATAGG+CGG | + | chr3_1:52048529-52048548 | Msa0361490:intron | 35.0% | |
| !! | GCGGTCTTATTGAAATTCAA+AGG | + | chr3_1:52048548-52048567 | Msa0361490:intron | 35.0% |
| TTACAGGCCTAAATCTAGTT+AGG | + | chr3_1:52048616-52048635 | Msa0361490:intron | 35.0% | |
| ACCAATATCTTGCTGACAAT+TGG | + | chr3_1:52048865-52048884 | Msa0361490:intron | 35.0% | |
| TCCAATTGTCAGCAAGATAT+TGG | - | chr3_1:52048869-52048888 | None:intergenic | 35.0% | |
| CAACACTTAAAAAGGAATGG+AGG | - | chr3_1:52049264-52049283 | None:intergenic | 35.0% | |
| TCAAATGACCACCCTTAAAA+AGG | + | chr3_1:52049483-52049502 | Msa0361490:intron | 35.0% | |
| CACTCTTTATTGTGCCATAT+TGG | + | chr3_1:52049701-52049720 | Msa0361490:intron | 35.0% | |
| ! | TTACAACAACGATGTCGATT+TGG | + | chr3_1:52050042-52050061 | Msa0361490:CDS | 35.0% |
| ATCTATTAGCAGCTTACCAT+GGG | - | chr3_1:52050085-52050104 | None:intergenic | 35.0% | |
| AATCTATTAGCAGCTTACCA+TGG | - | chr3_1:52050086-52050105 | None:intergenic | 35.0% | |
| !! | ATACTTGCACTTTTAAGTGC+AGG | + | chr3_1:52050161-52050180 | Msa0361490:intron | 35.0% |
| GCAGGTATTCGATAAGAATA+TGG | + | chr3_1:52050179-52050198 | Msa0361490:intron | 35.0% | |
| ! | ACATAAACTAGCTCTCTGAT+CGG | - | chr3_1:52050246-52050265 | None:intergenic | 35.0% |
| TGTGTACTTGAATCTATAGG+AGG | + | chr3_1:52050411-52050430 | Msa0361490:intron | 35.0% | |
| GTGTACTTGAATCTATAGGA+GGG | + | chr3_1:52050412-52050431 | Msa0361490:intron | 35.0% | |
| CAATGCCACAAACATTGAAT+TGG | - | chr3_1:52050529-52050548 | None:intergenic | 35.0% | |
| CAATTCAATGTTTGTGGCAT+TGG | + | chr3_1:52050527-52050546 | Msa0361490:intron | 35.0% | |
| ATTCAATGTTTGTGGCATTG+GGG | + | chr3_1:52050529-52050548 | Msa0361490:intron | 35.0% | |
| AAATCCAGTTTAGAGAAGAG+GGG | - | chr3_1:52050697-52050716 | None:intergenic | 35.0% | |
| AAATAGACGCATGGTGTATT+AGG | - | chr3_1:52050752-52050771 | None:intergenic | 35.0% | |
| CACATTTGAAAATAGACGCA+TGG | - | chr3_1:52050761-52050780 | None:intergenic | 35.0% | |
| ! | TGCGTCTATTTTCAAATGTG+TGG | + | chr3_1:52050761-52050780 | Msa0361490:intron | 35.0% |
| !!! | TTGCTATTTTATGCCTGTTG+AGG | + | chr3_1:52050784-52050803 | Msa0361490:intron | 35.0% |
| TTTATGCCTGTTGAGGTTAT+AGG | + | chr3_1:52050791-52050810 | Msa0361490:intron | 35.0% | |
| TGAAATCCTATAACCTCAAC+AGG | - | chr3_1:52050800-52050819 | None:intergenic | 35.0% | |
| GAATTGTAGTTTGATGAGTG+AGG | + | chr3_1:52050854-52050873 | Msa0361490:intron | 35.0% | |
| ACTCCTAATACTGTTCAAAC+AGG | + | chr3_1:52050920-52050939 | Msa0361490:intron | 35.0% | |
| CTCCTAATACTGTTCAAACA+GGG | + | chr3_1:52050921-52050940 | Msa0361490:intron | 35.0% | |
| TACCCTGTTTGAACAGTATT+AGG | - | chr3_1:52050926-52050945 | None:intergenic | 35.0% | |
| CAAGCAGATGCTATAACTAT+AGG | - | chr3_1:52051052-52051071 | None:intergenic | 35.0% | |
| TAGTTATAGCATCTGCTTGT+TGG | + | chr3_1:52051053-52051072 | Msa0361490:intron | 35.0% | |
| TTAGAACAATCCGATTACAG+CGG | + | chr3_1:52051404-52051423 | Msa0361490:CDS | 35.0% | |
| GATAGTACCAACTTACAGAA+AGG | + | chr3_1:52051464-52051483 | Msa0361490:CDS | 35.0% | |
| CTTCGCAAATATAGCAGTTT+CGG | - | chr3_1:52051498-52051517 | None:intergenic | 35.0% | |
| AAACTGCTATATTTGCGAAG+TGG | + | chr3_1:52051498-52051517 | Msa0361490:CDS | 35.0% | |
| AACTGCTATATTTGCGAAGT+GGG | + | chr3_1:52051499-52051518 | Msa0361490:CDS | 35.0% | |
| ! | TTCCAAAATGATGGCGAATA+TGG | + | chr3_1:52051544-52051563 | Msa0361490:CDS | 35.0% |
| ! | TCCAAAATGATGGCGAATAT+GGG | + | chr3_1:52051545-52051564 | Msa0361490:CDS | 35.0% |
| AGACTTAAGTGCATGATCTA+AGG | - | chr3_1:52051654-52051673 | None:intergenic | 35.0% | |
| TGCACTTAAGTCTCATAAAG+TGG | + | chr3_1:52051661-52051680 | Msa0361490:CDS | 35.0% | |
| CTTAAGTCTCATAAAGTGGA+AGG | + | chr3_1:52051665-52051684 | Msa0361490:CDS | 35.0% | |
| CAGAAAAGCAAAGGAAGAAA+CGG | + | chr3_1:52051693-52051712 | Msa0361490:CDS | 35.0% | |
| TTTATTAGCGAGAAGACATC+TGG | - | chr3_1:52051800-52051819 | None:intergenic | 35.0% | |
| CTTCTTCATTGATCCATTGT+TGG | - | chr3_1:52051852-52051871 | None:intergenic | 35.0% | |
| TGCTTATGAGAATGATGTGA+AGG | + | chr3_1:52051925-52051944 | Msa0361490:CDS | 35.0% | |
| TTCATAGCAGCATCATAAAC+AGG | - | chr3_1:52052010-52052029 | None:intergenic | 35.0% | |
| TTTGCTAACAACATCATCTG+AGG | - | chr3_1:52052089-52052108 | None:intergenic | 35.0% | |
| CATTCAATATATCCTCATGC+AGG | + | chr3_1:52052186-52052205 | Msa0361490:three_prime_UTR | 35.0% | |
| ACCAGTTGTAGACATTACAT+AGG | + | chr3_1:52052490-52052509 | Msa0361490:three_prime_UTR | 35.0% | |
| TCCTATGTAATGTCTACAAC+TGG | - | chr3_1:52052494-52052513 | None:intergenic | 35.0% | |
| !!! | GAAGTTCCAGTTGGTTTTCA+AGG | - | chr3_1:52046111-52046130 | None:intergenic | 40.0% |
| ! | CTTGTCGTAATTGATTCTGG+AGG | - | chr3_1:52046422-52046441 | None:intergenic | 40.0% |
| ! | CCACTTGTCGTAATTGATTC+TGG | - | chr3_1:52046425-52046444 | None:intergenic | 40.0% |
| CCAGAATCAATTACGACAAG+TGG | + | chr3_1:52046422-52046441 | Msa0361490:intron | 40.0% | |
| TTACGACAAGTGGAACCTTT+AGG | + | chr3_1:52046432-52046451 | Msa0361490:intron | 40.0% | |
| CAACTTTGCCCAAAATTTGG+GGG | - | chr3_1:52046526-52046545 | None:intergenic | 40.0% | |
| GCACAACTTTGCCCAAAATT+TGG | - | chr3_1:52046529-52046548 | None:intergenic | 40.0% | |
| ATAAAAGATATAGGCCCGGT+TGG | + | chr3_1:52046638-52046657 | Msa0361490:intron | 40.0% | |
| TAAAAGATATAGGCCCGGTT+GGG | + | chr3_1:52046639-52046658 | Msa0361490:intron | 40.0% | |
| ATAAGCTCTTTATCCCAACC+GGG | - | chr3_1:52046655-52046674 | None:intergenic | 40.0% | |
| CAGTCTCACAAAACTTATGC+TGG | + | chr3_1:52046874-52046893 | Msa0361490:intron | 40.0% | |
| TAAGCCAATCCAAATAGCCT+TGG | + | chr3_1:52047086-52047105 | Msa0361490:intron | 40.0% | |
| GTAACCAAGGCTATTTGGAT+TGG | - | chr3_1:52047093-52047112 | None:intergenic | 40.0% | |
| TGAGTGTAACCAAGGCTATT+TGG | - | chr3_1:52047098-52047117 | None:intergenic | 40.0% | |
| TCTGCTATTGAGTGTAACCA+AGG | - | chr3_1:52047106-52047125 | None:intergenic | 40.0% | |
| TACACTCAATAGCAGAGTTG+TGG | + | chr3_1:52047110-52047129 | Msa0361490:intron | 40.0% | |
| ! | TCAGTCAGCTAAGCTAGTTT+AGG | + | chr3_1:52047196-52047215 | Msa0361490:intron | 40.0% |
| CACCCAGACTCATATAAACA+AGG | - | chr3_1:52047355-52047374 | None:intergenic | 40.0% | |
| CTTGTTTATATGAGTCTGGG+TGG | + | chr3_1:52047353-52047372 | Msa0361490:intron | 40.0% | |
| !! | TCTGGGTGGGTTAAATATAC+CGG | + | chr3_1:52047367-52047386 | Msa0361490:intron | 40.0% |
| TTCAACAACAGCATGTTGGT+GGG | - | chr3_1:52047429-52047448 | None:intergenic | 40.0% | |
| ATTCAACAACAGCATGTTGG+TGG | - | chr3_1:52047430-52047449 | None:intergenic | 40.0% | |
| GGGATTGAGATTGTAGAAAC+TGG | + | chr3_1:52047542-52047561 | Msa0361490:intron | 40.0% | |
| TAGGTTCGATTGATATGGCT+TGG | + | chr3_1:52047574-52047593 | Msa0361490:intron | 40.0% | |
| ! | GGAACTTGTTCAGGCAATTA+AGG | + | chr3_1:52047696-52047715 | Msa0361490:CDS | 40.0% |
| CAATGGTCAAGTGATGCAAT+TGG | + | chr3_1:52047921-52047940 | Msa0361490:CDS | 40.0% | |
| AAATAGGCAACACAGGCATA+TGG | + | chr3_1:52048211-52048230 | Msa0361490:intron | 40.0% | |
| ! | GTAAAGGGTAATGAGGGTAT+TGG | - | chr3_1:52048308-52048327 | None:intergenic | 40.0% |
| GGTAAAGGTAAAGGGTAATG+AGG | - | chr3_1:52048315-52048334 | None:intergenic | 40.0% | |
| !!! | TCCTCACAGGTTTAGCTTTT+GGG | + | chr3_1:52048432-52048451 | Msa0361490:intron | 40.0% |
| TGGGATAGTTATTCACGGTA+TGG | + | chr3_1:52048451-52048470 | Msa0361490:intron | 40.0% | |
| ATGCTACAATCGTGCAGTTT+AGG | + | chr3_1:52048946-52048965 | Msa0361490:intron | 40.0% | |
| TGCTACAATCGTGCAGTTTA+GGG | + | chr3_1:52048947-52048966 | Msa0361490:intron | 40.0% | |
| GTGTCACAGTTTCAAGAGTT+GGG | - | chr3_1:52049113-52049132 | None:intergenic | 40.0% | |
| TGTGTCACAGTTTCAAGAGT+TGG | - | chr3_1:52049114-52049133 | None:intergenic | 40.0% | |
| !! | GATTATGTGAATGGTGGACA+TGG | + | chr3_1:52049460-52049479 | Msa0361490:intron | 40.0% |
| CACCCTTAAAAAGGAACAGA+GGG | + | chr3_1:52049492-52049511 | Msa0361490:intron | 40.0% | |
| ! | CTCCCTCTGTTCCTTTTTAA+GGG | - | chr3_1:52049497-52049516 | None:intergenic | 40.0% |
| ! | ACTCCCTCTGTTCCTTTTTA+AGG | - | chr3_1:52049498-52049517 | None:intergenic | 40.0% |
| TGAAAGAGCTGATTACAACG+AGG | - | chr3_1:52050128-52050147 | None:intergenic | 40.0% | |
| AAGGAAAACTTGGACACCAA+AGG | - | chr3_1:52050280-52050299 | None:intergenic | 40.0% | |
| TACTTGAATCTATAGGAGGG+TGG | + | chr3_1:52050415-52050434 | Msa0361490:intron | 40.0% | |
| ! | TTCAATGTTTGTGGCATTGG+GGG | + | chr3_1:52050530-52050549 | Msa0361490:intron | 40.0% |
| GTGAAATGCTTCACTCATTC+AGG | + | chr3_1:52050552-52050571 | Msa0361490:intron | 40.0% | |
| AATCCAGTTTAGAGAAGAGG+GGG | - | chr3_1:52050696-52050715 | None:intergenic | 40.0% | |
| ! | TGTTCAACTGACTTCCCTTA+AGG | + | chr3_1:52051154-52051173 | Msa0361490:CDS | 40.0% |
| TGTTGGGGCATATTCCTTAA+GGG | - | chr3_1:52051171-52051190 | None:intergenic | 40.0% | |
| TTGTTGGGGCATATTCCTTA+AGG | - | chr3_1:52051172-52051191 | None:intergenic | 40.0% | |
| AGGAATATGCCCCAACAATT+TGG | + | chr3_1:52051174-52051193 | Msa0361490:CDS | 40.0% | |
| CAAATGCAAATGCAGGCATT+TGG | + | chr3_1:52051234-52051253 | Msa0361490:CDS | 40.0% | |
| !! | CAAGTTGTTTTCCGAGATGA+TGG | + | chr3_1:52051302-52051321 | Msa0361490:CDS | 40.0% |
| ! | GTAATCGGATTGTTCTAAGC+TGG | - | chr3_1:52051402-52051421 | None:intergenic | 40.0% |
| ! | ACCACAGGGTTTAGGATTTA+TGG | + | chr3_1:52051442-52051461 | Msa0361490:CDS | 40.0% |
| TCCATAAATCCTAAACCCTG+TGG | - | chr3_1:52051446-52051465 | None:intergenic | 40.0% | |
| TTGAACGCCTTTCTGTAAGT+TGG | - | chr3_1:52051474-52051493 | None:intergenic | 40.0% | |
| ! | ACCCATATTCGCCATCATTT+TGG | - | chr3_1:52051549-52051568 | None:intergenic | 40.0% |
| ! | TATGGGTTACCAAGAAGGAA+TGG | + | chr3_1:52051562-52051581 | Msa0361490:CDS | 40.0% |
| ! | ATGGGTTACCAAGAAGGAAT+GGG | + | chr3_1:52051563-52051582 | Msa0361490:CDS | 40.0% |
| ! | TACCAAGAAGGAATGGGTTT+AGG | + | chr3_1:52051569-52051588 | Msa0361490:CDS | 40.0% |
| AAGGGAACACAGAAAAGCAA+AGG | + | chr3_1:52051684-52051703 | Msa0361490:CDS | 40.0% | |
| AGGTTCAGGTGAAGGTAAAA+AGG | + | chr3_1:52051883-52051902 | Msa0361490:CDS | 40.0% | |
| TTCAGGTGAAGGTAAAAAGG+TGG | + | chr3_1:52051886-52051905 | Msa0361490:CDS | 40.0% | |
| ! | TGTGAAGGATTTGAAAGTGC+AGG | + | chr3_1:52051940-52051959 | Msa0361490:CDS | 40.0% |
| AAAATTAGTCCAAACCCGCA+AGG | + | chr3_1:52052030-52052049 | Msa0361490:CDS | 40.0% | |
| ! | AAGCTGTAAGTTTGCTTGCT+TGG | + | chr3_1:52052341-52052360 | Msa0361490:three_prime_UTR | 40.0% |
| CAAGATTTACAACTTGGACG+CGG | - | chr3_1:52052438-52052457 | None:intergenic | 40.0% | |
| ATTGTGAGGTGGAACGAGAA+TGG | + | chr3_1:52046066-52046085 | Msa0361490:exon | 45.0% | |
| TTGTGAGGTGGAACGAGAAT+GGG | + | chr3_1:52046067-52046086 | Msa0361490:exon | 45.0% | |
| GAGAGTCCTTGAAAACCAAC+TGG | + | chr3_1:52046102-52046121 | Msa0361490:CDS | 45.0% | |
| GTTCGGAATTGGTTGGATCA+AGG | - | chr3_1:52046183-52046202 | None:intergenic | 45.0% | |
| TGAAGATACCTCGAGGAGTT+CGG | - | chr3_1:52046200-52046219 | None:intergenic | 45.0% | |
| ! | CACCATTGCCCCCAAATTTT+GGG | + | chr3_1:52046515-52046534 | Msa0361490:intron | 45.0% |
| ! | GTCAGCTAAGCTAGTTTAGG+TGG | + | chr3_1:52047199-52047218 | Msa0361490:intron | 45.0% |
| AACAAGTTCCTCGTGAACCT+GGG | - | chr3_1:52047686-52047705 | None:intergenic | 45.0% | |
| TAGGTGAAGAAGTCCTTCCT+CGG | - | chr3_1:52047725-52047744 | None:intergenic | 45.0% | |
| TCAACATCTGCAGGATCAAG+TGG | - | chr3_1:52047826-52047845 | None:intergenic | 45.0% | |
| !!! | CTTTTTTCTTCTAGCGGCTC+TGG | - | chr3_1:52047850-52047869 | None:intergenic | 45.0% |
| ACCAACGCCCATCTTTGTAA+CGG | - | chr3_1:52047900-52047919 | None:intergenic | 45.0% | |
| !! | AAAGATGGGCGTTGGTACAA+TGG | + | chr3_1:52047904-52047923 | Msa0361490:CDS | 45.0% |
| GAAGGGAAAATAGGCAACAC+AGG | + | chr3_1:52048204-52048223 | Msa0361490:intron | 45.0% | |
| TGGTGTGGGGTAAAGGTAAA+GGG | - | chr3_1:52048323-52048342 | None:intergenic | 45.0% | |
| ATGGTGTGGGGTAAAGGTAA+AGG | - | chr3_1:52048324-52048343 | None:intergenic | 45.0% | |
| ! | CCTTTTATGGTGTGGGGTAA+AGG | - | chr3_1:52048330-52048349 | None:intergenic | 45.0% |
| CCTTTACCCCACACCATAAA+AGG | + | chr3_1:52048327-52048346 | Msa0361490:intron | 45.0% | |
| !!! | GTCCTCACAGGTTTAGCTTT+TGG | + | chr3_1:52048431-52048450 | Msa0361490:intron | 45.0% |
| TCCCAAAAGCTAAACCTGTG+AGG | - | chr3_1:52048436-52048455 | None:intergenic | 45.0% | |
| TCAAAGGGTTCTTGTGTGAG+TGG | + | chr3_1:52048564-52048583 | Msa0361490:intron | 45.0% | |
| CAAAGGGTTCTTGTGTGAGT+GGG | + | chr3_1:52048565-52048584 | Msa0361490:intron | 45.0% | |
| GCTACAATCGTGCAGTTTAG+GGG | + | chr3_1:52048948-52048967 | Msa0361490:intron | 45.0% | |
| CAGTTTCAAGAGTTGGGTCA+GGG | - | chr3_1:52049107-52049126 | None:intergenic | 45.0% | |
| ACAGTTTCAAGAGTTGGGTC+AGG | - | chr3_1:52049108-52049127 | None:intergenic | 45.0% | |
| ! | GTGCATTGACATGTGAGAAG+TGG | - | chr3_1:52049294-52049313 | None:intergenic | 45.0% |
| !! | CCTCTGTTCCTTTTTAAGGG+TGG | - | chr3_1:52049494-52049513 | None:intergenic | 45.0% |
| CCACCCTTAAAAAGGAACAG+AGG | + | chr3_1:52049491-52049510 | Msa0361490:intron | 45.0% | |
| TGATGGGGTGATTCAGTGAT+TGG | - | chr3_1:52049643-52049662 | None:intergenic | 45.0% | |
| TTAGCAGCTTACCATGGGAT+AGG | - | chr3_1:52050080-52050099 | None:intergenic | 45.0% | |
| GAGGGGGCCAAAAATAAACA+AGG | - | chr3_1:52050680-52050699 | None:intergenic | 45.0% | |
| GCAGTCTCAAATGCAAATGC+AGG | + | chr3_1:52051227-52051246 | Msa0361490:CDS | 45.0% | |
| TCGCAGAACTTCCATCATCT+CGG | - | chr3_1:52051316-52051335 | None:intergenic | 45.0% | |
| !! | GAAGCTTGGTGCACAAGATA+TGG | + | chr3_1:52051334-52051353 | Msa0361490:CDS | 45.0% |
| AGGCATGGCTTCCAAAATGA+TGG | + | chr3_1:52051535-52051554 | Msa0361490:CDS | 45.0% | |
| ! | GCGAATATGGGTTACCAAGA+AGG | + | chr3_1:52051557-52051576 | Msa0361490:CDS | 45.0% |
| AGCCTAAACCCATTCCTTCT+TGG | - | chr3_1:52051574-52051593 | None:intergenic | 45.0% | |
| ! | GGAATGGGTTTAGGCTTAAC+TGG | + | chr3_1:52051578-52051597 | Msa0361490:CDS | 45.0% |
| GGTTTAGGCTTAACTGGTCA+GGG | + | chr3_1:52051584-52051603 | Msa0361490:CDS | 45.0% | |
| GGTAGAACCTTCACTGGTAT+GGG | - | chr3_1:52051620-52051639 | None:intergenic | 45.0% | |
| TGGTAGAACCTTCACTGGTA+TGG | - | chr3_1:52051621-52051640 | None:intergenic | 45.0% | |
| TTAGGTGGTAGAACCTTCAC+TGG | - | chr3_1:52051626-52051645 | None:intergenic | 45.0% | |
| TGATCTAAGGACTGCTTAGG+TGG | - | chr3_1:52051641-52051660 | None:intergenic | 45.0% | |
| GCATGATCTAAGGACTGCTT+AGG | - | chr3_1:52051644-52051663 | None:intergenic | 45.0% | |
| CCAGAGGTGGTAAGAGAAAA+CGG | + | chr3_1:52051717-52051736 | Msa0361490:CDS | 45.0% | |
| CAGAGGTGGTAAGAGAAAAC+GGG | + | chr3_1:52051718-52051737 | Msa0361490:CDS | 45.0% | |
| AACACTCAACTAGCCATGCA+CGG | + | chr3_1:52051818-52051837 | Msa0361490:CDS | 45.0% | |
| ATGAAGAAGCCGCAAAGCAA+AGG | + | chr3_1:52051863-52051882 | Msa0361490:CDS | 45.0% | |
| TCACCTGAACCTTTGCTTTG+CGG | - | chr3_1:52051875-52051894 | None:intergenic | 45.0% | |
| CAAAGCAAAGGTTCAGGTGA+AGG | + | chr3_1:52051875-52051894 | Msa0361490:CDS | 45.0% | |
| ! | AACAACATCATCTGAGGCAG+AGG | - | chr3_1:52052083-52052102 | None:intergenic | 45.0% |
| TGACCACTCAGGTGAAAGAA+GGG | - | chr3_1:52052304-52052323 | None:intergenic | 45.0% | |
| !! | ATAACAAATAAAAAAAAATA+AGG | + | chr3_1:52048125-52048144 | Msa0361490:intron | 5.0% |
| !! | TAACAAATAAAAAAAAATAA+GGG | + | chr3_1:52048126-52048145 | Msa0361490:intron | 5.0% |
| !! | TATATGTTAATAAATAAATA+TGG | + | chr3_1:52049429-52049448 | Msa0361490:intron | 5.0% |
| TCGAGGAGTTCGGAATTGGT+TGG | - | chr3_1:52046190-52046209 | None:intergenic | 50.0% | |
| AACCAATTCCGAACTCCTCG+AGG | + | chr3_1:52046189-52046208 | Msa0361490:CDS | 50.0% | |
| TACCTCGAGGAGTTCGGAAT+TGG | - | chr3_1:52046194-52046213 | None:intergenic | 50.0% | |
| GGCACAGCAGTCAATCCTAA+AGG | - | chr3_1:52046450-52046469 | None:intergenic | 50.0% | |
| ! | GCACCATTGCCCCCAAATTT+TGG | + | chr3_1:52046514-52046533 | Msa0361490:intron | 50.0% |
| TGCCCAAAATTTGGGGGCAA+TGG | - | chr3_1:52046520-52046539 | None:intergenic | 50.0% | |
| AATAGCAGAGTTGTGGTCGC+TGG | + | chr3_1:52047117-52047136 | Msa0361490:intron | 50.0% | |
| GAACAAGTTCCTCGTGAACC+TGG | - | chr3_1:52047687-52047706 | None:intergenic | 50.0% | |
| ! | GGTTCACGAGGAACTTGTTC+AGG | + | chr3_1:52047687-52047706 | Msa0361490:intron | 50.0% |
| TCAGGCAATTAAGGATGCCG+AGG | + | chr3_1:52047705-52047724 | Msa0361490:CDS | 50.0% | |
| GCAATTAAGGATGCCGAGGA+AGG | + | chr3_1:52047709-52047728 | Msa0361490:CDS | 50.0% | |
| TCCGTTACAAAGATGGGCGT+TGG | + | chr3_1:52047896-52047915 | Msa0361490:CDS | 50.0% | |
| AGTAACTGTCGCCTATCCCA+TGG | + | chr3_1:52050066-52050085 | Msa0361490:CDS | 50.0% | |
| GGACGGCTTCCAAATTGTTG+GGG | - | chr3_1:52051186-52051205 | None:intergenic | 50.0% | |
| GGGACGGCTTCCAAATTGTT+GGG | - | chr3_1:52051187-52051206 | None:intergenic | 50.0% | |
| AGGGACGGCTTCCAAATTGT+TGG | - | chr3_1:52051188-52051207 | None:intergenic | 50.0% | |
| CCATATGCTTGACCCAGCAA+GGG | - | chr3_1:52051207-52051226 | None:intergenic | 50.0% | |
| CCTTGCTGGGTCAAGCATAT+GGG | + | chr3_1:52051205-52051224 | Msa0361490:CDS | 50.0% | |
| TTCGTCCCATGACTCAAGCT+CGG | - | chr3_1:52051267-52051286 | None:intergenic | 50.0% | |
| GAGTCATGGGACGAAAAAGC+TGG | + | chr3_1:52051272-52051291 | Msa0361490:CDS | 50.0% | |
| TGGGACGAAAAAGCTGGAGT+TGG | + | chr3_1:52051278-52051297 | Msa0361490:CDS | 50.0% | |
| GATGGAAGTTCTGCGAAGCT+TGG | + | chr3_1:52051320-52051339 | Msa0361490:CDS | 50.0% | |
| TTCCTCTGAGCCGCTGTAAT+CGG | - | chr3_1:52051417-52051436 | None:intergenic | 50.0% | |
| TCAGAGGAAGAGGAACCACA+GGG | + | chr3_1:52051428-52051447 | Msa0361490:CDS | 50.0% | |
| GAAGAGGAACCACAGGGTTT+AGG | + | chr3_1:52051434-52051453 | Msa0361490:CDS | 50.0% | |
| AAGTGGGAGAACCATACCAG+AGG | + | chr3_1:52051515-52051534 | Msa0361490:CDS | 50.0% | |
| !! | CATTTTGGAAGCCATGCCTC+TGG | - | chr3_1:52051534-52051553 | None:intergenic | 50.0% |
| GGGTTTAGGCTTAACTGGTC+AGG | + | chr3_1:52051583-52051602 | Msa0361490:CDS | 50.0% | |
| AGGCTTAACTGGTCAGGGTA+TGG | + | chr3_1:52051589-52051608 | Msa0361490:CDS | 50.0% | |
| GGTTGATCCCATACCAGTGA+AGG | + | chr3_1:52051610-52051629 | Msa0361490:CDS | 50.0% | |
| CAAAGGAAGAAACGGACCAG+AGG | + | chr3_1:52051701-52051720 | Msa0361490:CDS | 50.0% | |
| ! | CCGTTTTCTCTTACCACCTC+TGG | - | chr3_1:52051720-52051739 | None:intergenic | 50.0% |
| CACGGTGAAGCTTCCAACAA+TGG | + | chr3_1:52051836-52051855 | Msa0361490:CDS | 50.0% | |
| AAGCCGCAAAGCAAAGGTTC+AGG | + | chr3_1:52051869-52051888 | Msa0361490:CDS | 50.0% | |
| ! | TCAAAGCATCTGCCTGCATG+AGG | - | chr3_1:52052201-52052220 | None:intergenic | 50.0% |
| ACCACTCAGGTGAAAGAAGG+GGG | - | chr3_1:52052302-52052321 | None:intergenic | 50.0% | |
| GACCACTCAGGTGAAAGAAG+GGG | - | chr3_1:52052303-52052322 | None:intergenic | 50.0% | |
| CTGACCACTCAGGTGAAAGA+AGG | - | chr3_1:52052305-52052324 | None:intergenic | 50.0% | |
| CAGTGTAATGCTGACCACTC+AGG | - | chr3_1:52052315-52052334 | None:intergenic | 50.0% | |
| ! | CAACAGCATGTTGGTGGGTC+AGG | - | chr3_1:52047424-52047443 | None:intergenic | 55.0% |
| GTCGATATCCCAGGTTCACG+AGG | + | chr3_1:52047675-52047694 | Msa0361490:intron | 55.0% | |
| GCACAGCACTGTGTCTGCTT+CGG | - | chr3_1:52047767-52047786 | None:intergenic | 55.0% | |
| ! | GGCTCTGGTTCAACATCTGC+AGG | - | chr3_1:52047835-52047854 | None:intergenic | 55.0% |
| AAGAGTTGGGTCAGGGACTC+AGG | - | chr3_1:52049100-52049119 | None:intergenic | 55.0% | |
| TGGCCCCCTCTTCTCTAAAC+TGG | + | chr3_1:52050690-52050709 | Msa0361490:intron | 55.0% | |
| ATTTGGAAGCCGTCCCTTGC+TGG | + | chr3_1:52051191-52051210 | Msa0361490:CDS | 55.0% | |
| TTTGGAAGCCGTCCCTTGCT+GGG | + | chr3_1:52051192-52051211 | Msa0361490:CDS | 55.0% | |
| ATGCTTGACCCAGCAAGGGA+CGG | - | chr3_1:52051203-52051222 | None:intergenic | 55.0% | |
| CCCTTGCTGGGTCAAGCATA+TGG | + | chr3_1:52051204-52051223 | Msa0361490:CDS | 55.0% | |
| CCCATATGCTTGACCCAGCA+AGG | - | chr3_1:52051208-52051227 | None:intergenic | 55.0% | |
| AGCAGCCGAGCTTGAGTCAT+GGG | + | chr3_1:52051259-52051278 | Msa0361490:CDS | 55.0% | |
| ATCCGATTACAGCGGCTCAG+AGG | + | chr3_1:52051412-52051431 | Msa0361490:CDS | 55.0% | |
| TTACAGCGGCTCAGAGGAAG+AGG | + | chr3_1:52051418-52051437 | Msa0361490:CDS | 55.0% | |
| CTCAGAGGAAGAGGAACCAC+AGG | + | chr3_1:52051427-52051446 | Msa0361490:CDS | 55.0% | |
| GGAGAACCATACCAGAGGCA+TGG | + | chr3_1:52051520-52051539 | Msa0361490:CDS | 55.0% | |
| TGGAAGCCATGCCTCTGGTA+TGG | - | chr3_1:52051529-52051548 | None:intergenic | 55.0% | |
| AGGAAGAAACGGACCAGAGG+TGG | + | chr3_1:52051704-52051723 | Msa0361490:CDS | 55.0% | |
| GTTGGAAGCTTCACCGTGCA+TGG | - | chr3_1:52051834-52051853 | None:intergenic | 55.0% | |
| AGTCCAAACCCGCAAGGCAT+TGG | + | chr3_1:52052036-52052055 | Msa0361490:CDS | 55.0% | |
| CACTCAGGTGAAAGAAGGGG+GGG | - | chr3_1:52052300-52052319 | None:intergenic | 55.0% | |
| CCACTCAGGTGAAAGAAGGG+GGG | - | chr3_1:52052301-52052320 | None:intergenic | 55.0% | |
| GCAGAGTTGTGGTCGCTGGA+AGG | + | chr3_1:52047121-52047140 | Msa0361490:intron | 60.0% | |
| ! | ATGTTGGTGGGTCAGGCTGG+GGG | - | chr3_1:52047417-52047436 | None:intergenic | 60.0% |
| ! | CATGTTGGTGGGTCAGGCTG+GGG | - | chr3_1:52047418-52047437 | None:intergenic | 60.0% |
| ! | GCATGTTGGTGGGTCAGGCT+GGG | - | chr3_1:52047419-52047438 | None:intergenic | 60.0% |
| ! | AGCATGTTGGTGGGTCAGGC+TGG | - | chr3_1:52047420-52047439 | None:intergenic | 60.0% |
| AGTTGGGTCAGGGACTCAGG+AGG | - | chr3_1:52049097-52049116 | None:intergenic | 60.0% | |
| GAGCAGCCGAGCTTGAGTCA+TGG | + | chr3_1:52051258-52051277 | Msa0361490:CDS | 60.0% | |
| CAGCCAATGCCTTGCGGGTT+TGG | - | chr3_1:52052042-52052061 | None:intergenic | 60.0% | |
| !! | AACCCGCAAGGCATTGGCTG+AGG | + | chr3_1:52052042-52052061 | Msa0361490:CDS | 60.0% |
| AGCCTCAGCCAATGCCTTGC+GGG | - | chr3_1:52052047-52052066 | None:intergenic | 60.0% | |
| CAGCCTCAGCCAATGCCTTG+CGG | - | chr3_1:52052048-52052067 | None:intergenic | 60.0% | |
| CCCCCCTTCTTTCACCTGAG+TGG | + | chr3_1:52052298-52052317 | Msa0361490:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 52046027 | 52052531 | 52046027 | ID=Msa0361490;Name=Msa0361490 |
| chr3_1 | mRNA | 52046027 | 52052531 | 52046027 | ID=Msa0361490-mRNA-1;Parent=Msa0361490;Name=Msa0361490-mRNA-1;_AED=0.03;_eAED=0.03;_QI=58|0.5|0.6|1|0.5|0.4|5|393|508 |
| chr3_1 | exon | 52046027 | 52046210 | 52046027 | ID=Msa0361490-mRNA-1:exon:9320;Parent=Msa0361490-mRNA-1 |
| chr3_1 | exon | 52047688 | 52047787 | 52047688 | ID=Msa0361490-mRNA-1:exon:9321;Parent=Msa0361490-mRNA-1 |
| chr3_1 | exon | 52047809 | 52048056 | 52047809 | ID=Msa0361490-mRNA-1:exon:9322;Parent=Msa0361490-mRNA-1 |
| chr3_1 | exon | 52050027 | 52050087 | 52050027 | ID=Msa0361490-mRNA-1:exon:9323;Parent=Msa0361490-mRNA-1 |
| chr3_1 | exon | 52051147 | 52052531 | 52051147 | ID=Msa0361490-mRNA-1:exon:9324;Parent=Msa0361490-mRNA-1 |
| chr3_1 | five_prime_UTR | 52046027 | 52046084 | 52046027 | ID=Msa0361490-mRNA-1:five_prime_utr;Parent=Msa0361490-mRNA-1 |
| chr3_1 | CDS | 52046085 | 52046210 | 52046085 | ID=Msa0361490-mRNA-1:cds;Parent=Msa0361490-mRNA-1 |
| chr3_1 | CDS | 52047688 | 52047787 | 52047688 | ID=Msa0361490-mRNA-1:cds;Parent=Msa0361490-mRNA-1 |
| chr3_1 | CDS | 52047809 | 52048056 | 52047809 | ID=Msa0361490-mRNA-1:cds;Parent=Msa0361490-mRNA-1 |
| chr3_1 | CDS | 52050027 | 52050087 | 52050027 | ID=Msa0361490-mRNA-1:cds;Parent=Msa0361490-mRNA-1 |
| chr3_1 | CDS | 52051147 | 52052138 | 52051147 | ID=Msa0361490-mRNA-1:cds;Parent=Msa0361490-mRNA-1 |
| chr3_1 | three_prime_UTR | 52052139 | 52052531 | 52052139 | ID=Msa0361490-mRNA-1:three_prime_utr;Parent=Msa0361490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
