AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0178540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178540 MtrunA17_Chr1g0208271 97.586 580 13 1 1 580 1 579 0.0 1170
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178540 AT1G71040.1 67.012 579 185 2 1 579 8 580 0.0 818
Msa0178540 AT1G23010.1 64.716 581 202 2 1 579 1 580 0.0 806

Find 171 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCAGGGTGTTGATTATT+TGG 0.126666 1_4:+65889506 None:intergenic
AACCTTCTAGCTGGCTTAAT+TGG 0.137213 1_4:-65889443 Msa0178540:CDS
TTTGGGTTTGTTTAAGGTTT+TGG 0.157715 1_4:-65888652 Msa0178540:CDS
TATTCATTTGGGTTTGTTTA+AGG 0.162430 1_4:-65888658 Msa0178540:CDS
GGTGAAATCTGATGAATTTA+AGG 0.174317 1_4:-65888616 Msa0178540:CDS
GCATCTGATTCTGCTTATAT+TGG 0.236168 1_4:-65889104 Msa0178540:CDS
AGTAATATAAAGAGAGAAAA+AGG 0.240570 1_4:+65892481 None:intergenic
GAACTTGTATTGTAGGAAAA+TGG 0.248707 1_4:-65888082 Msa0178540:intron
CCATAGACTTTGGGCATATT+AGG 0.248841 1_4:+65892285 None:intergenic
TTTGGATTTCCATCGCTTTC+GGG 0.251781 1_4:+65889593 None:intergenic
ATCAACACCCTGGAAATTTA+TGG 0.253088 1_4:-65889499 Msa0178540:CDS
GTTTGGATTTCCATCGCTTT+CGG 0.285243 1_4:+65889592 None:intergenic
TGTTGGGGATTTAGTAAGTT+TGG 0.287261 1_4:-65887560 Msa0178540:three_prime_UTR
CAGTGGCAACCAGAATATTT+TGG 0.298569 1_4:-65889266 Msa0178540:CDS
GGGAATACCATTGGTTGTTT+TGG 0.306936 1_4:+65889649 None:intergenic
TTCCACCCTTTCTCATAATC+AGG 0.308245 1_4:+65888519 None:intergenic
TCACCCACTTCATATTCATT+TGG 0.316177 1_4:-65888670 Msa0178540:CDS
ATTGCGTCACCAAAATATTC+TGG 0.317816 1_4:+65889257 None:intergenic
CCATTGAGGGCTTCGATTGT+TGG 0.320385 1_4:+65889755 None:intergenic
CCTAATATGCCCAAAGTCTA+TGG 0.326346 1_4:-65892285 Msa0178540:CDS
TTATCATTGTTGACTCTCAT+TGG 0.342861 1_4:+65888220 None:intergenic
TTTGGGTTCTTGTAATATAG+TGG 0.343682 1_4:-65887847 Msa0178540:three_prime_UTR
CTCAAATCCACCTTACAATA+AGG 0.347432 1_4:-65892454 Msa0178540:five_prime_UTR
CACCCACTTCATATTCATTT+GGG 0.348020 1_4:-65888669 Msa0178540:CDS
ATCTTGAGAGACTTTGATTT+GGG 0.361911 1_4:+65892240 None:intergenic
TTGGCATGTTCAAGAAGAAA+TGG 0.363926 1_4:-65892218 Msa0178540:CDS
AATCTTGAGAGACTTTGATT+TGG 0.364281 1_4:+65892239 None:intergenic
ACCTTGTAGCCATAGACTTT+GGG 0.371381 1_4:+65892276 None:intergenic
TAAAGCTTGGCCACGTTTAA+CGG 0.379971 1_4:-65889222 Msa0178540:CDS
CATCTGATTCTGCTTATATT+GGG 0.380154 1_4:-65889103 Msa0178540:CDS
GTCAATGAAGTGGGGATAGT+TGG 0.385690 1_4:+65889671 None:intergenic
TTACCACTAGTTTCATCAAC+TGG 0.391577 1_4:+65888948 None:intergenic
ACCTTCTAGCTGGCTTAATT+GGG 0.392286 1_4:-65889442 Msa0178540:CDS
TCATGATACCATAAATTTCC+AGG 0.392964 1_4:+65889491 None:intergenic
GTTTAATCCGTATGCGTAAA+CGG 0.393400 1_4:+65889802 None:intergenic
ACTTTCGCAATTTCTGTAAC+CGG 0.395052 1_4:+65888738 None:intergenic
AACCTTGTAGCCATAGACTT+TGG 0.396598 1_4:+65892275 None:intergenic
TCCCATGGGAGTATGTGATT+TGG 0.396819 1_4:+65889695 None:intergenic
TCATCATAGCATTATCTTCA+TGG 0.397950 1_4:+65888273 None:intergenic
AGAGTTTCATTACTCACAAC+TGG 0.408146 1_4:+65889077 None:intergenic
TTGTTACAAAGATTGTTGTT+AGG 0.409385 1_4:-65888470 Msa0178540:CDS
AAACACAAAGCAACAATTCC+TGG 0.410216 1_4:-65889779 Msa0178540:CDS
TCTGTAACCGGTGCTTCATA+AGG 0.422607 1_4:+65888750 None:intergenic
AGTTGACACGTCACGGATAC+CGG 0.424090 1_4:-65888892 Msa0178540:CDS
CTATGAGAATTGATATTGCT+TGG 0.425110 1_4:-65887803 Msa0178540:three_prime_UTR
CACCGCTGGATTCAAAATCA+AGG 0.425944 1_4:-65889561 Msa0178540:CDS
CAGTGAGAACTCAAAACAAT+AGG 0.426583 1_4:+65892513 None:intergenic
GTGGGGATAGTTGGGTCCCA+TGG 0.428785 1_4:+65889680 None:intergenic
AGAGTCAACAATGATAATAT+AGG 0.429928 1_4:-65888214 Msa0178540:intron
GCTTCACTTGATCATCTTCA+AGG 0.430685 1_4:+65888247 None:intergenic
AAGGTTCCTGATTATGAGAA+AGG 0.437090 1_4:-65888525 Msa0178540:CDS
TATGGCTACAAGGTTGTAGA+TGG 0.446660 1_4:-65892267 Msa0178540:CDS
TCCATCGCTACCTTATTGTA+AGG 0.446787 1_4:+65892444 None:intergenic
GGTGACGCAATCATTGTAAA+CGG 0.446969 1_4:-65889245 Msa0178540:CDS
TTTAGTGGTGATTCGATTGA+AGG 0.452301 1_4:+65889401 None:intergenic
CCAACGACCGTTTACGCATA+CGG 0.458246 1_4:-65889809 Msa0178540:CDS
TTTGATGCAACTAAGGAGTC+TGG 0.460440 1_4:-65888414 Msa0178540:CDS
TGTATTCAACGATTCTGATT+CGG 0.465068 1_4:+65892586 None:intergenic
TCATAATTTGTCTAAAATTG+TGG 0.469765 1_4:-65887938 Msa0178540:three_prime_UTR
AAATCAAAGTCTCTCAAGAT+TGG 0.470978 1_4:-65892237 Msa0178540:CDS
CATCAACTGGATCACCGGTT+GGG 0.476683 1_4:+65888961 None:intergenic
ATGGTATCATGATCATGCTA+TGG 0.476987 1_4:-65889480 Msa0178540:CDS
TCCCAATTAAGCCAGCTAGA+AGG 0.480033 1_4:+65889441 None:intergenic
GTGTGTGGAGATTCCATTGA+GGG 0.480167 1_4:+65889742 None:intergenic
ACCAGAGTCAACCTTCTAGC+TGG 0.483798 1_4:-65889452 Msa0178540:CDS
TATGCGTAAACGGTCGTTGG+TGG 0.488511 1_4:+65889812 None:intergenic
GCGTTCAAATACAAATGAAT+CGG 0.488677 1_4:+65888777 None:intergenic
ACTGGATCACCGGTTGGGTA+AGG 0.488939 1_4:+65888966 None:intergenic
TGGTATCATGATCATGCTAT+GGG 0.489530 1_4:-65889479 Msa0178540:CDS
ACACTTGATAAATCAACAAT+CGG 0.492745 1_4:+65888852 None:intergenic
TGAAGGGTCGCGAATGATGT+AGG 0.499265 1_4:+65889418 None:intergenic
TCAATGAAGTGGGGATAGTT+GGG 0.499761 1_4:+65889672 None:intergenic
ATTCGATCGTAGCTTTAAAA+CGG 0.500286 1_4:-65889339 Msa0178540:CDS
TTGATATTGCTTGGAATAGA+CGG 0.502899 1_4:-65887794 Msa0178540:three_prime_UTR
CCAACAATCGAAGCCCTCAA+TGG 0.506441 1_4:-65889755 Msa0178540:CDS
ATACATACCAATGCAACGTA+TGG 0.508861 1_4:-65888438 Msa0178540:CDS
CTGATTCTGCAATCTTCAGA+AGG 0.509527 1_4:-65887749 Msa0178540:three_prime_UTR
GCAGCTTATCCTTACCCAAC+CGG 0.511134 1_4:-65888975 Msa0178540:CDS
CATGGGAGTATGTGATTTGG+AGG 0.511892 1_4:+65889698 None:intergenic
CGTGTGTAGTGAAGTTGATC+AGG 0.516280 1_4:-65887640 Msa0178540:three_prime_UTR
TGGCATGTTCAAGAAGAAAT+GGG 0.517657 1_4:-65892217 Msa0178540:intron
TGGGGATAGTTGGGTCCCAT+GGG 0.525794 1_4:+65889681 None:intergenic
GGTTACAGAAATTGCGAAAG+TGG 0.529348 1_4:-65888736 Msa0178540:CDS
AGCAAAGCTACACAGTTCAT+AGG 0.530126 1_4:-65888009 Msa0178540:three_prime_UTR
CTCCAAATCACATACTCCCA+TGG 0.532484 1_4:-65889697 Msa0178540:CDS
ATCAACAAACATCTTCAGCT+TGG 0.534688 1_4:+65892314 None:intergenic
TCATCAACTGGATCACCGGT+TGG 0.535108 1_4:+65888960 None:intergenic
TGCACGTGGGAAGAAAGTTA+AGG 0.536279 1_4:-65888544 Msa0178540:CDS
AGTTTCATCAACTGGATCAC+CGG 0.536991 1_4:+65888956 None:intergenic
ATCAAACCCATACGTTGCAT+TGG 0.538238 1_4:+65888431 None:intergenic
TGATGATGATGATGTTGATA+AGG 0.538988 1_4:+65892365 None:intergenic
GTATGGGTTTGATGCAACTA+AGG 0.543489 1_4:-65888421 Msa0178540:CDS
ACCTTACAATAAGGTAGCGA+TGG 0.548168 1_4:-65892445 Msa0178540:exon
AACTACAGTGGGAATACCAT+TGG 0.548211 1_4:+65889640 None:intergenic
TTCTAAACACCATTCGTCAA+GGG 0.549756 1_4:-65887679 Msa0178540:three_prime_UTR
TCTAAACACCATTCGTCAAG+GGG 0.549913 1_4:-65887678 Msa0178540:three_prime_UTR
AGGTTCCTGATTATGAGAAA+GGG 0.549939 1_4:-65888524 Msa0178540:CDS
AATCACATACCACACCTCAC+TGG 0.559642 1_4:+65888710 None:intergenic
AGTTGATGAAACTAGTGGTA+AGG 0.560599 1_4:-65888946 Msa0178540:CDS
CGCGAAACCTTATGAAGCAC+CGG 0.561477 1_4:-65888757 Msa0178540:CDS
GCCCAAAGTCTATGGCTACA+AGG 0.562188 1_4:-65892277 Msa0178540:CDS
ATCGCTACCTTATTGTAAGG+TGG 0.562848 1_4:+65892447 None:intergenic
AATGTGTTTAAGATGAGACC+TGG 0.563487 1_4:-65888495 Msa0178540:CDS
AGGGCTTCGATTGTTGGACC+AGG 0.563868 1_4:+65889761 None:intergenic
ATTCTGATTCGGAGATTGCG+TGG 0.566742 1_4:+65892597 None:intergenic
TCATTGTAAACGGTAAAGCT+TGG 0.568812 1_4:-65889235 Msa0178540:CDS
AAACCCAAATGAATATGAAG+TGG 0.568961 1_4:+65888666 None:intergenic
ATGCGTAAACGGTCGTTGGT+GGG 0.572265 1_4:+65889813 None:intergenic
ACCGCTGGATTCAAAATCAA+GGG 0.573346 1_4:-65889560 Msa0178540:CDS
ACGGATACCGGAAAAGCTTG+TGG 0.573498 1_4:-65888880 Msa0178540:CDS
GTTACAGAAATTGCGAAAGT+GGG 0.575845 1_4:-65888735 Msa0178540:CDS
TTAGTGGTGATTCGATTGAA+GGG 0.576663 1_4:+65889402 None:intergenic
AGACTTTGGGCATATTAGGA+AGG 0.581208 1_4:+65892289 None:intergenic
ATTCATGAACCCGAAAGCGA+TGG 0.581864 1_4:-65889602 Msa0178540:CDS
CCGTATGCGTAAACGGTCGT+TGG 0.582812 1_4:+65889809 None:intergenic
CTTCACTTGATCATCTTCAA+GGG 0.582949 1_4:+65888248 None:intergenic
TTCTGATTCGGAGATTGCGT+GGG 0.582977 1_4:+65892598 None:intergenic
TACATACCAATGCAACGTAT+GGG 0.583012 1_4:-65888437 Msa0178540:CDS
TATCAAGTGTGACGCGCACA+CGG 0.586422 1_4:-65888839 Msa0178540:CDS
TCCAAATCACATACTCCCAT+GGG 0.586864 1_4:-65889696 Msa0178540:CDS
TCAAAATCAAGGGACCCACT+TGG 0.588153 1_4:-65889550 Msa0178540:CDS
CATGATACCATAAATTTCCA+GGG 0.588834 1_4:+65889492 None:intergenic
ATAACGTCTGTGATCTCAGA+TGG 0.593919 1_4:+65889047 None:intergenic
GCCAGCTAGAAGGTTGACTC+TGG 0.594113 1_4:+65889451 None:intergenic
TCATCAATGCAAGTAACGCT+AGG 0.595248 1_4:-65889172 Msa0178540:CDS
TTCCTGATTATGAGAAAGGG+TGG 0.596715 1_4:-65888521 Msa0178540:CDS
ATTCTAAACACCATTCGTCA+AGG 0.599748 1_4:-65887680 Msa0178540:three_prime_UTR
TGATTCTGCAATCTTCAGAA+GGG 0.604374 1_4:-65887748 Msa0178540:three_prime_UTR
TGCCACTGTGGATGAATCGT+AGG 0.604393 1_4:+65889281 None:intergenic
TCATTGACCAAAACAACCAA+TGG 0.609702 1_4:-65889656 Msa0178540:CDS
GCTACTTTCTTGTAAACACT+CGG 0.610756 1_4:-65888033 Msa0178540:three_prime_UTR
CACGTGGATGAGCATGCACG+TGG 0.614681 1_4:-65888558 Msa0178540:CDS
CCGTGGAGATGAACTACAGT+GGG 0.615840 1_4:+65889629 None:intergenic
GTGAGTAATGAAACTCTTGT+GGG 0.617633 1_4:-65889071 Msa0178540:CDS
GAATCTCCACACACGTGACG+TGG 0.619087 1_4:-65889733 Msa0178540:CDS
GATCGTAGCTTTAAAACGGA+CGG 0.621074 1_4:-65889335 Msa0178540:CDS
ATGTGTTTAAGATGAGACCT+GGG 0.622195 1_4:-65888494 Msa0178540:CDS
TGAATGAGAGCAAATTTGTG+AGG 0.624348 1_4:+65887712 None:intergenic
ATCGTTGAATACATATCGAA+CGG 0.625734 1_4:-65892576 Msa0178540:five_prime_UTR
ACAATCTTTGTAACAAACCC+AGG 0.627391 1_4:+65888477 None:intergenic
AACCCAAATGAATATGAAGT+GGG 0.627966 1_4:+65888667 None:intergenic
AAAATGGCATACATATGATG+TGG 0.628527 1_4:-65888066 Msa0178540:three_prime_UTR
TGTGAGTAATGAAACTCTTG+TGG 0.629319 1_4:-65889072 Msa0178540:CDS
CCCACTGTAGTTCATCTCCA+CGG 0.633373 1_4:-65889629 Msa0178540:CDS
GCCACTGTGGATGAATCGTA+GGG 0.636004 1_4:+65889282 None:intergenic
TATCCAAATAATCAACACCC+TGG 0.637082 1_4:-65889509 Msa0178540:CDS
AAATATTCTGGTTGCCACTG+TGG 0.640257 1_4:+65889269 None:intergenic
CACGTGCATGCTCATCCACG+TGG 0.643363 1_4:+65888559 None:intergenic
AAGTGGGGTCCAGTGAGGTG+TGG 0.652065 1_4:-65888719 Msa0178540:CDS
GATCCAGTTGATGAAACTAG+TGG 0.655275 1_4:-65888951 Msa0178540:CDS
AAGTAAATATATGCATACAC+AGG 0.662969 1_4:-65887969 Msa0178540:three_prime_UTR
TGGTTTAAGATTTGTACACG+TGG 0.663606 1_4:-65889126 Msa0178540:CDS
ATGGGAGTATGTGATTTGGA+GGG 0.668212 1_4:+65889699 None:intergenic
TTACAGAAATTGCGAAAGTG+GGG 0.671324 1_4:-65888734 Msa0178540:CDS
CGTGTGTGGAGATTCCATTG+AGG 0.674486 1_4:+65889741 None:intergenic
TGCGAAAGTGGGGTCCAGTG+AGG 0.677654 1_4:-65888724 Msa0178540:CDS
CTACGATCGAATAACATCAA+CGG 0.684384 1_4:+65889350 None:intergenic
TAAACACCATTCGTCAAGGG+GGG 0.690000 1_4:-65887676 Msa0178540:three_prime_UTR
CTAAACACCATTCGTCAAGG+GGG 0.692297 1_4:-65887677 Msa0178540:three_prime_UTR
CGACGTCGTACCGTTAAACG+TGG 0.694589 1_4:+65889212 None:intergenic
CGGGTTCATGAATTCCACCG+TGG 0.697997 1_4:+65889612 None:intergenic
TCGTTGGTGGGAGATCTCTG+TGG 0.702433 1_4:+65889825 None:intergenic
GTGTAGTGAAGTTGATCAGG+TGG 0.707288 1_4:-65887637 Msa0178540:three_prime_UTR
ACCGTGGAGATGAACTACAG+TGG 0.716142 1_4:+65889628 None:intergenic
AAATCGAATTCGTTACCGTG+TGG 0.717800 1_4:+65889374 None:intergenic
TCACCACTAAAATTACCACA+CGG 0.733048 1_4:-65889389 Msa0178540:CDS
TGAGTAATGAAACTCTTGTG+GGG 0.737873 1_4:-65889070 Msa0178540:CDS
ACCCTACGATTCATCCACAG+TGG 0.754604 1_4:-65889283 Msa0178540:CDS
TGATGCTGTGAAGTGCCACG+TGG 0.762196 1_4:-65888574 Msa0178540:CDS
ACTGTAGTTCATCTCCACGG+TGG 0.766322 1_4:-65889626 Msa0178540:CDS
ACGTGGATGAGCATGCACGT+GGG 0.795561 1_4:-65888557 Msa0178540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAATGTAAAAATTTAATA+TGG + chr1_4:65888323-65888342 None:intergenic 10.0%
!!! TTTATTACTTTTTTAAACAT+GGG + chr1_4:65888945-65888964 None:intergenic 10.0%
!!! TTTTATTACTTTTTTAAACA+TGG + chr1_4:65888946-65888965 None:intergenic 10.0%
!!! CATATTTAAATATTTTTCAT+TGG - chr1_4:65889083-65889102 Msa0178540:CDS 10.0%
!!! ACTCATTTATTATATTTTAA+AGG - chr1_4:65889744-65889763 Msa0178540:CDS 10.0%
!!! ATTTTTAGAAATATCTCTTT+AGG - chr1_4:65889283-65889302 Msa0178540:CDS 15.0%
!!! TTTTTAGAAATATCTCTTTA+GGG - chr1_4:65889284-65889303 Msa0178540:CDS 15.0%
!! AAATATAATAAATGAGTTTG+AGG + chr1_4:65889741-65889760 None:intergenic 15.0%
!!! ATATTTTTATAAAACACCTA+TGG - chr1_4:65889926-65889945 Msa0178540:intron 15.0%
!! GTAGAATTAAAATTAAACAA+TGG + chr1_4:65890175-65890194 None:intergenic 15.0%
!!! TATGAAATTTGTAATTTTAC+CGG - chr1_4:65891239-65891258 Msa0178540:intron 15.0%
!! AGTAATATAAAGAGAGAAAA+AGG + chr1_4:65887683-65887702 None:intergenic 20.0%
!! TATCTAAATTAAAAAAACCC+AGG + chr1_4:65888214-65888233 None:intergenic 20.0%
!! TAGATAACTTTCTTTCTTAT+TGG - chr1_4:65888228-65888247 Msa0178540:three_prime_UTR 20.0%
!! AGTTCAATCAAAATAGTTAA+TGG - chr1_4:65888288-65888307 Msa0178540:intron 20.0%
!!! ATTGATTTTATCTTCCAAAA+AGG + chr1_4:65888466-65888485 None:intergenic 20.0%
!!! TATTACTCATTTTTACAAGT+GGG + chr1_4:65889025-65889044 None:intergenic 20.0%
!!! AGAGATATTTCTAAAAATAG+TGG + chr1_4:65889281-65889300 None:intergenic 20.0%
!! CTATATTTACCCTAAATTTA+CGG - chr1_4:65889380-65889399 Msa0178540:CDS 20.0%
!!! AATTTTAGGAATGAAATCTA+AGG + chr1_4:65889645-65889664 None:intergenic 20.0%
!! AAAAAATAAGACAAAGGAAA+AGG - chr1_4:65889879-65889898 Msa0178540:intron 20.0%
!! AATATCTACATCAAAATTGA+AGG + chr1_4:65891865-65891884 None:intergenic 20.0%
!!! TTCAATTTTGATGTAGATAT+TGG - chr1_4:65891864-65891883 Msa0178540:intron 20.0%
!! AAAACATAAGAAACAAATGT+AGG + chr1_4:65892027-65892046 None:intergenic 20.0%
!!! TCATAATTTGTCTAAAATTG+TGG - chr1_4:65892223-65892242 Msa0178540:CDS 20.0%
!!! AGATTAATTGCATTTGTTTT+TGG - chr1_4:65892286-65892305 Msa0178540:CDS 20.0%
!!! TAGTGTAGTTTTTTTTTTGT+TGG - chr1_4:65892584-65892603 Msa0178540:five_prime_UTR 20.0%
!!! AGTGTAGTTTTTTTTTTGTT+GGG - chr1_4:65892585-65892604 Msa0178540:five_prime_UTR 20.0%
! AATAAAGACAACACAATAAG+CGG + chr1_4:65888019-65888038 None:intergenic 25.0%
! AAACAAGTAAAGCATGAATT+TGG + chr1_4:65888050-65888069 None:intergenic 25.0%
!! ATCTCTAGATAATTTTTCTG+TGG - chr1_4:65888150-65888169 Msa0178540:intron 25.0%
!!! AAATGTTAACTTGTTCTCTT+GGG + chr1_4:65888361-65888380 None:intergenic 25.0%
!!! AAAATGTTAACTTGTTCTCT+TGG + chr1_4:65888362-65888381 None:intergenic 25.0%
! ATTTATTACACATGAAGAGA+AGG - chr1_4:65888412-65888431 Msa0178540:CDS 25.0%
! TTCCATAAACATTGTGTTTA+CGG + chr1_4:65888491-65888510 None:intergenic 25.0%
!! TGAAAGTGACTTATTTCTTT+GGG + chr1_4:65888747-65888766 None:intergenic 25.0%
!! TTGAAAGTGACTTATTTCTT+TGG + chr1_4:65888748-65888767 None:intergenic 25.0%
! GTAATAAAATGTGTACTACT+TGG - chr1_4:65888957-65888976 Msa0178540:CDS 25.0%
! TATTACTTCTTTATGCAAGT+GGG + chr1_4:65888984-65889003 None:intergenic 25.0%
! TTATTACTTCTTTATGCAAG+TGG + chr1_4:65888985-65889004 None:intergenic 25.0%
! GTAATAAAATGTGTACTACT+TGG - chr1_4:65888957-65888976 Msa0178540:CDS 25.0%
!!! CTATTACTCATTTTTACAAG+TGG + chr1_4:65889026-65889045 None:intergenic 25.0%
! GGAATTGTAATAATCAATCA+TGG + chr1_4:65889430-65889449 None:intergenic 25.0%
! TGTAAATTTGTAGCATTTGA+TGG + chr1_4:65889457-65889476 None:intergenic 25.0%
!!! AGTTGTCACTAAATTTTTAG+AGG - chr1_4:65889588-65889607 Msa0178540:CDS 25.0%
!!! ACTAAATTTTTAGAGGACAT+GGG - chr1_4:65889595-65889614 Msa0178540:CDS 25.0%
!!! ACATTTTTGGACAACTATAA+CGG - chr1_4:65889696-65889715 Msa0178540:CDS 25.0%
!! AATGATTTTGCAAATATTCG+TGG - chr1_4:65889814-65889833 Msa0178540:CDS 25.0%
! TGGAGAAAAAAATAAGACAA+AGG - chr1_4:65889873-65889892 Msa0178540:intron 25.0%
! AATATTGTGATCAATACCAT+AGG + chr1_4:65889945-65889964 None:intergenic 25.0%
!!! TATGGTATTGATCACAATAT+TGG - chr1_4:65889944-65889963 Msa0178540:intron 25.0%
!!! GTTTTTTTTGACGAAAATTG+TGG + chr1_4:65890000-65890019 None:intergenic 25.0%
!! TTTTCGTCAAAAAAAACTAG+TGG - chr1_4:65890003-65890022 Msa0178540:intron 25.0%
! ACACTTGATAAATCAACAAT+CGG + chr1_4:65891312-65891331 None:intergenic 25.0%
!! TATTCATTTGGGTTTGTTTA+AGG - chr1_4:65891503-65891522 Msa0178540:intron 25.0%
!! TTGTTACAAAGATTGTTGTT+AGG - chr1_4:65891691-65891710 Msa0178540:intron 25.0%
! AGAGTCAACAATGATAATAT+AGG - chr1_4:65891947-65891966 Msa0178540:intron 25.0%
! AAGTAAATATATGCATACAC+AGG - chr1_4:65892192-65892211 Msa0178540:intron 25.0%
!!! ATTTGTTTTTGGTCGAATTT+GGG - chr1_4:65892297-65892316 Msa0178540:CDS 25.0%
!!! ACCTCAATTTTGTTTTTCTA+TGG - chr1_4:65892557-65892576 Msa0178540:five_prime_UTR 25.0%
! ACCATAGAAAAACAAAATTG+AGG + chr1_4:65892561-65892580 None:intergenic 25.0%
!!! GTGTAGTTTTTTTTTTGTTG+GGG - chr1_4:65892586-65892605 Msa0178540:five_prime_UTR 25.0%
TGTATTCAACGATTCTGATT+CGG + chr1_4:65887578-65887597 None:intergenic 30.0%
ATCGTTGAATACATATCGAA+CGG - chr1_4:65887585-65887604 Msa0178540:three_prime_UTR 30.0%
! TGATGATGATGATGTTGATA+AGG + chr1_4:65887799-65887818 None:intergenic 30.0%
! ATCTTGAGAGACTTTGATTT+GGG + chr1_4:65887924-65887943 None:intergenic 30.0%
AATCTTGAGAGACTTTGATT+TGG + chr1_4:65887925-65887944 None:intergenic 30.0%
AAATCAAAGTCTCTCAAGAT+TGG - chr1_4:65887924-65887943 Msa0178540:three_prime_UTR 30.0%
ATCCTAAGATTCATGAACTT+TGG + chr1_4:65888086-65888105 None:intergenic 30.0%
AATACAAAGTTTCTGATACC+TGG - chr1_4:65888193-65888212 Msa0178540:intron 30.0%
ATACAAAGTTTCTGATACCT+GGG - chr1_4:65888194-65888213 Msa0178540:intron 30.0%
!! AATGTTAACTTGTTCTCTTG+GGG + chr1_4:65888360-65888379 None:intergenic 30.0%
!!! TTTTTTGCATTTGTCACTGA+AGG + chr1_4:65888717-65888736 None:intergenic 30.0%
! TGGTATTAAAGCATCCAAAA+TGG + chr1_4:65889230-65889249 None:intergenic 30.0%
!! AAGAAGGTACCGTAAATTTA+GGG + chr1_4:65889392-65889411 None:intergenic 30.0%
!! AAAGAAGGTACCGTAAATTT+AGG + chr1_4:65889393-65889412 None:intergenic 30.0%
TTTGTAGCATTTGATGGAAA+AGG + chr1_4:65889451-65889470 None:intergenic 30.0%
GTTATAGTTGATTATGCATC+TGG + chr1_4:65889541-65889560 None:intergenic 30.0%
!! CACTAAATTTTTAGAGGACA+TGG - chr1_4:65889594-65889613 Msa0178540:CDS 30.0%
! TGAAGAAAGTATAGAACCTT+GGG + chr1_4:65889789-65889808 None:intergenic 30.0%
! TTGAAGAAAGTATAGAACCT+TGG + chr1_4:65889790-65889809 None:intergenic 30.0%
ATAATTCATTCACCAACTAG+TGG - chr1_4:65889973-65889992 Msa0178540:intron 30.0%
!!! TAAGATCTTTTTAGAGCTTG+TGG + chr1_4:65890030-65890049 None:intergenic 30.0%
AATTAAACAATGGTCCAAAG+TGG + chr1_4:65890165-65890184 None:intergenic 30.0%
GCATTATAGAAAACAAGTTG+TGG + chr1_4:65890309-65890328 None:intergenic 30.0%
!!! TATGACTTTTTTGTCCAAGT+GGG + chr1_4:65890628-65890647 None:intergenic 30.0%
!!! ATATGACTTTTTTGTCCAAG+TGG + chr1_4:65890629-65890648 None:intergenic 30.0%
CATGATACCATAAATTTCCA+GGG + chr1_4:65890672-65890691 None:intergenic 30.0%
TCATGATACCATAAATTTCC+AGG + chr1_4:65890673-65890692 None:intergenic 30.0%
!! ATTCGATCGTAGCTTTAAAA+CGG - chr1_4:65890822-65890841 Msa0178540:intron 30.0%
! TCGATTTTCATGAATTCAAC+TGG - chr1_4:65890850-65890869 Msa0178540:intron 30.0%
! CGATTTTCATGAATTCAACT+GGG - chr1_4:65890851-65890870 Msa0178540:intron 30.0%
!!! TTTAGACTCTTTTTCAGCAA+TGG - chr1_4:65891015-65891034 Msa0178540:intron 30.0%
CATCTGATTCTGCTTATATT+GGG - chr1_4:65891058-65891077 Msa0178540:intron 30.0%
GCGTTCAAATACAAATGAAT+CGG + chr1_4:65891387-65891406 None:intergenic 30.0%
AACCCAAATGAATATGAAGT+GGG + chr1_4:65891497-65891516 None:intergenic 30.0%
AAACCCAAATGAATATGAAG+TGG + chr1_4:65891498-65891517 None:intergenic 30.0%
!! TTTGGGTTTGTTTAAGGTTT+TGG - chr1_4:65891509-65891528 Msa0178540:intron 30.0%
GGTGAAATCTGATGAATTTA+AGG - chr1_4:65891545-65891564 Msa0178540:intron 30.0%
TCATCATAGCATTATCTTCA+TGG + chr1_4:65891891-65891910 None:intergenic 30.0%
!! TTATCATTGTTGACTCTCAT+TGG + chr1_4:65891944-65891963 None:intergenic 30.0%
ACAGATTGAACTTGTATTGT+AGG - chr1_4:65892072-65892091 Msa0178540:intron 30.0%
GAACTTGTATTGTAGGAAAA+TGG - chr1_4:65892079-65892098 Msa0178540:intron 30.0%
AAAATGGCATACATATGATG+TGG - chr1_4:65892095-65892114 Msa0178540:intron 30.0%
!!! CATTTGTTTTTGGTCGAATT+TGG - chr1_4:65892296-65892315 Msa0178540:CDS 30.0%
! TTTGGGTTCTTGTAATATAG+TGG - chr1_4:65892314-65892333 Msa0178540:CDS 30.0%
CTATGAGAATTGATATTGCT+TGG - chr1_4:65892358-65892377 Msa0178540:CDS 30.0%
TTGATATTGCTTGGAATAGA+CGG - chr1_4:65892367-65892386 Msa0178540:CDS 30.0%
CAGTGAGAACTCAAAACAAT+AGG + chr1_4:65887651-65887670 None:intergenic 35.0%
CTCAAATCCACCTTACAATA+AGG - chr1_4:65887707-65887726 Msa0178540:three_prime_UTR 35.0%
ATCAACAAACATCTTCAGCT+TGG + chr1_4:65887850-65887869 None:intergenic 35.0%
TTGGCATGTTCAAGAAGAAA+TGG - chr1_4:65887943-65887962 Msa0178540:three_prime_UTR 35.0%
TGGCATGTTCAAGAAGAAAT+GGG - chr1_4:65887944-65887963 Msa0178540:three_prime_UTR 35.0%
CATGCTTTACTTGTTTCGAT+AGG - chr1_4:65888054-65888073 Msa0178540:three_prime_UTR 35.0%
GACCAAAGTTCATGAATCTT+AGG - chr1_4:65888081-65888100 Msa0178540:intron 35.0%
CTCCGTAAACACAATGTTTA+TGG - chr1_4:65888486-65888505 Msa0178540:CDS 35.0%
! CTTAAAGCATCTCCAATAGA+GGG - chr1_4:65888799-65888818 Msa0178540:CDS 35.0%
! ATTTTTCTTCCTCCAATGGA+GGG + chr1_4:65888858-65888877 None:intergenic 35.0%
! AATTTTTCTTCCTCCAATGG+AGG + chr1_4:65888859-65888878 None:intergenic 35.0%
! CTCAATTTTTCTTCCTCCAA+TGG + chr1_4:65888862-65888881 None:intergenic 35.0%
TATAGTTGTCCGTTCCTTAA+CGG + chr1_4:65888888-65888907 None:intergenic 35.0%
CCAATGGCAATACACTAATA+AGG + chr1_4:65889112-65889131 None:intergenic 35.0%
CCTTATTAGTGTATTGCCAT+TGG - chr1_4:65889109-65889128 Msa0178540:CDS 35.0%
TAAGAACTCAATGACTCCAA+TGG + chr1_4:65889128-65889147 None:intergenic 35.0%
GGAGTCATTGAGTTCTTAAT+AGG - chr1_4:65889130-65889149 Msa0178540:CDS 35.0%
TAAATAAGTGATGTGTCACG+TGG - chr1_4:65889172-65889191 Msa0178540:CDS 35.0%
AAATAAGTGATGTGTCACGT+GGG - chr1_4:65889173-65889192 Msa0178540:CDS 35.0%
CATTTAAGGAGTCCTTGTTA+GGG - chr1_4:65889199-65889218 Msa0178540:CDS 35.0%
AAAATGGTAGTTCCCTAACA+AGG + chr1_4:65889214-65889233 None:intergenic 35.0%
! TTGTTAGGGAACTACCATTT+TGG - chr1_4:65889213-65889232 Msa0178540:CDS 35.0%
! GGTACCTTCTTTTCTCAATA+AGG - chr1_4:65889401-65889420 Msa0178540:CDS 35.0%
GCTACCTTATTGAGAAAAGA+AGG + chr1_4:65889408-65889427 None:intergenic 35.0%
AAGGAACTCTGCTTAAAAGA+AGG + chr1_4:65889483-65889502 None:intergenic 35.0%
ACTATAACGGTTGTTCCAAA+CGG - chr1_4:65889709-65889728 Msa0178540:CDS 35.0%
AGTTTGAGGAAATTACCGTT+TGG + chr1_4:65889727-65889746 None:intergenic 35.0%
TTGGGTCATCAAAAAAGGAA+GGG + chr1_4:65889771-65889790 None:intergenic 35.0%
TGGATGACACTAAAAAGGTT+GGG + chr1_4:65890103-65890122 None:intergenic 35.0%
GGAGAATGAGTTATCACTAT+CGG + chr1_4:65890144-65890163 None:intergenic 35.0%
TGATAACTCATTCTCCACTT+TGG - chr1_4:65890148-65890167 Msa0178540:intron 35.0%
GTTTAATCCGTATGCGTAAA+CGG + chr1_4:65890362-65890381 None:intergenic 35.0%
AAACACAAAGCAACAATTCC+TGG - chr1_4:65890382-65890401 Msa0178540:intron 35.0%
!!! TTGTTTTGGTCAATGAAGTG+GGG + chr1_4:65890501-65890520 None:intergenic 35.0%
!!! GTTGTTTTGGTCAATGAAGT+GGG + chr1_4:65890502-65890521 None:intergenic 35.0%
TCATTGACCAAAACAACCAA+TGG - chr1_4:65890505-65890524 Msa0178540:intron 35.0%
TATCCAAATAATCAACACCC+TGG - chr1_4:65890652-65890671 Msa0178540:intron 35.0%
!! TTTCCAGGGTGTTGATTATT+TGG + chr1_4:65890658-65890677 None:intergenic 35.0%
ATCAACACCCTGGAAATTTA+TGG - chr1_4:65890662-65890681 Msa0178540:intron 35.0%
ATGGTATCATGATCATGCTA+TGG - chr1_4:65890681-65890700 Msa0178540:intron 35.0%
TGGTATCATGATCATGCTAT+GGG - chr1_4:65890682-65890701 Msa0178540:intron 35.0%
TTAGTGGTGATTCGATTGAA+GGG + chr1_4:65890762-65890781 None:intergenic 35.0%
TTTAGTGGTGATTCGATTGA+AGG + chr1_4:65890763-65890782 None:intergenic 35.0%
TCACCACTAAAATTACCACA+CGG - chr1_4:65890772-65890791 Msa0178540:intron 35.0%
! TTACCGTGTGGTAATTTTAG+TGG + chr1_4:65890778-65890797 None:intergenic 35.0%
CTACGATCGAATAACATCAA+CGG + chr1_4:65890814-65890833 None:intergenic 35.0%
ATTGCGTCACCAAAATATTC+TGG + chr1_4:65890907-65890926 None:intergenic 35.0%
TCATTGTAAACGGTAAAGCT+TGG - chr1_4:65890926-65890945 Msa0178540:intron 35.0%
! TGGTTTAAGATTTGTACACG+TGG - chr1_4:65891035-65891054 Msa0178540:intron 35.0%
GCATCTGATTCTGCTTATAT+TGG - chr1_4:65891057-65891076 Msa0178540:intron 35.0%
AGAGTTTCATTACTCACAAC+TGG + chr1_4:65891087-65891106 None:intergenic 35.0%
TGTGAGTAATGAAACTCTTG+TGG - chr1_4:65891089-65891108 Msa0178540:intron 35.0%
GTGAGTAATGAAACTCTTGT+GGG - chr1_4:65891090-65891109 Msa0178540:intron 35.0%
TGAGTAATGAAACTCTTGTG+GGG - chr1_4:65891091-65891110 Msa0178540:intron 35.0%
! TTACCACTAGTTTCATCAAC+TGG + chr1_4:65891216-65891235 None:intergenic 35.0%
!! AGTTGATGAAACTAGTGGTA+AGG - chr1_4:65891215-65891234 Msa0178540:intron 35.0%
AAAAAGAAGTTGACACGTCA+CGG - chr1_4:65891262-65891281 Msa0178540:intron 35.0%
ACTTTCGCAATTTCTGTAAC+CGG + chr1_4:65891426-65891445 None:intergenic 35.0%
GTTACAGAAATTGCGAAAGT+GGG - chr1_4:65891426-65891445 Msa0178540:intron 35.0%
TTACAGAAATTGCGAAAGTG+GGG - chr1_4:65891427-65891446 Msa0178540:intron 35.0%
TCACCCACTTCATATTCATT+TGG - chr1_4:65891491-65891510 Msa0178540:intron 35.0%
CACCCACTTCATATTCATTT+GGG - chr1_4:65891492-65891511 Msa0178540:intron 35.0%
!!! GTTTAAGGTTTTGGATCAGA+CGG - chr1_4:65891518-65891537 Msa0178540:intron 35.0%
AAGGTTCCTGATTATGAGAA+AGG - chr1_4:65891636-65891655 Msa0178540:intron 35.0%
AGGTTCCTGATTATGAGAAA+GGG - chr1_4:65891637-65891656 Msa0178540:intron 35.0%
! AATGTGTTTAAGATGAGACC+TGG - chr1_4:65891666-65891685 Msa0178540:intron 35.0%
! ATGTGTTTAAGATGAGACCT+GGG - chr1_4:65891667-65891686 Msa0178540:intron 35.0%
ACAATCTTTGTAACAAACCC+AGG + chr1_4:65891687-65891706 None:intergenic 35.0%
ATACATACCAATGCAACGTA+TGG - chr1_4:65891723-65891742 Msa0178540:intron 35.0%
TACATACCAATGCAACGTAT+GGG - chr1_4:65891724-65891743 Msa0178540:intron 35.0%
CTTCACTTGATCATCTTCAA+GGG + chr1_4:65891916-65891935 None:intergenic 35.0%
!!! GTATAAATGCATGTTTTGGC+TGG + chr1_4:65892001-65892020 None:intergenic 35.0%
! GCACGTATAAATGCATGTTT+TGG + chr1_4:65892005-65892024 None:intergenic 35.0%
! GCTACTTTCTTGTAAACACT+CGG - chr1_4:65892128-65892147 Msa0178540:intron 35.0%
TGATTCTGCAATCTTCAGAA+GGG - chr1_4:65892413-65892432 Msa0178540:CDS 35.0%
TGAATGAGAGCAAATTTGTG+AGG + chr1_4:65892452-65892471 None:intergenic 35.0%
!! TTTGCTCTCATTCACTTTTC+TGG - chr1_4:65892458-65892477 Msa0178540:five_prime_UTR 35.0%
ATTCTAAACACCATTCGTCA+AGG - chr1_4:65892481-65892500 Msa0178540:five_prime_UTR 35.0%
TTCTAAACACCATTCGTCAA+GGG - chr1_4:65892482-65892501 Msa0178540:five_prime_UTR 35.0%
TGTTGGGGATTTAGTAAGTT+TGG - chr1_4:65892601-65892620 Msa0178540:five_prime_UTR 35.0%
ATCGCTACCTTATTGTAAGG+TGG + chr1_4:65887717-65887736 None:intergenic 40.0%
ACCTTACAATAAGGTAGCGA+TGG - chr1_4:65887716-65887735 Msa0178540:three_prime_UTR 40.0%
TCCATCGCTACCTTATTGTA+AGG + chr1_4:65887720-65887739 None:intergenic 40.0%
AGACTTTGGGCATATTAGGA+AGG + chr1_4:65887875-65887894 None:intergenic 40.0%
CCATAGACTTTGGGCATATT+AGG + chr1_4:65887879-65887898 None:intergenic 40.0%
CCTAATATGCCCAAAGTCTA+TGG - chr1_4:65887876-65887895 Msa0178540:three_prime_UTR 40.0%
ACCTTGTAGCCATAGACTTT+GGG + chr1_4:65887888-65887907 None:intergenic 40.0%
AACCTTGTAGCCATAGACTT+TGG + chr1_4:65887889-65887908 None:intergenic 40.0%
TATGGCTACAAGGTTGTAGA+TGG - chr1_4:65887894-65887913 Msa0178540:three_prime_UTR 40.0%
TTCTCTTGGGGCATAAGTTA+AGG + chr1_4:65888348-65888367 None:intergenic 40.0%
AACCACATGATTGAGTCGTT+GGG + chr1_4:65888776-65888795 None:intergenic 40.0%
AAACCACATGATTGAGTCGT+TGG + chr1_4:65888777-65888796 None:intergenic 40.0%
CCTCTATTGGAGATGCTTTA+AGG + chr1_4:65888801-65888820 None:intergenic 40.0%
! CCTTAAAGCATCTCCAATAG+AGG - chr1_4:65888798-65888817 Msa0178540:CDS 40.0%
GTTAAGTAAGGACCCTCTAT+TGG + chr1_4:65888814-65888833 None:intergenic 40.0%
TAGAGGGTCCTTACTTAACA+AGG - chr1_4:65888815-65888834 Msa0178540:CDS 40.0%
GAAAAATTGAGTCCCCGTTA+AGG - chr1_4:65888871-65888890 Msa0178540:CDS 40.0%
ATAGTTGTCCGTTCCTTAAC+GGG + chr1_4:65888887-65888906 None:intergenic 40.0%
TCTCTCTCCTGAGTAACTAA+CGG - chr1_4:65888917-65888936 Msa0178540:CDS 40.0%
AATAAGTGATGTGTCACGTG+GGG - chr1_4:65889174-65889193 Msa0178540:CDS 40.0%
CCTAACAAGGACTCCTTAAA+TGG + chr1_4:65889201-65889220 None:intergenic 40.0%
CCATTTAAGGAGTCCTTGTT+AGG - chr1_4:65889198-65889217 Msa0178540:CDS 40.0%
TCGTAAATCAATCATGGGCA+TGG + chr1_4:65889257-65889276 None:intergenic 40.0%
GTGGCTCGTAAATCAATCAT+GGG + chr1_4:65889262-65889281 None:intergenic 40.0%
AGTGGCTCGTAAATCAATCA+TGG + chr1_4:65889263-65889282 None:intergenic 40.0%
ACCCAAATGCCAGTTTGTAA+AGG - chr1_4:65889508-65889527 Msa0178540:CDS 40.0%
CCCTTTACAAACTGGCATTT+GGG + chr1_4:65889512-65889531 None:intergenic 40.0%
CCCAAATGCCAGTTTGTAAA+GGG - chr1_4:65889509-65889528 Msa0178540:CDS 40.0%
ACCCTTTACAAACTGGCATT+TGG + chr1_4:65889513-65889532 None:intergenic 40.0%
CATGGGAAAATGTTAGCTGT+AGG - chr1_4:65889612-65889631 Msa0178540:CDS 40.0%
! GCGTTTGGGCAATGAATTTT+AGG + chr1_4:65889659-65889678 None:intergenic 40.0%
CTTGGGTCATCAAAAAAGGA+AGG + chr1_4:65889772-65889791 None:intergenic 40.0%
!!! CTTCCTTTTTTGATGACCCA+AGG - chr1_4:65889770-65889789 Msa0178540:CDS 40.0%
GAACCTTGGGTCATCAAAAA+AGG + chr1_4:65889776-65889795 None:intergenic 40.0%
GAAAATTGTGGTCCACTAGT+TGG + chr1_4:65889988-65890007 None:intergenic 40.0%
GATGACACTAAAAAGGTTGG+GGG + chr1_4:65890101-65890120 None:intergenic 40.0%
GGATGACACTAAAAAGGTTG+GGG + chr1_4:65890102-65890121 None:intergenic 40.0%
GTGGATGACACTAAAAAGGT+TGG + chr1_4:65890104-65890123 None:intergenic 40.0%
CTGAGTGGATGACACTAAAA+AGG + chr1_4:65890108-65890127 None:intergenic 40.0%
!! CTTTTTAGTGTCATCCACTC+AGG - chr1_4:65890106-65890125 Msa0178540:intron 40.0%
ATCACTATCGGTAAGTGTCA+AGG + chr1_4:65890132-65890151 None:intergenic 40.0%
! ATGGGAGTATGTGATTTGGA+GGG + chr1_4:65890465-65890484 None:intergenic 40.0%
TCCAAATCACATACTCCCAT+GGG - chr1_4:65890465-65890484 Msa0178540:intron 40.0%
TCAATGAAGTGGGGATAGTT+GGG + chr1_4:65890492-65890511 None:intergenic 40.0%
!!! GGTTGTTTTGGTCAATGAAG+TGG + chr1_4:65890503-65890522 None:intergenic 40.0%
!! GGGAATACCATTGGTTGTTT+TGG + chr1_4:65890515-65890534 None:intergenic 40.0%
AACTACAGTGGGAATACCAT+TGG + chr1_4:65890524-65890543 None:intergenic 40.0%
TTTGGATTTCCATCGCTTTC+GGG + chr1_4:65890571-65890590 None:intergenic 40.0%
GTTTGGATTTCCATCGCTTT+CGG + chr1_4:65890572-65890591 None:intergenic 40.0%
ACCGCTGGATTCAAAATCAA+GGG - chr1_4:65890601-65890620 Msa0178540:intron 40.0%
! TCCCTTGATTTTGAATCCAG+CGG + chr1_4:65890605-65890624 None:intergenic 40.0%
! AACCTTCTAGCTGGCTTAAT+TGG - chr1_4:65890718-65890737 Msa0178540:intron 40.0%
! ACCTTCTAGCTGGCTTAATT+GGG - chr1_4:65890719-65890738 Msa0178540:intron 40.0%
AAATCGAATTCGTTACCGTG+TGG + chr1_4:65890790-65890809 None:intergenic 40.0%
!! GATCGTAGCTTTAAAACGGA+CGG - chr1_4:65890826-65890845 Msa0178540:intron 40.0%
! AAATATTCTGGTTGCCACTG+TGG + chr1_4:65890895-65890914 None:intergenic 40.0%
! CAGTGGCAACCAGAATATTT+TGG - chr1_4:65890895-65890914 Msa0178540:intron 40.0%
GGTGACGCAATCATTGTAAA+CGG - chr1_4:65890916-65890935 Msa0178540:intron 40.0%
TAAAGCTTGGCCACGTTTAA+CGG - chr1_4:65890939-65890958 Msa0178540:intron 40.0%
TCATCAATGCAAGTAACGCT+AGG - chr1_4:65890989-65891008 Msa0178540:intron 40.0%
ATAACGTCTGTGATCTCAGA+TGG + chr1_4:65891117-65891136 None:intergenic 40.0%
AGTTTCATCAACTGGATCAC+CGG + chr1_4:65891208-65891227 None:intergenic 40.0%
!! GATCCAGTTGATGAAACTAG+TGG - chr1_4:65891210-65891229 Msa0178540:intron 40.0%
! GACGTGTCAACTTCTTTTTC+CGG + chr1_4:65891261-65891280 None:intergenic 40.0%
! GGATATTCCACAAGCTTTTC+CGG + chr1_4:65891291-65891310 None:intergenic 40.0%
GGTTACAGAAATTGCGAAAG+TGG - chr1_4:65891425-65891444 Msa0178540:intron 40.0%
TTCCTGATTATGAGAAAGGG+TGG - chr1_4:65891640-65891659 Msa0178540:intron 40.0%
TTCCACCCTTTCTCATAATC+AGG + chr1_4:65891645-65891664 None:intergenic 40.0%
ATCAAACCCATACGTTGCAT+TGG + chr1_4:65891733-65891752 None:intergenic 40.0%
GTATGGGTTTGATGCAACTA+AGG - chr1_4:65891740-65891759 Msa0178540:intron 40.0%
TTTGATGCAACTAAGGAGTC+TGG - chr1_4:65891747-65891766 Msa0178540:intron 40.0%
GCTTCACTTGATCATCTTCA+AGG + chr1_4:65891917-65891936 None:intergenic 40.0%
AGCAAAGCTACACAGTTCAT+AGG - chr1_4:65892152-65892171 Msa0178540:intron 40.0%
CTGATTCTGCAATCTTCAGA+AGG - chr1_4:65892412-65892431 Msa0178540:CDS 40.0%
TCTAAACACCATTCGTCAAG+GGG - chr1_4:65892483-65892502 Msa0178540:five_prime_UTR 40.0%
!! TTCTGATTCGGAGATTGCGT+GGG + chr1_4:65887566-65887585 None:intergenic 45.0%
!! ATTCTGATTCGGAGATTGCG+TGG + chr1_4:65887567-65887586 None:intergenic 45.0%
! GTTGCGTCGCTAAACCTTTT+TGG - chr1_4:65888449-65888468 Msa0178540:CDS 45.0%
ACCACATGATTGAGTCGTTG+GGG + chr1_4:65888775-65888794 None:intergenic 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG + chr1_4:65888826-65888845 None:intergenic 45.0%
ATTGAGTCCCCGTTAAGGAA+CGG - chr1_4:65888876-65888895 Msa0178540:CDS 45.0%
TAGTTGTCCGTTCCTTAACG+GGG + chr1_4:65888886-65888905 None:intergenic 45.0%
CTCTCTCCTGAGTAACTAAC+GGG - chr1_4:65888918-65888937 Msa0178540:CDS 45.0%
ACTGGCATTTGGGTAGCTAA+AGG + chr1_4:65889502-65889521 None:intergenic 45.0%
! ACCTCTGGGCTACACATTTT+TGG - chr1_4:65889683-65889702 Msa0178540:CDS 45.0%
TCCAAAAATGTGTAGCCCAG+AGG + chr1_4:65889687-65889706 None:intergenic 45.0%
!! CGTGGTACTGATATCTCACA+TGG - chr1_4:65889832-65889851 Msa0178540:CDS 45.0%
TCACATGGCATCCAAGTCAT+TGG - chr1_4:65889847-65889866 Msa0178540:intron 45.0%
TTTCTCCACAGCCAATGACT+TGG + chr1_4:65889861-65889880 None:intergenic 45.0%
GTGTGTGGAGATTCCATTGA+GGG + chr1_4:65890422-65890441 None:intergenic 45.0%
! CATGGGAGTATGTGATTTGG+AGG + chr1_4:65890466-65890485 None:intergenic 45.0%
CTCCAAATCACATACTCCCA+TGG - chr1_4:65890464-65890483 Msa0178540:intron 45.0%
! TCCCATGGGAGTATGTGATT+TGG + chr1_4:65890469-65890488 None:intergenic 45.0%
GTCAATGAAGTGGGGATAGT+TGG + chr1_4:65890493-65890512 None:intergenic 45.0%
ATTCATGAACCCGAAAGCGA+TGG - chr1_4:65890559-65890578 Msa0178540:intron 45.0%
CCAGCGGTGAAAAATGAGTT+TGG + chr1_4:65890589-65890608 None:intergenic 45.0%
!! CCAAACTCATTTTTCACCGC+TGG - chr1_4:65890586-65890605 Msa0178540:intron 45.0%
CACCGCTGGATTCAAAATCA+AGG - chr1_4:65890600-65890619 Msa0178540:intron 45.0%
TCAAAATCAAGGGACCCACT+TGG - chr1_4:65890611-65890630 Msa0178540:intron 45.0%
TCCCAATTAAGCCAGCTAGA+AGG + chr1_4:65890723-65890742 None:intergenic 45.0%
TCTGTAACCGGTGCTTCATA+AGG + chr1_4:65891414-65891433 None:intergenic 45.0%
AATCACATACCACACCTCAC+TGG + chr1_4:65891454-65891473 None:intergenic 45.0%
TGCACGTGGGAAGAAAGTTA+AGG - chr1_4:65891617-65891636 Msa0178540:intron 45.0%
CTAAACACCATTCGTCAAGG+GGG - chr1_4:65892484-65892503 Msa0178540:five_prime_UTR 45.0%
TAAACACCATTCGTCAAGGG+GGG - chr1_4:65892485-65892504 Msa0178540:five_prime_UTR 45.0%
AAATTACCCCCCTTGACGAA+TGG + chr1_4:65892494-65892513 None:intergenic 45.0%
! CGTGTGTAGTGAAGTTGATC+AGG - chr1_4:65892521-65892540 Msa0178540:five_prime_UTR 45.0%
! GTGTAGTGAAGTTGATCAGG+TGG - chr1_4:65892524-65892543 Msa0178540:five_prime_UTR 45.0%
!! ATATAATTATGTTATAATTA+AGG + chr1_4:65888385-65888404 None:intergenic 5.0%
!!! ATTAAAATAAGTTTTTTTTT+TGG - chr1_4:65888531-65888550 Msa0178540:CDS 5.0%
!!! ATATATATTATTTTTTTAGA+TGG - chr1_4:65888675-65888694 Msa0178540:CDS 5.0%
!!! TATTTTATTTTATTGAATTA+AGG + chr1_4:65892253-65892272 None:intergenic 5.0%
GCCCAAAGTCTATGGCTACA+AGG - chr1_4:65887884-65887903 Msa0178540:three_prime_UTR 50.0%
TCCCCAACGACTCAATCATG+TGG - chr1_4:65888771-65888790 Msa0178540:CDS 50.0%
TCCAATGGAGGGTCTTAACG+GGG + chr1_4:65888847-65888866 None:intergenic 50.0%
CTCCAATGGAGGGTCTTAAC+GGG + chr1_4:65888848-65888867 None:intergenic 50.0%
CCTCCAATGGAGGGTCTTAA+CGG + chr1_4:65888849-65888868 None:intergenic 50.0%
ATGGGACCCGTTAGTTACTC+AGG + chr1_4:65888927-65888946 None:intergenic 50.0%
TGTCACGTGGGGTCCATTTA+AGG - chr1_4:65889185-65889204 Msa0178540:CDS 50.0%
TCAATCATGGGCATGGCATC+TGG + chr1_4:65889250-65889269 None:intergenic 50.0%
TGCCCAAACGCTTTAACCTC+TGG - chr1_4:65889668-65889687 Msa0178540:CDS 50.0%
GCCCAAACGCTTTAACCTCT+GGG - chr1_4:65889669-65889688 Msa0178540:CDS 50.0%
! GCCCAGAGGTTAAAGCGTTT+GGG + chr1_4:65889673-65889692 None:intergenic 50.0%
! AGCCCAGAGGTTAAAGCGTT+TGG + chr1_4:65889674-65889693 None:intergenic 50.0%
ATGCGTAAACGGTCGTTGGT+GGG + chr1_4:65890351-65890370 None:intergenic 50.0%
TATGCGTAAACGGTCGTTGG+TGG + chr1_4:65890352-65890371 None:intergenic 50.0%
CCAACGACCGTTTACGCATA+CGG - chr1_4:65890352-65890371 Msa0178540:intron 50.0%
CCATTGAGGGCTTCGATTGT+TGG + chr1_4:65890409-65890428 None:intergenic 50.0%
CCAACAATCGAAGCCCTCAA+TGG - chr1_4:65890406-65890425 Msa0178540:intron 50.0%
CGTGTGTGGAGATTCCATTG+AGG + chr1_4:65890423-65890442 None:intergenic 50.0%
! ATTTTGCCACGTCACGTGTG+TGG + chr1_4:65890437-65890456 None:intergenic 50.0%
CCGTGGAGATGAACTACAGT+GGG + chr1_4:65890535-65890554 None:intergenic 50.0%
CCCACTGTAGTTCATCTCCA+CGG - chr1_4:65890532-65890551 Msa0178540:intron 50.0%
ACCGTGGAGATGAACTACAG+TGG + chr1_4:65890536-65890555 None:intergenic 50.0%
ACTGTAGTTCATCTCCACGG+TGG - chr1_4:65890535-65890554 Msa0178540:intron 50.0%
ACCAGAGTCAACCTTCTAGC+TGG - chr1_4:65890709-65890728 Msa0178540:intron 50.0%
TGAAGGGTCGCGAATGATGT+AGG + chr1_4:65890746-65890765 None:intergenic 50.0%
ACCCTACGATTCATCCACAG+TGG - chr1_4:65890878-65890897 Msa0178540:intron 50.0%
GCCACTGTGGATGAATCGTA+GGG + chr1_4:65890882-65890901 None:intergenic 50.0%
TGCCACTGTGGATGAATCGT+AGG + chr1_4:65890883-65890902 None:intergenic 50.0%
GCAGCTTATCCTTACCCAAC+CGG - chr1_4:65891186-65891205 Msa0178540:intron 50.0%
! CATCAACTGGATCACCGGTT+GGG + chr1_4:65891203-65891222 None:intergenic 50.0%
TCATCAACTGGATCACCGGT+TGG + chr1_4:65891204-65891223 None:intergenic 50.0%
AGTTGACACGTCACGGATAC+CGG - chr1_4:65891269-65891288 Msa0178540:intron 50.0%
ACGGATACCGGAAAAGCTTG+TGG - chr1_4:65891281-65891300 Msa0178540:intron 50.0%
TATCAAGTGTGACGCGCACA+CGG - chr1_4:65891322-65891341 Msa0178540:intron 50.0%
CGCGAAACCTTATGAAGCAC+CGG - chr1_4:65891404-65891423 Msa0178540:intron 50.0%
GCGGAGATTCGCATGCAATG+AGG + chr1_4:65888000-65888019 None:intergenic 55.0%
TCCCCGTTAAGACCCTCCAT+TGG - chr1_4:65888843-65888862 Msa0178540:CDS 55.0%
CCGTTAAGACCCTCCATTGG+AGG - chr1_4:65888846-65888865 Msa0178540:CDS 55.0%
GGCGTGCACCCTTTACAAAC+TGG + chr1_4:65889520-65889539 None:intergenic 55.0%
! GGCATCCAAGTCATTGGCTG+TGG - chr1_4:65889853-65889872 Msa0178540:intron 55.0%
GGTAAGTGTCAAGGCCTGAG+TGG + chr1_4:65890123-65890142 None:intergenic 55.0%
! TCGTTGGTGGGAGATCTCTG+TGG + chr1_4:65890339-65890358 None:intergenic 55.0%
CCGTATGCGTAAACGGTCGT+TGG + chr1_4:65890355-65890374 None:intergenic 55.0%
AGGGCTTCGATTGTTGGACC+AGG + chr1_4:65890403-65890422 None:intergenic 55.0%
GAATCTCCACACACGTGACG+TGG - chr1_4:65890428-65890447 Msa0178540:intron 55.0%
TGGGGATAGTTGGGTCCCAT+GGG + chr1_4:65890483-65890502 None:intergenic 55.0%
CGGGTTCATGAATTCCACCG+TGG + chr1_4:65890552-65890571 None:intergenic 55.0%
! GCCAGCTAGAAGGTTGACTC+TGG + chr1_4:65890713-65890732 None:intergenic 55.0%
CGACGTCGTACCGTTAAACG+TGG + chr1_4:65890952-65890971 None:intergenic 55.0%
! ACTGGATCACCGGTTGGGTA+AGG + chr1_4:65891198-65891217 None:intergenic 55.0%
!!! GGTTTTGGATCAGACGGAGC+TGG - chr1_4:65891524-65891543 Msa0178540:intron 55.0%
! TGATGCTGTGAAGTGCCACG+TGG - chr1_4:65891587-65891606 Msa0178540:intron 55.0%
ACGTGGATGAGCATGCACGT+GGG - chr1_4:65891604-65891623 Msa0178540:intron 55.0%
TGGAGGGTCTTAACGGGGAG+TGG + chr1_4:65888842-65888861 None:intergenic 60.0%
GTGGGGATAGTTGGGTCCCA+TGG + chr1_4:65890484-65890503 None:intergenic 60.0%
TGCGAAAGTGGGGTCCAGTG+AGG - chr1_4:65891437-65891456 Msa0178540:intron 60.0%
AAGTGGGGTCCAGTGAGGTG+TGG - chr1_4:65891442-65891461 Msa0178540:intron 60.0%
CACGTGCATGCTCATCCACG+TGG + chr1_4:65891605-65891624 None:intergenic 60.0%
CACGTGGATGAGCATGCACG+TGG - chr1_4:65891603-65891622 Msa0178540:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 65887559 65892624 65887559 ID=Msa0178540;Name=Msa0178540
chr1_4 mRNA 65887559 65892624 65887559 ID=Msa0178540-mRNA-1;Parent=Msa0178540;Name=Msa0178540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=176|1|1|1|0.66|0.5|4|566|580
chr1_4 exon 65887559 65888089 65887559 ID=Msa0178540-mRNA-1:exon:21506;Parent=Msa0178540-mRNA-1
chr1_4 exon 65888215 65888303 65888215 ID=Msa0178540-mRNA-1:exon:21505;Parent=Msa0178540-mRNA-1
chr1_4 exon 65888395 65889852 65888395 ID=Msa0178540-mRNA-1:exon:21504;Parent=Msa0178540-mRNA-1
chr1_4 exon 65892218 65892624 65892218 ID=Msa0178540-mRNA-1:exon:21503;Parent=Msa0178540-mRNA-1
chr1_4 five_prime_UTR 65892449 65892624 65892449 ID=Msa0178540-mRNA-1:five_prime_utr;Parent=Msa0178540-mRNA-1
chr1_4 CDS 65892218 65892448 65892218 ID=Msa0178540-mRNA-1:cds;Parent=Msa0178540-mRNA-1
chr1_4 CDS 65888395 65889852 65888395 ID=Msa0178540-mRNA-1:cds;Parent=Msa0178540-mRNA-1
chr1_4 CDS 65888250 65888303 65888250 ID=Msa0178540-mRNA-1:cds;Parent=Msa0178540-mRNA-1
chr1_4 three_prime_UTR 65888215 65888249 65888215 ID=Msa0178540-mRNA-1:three_prime_utr;Parent=Msa0178540-mRNA-1
chr1_4 three_prime_UTR 65887559 65888089 65887559 ID=Msa0178540-mRNA-1:three_prime_utr;Parent=Msa0178540-mRNA-1
Gene Sequence

>Msa0178540

ATGGAGAAAACAGTGCTCTTGAAGCTACTCACACTTTTAGCTCATTTACTATGTTTTGTTACCTTATCAACATCATCATCATCATCAGCTACAGTGAAACTCATAAATGCATCCAAGCTGAAGATGTTTGTTGATGACCTTCCTAATATGCCCAAAGTCTATGGCTACAAGGTTGTAGATGGCGTTCCCAAATCAAAGTCTCTCAAGATTGGCATGTTCAAGAAGAAATGGAAATTCCACAGAGATCTCCCACCAACGACCGTTTACGCATACGGATTAAACAAACACAAAGCAACAATTCCTGGTCCAACAATCGAAGCCCTCAATGGAATCTCCACACACGTGACGTGGCAAAATCATCTCCCTCCAAATCACATACTCCCATGGGACCCAACTATCCCCACTTCATTGACCAAAACAACCAATGGTATTCCCACTGTAGTTCATCTCCACGGTGGAATTCATGAACCCGAAAGCGATGGAAATCCAAACTCATTTTTCACCGCTGGATTCAAAATCAAGGGACCCACTTGGACAAAAAAGTCATATCACTATCCAAATAATCAACACCCTGGAAATTTATGGTATCATGATCATGCTATGGGTTTGACCAGAGTCAACCTTCTAGCTGGCTTAATTGGGACCTACATCATTCGCGACCCTTCAATCGAATCACCACTAAAATTACCACACGGTAACGAATTCGATTTACCGTTGATGTTATTCGATCGTAGCTTTAAAACGGACGGTTCGATTTTCATGAATTCAACTGGGAACAACCCTACGATTCATCCACAGTGGCAACCAGAATATTTTGGTGACGCAATCATTGTAAACGGTAAAGCTTGGCCACGTTTAACGGTACGACGTCGTAAGTATAGATTTCGTATCATCAATGCAAGTAACGCTAGGTTTTTTAGACTCTTTTTCAGCAATGGTTTAAGATTTGTACACGTGGCATCTGATTCTGCTTATATTGGGAAGCCAGTTGTGAGTAATGAAACTCTTGTGGGGCCATCTGAGATCACAGACGTTATTGTTGATTTTTCTGAATCAAAGAGTAATGCAGCTATTCTACGTAATGATGCAGCTTATCCTTACCCAACCGGTGATCCAGTTGATGAAACTAGTGGTAAGGTTATGAAATTTGTAATTTTACCGGAAAAAGAAGTTGACACGTCACGGATACCGGAAAAGCTTGTGGAATATCCGATTGTTGATTTATCAAGTGTGACGCGCACACGGTATATTGCTATGTATGAGTACACGAGTGATATTGATGAACCGATTCATTTGTATTTGAACGCGAAACCTTATGAAGCACCGGTTACAGAAATTGCGAAAGTGGGGTCCAGTGAGGTGTGGTATGTGATTAATTTGACTGATGATAATCACCCACTTCATATTCATTTGGGTTTGTTTAAGGTTTTGGATCAGACGGAGCTGGTGAAATCTGATGAATTTAAGGATTGTATGACGAAAAATAATGATGCTGTGAAGTGCCACGTGGATGAGCATGCACGTGGGAAGAAAGTTAAGGTTCCTGATTATGAGAAAGGGTGGAAGAATGTGTTTAAGATGAGACCTGGGTTTGTTACAAAGATTGTTGTTAGGTTTGCTTACATACATACCAATGCAACGTATGGGTTTGATGCAACTAAGGAGTCTGGTTACGTGTATCATTGTCATATATTGGACCATGAAGATAATGCTATGATGAGACCCTTGAAGATGATCAAGTGA
Protein sequence

>Msa0178540

MEKTVLLKLLTLLAHLLCFVTLSTSSSSSATVKLINASKLKMFVDDLPNMPKVYGYKVVDGVPKSKSLKIGMFKKKWKFHRDLPPTTVYAYGLNKHKATIPGPTIEALNGISTHVTWQNHLPPNHILPWDPTIPTSLTKTTNGIPTVVHLHGGIHEPESDGNPNSFFTAGFKIKGPTWTKKSYHYPNNQHPGNLWYHDHAMGLTRVNLLAGLIGTYIIRDPSIESPLKLPHGNEFDLPLMLFDRSFKTDGSIFMNSTGNNPTIHPQWQPEYFGDAIIVNGKAWPRLTVRRRKYRFRIINASNARFFRLFFSNGLRFVHVASDSAYIGKPVVSNETLVGPSEITDVIVDFSESKSNAAILRNDAAYPYPTGDPVDETSGKVMKFVILPEKEVDTSRIPEKLVEYPIVDLSSVTRTRYIAMYEYTSDIDEPIHLYLNAKPYEAPVTEIAKVGSSEVWYVINLTDDNHPLHIHLGLFKVLDQTELVKSDEFKDCMTKNNDAVKCHVDEHARGKKVKVPDYEKGWKNVFKMRPGFVTKIVVRFAYIHTNATYGFDATKESGYVYHCHILDHEDNAMMRPLKMIK*