Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173540 | XP_024634409.1 | 96.213 | 581 | 21 | 1 | 12 | 591 | 6 | 586 | 0.0 | 1102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173540 | sp|Q9ZQC5|ICR2_ARATH | 45.526 | 637 | 229 | 15 | 13 | 591 | 7 | 583 | 9.74e-139 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173540 | A0A072VJQ3 | 96.213 | 581 | 21 | 1 | 12 | 591 | 6 | 586 | 0.0 | 1102 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0173540 | 0.802194 | 6.299153e-49 | -8.615850e-47 |
| Msa0027820 | Msa0173540 | 0.802152 | 6.424680e-49 | -8.615850e-47 |
| Msa0081520 | Msa0173540 | 0.829314 | 5.516570e-55 | -8.615850e-47 |
| Msa0116680 | Msa0173540 | 0.968039 | 4.097073e-128 | -8.615850e-47 |
| Msa0136650 | Msa0173540 | 0.846938 | 1.585879e-59 | -8.615850e-47 |
| Msa0173540 | Msa0173890 | 0.820976 | 5.159926e-53 | -8.615850e-47 |
| Msa0173540 | Msa0174450 | 0.859446 | 4.112583e-63 | -8.615850e-47 |
| Msa0173540 | Msa0221000 | 0.802309 | 5.964183e-49 | -8.615850e-47 |
| Msa0173540 | Msa0222560 | 0.812034 | 5.194538e-51 | -8.615850e-47 |
| Msa0173540 | Msa0225860 | 0.815251 | 1.017398e-51 | -8.615850e-47 |
| Msa0173540 | Msa0266180 | 0.814465 | 1.519396e-51 | -8.615850e-47 |
| Msa0173540 | Msa0275770 | 0.800602 | 1.334168e-48 | -8.615850e-47 |
| Msa0173540 | Msa0292400 | 0.800263 | 1.564714e-48 | -8.615850e-47 |
| Msa0173540 | Msa0300320 | 0.806554 | 7.775727e-50 | -8.615850e-47 |
| Msa0173540 | Msa0307270 | 0.812460 | 4.191849e-51 | -8.615850e-47 |
| Msa0173540 | Msa0369790 | 0.838901 | 2.183442e-57 | -8.615850e-47 |
| Msa0173540 | Msa0378720 | 0.832349 | 9.943859e-56 | -8.615850e-47 |
| Msa0173540 | Msa0380620 | 0.836780 | 7.654358e-57 | -8.615850e-47 |
| Msa0173540 | Msa0424160 | 0.800798 | 1.217170e-48 | -8.615850e-47 |
| Msa0173540 | Msa0428370 | 0.806018 | 1.008458e-49 | -8.615850e-47 |
| Msa0173540 | Msa0430260 | 0.845166 | 4.811416e-59 | -8.615850e-47 |
| Msa0173540 | Msa0464000 | 0.834394 | 3.073749e-56 | -8.615850e-47 |
| Msa0173540 | Msa0474730 | 0.828960 | 6.724037e-55 | -8.615850e-47 |
| Msa0173540 | Msa0500380 | 0.835403 | 1.712732e-56 | -8.615850e-47 |
| Msa0173540 | Msa0509550 | 0.845328 | 4.348051e-59 | -8.615850e-47 |
| Msa0173540 | Msa0519760 | 0.804572 | 2.025135e-49 | -8.615850e-47 |
| Msa0173540 | Msa0528570 | 0.801519 | 8.665086e-49 | -8.615850e-47 |
| Msa0173540 | Msa0529030 | 0.806583 | 7.665349e-50 | -8.615850e-47 |
| Msa0173540 | Msa0580370 | 0.811370 | 7.243456e-51 | -8.615850e-47 |
| Msa0173540 | Msa0591170 | 0.807309 | 5.384160e-50 | -8.615850e-47 |
| Msa0173540 | Msa0611210 | 0.806106 | 9.664921e-50 | -8.615850e-47 |
| Msa0173540 | Msa0626450 | 0.822553 | 2.227267e-53 | -8.615850e-47 |
| Msa0173540 | Msa0626490 | 0.821565 | 3.773304e-53 | -8.615850e-47 |
| Msa0173540 | Msa0651550 | 0.814825 | 1.265064e-51 | -8.615850e-47 |
| Msa0173540 | Msa0664600 | 0.822201 | 2.689435e-53 | -8.615850e-47 |
| Msa0173540 | Msa0715060 | 0.820468 | 6.751588e-53 | -8.615850e-47 |
| Msa0173540 | Msa0725770 | 0.811412 | 7.091608e-51 | -8.615850e-47 |
| Msa0173540 | Msa0727640 | 0.833802 | 4.325108e-56 | -8.615850e-47 |
| Msa0173540 | Msa0768990 | 0.846168 | 2.572124e-59 | -8.615850e-47 |
| Msa0173540 | Msa0795870 | 0.805209 | 1.490659e-49 | -8.615850e-47 |
| Msa0173540 | Msa0819170 | 0.821595 | 3.714314e-53 | -8.615850e-47 |
| Msa0173540 | Msa0823820 | 0.802401 | 5.708900e-49 | -8.615850e-47 |
| Msa0173540 | Msa0833650 | 0.805238 | 1.470279e-49 | -8.615850e-47 |
| Msa0173540 | Msa0861510 | 0.808031 | 3.782516e-50 | -8.615850e-47 |
| Msa0173540 | Msa0861600 | 0.814132 | 1.800323e-51 | -8.615850e-47 |
| Msa0173540 | Msa0863010 | 0.801717 | 7.891615e-49 | -8.615850e-47 |
| Msa0173540 | Msa0981320 | 0.817870 | 2.634992e-52 | -8.615850e-47 |
| Msa0173540 | Msa1011530 | 0.807348 | 5.282714e-50 | -8.615850e-47 |
| Msa0173540 | Msa1042160 | 0.815386 | 9.491663e-52 | -8.615850e-47 |
| Msa0173540 | Msa1042190 | 0.808788 | 2.606893e-50 | -8.615850e-47 |
| Msa0173540 | Msa1072940 | 0.804876 | 1.749992e-49 | -8.615850e-47 |
| Msa0173540 | Msa1123210 | 0.801996 | 6.918619e-49 | -8.615850e-47 |
| Msa0173540 | Msa1132840 | 0.810267 | 1.254971e-50 | -8.615850e-47 |
| Msa0173540 | Msa1160920 | 0.801048 | 1.081816e-48 | -8.615850e-47 |
| Msa0173540 | Msa1167470 | 0.811632 | 6.351836e-51 | -8.615850e-47 |
| Msa0173540 | Msa1200890 | 0.805112 | 1.561808e-49 | -8.615850e-47 |
| Msa0173540 | Msa1217210 | 0.818036 | 2.416969e-52 | -8.615850e-47 |
| Msa0173540 | Msa1348090 | 0.800855 | 1.184859e-48 | -8.615850e-47 |
| Msa0173540 | Msa1356830 | 0.822820 | 1.930206e-53 | -8.615850e-47 |
| Msa0173540 | Msa1405460 | 0.801557 | 8.512568e-49 | -8.615850e-47 |
| Msa0173540 | Msa1432500 | 0.807765 | 4.307885e-50 | -8.615850e-47 |
| Msa0173540 | Msa1437940 | 0.822595 | 2.178207e-53 | -8.615850e-47 |
| Msa0173540 | Msa1440960 | 0.805486 | 1.303996e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173540 | MtrunA17_Chr1g0181611 | 96.213 | 581 | 21 | 1 | 12 | 591 | 6 | 586 | 0.0 | 1102 |
| Msa0173540 | MtrunA17_Chr7g0263701 | 61.264 | 617 | 190 | 8 | 12 | 591 | 6 | 610 | 0.0 | 620 |
| Msa0173540 | MtrunA17_Chr4g0030031 | 44.089 | 626 | 287 | 10 | 12 | 588 | 6 | 617 | 3.68e-130 | 394 |
| Msa0173540 | MtrunA17_Chr2g0326021 | 41.763 | 431 | 182 | 10 | 196 | 588 | 133 | 532 | 9.20e-69 | 232 |
| Msa0173540 | MtrunA17_Chr5g0395261 | 29.044 | 272 | 146 | 9 | 18 | 255 | 38 | 296 | 1.28e-13 | 74.3 |
| Msa0173540 | MtrunA17_Chr4g0039981 | 27.439 | 328 | 191 | 11 | 12 | 292 | 7 | 334 | 4.49e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173540 | AT2G37080.3 | 45.669 | 635 | 229 | 15 | 13 | 591 | 7 | 581 | 2.96e-140 | 419 |
| Msa0173540 | AT2G37080.1 | 45.526 | 637 | 229 | 15 | 13 | 591 | 7 | 583 | 9.90e-140 | 418 |
| Msa0173540 | AT2G37080.2 | 45.526 | 637 | 229 | 15 | 13 | 591 | 7 | 583 | 9.90e-140 | 418 |
| Msa0173540 | AT5G60210.5 | 38.274 | 614 | 292 | 13 | 8 | 588 | 26 | 585 | 2.29e-99 | 314 |
| Msa0173540 | AT5G60210.3 | 38.274 | 614 | 292 | 13 | 8 | 588 | 26 | 585 | 2.29e-99 | 314 |
| Msa0173540 | AT5G60210.2 | 38.361 | 610 | 289 | 13 | 12 | 588 | 6 | 561 | 1.68e-98 | 311 |
| Msa0173540 | AT5G60210.4 | 38.361 | 610 | 289 | 13 | 12 | 588 | 6 | 561 | 1.68e-98 | 311 |
| Msa0173540 | AT5G60210.1 | 38.361 | 610 | 289 | 13 | 12 | 588 | 6 | 561 | 1.68e-98 | 311 |
| Msa0173540 | AT5G60210.6 | 38.361 | 610 | 289 | 13 | 12 | 588 | 6 | 561 | 1.68e-98 | 311 |
| Msa0173540 | AT3G53350.8 | 36.196 | 326 | 154 | 12 | 7 | 305 | 12 | 310 | 7.03e-41 | 153 |
| Msa0173540 | AT3G53350.8 | 33.750 | 320 | 103 | 8 | 280 | 591 | 187 | 405 | 9.67e-30 | 122 |
| Msa0173540 | AT3G53350.4 | 35.976 | 328 | 154 | 12 | 7 | 305 | 12 | 312 | 1.62e-40 | 152 |
| Msa0173540 | AT3G53350.4 | 33.750 | 320 | 103 | 8 | 280 | 591 | 189 | 407 | 8.63e-30 | 122 |
| Msa0173540 | AT3G53350.6 | 35.976 | 328 | 154 | 12 | 7 | 305 | 12 | 312 | 1.62e-40 | 152 |
| Msa0173540 | AT3G53350.6 | 33.750 | 320 | 103 | 8 | 280 | 591 | 189 | 407 | 8.63e-30 | 122 |
| Msa0173540 | AT3G53350.3 | 36.760 | 321 | 149 | 12 | 12 | 305 | 6 | 299 | 1.79e-40 | 152 |
| Msa0173540 | AT3G53350.3 | 33.438 | 320 | 104 | 8 | 280 | 591 | 176 | 394 | 3.84e-30 | 122 |
| Msa0173540 | AT3G53350.2 | 36.760 | 321 | 149 | 12 | 12 | 305 | 6 | 299 | 1.79e-40 | 152 |
| Msa0173540 | AT3G53350.2 | 33.438 | 320 | 104 | 8 | 280 | 591 | 176 | 394 | 3.84e-30 | 122 |
| Msa0173540 | AT3G53350.7 | 36.533 | 323 | 149 | 12 | 12 | 305 | 6 | 301 | 4.57e-40 | 151 |
| Msa0173540 | AT3G53350.7 | 33.438 | 320 | 104 | 8 | 280 | 591 | 178 | 396 | 4.28e-30 | 122 |
| Msa0173540 | AT3G53350.1 | 36.533 | 323 | 149 | 12 | 12 | 305 | 6 | 301 | 4.57e-40 | 151 |
| Msa0173540 | AT3G53350.1 | 33.438 | 320 | 104 | 8 | 280 | 591 | 178 | 396 | 4.28e-30 | 122 |
| Msa0173540 | AT3G53350.5 | 36.533 | 323 | 149 | 12 | 12 | 305 | 6 | 301 | 4.57e-40 | 151 |
| Msa0173540 | AT3G53350.5 | 33.438 | 320 | 104 | 8 | 280 | 591 | 178 | 396 | 4.28e-30 | 122 |
| Msa0173540 | AT3G53350.9 | 33.618 | 351 | 149 | 12 | 12 | 305 | 6 | 329 | 3.57e-36 | 140 |
| Msa0173540 | AT3G53350.9 | 33.750 | 320 | 103 | 8 | 280 | 591 | 206 | 424 | 2.02e-29 | 121 |
| Msa0173540 | AT1G78430.1 | 38.418 | 177 | 93 | 4 | 416 | 591 | 162 | 323 | 1.66e-21 | 96.3 |
| Msa0173540 | AT1G17140.1 | 33.632 | 223 | 125 | 10 | 378 | 591 | 135 | 343 | 4.95e-14 | 74.3 |
| Msa0173540 | AT1G17140.2 | 33.632 | 223 | 125 | 10 | 378 | 591 | 135 | 343 | 4.95e-14 | 74.3 |
Find 132 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAGTGGAGTTAGTTTATT+TGG | 0.132345 | 1_4:-58863139 | Msa0173540:five_prime_UTR |
| AGTCCATTGAATGCTGTTTC+TGG | 0.148564 | 1_4:+58861356 | None:intergenic |
| GGCTACAACAATTCTATTAT+TGG | 0.202521 | 1_4:-58860209 | Msa0173540:CDS |
| GTTATTTCCCTTGATTTAAA+TGG | 0.204532 | 1_4:+58859793 | None:intergenic |
| CTTTGTGTTGACTTGACATT+TGG | 0.212610 | 1_4:+58861900 | None:intergenic |
| ACATTTGGGCTCCTATCTTT+TGG | 0.249382 | 1_4:+58861915 | None:intergenic |
| TGCTGCACAGGCGTCGAATT+TGG | 0.249460 | 1_4:-58860366 | Msa0173540:CDS |
| ACAACAATGTTGAAGAAAAT+TGG | 0.253316 | 1_4:-58860125 | Msa0173540:CDS |
| GGAATCACAGCGGCAACTTC+TGG | 0.253438 | 1_4:-58861470 | Msa0173540:CDS |
| TCTAGAAGAACGGAACAAAT+AGG | 0.282502 | 1_4:-58861645 | Msa0173540:intron |
| AACAAATAGGGTACAAGAAT+TGG | 0.301512 | 1_4:-58861632 | Msa0173540:CDS |
| TTAAAATGTACCTCAGATAT+TGG | 0.304349 | 1_4:+58861876 | None:intergenic |
| ATTTGAAGGAGATTTCTTTC+GGG | 0.319999 | 1_4:+58862019 | None:intergenic |
| TAAGCATGTTGATTGAAATA+TGG | 0.322195 | 1_4:-58862076 | Msa0173540:intron |
| TGAGTTGAAGGCAAGATTAT+TGG | 0.325711 | 1_4:-58860609 | Msa0173540:CDS |
| TCCGAGTCATTGAAGATAAA+AGG | 0.327051 | 1_4:-58861550 | Msa0173540:CDS |
| AATTCGCTCATCTTCAGAAT+TGG | 0.329594 | 1_4:+58861441 | None:intergenic |
| TGGAGCTAGAGGCTGAATTA+AGG | 0.329640 | 1_4:-58860346 | Msa0173540:CDS |
| TTCTAATCTGCAATGTGCTT+TGG | 0.333283 | 1_4:+58860783 | None:intergenic |
| GAGCAAACTTCAGGAGGATT+TGG | 0.333490 | 1_4:-58860966 | Msa0173540:CDS |
| GATTTGAAGGAGATTTCTTT+CGG | 0.346603 | 1_4:+58862018 | None:intergenic |
| ATATATGTATTTAATTTGTT+AGG | 0.352600 | 1_4:-58863163 | Msa0173540:five_prime_UTR |
| GCTGCTGCTATGATTTCTTC+TGG | 0.352673 | 1_4:-58860278 | Msa0173540:CDS |
| AGAGTTAAGGGCACAATTGA+TGG | 0.353098 | 1_4:-58860666 | Msa0173540:CDS |
| TTCTCCAAGGATTGTTTGAA+TGG | 0.374694 | 1_4:+58859920 | None:intergenic |
| CTGACTCAGCATTGTCAATC+CGG | 0.380906 | 1_4:+58861254 | None:intergenic |
| AAGCCGATGTTGAAGAGTTA+AGG | 0.383364 | 1_4:-58860679 | Msa0173540:CDS |
| ATCACCATTCAAACAATCCT+TGG | 0.391881 | 1_4:-58859924 | Msa0173540:three_prime_UTR |
| TTTGTGTTGACTTGACATTT+GGG | 0.392895 | 1_4:+58861901 | None:intergenic |
| CTTTAGAGTTAGAGAAATCA+AGG | 0.395892 | 1_4:-58861018 | Msa0173540:CDS |
| TTTAATTTGTTAGGTGGTAG+TGG | 0.397615 | 1_4:-58863154 | Msa0173540:five_prime_UTR |
| GCTTTGTATTATTATATGTT+GGG | 0.405452 | 1_4:-58859961 | Msa0173540:three_prime_UTR |
| CAAATAAAACTCCAAAAGAT+AGG | 0.409278 | 1_4:-58861926 | Msa0173540:CDS |
| ACATAGTTATACAACCTTGC+AGG | 0.410084 | 1_4:+58860060 | None:intergenic |
| TGCTTTGTATTATTATATGT+TGG | 0.411246 | 1_4:-58859962 | Msa0173540:three_prime_UTR |
| TTGTTCTTCCATTTAAATCA+AGG | 0.411443 | 1_4:-58859801 | Msa0173540:three_prime_UTR |
| GGAACTTGTGAGCAAACTTC+AGG | 0.419432 | 1_4:-58860975 | Msa0173540:CDS |
| TCATCAGTTTCTTCTGCATA+AGG | 0.424746 | 1_4:+58860170 | None:intergenic |
| GAGGATTTGGTCAGTGGAGT+TGG | 0.426678 | 1_4:-58860953 | Msa0173540:CDS |
| ATCTCCTCGCTTACCTGCAT+TGG | 0.427114 | 1_4:-58860927 | Msa0173540:CDS |
| CTAGAAGAACGGAACAAATA+GGG | 0.430567 | 1_4:-58861644 | Msa0173540:intron |
| AGAACTAAGGAAAATTTCTC+AGG | 0.434914 | 1_4:-58861416 | Msa0173540:CDS |
| GTGAGCAGAAATGGTGCATC+AGG | 0.435653 | 1_4:-58862047 | Msa0173540:CDS |
| ACGACTGGAGAACACGAAAT+CGG | 0.446862 | 1_4:-58860750 | Msa0173540:CDS |
| TTGCTTCCGCTGAGGCAGCA+AGG | 0.447445 | 1_4:-58860484 | Msa0173540:CDS |
| GTGGAAACGCTCCGATTAGA+AGG | 0.448481 | 1_4:-58861073 | Msa0173540:CDS |
| ATTATATGTTGGGCGTCCTC+TGG | 0.451820 | 1_4:-58859951 | Msa0173540:three_prime_UTR |
| ATTGTCAATCCGGGTAGCTT+CGG | 0.452103 | 1_4:+58861264 | None:intergenic |
| CGAGCAGTCCGAGGATTTGA+AGG | 0.453421 | 1_4:+58862005 | None:intergenic |
| AGCCGATGTTGAAGAGTTAA+GGG | 0.459023 | 1_4:-58860678 | Msa0173540:CDS |
| TTTATCCATGTCAAGAGAGT+TGG | 0.461170 | 1_4:-58861494 | Msa0173540:CDS |
| GCTCGCAAGACGAAGTCATC+AGG | 0.465959 | 1_4:-58861987 | Msa0173540:CDS |
| GTTTCAGTTAAAGCTGAAGC+AGG | 0.470076 | 1_4:-58860860 | Msa0173540:CDS |
| TAGTACAACTCAAATGCAAT+TGG | 0.474267 | 1_4:-58861113 | Msa0173540:CDS |
| AGAATCTGAATCACAGGCAT+TGG | 0.474276 | 1_4:-58861143 | Msa0173540:CDS |
| ATCCATGTCAAGAGAGTTGG+AGG | 0.474312 | 1_4:-58861491 | Msa0173540:CDS |
| CAGTTACACGTGCTATCATT+CGG | 0.476141 | 1_4:+58860399 | None:intergenic |
| AGCAAGGGCCGCAGAGCGAG+AGG | 0.479702 | 1_4:-58860468 | Msa0173540:CDS |
| TGCTTCCGCTGAGGCAGCAA+GGG | 0.480232 | 1_4:-58860483 | Msa0173540:CDS |
| AGAGAACAATACACTTAAGA+TGG | 0.481927 | 1_4:-58860555 | Msa0173540:CDS |
| CGTGTTCTCCAGTCGTTCAA+AGG | 0.483336 | 1_4:+58860757 | None:intergenic |
| TGTTCTTCCATTTAAATCAA+GGG | 0.485276 | 1_4:-58859800 | Msa0173540:three_prime_UTR |
| TAGAAGTGCCTTTGAACGAC+TGG | 0.486503 | 1_4:-58860765 | Msa0173540:CDS |
| TTTATTTGGAGTTTCTTTGA+AGG | 0.489051 | 1_4:-58863125 | Msa0173540:five_prime_UTR |
| ACTGAAAATGCAACTTGAAA+GGG | 0.492360 | 1_4:-58861296 | Msa0173540:CDS |
| TGGTTGGCTGTGAGCAGAAA+TGG | 0.498904 | 1_4:-58862056 | Msa0173540:CDS |
| CAGACTGCCATTCTCGATCT+CGG | 0.499415 | 1_4:+58861392 | None:intergenic |
| TGCCCTTAACTCTTCAACAT+CGG | 0.502854 | 1_4:+58860676 | None:intergenic |
| AAACAAGCTCGGCTTTGAGC+CGG | 0.506146 | 1_4:+58860879 | None:intergenic |
| TTTCTCTAACTCTAAAGCTA+AGG | 0.508714 | 1_4:+58861024 | None:intergenic |
| AAGACAAGCTGAATTATATG+AGG | 0.509050 | 1_4:-58860717 | Msa0173540:CDS |
| TGCGGCCCTTGCTGCCTCAG+CGG | 0.514799 | 1_4:+58860478 | None:intergenic |
| AGCTTTAACTGAAACAAGCT+CGG | 0.514900 | 1_4:+58860868 | None:intergenic |
| TTATTTGGAGTTTCTTTGAA+GGG | 0.515755 | 1_4:-58863124 | Msa0173540:five_prime_UTR |
| TAGAAAGCGAGGAGATAAAC+CGG | 0.516380 | 1_4:-58860898 | Msa0173540:CDS |
| TAGTGATGTGGCTGAGTTGA+AGG | 0.519057 | 1_4:-58860621 | Msa0173540:CDS |
| CTCAGGACCGAGATCGAGAA+TGG | 0.519589 | 1_4:-58861399 | Msa0173540:CDS |
| CTTTCTACAACTTCCAATGC+AGG | 0.520191 | 1_4:+58860914 | None:intergenic |
| AACTGAAAATGCAACTTGAA+AGG | 0.523112 | 1_4:-58861297 | Msa0173540:CDS |
| CTTCAGGAGGATTTGGTCAG+TGG | 0.532629 | 1_4:-58860959 | Msa0173540:CDS |
| ATGAGCGAATTCAAGAACTA+AGG | 0.533335 | 1_4:-58861429 | Msa0173540:CDS |
| AGGCTGAAGATGCAAAGAAT+CGG | 0.535803 | 1_4:-58861519 | Msa0173540:CDS |
| CACGTGAATCCGAAGCTACC+CGG | 0.535832 | 1_4:-58861273 | Msa0173540:CDS |
| TATGTATTTAATTTGTTAGG+TGG | 0.535888 | 1_4:-58863160 | Msa0173540:five_prime_UTR |
| GAAGAATAAAATCACGGATG+AGG | 0.536894 | 1_4:-58860510 | Msa0173540:CDS |
| TGAAAGTTCAGTCAGATCAA+TGG | 0.538570 | 1_4:-58860319 | Msa0173540:CDS |
| GTTAAGGCAAATATTCTCCA+AGG | 0.538590 | 1_4:+58859907 | None:intergenic |
| AGAAATCTCCTTCAAATCCT+CGG | 0.539368 | 1_4:-58862013 | Msa0173540:CDS |
| CTAACTCTAAAGCTAAGGAT+TGG | 0.544112 | 1_4:+58861029 | None:intergenic |
| ATTTCTTCTGGAAACAACAA+TGG | 0.545987 | 1_4:-58860266 | Msa0173540:CDS |
| TTGTAGAGAATCTGAATCAC+AGG | 0.546987 | 1_4:-58861149 | Msa0173540:CDS |
| TTATTTGCTGGGTTTGAAGA+CGG | 0.550271 | 1_4:+58861942 | None:intergenic |
| AAGGTCTCAAGTAAACTCAC+TGG | 0.551394 | 1_4:-58860999 | Msa0173540:CDS |
| TGAGGAGTTAGATGCTGCAC+AGG | 0.555058 | 1_4:-58860378 | Msa0173540:CDS |
| TGTCCAGAAACAGCATTCAA+TGG | 0.563463 | 1_4:-58861359 | Msa0173540:CDS |
| ATCTGCATTGGATGCTGCCG+AGG | 0.566446 | 1_4:-58860828 | Msa0173540:CDS |
| TAAGATGGAAATAAAGAGAG+AGG | 0.579267 | 1_4:-58860540 | Msa0173540:CDS |
| TGACTCAGCATTGTCAATCC+GGG | 0.580031 | 1_4:+58861255 | None:intergenic |
| AGGGCAGTTAAAATCTGCAT+TGG | 0.583728 | 1_4:-58860840 | Msa0173540:CDS |
| TGAAGAAAATTGGAGTGTTG+TGG | 0.584300 | 1_4:-58860115 | Msa0173540:CDS |
| CATGTTGATTGAAATATGGT+TGG | 0.585700 | 1_4:-58862072 | Msa0173540:CDS |
| ATGCTGAGATTCAAGACTTG+AGG | 0.592935 | 1_4:-58861228 | Msa0173540:CDS |
| TTCGTCTTGCGAGCAGTCCG+AGG | 0.602923 | 1_4:+58861996 | None:intergenic |
| GTTAAAGCATTTACTCGACA+TGG | 0.603434 | 1_4:+58860006 | None:intergenic |
| GTTAGAGAAGAATAAAATCA+CGG | 0.606698 | 1_4:-58860516 | Msa0173540:CDS |
| TTCCTCCAACTCTCTTGACA+TGG | 0.607195 | 1_4:+58861489 | None:intergenic |
| GGGTACAAGAATTGGAGTCT+CGG | 0.608303 | 1_4:-58861624 | Msa0173540:CDS |
| CTTTGAAGGGATATTATATG+CGG | 0.608432 | 1_4:-58863111 | Msa0173540:intron |
| GGCGTCGAATTTGGAGCTAG+AGG | 0.618660 | 1_4:-58860357 | Msa0173540:CDS |
| GTGATTCAGATTCTCTACAA+TGG | 0.621611 | 1_4:+58861152 | None:intergenic |
| CTCGTTCTGATATCTTACCT+CGG | 0.626347 | 1_4:+58860811 | None:intergenic |
| AGAATGGCAGTCTGAACTAG+AGG | 0.628151 | 1_4:-58861383 | Msa0173540:CDS |
| ACTTGTGAGCAAACTTCAGG+AGG | 0.628772 | 1_4:-58860972 | Msa0173540:CDS |
| TTTGAAGGAGATTTCTTTCG+GGG | 0.632584 | 1_4:+58862020 | None:intergenic |
| ACTTCCAATGCAGGTAAGCG+AGG | 0.632899 | 1_4:+58860923 | None:intergenic |
| GTCTCAAGTAAACTCACTGG+AGG | 0.639006 | 1_4:-58860996 | Msa0173540:CDS |
| TGAGGCTGTTGCTTCCGCTG+AGG | 0.639415 | 1_4:-58860492 | Msa0173540:CDS |
| TGAGATTCAAGACTTGAGGA+TGG | 0.640348 | 1_4:-58861224 | Msa0173540:CDS |
| TTTCAGTTAAAGCTGAAGCA+GGG | 0.641574 | 1_4:-58860859 | Msa0173540:CDS |
| GAAGATAAAAGGTCAACATG+AGG | 0.646816 | 1_4:-58861539 | Msa0173540:CDS |
| AACACAAAGTCCAATATCTG+AGG | 0.651330 | 1_4:-58861886 | Msa0173540:intron |
| ATAGATATATGCAACCTGCA+AGG | 0.662046 | 1_4:-58860074 | Msa0173540:three_prime_UTR |
| AAGTTCAGTCAGATCAATGG+AGG | 0.671435 | 1_4:-58860316 | Msa0173540:CDS |
| AATGATAGCACGTGTAACTG+AGG | 0.673722 | 1_4:-58860396 | Msa0173540:CDS |
| ATTGGAAGTTGTAGAAAGCG+AGG | 0.674711 | 1_4:-58860909 | Msa0173540:CDS |
| TGGGTTTGAAGACGGCGAAG+CGG | 0.677416 | 1_4:+58861950 | None:intergenic |
| TTGAATGGTGATCAAACCAG+AGG | 0.679765 | 1_4:+58859935 | None:intergenic |
| GGAAGCTGCAAATAAGACAG+TGG | 0.693575 | 1_4:-58861092 | Msa0173540:CDS |
| TGTCAAAGCCTCTCGCTCTG+CGG | 0.698809 | 1_4:+58860460 | None:intergenic |
| AGAACTGGTTCACTTGACAG+TGG | 0.718014 | 1_4:-58860230 | Msa0173540:CDS |
| TCATTTGCAAGATAGTGATG+TGG | 0.731331 | 1_4:-58860633 | Msa0173540:CDS |
| GAGAGTTGGAGGAATCACAG+CGG | 0.814737 | 1_4:-58861480 | Msa0173540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAAAAAATACTAATTTTT+TGG | - | chr1_4:58859811-58859830 | Msa0173540:three_prime_UTR | 10.0% |
| !!! | ATATATGTATTTAATTTGTT+AGG | - | chr1_4:58859869-58859888 | Msa0173540:three_prime_UTR | 10.0% |
| !!! | TTCAGATTTTTTTAAAAAAA+AGG | + | chr1_4:58860411-58860430 | None:intergenic | 10.0% |
| !! | AAATTATACATTCTATTTAA+TGG | + | chr1_4:58860583-58860602 | None:intergenic | 10.0% |
| !! | AAACAATTGTAAATATTTCT+GGG | - | chr1_4:58860526-58860545 | Msa0173540:CDS | 15.0% |
| !! | TGTAAAAAAAAATGTAAAAC+AGG | + | chr1_4:58863206-58863225 | None:intergenic | 15.0% |
| !!! | TATGTATTTAATTTGTTAGG+TGG | - | chr1_4:58859872-58859891 | Msa0173540:three_prime_UTR | 20.0% |
| !! | AATATCTAGGTGATAAAAAA+GGG | + | chr1_4:58860222-58860241 | None:intergenic | 20.0% |
| !! | TAATATCTAGGTGATAAAAA+AGG | + | chr1_4:58860223-58860242 | None:intergenic | 20.0% |
| !! | TGGTTGTACTATAATTTATA+AGG | - | chr1_4:58860379-58860398 | Msa0173540:CDS | 20.0% |
| !! | CAAACAATTGTAAATATTTC+TGG | - | chr1_4:58860525-58860544 | Msa0173540:CDS | 20.0% |
| !!! | ATTATTTCTTCAGATTTCTT+TGG | + | chr1_4:58860621-58860640 | None:intergenic | 20.0% |
| !!! | TTTTCTTATAAGTAGTGAAT+AGG | + | chr1_4:58860678-58860697 | None:intergenic | 20.0% |
| !! | TCCTGTTTATGAAAAATATT+TGG | - | chr1_4:58860730-58860749 | Msa0173540:CDS | 20.0% |
| !! | AAACAACAATGGAAAAATTA+TGG | - | chr1_4:58862777-58862796 | Msa0173540:intron | 20.0% |
| !!! | ATTGTTGTATTTTTCTTCTT+AGG | + | chr1_4:58862895-58862914 | None:intergenic | 20.0% |
| !! | TGCTTTGTATTATTATATGT+TGG | - | chr1_4:58863070-58863089 | Msa0173540:intron | 20.0% |
| !! | GCTTTGTATTATTATATGTT+GGG | - | chr1_4:58863071-58863090 | Msa0173540:intron | 20.0% |
| !! | TTTATTTGGAGTTTCTTTGA+AGG | - | chr1_4:58859907-58859926 | Msa0173540:three_prime_UTR | 25.0% |
| !! | TTATTTGGAGTTTCTTTGAA+GGG | - | chr1_4:58859908-58859927 | Msa0173540:three_prime_UTR | 25.0% |
| ! | ATTAGATTATATGACCACAT+TGG | + | chr1_4:58859974-58859993 | None:intergenic | 25.0% |
| ! | TATATAATTTGACTGAAGAC+AGG | + | chr1_4:58860314-58860333 | None:intergenic | 25.0% |
| ! | TGTCTTCAGTCAAATTATAT+AGG | - | chr1_4:58860313-58860332 | Msa0173540:CDS | 25.0% |
| ! | GTCTTCAGTCAAATTATATA+GGG | - | chr1_4:58860314-58860333 | Msa0173540:CDS | 25.0% |
| ! | AATTATATAGGGTCTAAATG+AGG | - | chr1_4:58860325-58860344 | Msa0173540:CDS | 25.0% |
| ! | ATTATATAGGGTCTAAATGA+GGG | - | chr1_4:58860326-58860345 | Msa0173540:CDS | 25.0% |
| !!! | TTGCTCTTATTTTATTCAGT+AGG | - | chr1_4:58860354-58860373 | Msa0173540:CDS | 25.0% |
| !!! | CTTATTTTATTCAGTAGGTT+TGG | - | chr1_4:58860359-58860378 | Msa0173540:CDS | 25.0% |
| ! | TCAATTCCATGAATACAAAT+AGG | + | chr1_4:58860446-58860465 | None:intergenic | 25.0% |
| ! | TCACTACTTATAAGAAAACT+AGG | - | chr1_4:58860680-58860699 | Msa0173540:CDS | 25.0% |
| !! | GCCAAATATTTTTCATAAAC+AGG | + | chr1_4:58860734-58860753 | None:intergenic | 25.0% |
| !! | AATATTGTCGTTTCATAGAA+GGG | + | chr1_4:58860767-58860786 | None:intergenic | 25.0% |
| !! | AAATATTGTCGTTTCATAGA+AGG | + | chr1_4:58860768-58860787 | None:intergenic | 25.0% |
| !! | TCTATGAAACGACAATATTT+TGG | - | chr1_4:58860768-58860787 | Msa0173540:CDS | 25.0% |
| !! | CTATGAAACGACAATATTTT+GGG | - | chr1_4:58860769-58860788 | Msa0173540:CDS | 25.0% |
| ! | TGCAAATTTCTTGAATAGAA+TGG | + | chr1_4:58860845-58860864 | None:intergenic | 25.0% |
| ! | AATTTACACATATCACAATG+AGG | + | chr1_4:58860905-58860924 | None:intergenic | 25.0% |
| !! | TAAGCATGTTGATTGAAATA+TGG | - | chr1_4:58860956-58860975 | Msa0173540:CDS | 25.0% |
| ! | CAAATAAAACTCCAAAAGAT+AGG | - | chr1_4:58861106-58861125 | Msa0173540:CDS | 25.0% |
| ! | TTAAAATGTACCTCAGATAT+TGG | + | chr1_4:58861159-58861178 | None:intergenic | 25.0% |
| ! | GAAATTACCAATAATCACAA+TGG | + | chr1_4:58861207-58861226 | None:intergenic | 25.0% |
| !! | TGTGATTATTGGTAATTTCA+TGG | - | chr1_4:58861208-58861227 | Msa0173540:CDS | 25.0% |
| ! | GGAATAAATAACTAGATACT+TGG | - | chr1_4:58861238-58861257 | Msa0173540:CDS | 25.0% |
| ! | AATTGCAAAGATGAAAAATG+AGG | - | chr1_4:58861853-58861872 | Msa0173540:intron | 25.0% |
| ! | GTTAGAGAAGAATAAAATCA+CGG | - | chr1_4:58862516-58862535 | Msa0173540:intron | 25.0% |
| ! | ACAACAATGTTGAAGAAAAT+TGG | - | chr1_4:58862907-58862926 | Msa0173540:intron | 25.0% |
| !! | TTTGTGACACTATTTTGTTA+AGG | + | chr1_4:58863144-58863163 | None:intergenic | 25.0% |
| ! | TTGTTCTTCCATTTAAATCA+AGG | - | chr1_4:58863231-58863250 | Msa0173540:five_prime_UTR | 25.0% |
| ! | TGTTCTTCCATTTAAATCAA+GGG | - | chr1_4:58863232-58863251 | Msa0173540:five_prime_UTR | 25.0% |
| !! | GTTATTTCCCTTGATTTAAA+TGG | + | chr1_4:58863242-58863261 | None:intergenic | 25.0% |
| !! | TTTAATTTGTTAGGTGGTAG+TGG | - | chr1_4:58859878-58859897 | Msa0173540:three_prime_UTR | 30.0% |
| ! | CTTTGAAGGGATATTATATG+CGG | - | chr1_4:58859921-58859940 | Msa0173540:three_prime_UTR | 30.0% |
| ! | TGTTTGTTGAACTTGAATCA+AGG | - | chr1_4:58859946-58859965 | Msa0173540:three_prime_UTR | 30.0% |
| ATTGATATTGCAGGAATTGT+GGG | - | chr1_4:58860164-58860183 | Msa0173540:CDS | 30.0% | |
| TGTCTGCATGTTTAATATCT+AGG | + | chr1_4:58860235-58860254 | None:intergenic | 30.0% | |
| ! | ATGCTGCAAAAGTATGAAAT+AGG | + | chr1_4:58860279-58860298 | None:intergenic | 30.0% |
| TTTGAGCCTATTTGTATTCA+TGG | - | chr1_4:58860437-58860456 | Msa0173540:CDS | 30.0% | |
| ACTCCTTGTAAGTCATATTT+CGG | - | chr1_4:58860478-58860497 | Msa0173540:CDS | 30.0% | |
| TTACCGAAATATGACTTACA+AGG | + | chr1_4:58860484-58860503 | None:intergenic | 30.0% | |
| !! | ATATTTCTGGGATCTAATTG+AGG | - | chr1_4:58860538-58860557 | Msa0173540:CDS | 30.0% |
| ! | CATTCTATTTAATGGACCAA+AGG | + | chr1_4:58860575-58860594 | None:intergenic | 30.0% |
| TTACCACAATATGATTCATC+AGG | + | chr1_4:58860649-58860668 | None:intergenic | 30.0% | |
| !! | GGATTGTCTTGTTTCTTTAT+TGG | - | chr1_4:58860794-58860813 | Msa0173540:CDS | 30.0% |
| ATCTACACAAGAAGAGTTAT+AGG | + | chr1_4:58860821-58860840 | None:intergenic | 30.0% | |
| ! | CATGTTGATTGAAATATGGT+TGG | - | chr1_4:58860960-58860979 | Msa0173540:CDS | 30.0% |
| ATTTGAAGGAGATTTCTTTC+GGG | + | chr1_4:58861016-58861035 | None:intergenic | 30.0% | |
| GATTTGAAGGAGATTTCTTT+CGG | + | chr1_4:58861017-58861036 | None:intergenic | 30.0% | |
| !!! | CTTTTGGAGTTTTATTTGCT+GGG | + | chr1_4:58861104-58861123 | None:intergenic | 30.0% |
| !!! | TCTTTTGGAGTTTTATTTGC+TGG | + | chr1_4:58861105-58861124 | None:intergenic | 30.0% |
| !! | TTTGTGTTGACTTGACATTT+GGG | + | chr1_4:58861134-58861153 | None:intergenic | 30.0% |
| TAGAGGCAATATATTCATGA+AGG | + | chr1_4:58861279-58861298 | None:intergenic | 30.0% | |
| !! | TTAGATTTTGCTATGCATAG+AGG | + | chr1_4:58861296-58861315 | None:intergenic | 30.0% |
| AACAAATAGGGTACAAGAAT+TGG | - | chr1_4:58861400-58861419 | Msa0173540:CDS | 30.0% | |
| ! | ACCTTTTATCTTCAATGACT+CGG | + | chr1_4:58861486-58861505 | None:intergenic | 30.0% |
| AGAACTAAGGAAAATTTCTC+AGG | - | chr1_4:58861616-58861635 | Msa0173540:CDS | 30.0% | |
| AACTGAAAATGCAACTTGAA+AGG | - | chr1_4:58861735-58861754 | Msa0173540:intron | 30.0% | |
| ACTGAAAATGCAACTTGAAA+GGG | - | chr1_4:58861736-58861755 | Msa0173540:intron | 30.0% | |
| TAGTACAACTCAAATGCAAT+TGG | - | chr1_4:58861919-58861938 | Msa0173540:CDS | 30.0% | |
| !! | TTTCTCTAACTCTAAAGCTA+AGG | + | chr1_4:58862011-58862030 | None:intergenic | 30.0% |
| !! | CTTTAGAGTTAGAGAAATCA+AGG | - | chr1_4:58862014-58862033 | Msa0173540:CDS | 30.0% |
| AAGACAAGCTGAATTATATG+AGG | - | chr1_4:58862315-58862334 | Msa0173540:intron | 30.0% | |
| AGAGAACAATACACTTAAGA+TGG | - | chr1_4:58862477-58862496 | Msa0173540:intron | 30.0% | |
| TAAGATGGAAATAAAGAGAG+AGG | - | chr1_4:58862492-58862511 | Msa0173540:intron | 30.0% | |
| ! | ATTTCTTCTGGAAACAACAA+TGG | - | chr1_4:58862766-58862785 | Msa0173540:intron | 30.0% |
| GGCTACAACAATTCTATTAT+TGG | - | chr1_4:58862823-58862842 | Msa0173540:intron | 30.0% | |
| !!! | TACATTGTTTTGATCGCATT+TGG | - | chr1_4:58863175-58863194 | Msa0173540:five_prime_UTR | 30.0% |
| !! | GGTAGTGGAGTTAGTTTATT+TGG | - | chr1_4:58859893-58859912 | Msa0173540:three_prime_UTR | 35.0% |
| ! | CTTTTGCAGATTGATATTGC+AGG | - | chr1_4:58860155-58860174 | Msa0173540:CDS | 35.0% |
| GATTGATATTGCAGGAATTG+TGG | - | chr1_4:58860163-58860182 | Msa0173540:CDS | 35.0% | |
| TCTAGGTGATAAAAAAGGGA+AGG | + | chr1_4:58860218-58860237 | None:intergenic | 35.0% | |
| TGTCCTGATGAATCATATTG+TGG | - | chr1_4:58860643-58860662 | Msa0173540:CDS | 35.0% | |
| !! | GAAACGACAATATTTTGGGA+AGG | - | chr1_4:58860773-58860792 | Msa0173540:CDS | 35.0% |
| TTTGAAGGAGATTTCTTTCG+GGG | + | chr1_4:58861015-58861034 | None:intergenic | 35.0% | |
| AGAAATCTCCTTCAAATCCT+CGG | - | chr1_4:58861019-58861038 | Msa0173540:CDS | 35.0% | |
| ! | TTATTTGCTGGGTTTGAAGA+CGG | + | chr1_4:58861093-58861112 | None:intergenic | 35.0% |
| !! | CTTTGTGTTGACTTGACATT+TGG | + | chr1_4:58861135-58861154 | None:intergenic | 35.0% |
| AACACAAAGTCCAATATCTG+AGG | - | chr1_4:58861146-58861165 | Msa0173540:CDS | 35.0% | |
| GTTCCTATAAGACTTACCTT+TGG | - | chr1_4:58861179-58861198 | Msa0173540:CDS | 35.0% | |
| AATAATCACAATGGCACCAA+AGG | + | chr1_4:58861198-58861217 | None:intergenic | 35.0% | |
| !! | TTTGGTGCCATTGTGATTAT+TGG | - | chr1_4:58861197-58861216 | Msa0173540:CDS | 35.0% |
| TGGTAATTTCATGGATGCAT+TGG | - | chr1_4:58861217-58861236 | Msa0173540:CDS | 35.0% | |
| AGAGGTAGACAAAAATGTCA+AGG | + | chr1_4:58861370-58861389 | None:intergenic | 35.0% | |
| ! | TTTGTCTACCTCTAGAAGAA+CGG | - | chr1_4:58861377-58861396 | Msa0173540:CDS | 35.0% |
| TATTTGTTCCGTTCTTCTAG+AGG | + | chr1_4:58861388-58861407 | None:intergenic | 35.0% | |
| TCTAGAAGAACGGAACAAAT+AGG | - | chr1_4:58861387-58861406 | Msa0173540:CDS | 35.0% | |
| CTAGAAGAACGGAACAAATA+GGG | - | chr1_4:58861388-58861407 | Msa0173540:CDS | 35.0% | |
| TCCGAGTCATTGAAGATAAA+AGG | - | chr1_4:58861482-58861501 | Msa0173540:CDS | 35.0% | |
| GAAGATAAAAGGTCAACATG+AGG | - | chr1_4:58861493-58861512 | Msa0173540:CDS | 35.0% | |
| TTTATCCATGTCAAGAGAGT+TGG | - | chr1_4:58861538-58861557 | Msa0173540:CDS | 35.0% | |
| AATTCGCTCATCTTCAGAAT+TGG | + | chr1_4:58861594-58861613 | None:intergenic | 35.0% | |
| ATGAGCGAATTCAAGAACTA+AGG | - | chr1_4:58861603-58861622 | Msa0173540:CDS | 35.0% | |
| ! | CAAGTTGCATTTTCAGTTTC+TGG | + | chr1_4:58861733-58861752 | None:intergenic | 35.0% |
| GTGATTCAGATTCTCTACAA+TGG | + | chr1_4:58861883-58861902 | None:intergenic | 35.0% | |
| TTGTAGAGAATCTGAATCAC+AGG | - | chr1_4:58861883-58861902 | Msa0173540:intron | 35.0% | |
| !! | CTAACTCTAAAGCTAAGGAT+TGG | + | chr1_4:58862006-58862025 | None:intergenic | 35.0% |
| ! | AGCTTTAACTGAAACAAGCT+CGG | + | chr1_4:58862167-58862186 | None:intergenic | 35.0% |
| TTTCAGTTAAAGCTGAAGCA+GGG | - | chr1_4:58862173-58862192 | Msa0173540:intron | 35.0% | |
| TTCTAATCTGCAATGTGCTT+TGG | + | chr1_4:58862252-58862271 | None:intergenic | 35.0% | |
| TCATTTGCAAGATAGTGATG+TGG | - | chr1_4:58862399-58862418 | Msa0173540:intron | 35.0% | |
| ! | TGAGTTGAAGGCAAGATTAT+TGG | - | chr1_4:58862423-58862442 | Msa0173540:intron | 35.0% |
| GAAGAATAAAATCACGGATG+AGG | - | chr1_4:58862522-58862541 | Msa0173540:intron | 35.0% | |
| TGAAAGTTCAGTCAGATCAA+TGG | - | chr1_4:58862713-58862732 | Msa0173540:intron | 35.0% | |
| GGAAAAATTATGGAGAGAAC+TGG | - | chr1_4:58862787-58862806 | Msa0173540:intron | 35.0% | |
| TCATCAGTTTCTTCTGCATA+AGG | + | chr1_4:58862865-58862884 | None:intergenic | 35.0% | |
| !! | TGAAGAAAATTGGAGTGTTG+TGG | - | chr1_4:58862917-58862936 | Msa0173540:intron | 35.0% |
| ATAGATATATGCAACCTGCA+AGG | - | chr1_4:58862958-58862977 | Msa0173540:intron | 35.0% | |
| ACATAGTTATACAACCTTGC+AGG | + | chr1_4:58862975-58862994 | None:intergenic | 35.0% | |
| ! | GTTAAAGCATTTACTCGACA+TGG | + | chr1_4:58863029-58863048 | None:intergenic | 35.0% |
| ATCACCATTCAAACAATCCT+TGG | - | chr1_4:58863108-58863127 | Msa0173540:intron | 35.0% | |
| TTCTCCAAGGATTGTTTGAA+TGG | + | chr1_4:58863115-58863134 | None:intergenic | 35.0% | |
| GTTAAGGCAAATATTCTCCA+AGG | + | chr1_4:58863128-58863147 | None:intergenic | 35.0% | |
| CTTGAATCAAGGATCCAATG+TGG | - | chr1_4:58859957-58859976 | Msa0173540:three_prime_UTR | 40.0% | |
| ACATGCAGACACAAAAAGCA+AGG | - | chr1_4:58860244-58860263 | Msa0173540:CDS | 40.0% | |
| CAGACACAAAAAGCAAGGTA+AGG | - | chr1_4:58860249-58860268 | Msa0173540:CDS | 40.0% | |
| TGAGGTATGAATGCTACCTT+TGG | - | chr1_4:58860556-58860575 | Msa0173540:CDS | 40.0% | |
| ACTAGGCTTCTATGCATCAA+TGG | - | chr1_4:58860697-58860716 | Msa0173540:CDS | 40.0% | |
| ! | ACATTTGGGCTCCTATCTTT+TGG | + | chr1_4:58861120-58861139 | None:intergenic | 40.0% |
| ! | GCACCAAAGGTAAGTCTTAT+AGG | + | chr1_4:58861185-58861204 | None:intergenic | 40.0% |
| AGGCTGAAGATGCAAAGAAT+CGG | - | chr1_4:58861513-58861532 | Msa0173540:CDS | 40.0% | |
| TGTCCAGAAACAGCATTCAA+TGG | - | chr1_4:58861673-58861692 | Msa0173540:intron | 40.0% | |
| !! | AGTCCATTGAATGCTGTTTC+TGG | + | chr1_4:58861679-58861698 | None:intergenic | 40.0% |
| ATGCTGAGATTCAAGACTTG+AGG | - | chr1_4:58861804-58861823 | Msa0173540:intron | 40.0% | |
| TGAGATTCAAGACTTGAGGA+TGG | - | chr1_4:58861808-58861827 | Msa0173540:intron | 40.0% | |
| AGAATCTGAATCACAGGCAT+TGG | - | chr1_4:58861889-58861908 | Msa0173540:CDS | 40.0% | |
| ! | ACGCTTTTGCACCTTCTAAT+CGG | + | chr1_4:58861973-58861992 | None:intergenic | 40.0% |
| AAGGTCTCAAGTAAACTCAC+TGG | - | chr1_4:58862033-58862052 | Msa0173540:CDS | 40.0% | |
| CTTTCTACAACTTCCAATGC+AGG | + | chr1_4:58862121-58862140 | None:intergenic | 40.0% | |
| ATTGGAAGTTGTAGAAAGCG+AGG | - | chr1_4:58862123-58862142 | Msa0173540:intron | 40.0% | |
| TAGAAAGCGAGGAGATAAAC+CGG | - | chr1_4:58862134-58862153 | Msa0173540:intron | 40.0% | |
| GTTTCAGTTAAAGCTGAAGC+AGG | - | chr1_4:58862172-58862191 | Msa0173540:intron | 40.0% | |
| AGGGCAGTTAAAATCTGCAT+TGG | - | chr1_4:58862192-58862211 | Msa0173540:intron | 40.0% | |
| CTCGTTCTGATATCTTACCT+CGG | + | chr1_4:58862224-58862243 | None:intergenic | 40.0% | |
| AAGCCGATGTTGAAGAGTTA+AGG | - | chr1_4:58862353-58862372 | Msa0173540:intron | 40.0% | |
| AGCCGATGTTGAAGAGTTAA+GGG | - | chr1_4:58862354-58862373 | Msa0173540:intron | 40.0% | |
| TGCCCTTAACTCTTCAACAT+CGG | + | chr1_4:58862359-58862378 | None:intergenic | 40.0% | |
| ! | AGAGTTAAGGGCACAATTGA+TGG | - | chr1_4:58862366-58862385 | Msa0173540:intron | 40.0% |
| CAGTTACACGTGCTATCATT+CGG | + | chr1_4:58862636-58862655 | None:intergenic | 40.0% | |
| AATGATAGCACGTGTAACTG+AGG | - | chr1_4:58862636-58862655 | Msa0173540:intron | 40.0% | |
| AAGTTCAGTCAGATCAATGG+AGG | - | chr1_4:58862716-58862735 | Msa0173540:intron | 40.0% | |
| TTGAATGGTGATCAAACCAG+AGG | + | chr1_4:58863100-58863119 | None:intergenic | 40.0% | |
| TATTGCAGGAATTGTGGGTC+AGG | - | chr1_4:58860169-58860188 | Msa0173540:CDS | 45.0% | |
| ATTGCAGGAATTGTGGGTCA+GGG | - | chr1_4:58860170-58860189 | Msa0173540:CDS | 45.0% | |
| GGGTACAAGAATTGGAGTCT+CGG | - | chr1_4:58861408-58861427 | Msa0173540:CDS | 45.0% | |
| ATCCATGTCAAGAGAGTTGG+AGG | - | chr1_4:58861541-58861560 | Msa0173540:CDS | 45.0% | |
| TTCCTCCAACTCTCTTGACA+TGG | + | chr1_4:58861546-58861565 | None:intergenic | 45.0% | |
| AGAATGGCAGTCTGAACTAG+AGG | - | chr1_4:58861649-58861668 | Msa0173540:intron | 45.0% | |
| ATTGTCAATCCGGGTAGCTT+CGG | + | chr1_4:58861771-58861790 | None:intergenic | 45.0% | |
| TGACTCAGCATTGTCAATCC+GGG | + | chr1_4:58861780-58861799 | None:intergenic | 45.0% | |
| CTGACTCAGCATTGTCAATC+CGG | + | chr1_4:58861781-58861800 | None:intergenic | 45.0% | |
| GGAAGCTGCAAATAAGACAG+TGG | - | chr1_4:58861940-58861959 | Msa0173540:CDS | 45.0% | |
| GTCTCAAGTAAACTCACTGG+AGG | - | chr1_4:58862036-58862055 | Msa0173540:CDS | 45.0% | |
| GGAACTTGTGAGCAAACTTC+AGG | - | chr1_4:58862057-58862076 | Msa0173540:CDS | 45.0% | |
| ACTTGTGAGCAAACTTCAGG+AGG | - | chr1_4:58862060-58862079 | Msa0173540:CDS | 45.0% | |
| GAGCAAACTTCAGGAGGATT+TGG | - | chr1_4:58862066-58862085 | Msa0173540:CDS | 45.0% | |
| !! | TAGAAGTGCCTTTGAACGAC+TGG | - | chr1_4:58862267-58862286 | Msa0173540:intron | 45.0% |
| ACGACTGGAGAACACGAAAT+CGG | - | chr1_4:58862282-58862301 | Msa0173540:intron | 45.0% | |
| ! | TAGTGATGTGGCTGAGTTGA+AGG | - | chr1_4:58862411-58862430 | Msa0173540:intron | 45.0% |
| TGGAGCTAGAGGCTGAATTA+AGG | - | chr1_4:58862686-58862705 | Msa0173540:intron | 45.0% | |
| GCTGCTGCTATGATTTCTTC+TGG | - | chr1_4:58862754-58862773 | Msa0173540:intron | 45.0% | |
| ! | AGAACTGGTTCACTTGACAG+TGG | - | chr1_4:58862802-58862821 | Msa0173540:intron | 45.0% |
| ATTATATGTTGGGCGTCCTC+TGG | - | chr1_4:58863081-58863100 | Msa0173540:intron | 45.0% | |
| TTGCAGGAATTGTGGGTCAG+GGG | - | chr1_4:58860171-58860190 | Msa0173540:CDS | 50.0% | |
| ! | TGGTTGGCTGTGAGCAGAAA+TGG | - | chr1_4:58860976-58860995 | Msa0173540:CDS | 50.0% |
| GTGAGCAGAAATGGTGCATC+AGG | - | chr1_4:58860985-58861004 | Msa0173540:CDS | 50.0% | |
| GAGAGTTGGAGGAATCACAG+CGG | - | chr1_4:58861552-58861571 | Msa0173540:CDS | 50.0% | |
| CAGACTGCCATTCTCGATCT+CGG | + | chr1_4:58861643-58861662 | None:intergenic | 50.0% | |
| GTGGAAACGCTCCGATTAGA+AGG | - | chr1_4:58861959-58861978 | Msa0173540:CDS | 50.0% | |
| ! | CTTCAGGAGGATTTGGTCAG+TGG | - | chr1_4:58862073-58862092 | Msa0173540:CDS | 50.0% |
| ! | GAGGATTTGGTCAGTGGAGT+TGG | - | chr1_4:58862079-58862098 | Msa0173540:intron | 50.0% |
| ATCTCCTCGCTTACCTGCAT+TGG | - | chr1_4:58862105-58862124 | Msa0173540:intron | 50.0% | |
| ACTTCCAATGCAGGTAAGCG+AGG | + | chr1_4:58862112-58862131 | None:intergenic | 50.0% | |
| !! | AAACAAGCTCGGCTTTGAGC+CGG | + | chr1_4:58862156-58862175 | None:intergenic | 50.0% |
| CGTGTTCTCCAGTCGTTCAA+AGG | + | chr1_4:58862278-58862297 | None:intergenic | 50.0% | |
| TGAGGAGTTAGATGCTGCAC+AGG | - | chr1_4:58862654-58862673 | Msa0173540:intron | 50.0% | |
| CGAGCAGTCCGAGGATTTGA+AGG | + | chr1_4:58861030-58861049 | None:intergenic | 55.0% | |
| GCTCGCAAGACGAAGTCATC+AGG | - | chr1_4:58861045-58861064 | Msa0173540:CDS | 55.0% | |
| TGGGTTTGAAGACGGCGAAG+CGG | + | chr1_4:58861085-58861104 | None:intergenic | 55.0% | |
| GGAATCACAGCGGCAACTTC+TGG | - | chr1_4:58861562-58861581 | Msa0173540:CDS | 55.0% | |
| CTCAGGACCGAGATCGAGAA+TGG | - | chr1_4:58861633-58861652 | Msa0173540:CDS | 55.0% | |
| CACGTGAATCCGAAGCTACC+CGG | - | chr1_4:58861759-58861778 | Msa0173540:intron | 55.0% | |
| ATCTGCATTGGATGCTGCCG+AGG | - | chr1_4:58862204-58862223 | Msa0173540:intron | 55.0% | |
| TGTCAAAGCCTCTCGCTCTG+CGG | + | chr1_4:58862575-58862594 | None:intergenic | 55.0% | |
| !! | TGCTGCACAGGCGTCGAATT+TGG | - | chr1_4:58862666-58862685 | Msa0173540:intron | 55.0% |
| ! | GGCGTCGAATTTGGAGCTAG+AGG | - | chr1_4:58862675-58862694 | Msa0173540:intron | 55.0% |
| TTCGTCTTGCGAGCAGTCCG+AGG | + | chr1_4:58861039-58861058 | None:intergenic | 60.0% | |
| ! | TGAGGCTGTTGCTTCCGCTG+AGG | - | chr1_4:58862540-58862559 | Msa0173540:intron | 60.0% |
| TTGCTTCCGCTGAGGCAGCA+AGG | - | chr1_4:58862548-58862567 | Msa0173540:intron | 60.0% | |
| TGCTTCCGCTGAGGCAGCAA+GGG | - | chr1_4:58862549-58862568 | Msa0173540:intron | 60.0% | |
| TGCGGCCCTTGCTGCCTCAG+CGG | + | chr1_4:58862557-58862576 | None:intergenic | 70.0% | |
| AGCAAGGGCCGCAGAGCGAG+AGG | - | chr1_4:58862564-58862583 | Msa0173540:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58859784 | 58863270 | 58859784 | ID=Msa0173540;Name=Msa0173540 |
| chr1_4 | mRNA | 58859784 | 58863270 | 58859784 | ID=Msa0173540-mRNA-1;Parent=Msa0173540;Name=Msa0173540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=154|0|0.33|1|0|0|3|313|591 |
| chr1_4 | exon | 58859784 | 58861659 | 58859784 | ID=Msa0173540-mRNA-1:exon:18323;Parent=Msa0173540-mRNA-1 |
| chr1_4 | exon | 58861887 | 58862094 | 58861887 | ID=Msa0173540-mRNA-1:exon:18322;Parent=Msa0173540-mRNA-1 |
| chr1_4 | exon | 58863112 | 58863270 | 58863112 | ID=Msa0173540-mRNA-1:exon:18321;Parent=Msa0173540-mRNA-1 |
| chr1_4 | five_prime_UTR | 58863117 | 58863270 | 58863117 | ID=Msa0173540-mRNA-1:five_prime_utr;Parent=Msa0173540-mRNA-1 |
| chr1_4 | CDS | 58863112 | 58863116 | 58863112 | ID=Msa0173540-mRNA-1:cds;Parent=Msa0173540-mRNA-1 |
| chr1_4 | CDS | 58861887 | 58862094 | 58861887 | ID=Msa0173540-mRNA-1:cds;Parent=Msa0173540-mRNA-1 |
| chr1_4 | CDS | 58860097 | 58861659 | 58860097 | ID=Msa0173540-mRNA-1:cds;Parent=Msa0173540-mRNA-1 |
| chr1_4 | three_prime_UTR | 58859784 | 58860096 | 58859784 | ID=Msa0173540-mRNA-1:three_prime_utr;Parent=Msa0173540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
