AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042580 MtrunA17_Chr1g0208271 97.759 580 12 1 1 580 1 579 0.0 1172
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042580 AT1G71040.1 67.012 579 185 2 1 579 8 580 0.0 817
Msa0042580 AT1G23010.1 64.544 581 203 2 1 579 1 580 0.0 804

Find 173 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCAGGGTGTTGATTATT+TGG 0.126666 1_1:+73493740 None:intergenic
AACCTTCTAGCTGGCTTAAT+TGG 0.137213 1_1:-73493677 Msa0042580:CDS
TTTGGGTTTGTTTAAGGTTT+TGG 0.157715 1_1:-73492886 Msa0042580:CDS
TATTCATTTGGGTTTGTTTA+AGG 0.162430 1_1:-73492892 Msa0042580:CDS
GGTGAAATCTGATGAATTTA+AGG 0.174317 1_1:-73492850 Msa0042580:CDS
GCATCTGATTCTGCTTATAT+TGG 0.236168 1_1:-73493338 Msa0042580:CDS
AGTAATATAAAGAGAGAAAA+AGG 0.240570 1_1:+73496663 None:intergenic
GAACTTGTATTGTAGGAAAA+TGG 0.248707 1_1:-73492315 Msa0042580:intron
CCATAGACTTTGGGCATATT+AGG 0.248841 1_1:+73496467 None:intergenic
TTTGGATTTCCATCGCTTTC+GGG 0.251781 1_1:+73493827 None:intergenic
ATCAACACCCTGGAAATTTA+TGG 0.253088 1_1:-73493733 Msa0042580:CDS
GTTTGGATTTCCATCGCTTT+CGG 0.285243 1_1:+73493826 None:intergenic
TGTTGGGGATTTAGTAAGTT+TGG 0.287261 1_1:-73491792 Msa0042580:three_prime_UTR
CAGTGGCAACCAGAATATTT+TGG 0.298569 1_1:-73493500 Msa0042580:CDS
GGGAATACCATTGGTTGTTT+TGG 0.306936 1_1:+73493883 None:intergenic
TTCCACCCTTTCTCATAATC+AGG 0.308245 1_1:+73492753 None:intergenic
TCACCCACTTCATATTCATT+TGG 0.316177 1_1:-73492904 Msa0042580:CDS
ATTGCGTCACCAAAATATTC+TGG 0.317816 1_1:+73493491 None:intergenic
CCATTGAGGGCTTCGATTGT+TGG 0.320385 1_1:+73493989 None:intergenic
CCTAATATGCCCAAAGTCTA+TGG 0.326346 1_1:-73496467 Msa0042580:CDS
TTATCATTGTTGACTCTCAT+TGG 0.342861 1_1:+73492453 None:intergenic
TTTGGGTTCTTGTAATATAG+TGG 0.343682 1_1:-73492080 Msa0042580:three_prime_UTR
CTCAAATCCACCTTACAATA+AGG 0.347432 1_1:-73496636 Msa0042580:five_prime_UTR
CACCCACTTCATATTCATTT+GGG 0.348020 1_1:-73492903 Msa0042580:CDS
ATCTTGAGAGACTTTGATTT+GGG 0.361911 1_1:+73496422 None:intergenic
TTGGCATGTTCAAGAAGAAA+TGG 0.363926 1_1:-73496400 Msa0042580:CDS
AATCTTGAGAGACTTTGATT+TGG 0.364281 1_1:+73496421 None:intergenic
ACCTTGTAGCCATAGACTTT+GGG 0.371381 1_1:+73496458 None:intergenic
TAAAGCTTGGCCACGTTTAA+CGG 0.379971 1_1:-73493456 Msa0042580:CDS
CATCTGATTCTGCTTATATT+GGG 0.380154 1_1:-73493337 Msa0042580:CDS
GTCAATGAAGTGGGGATAGT+TGG 0.385690 1_1:+73493905 None:intergenic
TTACCACTAGTTTCATCAAC+TGG 0.391577 1_1:+73493182 None:intergenic
ACCTTCTAGCTGGCTTAATT+GGG 0.392286 1_1:-73493676 Msa0042580:CDS
TCATGATACCATAAATTTCC+AGG 0.392964 1_1:+73493725 None:intergenic
GTTTAATCCGTATGCGTAAA+CGG 0.393400 1_1:+73494036 None:intergenic
ACTTTCGCAATTTCTGTAAC+CGG 0.395052 1_1:+73492972 None:intergenic
AACCTTGTAGCCATAGACTT+TGG 0.396598 1_1:+73496457 None:intergenic
TCCCATGGGAGTATGTGATT+TGG 0.396819 1_1:+73493929 None:intergenic
TCATCATAGCATTATCTTCA+TGG 0.397950 1_1:+73492506 None:intergenic
AGAGTTTCATTACTCACAAC+TGG 0.408146 1_1:+73493311 None:intergenic
TTGTTACAAAGATTGTTGTT+AGG 0.409385 1_1:-73492704 Msa0042580:CDS
AAACACAAAGCAACAATTCC+TGG 0.410216 1_1:-73494013 Msa0042580:CDS
TCTGTAACCGGTGCTTCATA+AGG 0.422607 1_1:+73492984 None:intergenic
AGTTGACACGTCACGGATAC+CGG 0.424090 1_1:-73493126 Msa0042580:CDS
CTATGAGAATTGATATTGCT+TGG 0.425110 1_1:-73492036 Msa0042580:three_prime_UTR
CACCGCTGGATTCAAAATCA+AGG 0.425944 1_1:-73493795 Msa0042580:CDS
CAGTGAGAACTCAAAACAAT+AGG 0.426583 1_1:+73496695 None:intergenic
GTGGGGATAGTTGGGTCCCA+TGG 0.428785 1_1:+73493914 None:intergenic
AGAGTCAACAATGATAATAT+AGG 0.429928 1_1:-73492447 Msa0042580:intron
GCTTCACTTGATCATCTTCA+AGG 0.430685 1_1:+73492480 None:intergenic
AAGGTTCCTGATTATGAGAA+AGG 0.437090 1_1:-73492759 Msa0042580:CDS
TATGGCTACAAGGTTGTAGA+TGG 0.446660 1_1:-73496449 Msa0042580:CDS
TCCATCGCTACCTTATTGTA+AGG 0.446787 1_1:+73496626 None:intergenic
GGTGACGCAATCATTGTAAA+CGG 0.446969 1_1:-73493479 Msa0042580:CDS
TTTAGTGGTGATTCGATTGA+AGG 0.452301 1_1:+73493635 None:intergenic
CCAACGACCGTTTACGCATA+CGG 0.458246 1_1:-73494043 Msa0042580:CDS
TTTGATGCAACTAAGGAGTC+TGG 0.460440 1_1:-73492648 Msa0042580:CDS
TGTATTCAACGATTCTGATT+CGG 0.465068 1_1:+73496768 None:intergenic
TCATAATTTGTCTAAAATTG+TGG 0.469765 1_1:-73492171 Msa0042580:three_prime_UTR
AAATCAAAGTCTCTCAAGAT+TGG 0.470978 1_1:-73496419 Msa0042580:CDS
GACGTGTCAACTTCTTTATC+CGG 0.473491 1_1:+73493137 None:intergenic
CATCAACTGGATCACCGGTT+GGG 0.476683 1_1:+73493195 None:intergenic
ATGGTATCATGATCATGCTA+TGG 0.476987 1_1:-73493714 Msa0042580:CDS
TCCCAATTAAGCCAGCTAGA+AGG 0.480033 1_1:+73493675 None:intergenic
GTGTGTGGAGATTCCATTGA+GGG 0.480167 1_1:+73493976 None:intergenic
ACCAGAGTCAACCTTCTAGC+TGG 0.483798 1_1:-73493686 Msa0042580:CDS
TATGCGTAAACGGTCGTTGG+TGG 0.488511 1_1:+73494046 None:intergenic
GCGTTCAAATACAAATGAAT+CGG 0.488677 1_1:+73493011 None:intergenic
ACTGGATCACCGGTTGGGTA+AGG 0.488939 1_1:+73493200 None:intergenic
TGGTATCATGATCATGCTAT+GGG 0.489530 1_1:-73493713 Msa0042580:CDS
ACACTTGATAAATCAACAAT+CGG 0.492745 1_1:+73493086 None:intergenic
TGAAGGGTCGCGAATGATGT+AGG 0.499265 1_1:+73493652 None:intergenic
TCAATGAAGTGGGGATAGTT+GGG 0.499761 1_1:+73493906 None:intergenic
ATTCGATCGTAGCTTTAAAA+CGG 0.500286 1_1:-73493573 Msa0042580:CDS
TTGATATTGCTTGGAATAGA+CGG 0.502899 1_1:-73492027 Msa0042580:three_prime_UTR
CCAACAATCGAAGCCCTCAA+TGG 0.506441 1_1:-73493989 Msa0042580:CDS
ATACATACCAATGCAACGTA+TGG 0.508861 1_1:-73492672 Msa0042580:CDS
CTGATTCTGCAATCTTCAGA+AGG 0.509527 1_1:-73491982 Msa0042580:three_prime_UTR
GCAGCTTATCCTTACCCAAC+CGG 0.511134 1_1:-73493209 Msa0042580:CDS
CATGGGAGTATGTGATTTGG+AGG 0.511892 1_1:+73493932 None:intergenic
CGTGTGTAGTGAAGTTGATC+AGG 0.516280 1_1:-73491873 Msa0042580:three_prime_UTR
TGGCATGTTCAAGAAGAAAT+GGG 0.517657 1_1:-73496399 Msa0042580:intron
TGGGGATAGTTGGGTCCCAT+GGG 0.525794 1_1:+73493915 None:intergenic
GGTTACAGAAATTGCGAAAG+TGG 0.529348 1_1:-73492970 Msa0042580:CDS
AGCAAAGCTACACAGTTCAT+AGG 0.530126 1_1:-73492242 Msa0042580:three_prime_UTR
CTCCAAATCACATACTCCCA+TGG 0.532484 1_1:-73493931 Msa0042580:CDS
ATCAACAAACATCTTCAGCT+TGG 0.534688 1_1:+73496496 None:intergenic
TCATCAACTGGATCACCGGT+TGG 0.535108 1_1:+73493194 None:intergenic
TGCACGTGGGAAGAAAGTTA+AGG 0.536279 1_1:-73492778 Msa0042580:CDS
AGTTTCATCAACTGGATCAC+CGG 0.536991 1_1:+73493190 None:intergenic
ATCAAACCCATACGTTGCAT+TGG 0.538238 1_1:+73492665 None:intergenic
TGATGATGATGATGTTGATA+AGG 0.538988 1_1:+73496547 None:intergenic
GTATGGGTTTGATGCAACTA+AGG 0.543489 1_1:-73492655 Msa0042580:CDS
ACCTTACAATAAGGTAGCGA+TGG 0.548168 1_1:-73496627 Msa0042580:exon
AACTACAGTGGGAATACCAT+TGG 0.548211 1_1:+73493874 None:intergenic
TTCTAAACACCATTCGTCAA+GGG 0.549756 1_1:-73491912 Msa0042580:three_prime_UTR
TCTAAACACCATTCGTCAAG+GGG 0.549913 1_1:-73491911 Msa0042580:three_prime_UTR
AGGTTCCTGATTATGAGAAA+GGG 0.549939 1_1:-73492758 Msa0042580:CDS
AATCACATACCACACCTCAC+TGG 0.559642 1_1:+73492944 None:intergenic
AGTTGATGAAACTAGTGGTA+AGG 0.560599 1_1:-73493180 Msa0042580:CDS
CGCGAAACCTTATGAAGCAC+CGG 0.561477 1_1:-73492991 Msa0042580:CDS
GCCCAAAGTCTATGGCTACA+AGG 0.562188 1_1:-73496459 Msa0042580:CDS
ATCGCTACCTTATTGTAAGG+TGG 0.562848 1_1:+73496629 None:intergenic
AATGTGTTTAAGATGAGACC+TGG 0.563487 1_1:-73492729 Msa0042580:CDS
AGGGCTTCGATTGTTGGACC+AGG 0.563868 1_1:+73493995 None:intergenic
ATTCTGATTCGGAGATTGCG+TGG 0.566742 1_1:+73496779 None:intergenic
TCATTGTAAACGGTAAAGCT+TGG 0.568812 1_1:-73493469 Msa0042580:CDS
AAACCCAAATGAATATGAAG+TGG 0.568961 1_1:+73492900 None:intergenic
ATGCGTAAACGGTCGTTGGT+GGG 0.572265 1_1:+73494047 None:intergenic
ACCGCTGGATTCAAAATCAA+GGG 0.573346 1_1:-73493794 Msa0042580:CDS
ACGGATACCGGAAAAGCTTG+TGG 0.573498 1_1:-73493114 Msa0042580:CDS
GTTACAGAAATTGCGAAAGT+GGG 0.575845 1_1:-73492969 Msa0042580:CDS
TTAGTGGTGATTCGATTGAA+GGG 0.576663 1_1:+73493636 None:intergenic
AGACTTTGGGCATATTAGGA+AGG 0.581208 1_1:+73496471 None:intergenic
ATTCATGAACCCGAAAGCGA+TGG 0.581864 1_1:-73493836 Msa0042580:CDS
CCGTATGCGTAAACGGTCGT+TGG 0.582812 1_1:+73494043 None:intergenic
CTTCACTTGATCATCTTCAA+GGG 0.582949 1_1:+73492481 None:intergenic
TTCTGATTCGGAGATTGCGT+GGG 0.582977 1_1:+73496780 None:intergenic
TACATACCAATGCAACGTAT+GGG 0.583012 1_1:-73492671 Msa0042580:CDS
TATCAAGTGTGACGCGCACA+CGG 0.586422 1_1:-73493073 Msa0042580:CDS
TCCAAATCACATACTCCCAT+GGG 0.586864 1_1:-73493930 Msa0042580:CDS
TCAAAATCAAGGGACCCACT+TGG 0.588153 1_1:-73493784 Msa0042580:CDS
CATGATACCATAAATTTCCA+GGG 0.588834 1_1:+73493726 None:intergenic
ATAACGTCTGTGATCTCAGA+TGG 0.593919 1_1:+73493281 None:intergenic
GCCAGCTAGAAGGTTGACTC+TGG 0.594113 1_1:+73493685 None:intergenic
TCATCAATGCAAGTAACGCT+AGG 0.595248 1_1:-73493406 Msa0042580:CDS
TTCCTGATTATGAGAAAGGG+TGG 0.596715 1_1:-73492755 Msa0042580:CDS
ATTCTAAACACCATTCGTCA+AGG 0.599748 1_1:-73491913 Msa0042580:three_prime_UTR
TGATTCTGCAATCTTCAGAA+GGG 0.604374 1_1:-73491981 Msa0042580:three_prime_UTR
TGCCACTGTGGATGAATCGT+AGG 0.604393 1_1:+73493515 None:intergenic
ATAAAGAAGTTGACACGTCA+CGG 0.605318 1_1:-73493133 Msa0042580:CDS
TCATTGACCAAAACAACCAA+TGG 0.609702 1_1:-73493890 Msa0042580:CDS
GCTACTTTCTTGTAAACACT+CGG 0.610756 1_1:-73492266 Msa0042580:three_prime_UTR
CACGTGGATGAGCATGCACG+TGG 0.614681 1_1:-73492792 Msa0042580:CDS
CCGTGGAGATGAACTACAGT+GGG 0.615840 1_1:+73493863 None:intergenic
GTGAGTAATGAAACTCTTGT+GGG 0.617633 1_1:-73493305 Msa0042580:CDS
GAATCTCCACACACGTGACG+TGG 0.619087 1_1:-73493967 Msa0042580:CDS
GATCGTAGCTTTAAAACGGA+CGG 0.621074 1_1:-73493569 Msa0042580:CDS
ATGTGTTTAAGATGAGACCT+GGG 0.622195 1_1:-73492728 Msa0042580:CDS
ATCGTTGAATACATATCGAA+CGG 0.625734 1_1:-73496758 Msa0042580:five_prime_UTR
ACAATCTTTGTAACAAACCC+AGG 0.627391 1_1:+73492711 None:intergenic
AACCCAAATGAATATGAAGT+GGG 0.627966 1_1:+73492901 None:intergenic
AAAATGGCATACATATGATG+TGG 0.628527 1_1:-73492299 Msa0042580:three_prime_UTR
TGTGAGTAATGAAACTCTTG+TGG 0.629319 1_1:-73493306 Msa0042580:CDS
CCCACTGTAGTTCATCTCCA+CGG 0.633373 1_1:-73493863 Msa0042580:CDS
GCCACTGTGGATGAATCGTA+GGG 0.636004 1_1:+73493516 None:intergenic
TATCCAAATAATCAACACCC+TGG 0.637082 1_1:-73493743 Msa0042580:CDS
AAATATTCTGGTTGCCACTG+TGG 0.640257 1_1:+73493503 None:intergenic
TGACTGAGAGCAAATTTGTG+AGG 0.641039 1_1:+73491945 None:intergenic
CACGTGCATGCTCATCCACG+TGG 0.643363 1_1:+73492793 None:intergenic
AAGTGGGGTCCAGTGAGGTG+TGG 0.652065 1_1:-73492953 Msa0042580:CDS
GATCCAGTTGATGAAACTAG+TGG 0.655275 1_1:-73493185 Msa0042580:CDS
AAGTAAATATATGCATACAC+AGG 0.662969 1_1:-73492202 Msa0042580:three_prime_UTR
TGGTTTAAGATTTGTACACG+TGG 0.663606 1_1:-73493360 Msa0042580:CDS
ATGGGAGTATGTGATTTGGA+GGG 0.668212 1_1:+73493933 None:intergenic
TTACAGAAATTGCGAAAGTG+GGG 0.671324 1_1:-73492968 Msa0042580:CDS
CGTGTGTGGAGATTCCATTG+AGG 0.674486 1_1:+73493975 None:intergenic
TGCGAAAGTGGGGTCCAGTG+AGG 0.677654 1_1:-73492958 Msa0042580:CDS
CTACGATCGAATAACATCAA+CGG 0.684384 1_1:+73493584 None:intergenic
TAAACACCATTCGTCAAGGG+GGG 0.690000 1_1:-73491909 Msa0042580:three_prime_UTR
CTAAACACCATTCGTCAAGG+GGG 0.692297 1_1:-73491910 Msa0042580:three_prime_UTR
CGACGTCGTACCGTTAAACG+TGG 0.694589 1_1:+73493446 None:intergenic
CGGGTTCATGAATTCCACCG+TGG 0.697997 1_1:+73493846 None:intergenic
TCGTTGGTGGGAGATCTCTG+TGG 0.702433 1_1:+73494059 None:intergenic
GTGTAGTGAAGTTGATCAGG+TGG 0.707288 1_1:-73491870 Msa0042580:three_prime_UTR
ACCGTGGAGATGAACTACAG+TGG 0.716142 1_1:+73493862 None:intergenic
AAATCGAATTCGTTACCGTG+TGG 0.717800 1_1:+73493608 None:intergenic
TCACCACTAAAATTACCACA+CGG 0.733048 1_1:-73493623 Msa0042580:CDS
TGAGTAATGAAACTCTTGTG+GGG 0.737873 1_1:-73493304 Msa0042580:CDS
ACCCTACGATTCATCCACAG+TGG 0.754604 1_1:-73493517 Msa0042580:CDS
TGATGCTGTGAAGTGCCACG+TGG 0.762196 1_1:-73492808 Msa0042580:CDS
ACTGTAGTTCATCTCCACGG+TGG 0.766322 1_1:-73493860 Msa0042580:CDS
ACGTGGATGAGCATGCACGT+GGG 0.795561 1_1:-73492791 Msa0042580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAATGTAAAAATTTAATA+TGG + chr1_1:73492555-73492574 None:intergenic 10.0%
!!! CATATTTAAATATTTTTCAT+TGG - chr1_1:73493312-73493331 Msa0042580:CDS 10.0%
!! TAATAAATAATAATCAATCA+TGG + chr1_1:73493659-73493678 None:intergenic 10.0%
!!! ACTCATTTATTATATTTTTA+AGG - chr1_1:73493982-73494001 Msa0042580:CDS 10.0%
!!! CATTTTACTTTTTTAAACAT+GGG + chr1_1:73493177-73493196 None:intergenic 15.0%
!!! ACATTTTACTTTTTTAAACA+TGG + chr1_1:73493178-73493197 None:intergenic 15.0%
!!! ATTTTTAGAAATATCTCTTT+AGG - chr1_1:73493512-73493531 Msa0042580:CDS 15.0%
!!! TTTTTAGAAATATCTCTTTA+GGG - chr1_1:73493513-73493532 Msa0042580:CDS 15.0%
!! AAATATAATAAATGAGTTTG+AGG + chr1_1:73493979-73493998 None:intergenic 15.0%
!! GTAGAATTAAAATTAAACAA+TGG + chr1_1:73494355-73494374 None:intergenic 15.0%
!!! TATGAAATTTGTAATTTTAC+CGG - chr1_1:73495419-73495438 Msa0042580:intron 15.0%
!! AGTAATATAAAGAGAGAAAA+AGG + chr1_1:73491915-73491934 None:intergenic 20.0%
!! TATCTAAATTAAAAAAACCC+AGG + chr1_1:73492446-73492465 None:intergenic 20.0%
!! TAGATAACTTTCTTTCTTAT+TGG - chr1_1:73492460-73492479 Msa0042580:three_prime_UTR 20.0%
!! AGTTCAATCAAAATAGTTAA+TGG - chr1_1:73492520-73492539 Msa0042580:intron 20.0%
!!! ATTGATTTTATCTTCCAAAA+AGG + chr1_1:73492698-73492717 None:intergenic 20.0%
!!! TATTACTCATTTTTACAAGT+GGG + chr1_1:73493254-73493273 None:intergenic 20.0%
!!! AGAGATATTTCTAAAAATAG+TGG + chr1_1:73493510-73493529 None:intergenic 20.0%
!!! AATTTTAGGAATGAAATCTA+AGG + chr1_1:73493883-73493902 None:intergenic 20.0%
!! AAAAAATAAGACAAAGGAAA+AGG - chr1_1:73494117-73494136 Msa0042580:intron 20.0%
!! AATATCTACATCAAAATTGA+AGG + chr1_1:73496046-73496065 None:intergenic 20.0%
!!! TTCAATTTTGATGTAGATAT+TGG - chr1_1:73496045-73496064 Msa0042580:intron 20.0%
!! AAAACATAAGAAACAAATGT+AGG + chr1_1:73496208-73496227 None:intergenic 20.0%
!!! TCATAATTTGTCTAAAATTG+TGG - chr1_1:73496404-73496423 Msa0042580:CDS 20.0%
!!! AGATTAATTGCATTTGTTTT+TGG - chr1_1:73496467-73496486 Msa0042580:CDS 20.0%
!!! AGTGTAGTTTTTTTTTTTGT+TGG - chr1_1:73496766-73496785 Msa0042580:five_prime_UTR 20.0%
!!! GTGTAGTTTTTTTTTTTGTT+GGG - chr1_1:73496767-73496786 Msa0042580:five_prime_UTR 20.0%
!!! TGTAGTTTTTTTTTTTGTTG+GGG - chr1_1:73496768-73496787 Msa0042580:five_prime_UTR 20.0%
! AATAAAGACAACACAATAAG+CGG + chr1_1:73492251-73492270 None:intergenic 25.0%
! AAACAAGTAAAGCATGAATT+TGG + chr1_1:73492282-73492301 None:intergenic 25.0%
!! ATCTCTAGATAATTTTTCTG+TGG - chr1_1:73492382-73492401 Msa0042580:intron 25.0%
!!! AAATGTTAACTTGTTCTCTT+GGG + chr1_1:73492593-73492612 None:intergenic 25.0%
!!! AAAATGTTAACTTGTTCTCT+TGG + chr1_1:73492594-73492613 None:intergenic 25.0%
! ATTTATTACACATGAAGAGA+AGG - chr1_1:73492644-73492663 Msa0042580:CDS 25.0%
! TTCCATAAACATTGTGTTTA+CGG + chr1_1:73492723-73492742 None:intergenic 25.0%
!! TGAAAGTGACTTATTTCTTT+GGG + chr1_1:73492978-73492997 None:intergenic 25.0%
!! TTGAAAGTGACTTATTTCTT+TGG + chr1_1:73492979-73492998 None:intergenic 25.0%
! AAAGTAAAATGTGTACTACT+TGG - chr1_1:73493186-73493205 Msa0042580:CDS 25.0%
! TATTACTTCTTTATGCAAGT+GGG + chr1_1:73493213-73493232 None:intergenic 25.0%
! TTATTACTTCTTTATGCAAG+TGG + chr1_1:73493214-73493233 None:intergenic 25.0%
! GTAATAAAATGTGTACTACT+TGG - chr1_1:73493227-73493246 Msa0042580:CDS 25.0%
!!! CTATTACTCATTTTTACAAG+TGG + chr1_1:73493255-73493274 None:intergenic 25.0%
!!! AAGAAGGTACTGTAAATTTA+GGG + chr1_1:73493621-73493640 None:intergenic 25.0%
!!! AAAGAAGGTACTGTAAATTT+AGG + chr1_1:73493622-73493641 None:intergenic 25.0%
! TGTAAATTTGTAGCATTTGA+TGG + chr1_1:73493693-73493712 None:intergenic 25.0%
!!! AGTTGTCACTAAATTTTTAG+AGG - chr1_1:73493826-73493845 Msa0042580:CDS 25.0%
!!! ACTAAATTTTTAGAGGACAT+GGG - chr1_1:73493833-73493852 Msa0042580:CDS 25.0%
!!! ACATTTTTGGACAACTATAA+CGG - chr1_1:73493934-73493953 Msa0042580:CDS 25.0%
!! AATGATTTTGCAAATATTCG+TGG - chr1_1:73494052-73494071 Msa0042580:CDS 25.0%
! TGGAGAAAAAAATAAGACAA+AGG - chr1_1:73494111-73494130 Msa0042580:intron 25.0%
!! ATTTTTATAAAACACCCCTA+TGG - chr1_1:73494166-73494185 Msa0042580:intron 25.0%
! ATATTGTGATCAATACCATA+GGG + chr1_1:73494184-73494203 None:intergenic 25.0%
! AATATTGTGATCAATACCAT+AGG + chr1_1:73494185-73494204 None:intergenic 25.0%
!!! TATGGTATTGATCACAATAT+TGG - chr1_1:73494184-73494203 Msa0042580:intron 25.0%
! ACACTTGATAAATCAACAAT+CGG + chr1_1:73495492-73495511 None:intergenic 25.0%
!! TATTCATTTGGGTTTGTTTA+AGG - chr1_1:73495683-73495702 Msa0042580:intron 25.0%
!! TTGTTACAAAGATTGTTGTT+AGG - chr1_1:73495871-73495890 Msa0042580:intron 25.0%
! AGAGTCAACAATGATAATAT+AGG - chr1_1:73496128-73496147 Msa0042580:intron 25.0%
! AAGTAAATATATGCATACAC+AGG - chr1_1:73496373-73496392 Msa0042580:intron 25.0%
!!! ATTTGTTTTTGGTCGAATTT+GGG - chr1_1:73496478-73496497 Msa0042580:CDS 25.0%
!!! ACCTCAATTTTGTTTTTCTA+TGG - chr1_1:73496738-73496757 Msa0042580:five_prime_UTR 25.0%
! ACCATAGAAAAACAAAATTG+AGG + chr1_1:73496742-73496761 None:intergenic 25.0%
TGTATTCAACGATTCTGATT+CGG + chr1_1:73491810-73491829 None:intergenic 30.0%
ATCGTTGAATACATATCGAA+CGG - chr1_1:73491817-73491836 Msa0042580:three_prime_UTR 30.0%
! TGATGATGATGATGTTGATA+AGG + chr1_1:73492031-73492050 None:intergenic 30.0%
! ATCTTGAGAGACTTTGATTT+GGG + chr1_1:73492156-73492175 None:intergenic 30.0%
AATCTTGAGAGACTTTGATT+TGG + chr1_1:73492157-73492176 None:intergenic 30.0%
AAATCAAAGTCTCTCAAGAT+TGG - chr1_1:73492156-73492175 Msa0042580:three_prime_UTR 30.0%
ATCCTAAGATTCATGAACTT+TGG + chr1_1:73492318-73492337 None:intergenic 30.0%
AATACAAAGTTTCTGATACC+TGG - chr1_1:73492425-73492444 Msa0042580:intron 30.0%
ATACAAAGTTTCTGATACCT+GGG - chr1_1:73492426-73492445 Msa0042580:intron 30.0%
!! AATGTTAACTTGTTCTCTTG+GGG + chr1_1:73492592-73492611 None:intergenic 30.0%
!!! TTTTTTGCATTTGTCACTGA+AGG + chr1_1:73492948-73492967 None:intergenic 30.0%
! AGTACCTTCTTTTCTCAATA+AGG - chr1_1:73493630-73493649 Msa0042580:CDS 30.0%
TTTGTAGCATTTGATGGAAA+AGG + chr1_1:73493687-73493706 None:intergenic 30.0%
GTTATAGTTGATTATGCATC+TGG + chr1_1:73493777-73493796 None:intergenic 30.0%
!! CACTAAATTTTTAGAGGACA+TGG - chr1_1:73493832-73493851 Msa0042580:CDS 30.0%
! TGAAGAAAGTATAGAACCTT+GGG + chr1_1:73494027-73494046 None:intergenic 30.0%
! TTGAAGAAAGTATAGAACCT+TGG + chr1_1:73494028-73494047 None:intergenic 30.0%
TATTGTGATCAATACCATAG+GGG + chr1_1:73494183-73494202 None:intergenic 30.0%
ATAATTCATTCACCAACTAG+TGG - chr1_1:73494213-73494232 Msa0042580:intron 30.0%
!!! TAAGATCTTTTTAGAGCTTG+TGG + chr1_1:73494240-73494259 None:intergenic 30.0%
AATTAAACAATGGTCCAAAG+TGG + chr1_1:73494345-73494364 None:intergenic 30.0%
GCATTATAGAAAACAAGTTG+TGG + chr1_1:73494489-73494508 None:intergenic 30.0%
!!! TATGACTTTTTTGTCCAAGT+GGG + chr1_1:73494808-73494827 None:intergenic 30.0%
!!! ATATGACTTTTTTGTCCAAG+TGG + chr1_1:73494809-73494828 None:intergenic 30.0%
CATGATACCATAAATTTCCA+GGG + chr1_1:73494852-73494871 None:intergenic 30.0%
TCATGATACCATAAATTTCC+AGG + chr1_1:73494853-73494872 None:intergenic 30.0%
!! ATTCGATCGTAGCTTTAAAA+CGG - chr1_1:73495002-73495021 Msa0042580:intron 30.0%
! TCGATTTTCATGAATTCAAC+TGG - chr1_1:73495030-73495049 Msa0042580:intron 30.0%
! CGATTTTCATGAATTCAACT+GGG - chr1_1:73495031-73495050 Msa0042580:intron 30.0%
!!! TTTAGACTCTTTTTCAGCAA+TGG - chr1_1:73495195-73495214 Msa0042580:intron 30.0%
CATCTGATTCTGCTTATATT+GGG - chr1_1:73495238-73495257 Msa0042580:intron 30.0%
GCGTTCAAATACAAATGAAT+CGG + chr1_1:73495567-73495586 None:intergenic 30.0%
AACCCAAATGAATATGAAGT+GGG + chr1_1:73495677-73495696 None:intergenic 30.0%
AAACCCAAATGAATATGAAG+TGG + chr1_1:73495678-73495697 None:intergenic 30.0%
!! TTTGGGTTTGTTTAAGGTTT+TGG - chr1_1:73495689-73495708 Msa0042580:intron 30.0%
GGTGAAATCTGATGAATTTA+AGG - chr1_1:73495725-73495744 Msa0042580:intron 30.0%
TCATCATAGCATTATCTTCA+TGG + chr1_1:73496072-73496091 None:intergenic 30.0%
!! TTATCATTGTTGACTCTCAT+TGG + chr1_1:73496125-73496144 None:intergenic 30.0%
ACAGATTGAACTTGTATTGT+AGG - chr1_1:73496253-73496272 Msa0042580:intron 30.0%
GAACTTGTATTGTAGGAAAA+TGG - chr1_1:73496260-73496279 Msa0042580:intron 30.0%
!!! CATTTGTTTTTGGTCGAATT+TGG - chr1_1:73496477-73496496 Msa0042580:CDS 30.0%
! TTTGGGTTCTTGTAATATAG+TGG - chr1_1:73496495-73496514 Msa0042580:CDS 30.0%
CTATGAGAATTGATATTGCT+TGG - chr1_1:73496539-73496558 Msa0042580:CDS 30.0%
TTGATATTGCTTGGAATAGA+CGG - chr1_1:73496548-73496567 Msa0042580:CDS 30.0%
CAGTGAGAACTCAAAACAAT+AGG + chr1_1:73491883-73491902 None:intergenic 35.0%
CTCAAATCCACCTTACAATA+AGG - chr1_1:73491939-73491958 Msa0042580:three_prime_UTR 35.0%
ATCAACAAACATCTTCAGCT+TGG + chr1_1:73492082-73492101 None:intergenic 35.0%
TTGGCATGTTCAAGAAGAAA+TGG - chr1_1:73492175-73492194 Msa0042580:three_prime_UTR 35.0%
TGGCATGTTCAAGAAGAAAT+GGG - chr1_1:73492176-73492195 Msa0042580:three_prime_UTR 35.0%
CATGCTTTACTTGTTTCGAT+AGG - chr1_1:73492286-73492305 Msa0042580:three_prime_UTR 35.0%
GACCAAAGTTCATGAATCTT+AGG - chr1_1:73492313-73492332 Msa0042580:intron 35.0%
CTCCGTAAACACAATGTTTA+TGG - chr1_1:73492718-73492737 Msa0042580:CDS 35.0%
! ATTTTTCTTCCTCCAATGGA+GGG + chr1_1:73493090-73493109 None:intergenic 35.0%
! AATTTTTCTTCCTCCAATGG+AGG + chr1_1:73493091-73493110 None:intergenic 35.0%
! CTCAATTTTTCTTCCTCCAA+TGG + chr1_1:73493094-73493113 None:intergenic 35.0%
TATAGTTGTCCGTTCCTTAA+CGG + chr1_1:73493120-73493139 None:intergenic 35.0%
AAGGAACGGACAACTATATA+AGG - chr1_1:73493122-73493141 Msa0042580:CDS 35.0%
CCAATGGCAATACACTAATA+AGG + chr1_1:73493341-73493360 None:intergenic 35.0%
CCTTATTAGTGTATTGCCAT+TGG - chr1_1:73493338-73493357 Msa0042580:CDS 35.0%
TAAGAACTCAATGACTCCAA+TGG + chr1_1:73493357-73493376 None:intergenic 35.0%
GGAGTCATTGAGTTCTTAAT+AGG - chr1_1:73493359-73493378 Msa0042580:CDS 35.0%
CATTTAAGGAGTCCTTGTTA+GGG - chr1_1:73493428-73493447 Msa0042580:CDS 35.0%
GCTACCTTATTGAGAAAAGA+AGG + chr1_1:73493637-73493656 None:intergenic 35.0%
AAGGAACTCTGCTTAAAAGA+AGG + chr1_1:73493719-73493738 None:intergenic 35.0%
ACTATAACGGTTGTTCCAAA+CGG - chr1_1:73493947-73493966 Msa0042580:CDS 35.0%
AGTTTGAGGAAATTACCGTT+TGG + chr1_1:73493965-73493984 None:intergenic 35.0%
TTGGGTCATCAAAAAAGGAA+GGG + chr1_1:73494009-73494028 None:intergenic 35.0%
TGGATGACACTAAAAAGGTT+GGG + chr1_1:73494283-73494302 None:intergenic 35.0%
GGAGAATGAGTTATCACTAT+CGG + chr1_1:73494324-73494343 None:intergenic 35.0%
TGATAACTCATTCTCCACTT+TGG - chr1_1:73494328-73494347 Msa0042580:intron 35.0%
GTTTAATCCGTATGCGTAAA+CGG + chr1_1:73494542-73494561 None:intergenic 35.0%
AAACACAAAGCAACAATTCC+TGG - chr1_1:73494562-73494581 Msa0042580:intron 35.0%
!!! TTGTTTTGGTCAATGAAGTG+GGG + chr1_1:73494681-73494700 None:intergenic 35.0%
!!! GTTGTTTTGGTCAATGAAGT+GGG + chr1_1:73494682-73494701 None:intergenic 35.0%
TCATTGACCAAAACAACCAA+TGG - chr1_1:73494685-73494704 Msa0042580:intron 35.0%
TATCCAAATAATCAACACCC+TGG - chr1_1:73494832-73494851 Msa0042580:intron 35.0%
!! TTTCCAGGGTGTTGATTATT+TGG + chr1_1:73494838-73494857 None:intergenic 35.0%
ATCAACACCCTGGAAATTTA+TGG - chr1_1:73494842-73494861 Msa0042580:intron 35.0%
ATGGTATCATGATCATGCTA+TGG - chr1_1:73494861-73494880 Msa0042580:intron 35.0%
TGGTATCATGATCATGCTAT+GGG - chr1_1:73494862-73494881 Msa0042580:intron 35.0%
TTAGTGGTGATTCGATTGAA+GGG + chr1_1:73494942-73494961 None:intergenic 35.0%
TTTAGTGGTGATTCGATTGA+AGG + chr1_1:73494943-73494962 None:intergenic 35.0%
TCACCACTAAAATTACCACA+CGG - chr1_1:73494952-73494971 Msa0042580:intron 35.0%
! TTACCGTGTGGTAATTTTAG+TGG + chr1_1:73494958-73494977 None:intergenic 35.0%
CTACGATCGAATAACATCAA+CGG + chr1_1:73494994-73495013 None:intergenic 35.0%
ATTGCGTCACCAAAATATTC+TGG + chr1_1:73495087-73495106 None:intergenic 35.0%
TCATTGTAAACGGTAAAGCT+TGG - chr1_1:73495106-73495125 Msa0042580:intron 35.0%
! TGGTTTAAGATTTGTACACG+TGG - chr1_1:73495215-73495234 Msa0042580:intron 35.0%
GCATCTGATTCTGCTTATAT+TGG - chr1_1:73495237-73495256 Msa0042580:intron 35.0%
AGAGTTTCATTACTCACAAC+TGG + chr1_1:73495267-73495286 None:intergenic 35.0%
TGTGAGTAATGAAACTCTTG+TGG - chr1_1:73495269-73495288 Msa0042580:intron 35.0%
GTGAGTAATGAAACTCTTGT+GGG - chr1_1:73495270-73495289 Msa0042580:intron 35.0%
TGAGTAATGAAACTCTTGTG+GGG - chr1_1:73495271-73495290 Msa0042580:intron 35.0%
! TTACCACTAGTTTCATCAAC+TGG + chr1_1:73495396-73495415 None:intergenic 35.0%
!! AGTTGATGAAACTAGTGGTA+AGG - chr1_1:73495395-73495414 Msa0042580:intron 35.0%
ATAAAGAAGTTGACACGTCA+CGG - chr1_1:73495442-73495461 Msa0042580:intron 35.0%
ACTTTCGCAATTTCTGTAAC+CGG + chr1_1:73495606-73495625 None:intergenic 35.0%
GTTACAGAAATTGCGAAAGT+GGG - chr1_1:73495606-73495625 Msa0042580:intron 35.0%
TTACAGAAATTGCGAAAGTG+GGG - chr1_1:73495607-73495626 Msa0042580:intron 35.0%
TCACCCACTTCATATTCATT+TGG - chr1_1:73495671-73495690 Msa0042580:intron 35.0%
CACCCACTTCATATTCATTT+GGG - chr1_1:73495672-73495691 Msa0042580:intron 35.0%
!!! GTTTAAGGTTTTGGATCAGA+CGG - chr1_1:73495698-73495717 Msa0042580:intron 35.0%
AAGGTTCCTGATTATGAGAA+AGG - chr1_1:73495816-73495835 Msa0042580:intron 35.0%
AGGTTCCTGATTATGAGAAA+GGG - chr1_1:73495817-73495836 Msa0042580:intron 35.0%
! AATGTGTTTAAGATGAGACC+TGG - chr1_1:73495846-73495865 Msa0042580:intron 35.0%
! ATGTGTTTAAGATGAGACCT+GGG - chr1_1:73495847-73495866 Msa0042580:intron 35.0%
ACAATCTTTGTAACAAACCC+AGG + chr1_1:73495867-73495886 None:intergenic 35.0%
ATACATACCAATGCAACGTA+TGG - chr1_1:73495903-73495922 Msa0042580:intron 35.0%
TACATACCAATGCAACGTAT+GGG - chr1_1:73495904-73495923 Msa0042580:intron 35.0%
CTTCACTTGATCATCTTCAA+GGG + chr1_1:73496097-73496116 None:intergenic 35.0%
!!! GTATAAATGCATGTTTTGGC+TGG + chr1_1:73496182-73496201 None:intergenic 35.0%
! GCACGTATAAATGCATGTTT+TGG + chr1_1:73496186-73496205 None:intergenic 35.0%
! GCTACTTTCTTGTAAACACT+CGG - chr1_1:73496309-73496328 Msa0042580:intron 35.0%
TGATTCTGCAATCTTCAGAA+GGG - chr1_1:73496594-73496613 Msa0042580:CDS 35.0%
ATTCTAAACACCATTCGTCA+AGG - chr1_1:73496662-73496681 Msa0042580:five_prime_UTR 35.0%
TTCTAAACACCATTCGTCAA+GGG - chr1_1:73496663-73496682 Msa0042580:five_prime_UTR 35.0%
TGTTGGGGATTTAGTAAGTT+TGG - chr1_1:73496783-73496802 Msa0042580:five_prime_UTR 35.0%
ATCGCTACCTTATTGTAAGG+TGG + chr1_1:73491949-73491968 None:intergenic 40.0%
ACCTTACAATAAGGTAGCGA+TGG - chr1_1:73491948-73491967 Msa0042580:three_prime_UTR 40.0%
TCCATCGCTACCTTATTGTA+AGG + chr1_1:73491952-73491971 None:intergenic 40.0%
AGACTTTGGGCATATTAGGA+AGG + chr1_1:73492107-73492126 None:intergenic 40.0%
CCATAGACTTTGGGCATATT+AGG + chr1_1:73492111-73492130 None:intergenic 40.0%
CCTAATATGCCCAAAGTCTA+TGG - chr1_1:73492108-73492127 Msa0042580:three_prime_UTR 40.0%
ACCTTGTAGCCATAGACTTT+GGG + chr1_1:73492120-73492139 None:intergenic 40.0%
AACCTTGTAGCCATAGACTT+TGG + chr1_1:73492121-73492140 None:intergenic 40.0%
TATGGCTACAAGGTTGTAGA+TGG - chr1_1:73492126-73492145 Msa0042580:three_prime_UTR 40.0%
TTCTCTTGGGGCATAAGTTA+AGG + chr1_1:73492580-73492599 None:intergenic 40.0%
AACCACATGATTGAGTCGTT+GGG + chr1_1:73493007-73493026 None:intergenic 40.0%
AAACCACATGATTGAGTCGT+TGG + chr1_1:73493008-73493027 None:intergenic 40.0%
! TTCCTTAGAGCATCTCCAAT+AGG - chr1_1:73493027-73493046 Msa0042580:CDS 40.0%
! TCCTTAGAGCATCTCCAATA+GGG - chr1_1:73493028-73493047 Msa0042580:CDS 40.0%
GAAAAATTGAGTCCCCGTTA+AGG - chr1_1:73493103-73493122 Msa0042580:CDS 40.0%
ATAGTTGTCCGTTCCTTAAC+GGG + chr1_1:73493119-73493138 None:intergenic 40.0%
TCTCTCTCCTGAGTAACTAA+CGG - chr1_1:73493149-73493168 Msa0042580:CDS 40.0%
AATAAGTGATGTGTCACGTG+AGG - chr1_1:73493403-73493422 Msa0042580:CDS 40.0%
CCTAACAAGGACTCCTTAAA+TGG + chr1_1:73493430-73493449 None:intergenic 40.0%
CCATTTAAGGAGTCCTTGTT+AGG - chr1_1:73493427-73493446 Msa0042580:CDS 40.0%
ACAATGGTAGTTCCCTAACA+AGG + chr1_1:73493443-73493462 None:intergenic 40.0%
TTGTTAGGGAACTACCATTG+TGG - chr1_1:73493442-73493461 Msa0042580:CDS 40.0%
! TCGTATTAGAGCATCCACAA+TGG + chr1_1:73493459-73493478 None:intergenic 40.0%
TCGTAAATCAATCATGGGCA+TGG + chr1_1:73493486-73493505 None:intergenic 40.0%
GTGGCTCGTAAATCAATCAT+GGG + chr1_1:73493491-73493510 None:intergenic 40.0%
AGTGGCTCGTAAATCAATCA+TGG + chr1_1:73493492-73493511 None:intergenic 40.0%
ACCCAAATGCCAGTTTGTAA+AGG - chr1_1:73493744-73493763 Msa0042580:CDS 40.0%
CCCTTTACAAACTGGCATTT+GGG + chr1_1:73493748-73493767 None:intergenic 40.0%
CCCAAATGCCAGTTTGTAAA+GGG - chr1_1:73493745-73493764 Msa0042580:CDS 40.0%
ACCCTTTACAAACTGGCATT+TGG + chr1_1:73493749-73493768 None:intergenic 40.0%
CATGGGAAAATGTTAGCTGT+AGG - chr1_1:73493850-73493869 Msa0042580:CDS 40.0%
! GCGTTTGGGCAATGAATTTT+AGG + chr1_1:73493897-73493916 None:intergenic 40.0%
CTTGGGTCATCAAAAAAGGA+AGG + chr1_1:73494010-73494029 None:intergenic 40.0%
!!! CTTCCTTTTTTGATGACCCA+AGG - chr1_1:73494008-73494027 Msa0042580:CDS 40.0%
GAACCTTGGGTCATCAAAAA+AGG + chr1_1:73494014-73494033 None:intergenic 40.0%
GATGACACTAAAAAGGTTGG+GGG + chr1_1:73494281-73494300 None:intergenic 40.0%
GGATGACACTAAAAAGGTTG+GGG + chr1_1:73494282-73494301 None:intergenic 40.0%
GTGGATGACACTAAAAAGGT+TGG + chr1_1:73494284-73494303 None:intergenic 40.0%
CTGAGTGGATGACACTAAAA+AGG + chr1_1:73494288-73494307 None:intergenic 40.0%
!! CTTTTTAGTGTCATCCACTC+AGG - chr1_1:73494286-73494305 Msa0042580:intron 40.0%
ATCACTATCGGTAAGTGTCA+AGG + chr1_1:73494312-73494331 None:intergenic 40.0%
! ATGGGAGTATGTGATTTGGA+GGG + chr1_1:73494645-73494664 None:intergenic 40.0%
TCCAAATCACATACTCCCAT+GGG - chr1_1:73494645-73494664 Msa0042580:intron 40.0%
TCAATGAAGTGGGGATAGTT+GGG + chr1_1:73494672-73494691 None:intergenic 40.0%
!!! GGTTGTTTTGGTCAATGAAG+TGG + chr1_1:73494683-73494702 None:intergenic 40.0%
!! GGGAATACCATTGGTTGTTT+TGG + chr1_1:73494695-73494714 None:intergenic 40.0%
AACTACAGTGGGAATACCAT+TGG + chr1_1:73494704-73494723 None:intergenic 40.0%
TTTGGATTTCCATCGCTTTC+GGG + chr1_1:73494751-73494770 None:intergenic 40.0%
GTTTGGATTTCCATCGCTTT+CGG + chr1_1:73494752-73494771 None:intergenic 40.0%
ACCGCTGGATTCAAAATCAA+GGG - chr1_1:73494781-73494800 Msa0042580:intron 40.0%
! TCCCTTGATTTTGAATCCAG+CGG + chr1_1:73494785-73494804 None:intergenic 40.0%
! AACCTTCTAGCTGGCTTAAT+TGG - chr1_1:73494898-73494917 Msa0042580:intron 40.0%
! ACCTTCTAGCTGGCTTAATT+GGG - chr1_1:73494899-73494918 Msa0042580:intron 40.0%
AAATCGAATTCGTTACCGTG+TGG + chr1_1:73494970-73494989 None:intergenic 40.0%
!! GATCGTAGCTTTAAAACGGA+CGG - chr1_1:73495006-73495025 Msa0042580:intron 40.0%
! AAATATTCTGGTTGCCACTG+TGG + chr1_1:73495075-73495094 None:intergenic 40.0%
! CAGTGGCAACCAGAATATTT+TGG - chr1_1:73495075-73495094 Msa0042580:intron 40.0%
GGTGACGCAATCATTGTAAA+CGG - chr1_1:73495096-73495115 Msa0042580:intron 40.0%
TAAAGCTTGGCCACGTTTAA+CGG - chr1_1:73495119-73495138 Msa0042580:intron 40.0%
TCATCAATGCAAGTAACGCT+AGG - chr1_1:73495169-73495188 Msa0042580:intron 40.0%
ATAACGTCTGTGATCTCAGA+TGG + chr1_1:73495297-73495316 None:intergenic 40.0%
AGTTTCATCAACTGGATCAC+CGG + chr1_1:73495388-73495407 None:intergenic 40.0%
!! GATCCAGTTGATGAAACTAG+TGG - chr1_1:73495390-73495409 Msa0042580:intron 40.0%
GACGTGTCAACTTCTTTATC+CGG + chr1_1:73495441-73495460 None:intergenic 40.0%
! GGATATTCCACAAGCTTTTC+CGG + chr1_1:73495471-73495490 None:intergenic 40.0%
GGTTACAGAAATTGCGAAAG+TGG - chr1_1:73495605-73495624 Msa0042580:intron 40.0%
TTCCTGATTATGAGAAAGGG+TGG - chr1_1:73495820-73495839 Msa0042580:intron 40.0%
TTCCACCCTTTCTCATAATC+AGG + chr1_1:73495825-73495844 None:intergenic 40.0%
ATCAAACCCATACGTTGCAT+TGG + chr1_1:73495913-73495932 None:intergenic 40.0%
GTATGGGTTTGATGCAACTA+AGG - chr1_1:73495920-73495939 Msa0042580:intron 40.0%
TTTGATGCAACTAAGGAGTC+TGG - chr1_1:73495927-73495946 Msa0042580:intron 40.0%
GCTTCACTTGATCATCTTCA+AGG + chr1_1:73496098-73496117 None:intergenic 40.0%
AGCAAAGCTACACAGTTCAT+AGG - chr1_1:73496333-73496352 Msa0042580:intron 40.0%
CTGATTCTGCAATCTTCAGA+AGG - chr1_1:73496593-73496612 Msa0042580:CDS 40.0%
TGACTGAGAGCAAATTTGTG+AGG + chr1_1:73496633-73496652 None:intergenic 40.0%
!!! TTTGCTCTCAGTCACTTTTC+TGG - chr1_1:73496639-73496658 Msa0042580:five_prime_UTR 40.0%
TCTAAACACCATTCGTCAAG+GGG - chr1_1:73496664-73496683 Msa0042580:five_prime_UTR 40.0%
!! TTCTGATTCGGAGATTGCGT+GGG + chr1_1:73491798-73491817 None:intergenic 45.0%
!! ATTCTGATTCGGAGATTGCG+TGG + chr1_1:73491799-73491818 None:intergenic 45.0%
! GTTGCGTCGCTAAACCTTTT+TGG - chr1_1:73492681-73492700 Msa0042580:CDS 45.0%
ACCACATGATTGAGTCGTTG+GGG + chr1_1:73493006-73493025 None:intergenic 45.0%
! CCTTAGAGCATCTCCAATAG+GGG - chr1_1:73493029-73493048 Msa0042580:CDS 45.0%
! CTTAGAGCATCTCCAATAGG+GGG - chr1_1:73493030-73493049 Msa0042580:CDS 45.0%
GTTAAGTAAGGACCCCCTAT+TGG + chr1_1:73493045-73493064 None:intergenic 45.0%
TAGGGGGTCCTTACTTAACA+AGG - chr1_1:73493046-73493065 Msa0042580:CDS 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG + chr1_1:73493057-73493076 None:intergenic 45.0%
ATTGAGTCCCCGTTAAGGAA+CGG - chr1_1:73493108-73493127 Msa0042580:CDS 45.0%
TAGTTGTCCGTTCCTTAACG+GGG + chr1_1:73493118-73493137 None:intergenic 45.0%
GTTAGTTACTCAGGAGAGAG+AGG + chr1_1:73493150-73493169 None:intergenic 45.0%
CTCTCTCCTGAGTAACTAAC+GGG - chr1_1:73493150-73493169 Msa0042580:CDS 45.0%
TGTCACGTGAGGTCCATTTA+AGG - chr1_1:73493414-73493433 Msa0042580:CDS 45.0%
ACTGGCATTTGGGTAGCTAA+AGG + chr1_1:73493738-73493757 None:intergenic 45.0%
! ACCTCTGGGCTACACATTTT+TGG - chr1_1:73493921-73493940 Msa0042580:CDS 45.0%
TCCAAAAATGTGTAGCCCAG+AGG + chr1_1:73493925-73493944 None:intergenic 45.0%
!! CGTGGTACTGATATCTCACA+TGG - chr1_1:73494070-73494089 Msa0042580:intron 45.0%
TCACATGGCATCCAAGTCAT+TGG - chr1_1:73494085-73494104 Msa0042580:intron 45.0%
TTTCTCCACAGCCAATGACT+TGG + chr1_1:73494099-73494118 None:intergenic 45.0%
GTGTGTGGAGATTCCATTGA+GGG + chr1_1:73494602-73494621 None:intergenic 45.0%
! CATGGGAGTATGTGATTTGG+AGG + chr1_1:73494646-73494665 None:intergenic 45.0%
CTCCAAATCACATACTCCCA+TGG - chr1_1:73494644-73494663 Msa0042580:intron 45.0%
! TCCCATGGGAGTATGTGATT+TGG + chr1_1:73494649-73494668 None:intergenic 45.0%
GTCAATGAAGTGGGGATAGT+TGG + chr1_1:73494673-73494692 None:intergenic 45.0%
ATTCATGAACCCGAAAGCGA+TGG - chr1_1:73494739-73494758 Msa0042580:intron 45.0%
CCAGCGGTGAAAAATGAGTT+TGG + chr1_1:73494769-73494788 None:intergenic 45.0%
!! CCAAACTCATTTTTCACCGC+TGG - chr1_1:73494766-73494785 Msa0042580:intron 45.0%
CACCGCTGGATTCAAAATCA+AGG - chr1_1:73494780-73494799 Msa0042580:intron 45.0%
TCAAAATCAAGGGACCCACT+TGG - chr1_1:73494791-73494810 Msa0042580:intron 45.0%
TCCCAATTAAGCCAGCTAGA+AGG + chr1_1:73494903-73494922 None:intergenic 45.0%
TCTGTAACCGGTGCTTCATA+AGG + chr1_1:73495594-73495613 None:intergenic 45.0%
AATCACATACCACACCTCAC+TGG + chr1_1:73495634-73495653 None:intergenic 45.0%
TGCACGTGGGAAGAAAGTTA+AGG - chr1_1:73495797-73495816 Msa0042580:intron 45.0%
CTAAACACCATTCGTCAAGG+GGG - chr1_1:73496665-73496684 Msa0042580:five_prime_UTR 45.0%
TAAACACCATTCGTCAAGGG+GGG - chr1_1:73496666-73496685 Msa0042580:five_prime_UTR 45.0%
AAATTACCCCCCTTGACGAA+TGG + chr1_1:73496675-73496694 None:intergenic 45.0%
! CGTGTGTAGTGAAGTTGATC+AGG - chr1_1:73496702-73496721 Msa0042580:five_prime_UTR 45.0%
! GTGTAGTGAAGTTGATCAGG+TGG - chr1_1:73496705-73496724 Msa0042580:five_prime_UTR 45.0%
!! ATATAATTATGTTATAATTA+AGG + chr1_1:73492617-73492636 None:intergenic 5.0%
!!! AATTAAAATAAGTTTTTTTT+TGG - chr1_1:73492762-73492781 Msa0042580:CDS 5.0%
!!! ATATATATTATTTTTTTAGA+TGG - chr1_1:73492906-73492925 Msa0042580:CDS 5.0%
!!! TATTTTATTTTATTGAATTA+AGG + chr1_1:73496434-73496453 None:intergenic 5.0%
GCCCAAAGTCTATGGCTACA+AGG - chr1_1:73492116-73492135 Msa0042580:three_prime_UTR 50.0%
TCCCCAACGACTCAATCATG+TGG - chr1_1:73493002-73493021 Msa0042580:CDS 50.0%
CCCCTATTGGAGATGCTCTA+AGG + chr1_1:73493032-73493051 None:intergenic 50.0%
TCCAATGGAGGGTCCTTAAC+GGG + chr1_1:73493079-73493098 None:intergenic 50.0%
CTCCAATGGAGGGTCCTTAA+CGG + chr1_1:73493080-73493099 None:intergenic 50.0%
ATGGGACCCGTTAGTTACTC+AGG + chr1_1:73493159-73493178 None:intergenic 50.0%
TGCCCAAACGCTTTAACCTC+TGG - chr1_1:73493906-73493925 Msa0042580:CDS 50.0%
GCCCAAACGCTTTAACCTCT+GGG - chr1_1:73493907-73493926 Msa0042580:CDS 50.0%
! GCCCAGAGGTTAAAGCGTTT+GGG + chr1_1:73493911-73493930 None:intergenic 50.0%
! AGCCCAGAGGTTAAAGCGTT+TGG + chr1_1:73493912-73493931 None:intergenic 50.0%
AGAGCTTGTGGTCCACTAGT+TGG + chr1_1:73494228-73494247 None:intergenic 50.0%
ATGCGTAAACGGTCGTTGGT+GGG + chr1_1:73494531-73494550 None:intergenic 50.0%
TATGCGTAAACGGTCGTTGG+TGG + chr1_1:73494532-73494551 None:intergenic 50.0%
CCAACGACCGTTTACGCATA+CGG - chr1_1:73494532-73494551 Msa0042580:intron 50.0%
CCATTGAGGGCTTCGATTGT+TGG + chr1_1:73494589-73494608 None:intergenic 50.0%
CCAACAATCGAAGCCCTCAA+TGG - chr1_1:73494586-73494605 Msa0042580:intron 50.0%
CGTGTGTGGAGATTCCATTG+AGG + chr1_1:73494603-73494622 None:intergenic 50.0%
! ATTTTGCCACGTCACGTGTG+TGG + chr1_1:73494617-73494636 None:intergenic 50.0%
CCGTGGAGATGAACTACAGT+GGG + chr1_1:73494715-73494734 None:intergenic 50.0%
CCCACTGTAGTTCATCTCCA+CGG - chr1_1:73494712-73494731 Msa0042580:intron 50.0%
ACCGTGGAGATGAACTACAG+TGG + chr1_1:73494716-73494735 None:intergenic 50.0%
ACTGTAGTTCATCTCCACGG+TGG - chr1_1:73494715-73494734 Msa0042580:intron 50.0%
ACCAGAGTCAACCTTCTAGC+TGG - chr1_1:73494889-73494908 Msa0042580:intron 50.0%
TGAAGGGTCGCGAATGATGT+AGG + chr1_1:73494926-73494945 None:intergenic 50.0%
ACCCTACGATTCATCCACAG+TGG - chr1_1:73495058-73495077 Msa0042580:intron 50.0%
GCCACTGTGGATGAATCGTA+GGG + chr1_1:73495062-73495081 None:intergenic 50.0%
TGCCACTGTGGATGAATCGT+AGG + chr1_1:73495063-73495082 None:intergenic 50.0%
GCAGCTTATCCTTACCCAAC+CGG - chr1_1:73495366-73495385 Msa0042580:intron 50.0%
! CATCAACTGGATCACCGGTT+GGG + chr1_1:73495383-73495402 None:intergenic 50.0%
TCATCAACTGGATCACCGGT+TGG + chr1_1:73495384-73495403 None:intergenic 50.0%
AGTTGACACGTCACGGATAC+CGG - chr1_1:73495449-73495468 Msa0042580:intron 50.0%
ACGGATACCGGAAAAGCTTG+TGG - chr1_1:73495461-73495480 Msa0042580:intron 50.0%
TATCAAGTGTGACGCGCACA+CGG - chr1_1:73495502-73495521 Msa0042580:intron 50.0%
CGCGAAACCTTATGAAGCAC+CGG - chr1_1:73495584-73495603 Msa0042580:intron 50.0%
GCGGAGATTCGCATGCAATG+AGG + chr1_1:73492232-73492251 None:intergenic 55.0%
ACAAGGACCACTCCCCGTTA+AGG - chr1_1:73493063-73493082 Msa0042580:CDS 55.0%
CCAATGGAGGGTCCTTAACG+GGG + chr1_1:73493078-73493097 None:intergenic 55.0%
CGTTAAGGACCCTCCATTGG+AGG - chr1_1:73493078-73493097 Msa0042580:CDS 55.0%
GGCGTGCACCCTTTACAAAC+TGG + chr1_1:73493756-73493775 None:intergenic 55.0%
! GGCATCCAAGTCATTGGCTG+TGG - chr1_1:73494091-73494110 Msa0042580:intron 55.0%
GGTAAGTGTCAAGGCCTGAG+TGG + chr1_1:73494303-73494322 None:intergenic 55.0%
! TCGTTGGTGGGAGATCTCTG+TGG + chr1_1:73494519-73494538 None:intergenic 55.0%
CCGTATGCGTAAACGGTCGT+TGG + chr1_1:73494535-73494554 None:intergenic 55.0%
AGGGCTTCGATTGTTGGACC+AGG + chr1_1:73494583-73494602 None:intergenic 55.0%
GAATCTCCACACACGTGACG+TGG - chr1_1:73494608-73494627 Msa0042580:intron 55.0%
TGGGGATAGTTGGGTCCCAT+GGG + chr1_1:73494663-73494682 None:intergenic 55.0%
CGGGTTCATGAATTCCACCG+TGG + chr1_1:73494732-73494751 None:intergenic 55.0%
! GCCAGCTAGAAGGTTGACTC+TGG + chr1_1:73494893-73494912 None:intergenic 55.0%
CGACGTCGTACCGTTAAACG+TGG + chr1_1:73495132-73495151 None:intergenic 55.0%
! ACTGGATCACCGGTTGGGTA+AGG + chr1_1:73495378-73495397 None:intergenic 55.0%
!!! GGTTTTGGATCAGACGGAGC+TGG - chr1_1:73495704-73495723 Msa0042580:intron 55.0%
! TGATGCTGTGAAGTGCCACG+TGG - chr1_1:73495767-73495786 Msa0042580:intron 55.0%
ACGTGGATGAGCATGCACGT+GGG - chr1_1:73495784-73495803 Msa0042580:intron 55.0%
CCCCGTTAAGGACCCTCCAT+TGG - chr1_1:73493075-73493094 Msa0042580:CDS 60.0%
GTGGGGATAGTTGGGTCCCA+TGG + chr1_1:73494664-73494683 None:intergenic 60.0%
TGCGAAAGTGGGGTCCAGTG+AGG - chr1_1:73495617-73495636 Msa0042580:intron 60.0%
AAGTGGGGTCCAGTGAGGTG+TGG - chr1_1:73495622-73495641 Msa0042580:intron 60.0%
CACGTGCATGCTCATCCACG+TGG + chr1_1:73495785-73495804 None:intergenic 60.0%
CACGTGGATGAGCATGCACG+TGG - chr1_1:73495783-73495802 Msa0042580:intron 60.0%
GGAGGGTCCTTAACGGGGAG+TGG + chr1_1:73493073-73493092 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 73491791 73496806 73491791 ID=Msa0042580;Name=Msa0042580
chr1_1 mRNA 73491791 73496806 73491791 ID=Msa0042580-mRNA-1;Parent=Msa0042580;Name=Msa0042580-mRNA-1;_AED=0.01;_eAED=0.01;_QI=176|1|1|1|0.66|0.5|4|567|580
chr1_1 exon 73491791 73492322 73491791 ID=Msa0042580-mRNA-1:exon:24665;Parent=Msa0042580-mRNA-1
chr1_1 exon 73492448 73492536 73492448 ID=Msa0042580-mRNA-1:exon:24664;Parent=Msa0042580-mRNA-1
chr1_1 exon 73492629 73494086 73492629 ID=Msa0042580-mRNA-1:exon:24663;Parent=Msa0042580-mRNA-1
chr1_1 exon 73496400 73496806 73496400 ID=Msa0042580-mRNA-1:exon:24662;Parent=Msa0042580-mRNA-1
chr1_1 five_prime_UTR 73496631 73496806 73496631 ID=Msa0042580-mRNA-1:five_prime_utr;Parent=Msa0042580-mRNA-1
chr1_1 CDS 73496400 73496630 73496400 ID=Msa0042580-mRNA-1:cds;Parent=Msa0042580-mRNA-1
chr1_1 CDS 73492629 73494086 73492629 ID=Msa0042580-mRNA-1:cds;Parent=Msa0042580-mRNA-1
chr1_1 CDS 73492483 73492536 73492483 ID=Msa0042580-mRNA-1:cds;Parent=Msa0042580-mRNA-1
chr1_1 three_prime_UTR 73492448 73492482 73492448 ID=Msa0042580-mRNA-1:three_prime_utr;Parent=Msa0042580-mRNA-1
chr1_1 three_prime_UTR 73491791 73492322 73491791 ID=Msa0042580-mRNA-1:three_prime_utr;Parent=Msa0042580-mRNA-1
Gene Sequence

>Msa0042580

ATGGAGAAAACAGTGCTCTTGAAGCTACTCACACTTTTAGCTCATTTACTATGTTTTGTTACCTTATCAACATCATCATCATCATCAGCTACAGTGAAACTCATAAATGCATCCAAGCTGAAGATGTTTGTTGATGACCTTCCTAATATGCCCAAAGTCTATGGCTACAAGGTTGTAGATGGCGTTCCCAAATCAAAGTCTCTCAAGATTGGCATGTTCAAGAAGAAATGGAAATTCCACAGAGATCTCCCACCAACGACCGTTTACGCATACGGATTAAACAAACACAAAGCAACAATTCCTGGTCCAACAATCGAAGCCCTCAATGGAATCTCCACACACGTGACGTGGCAAAATCATCTCCCTCCAAATCACATACTCCCATGGGACCCAACTATCCCCACTTCATTGACCAAAACAACCAATGGTATTCCCACTGTAGTTCATCTCCACGGTGGAATTCATGAACCCGAAAGCGATGGAAATCCAAACTCATTTTTCACCGCTGGATTCAAAATCAAGGGACCCACTTGGACAAAAAAGTCATATCACTATCCAAATAATCAACACCCTGGAAATTTATGGTATCATGATCATGCTATGGGTTTGACCAGAGTCAACCTTCTAGCTGGCTTAATTGGGACCTACATCATTCGCGACCCTTCAATCGAATCACCACTAAAATTACCACACGGTAACGAATTCGATTTACCGTTGATGTTATTCGATCGTAGCTTTAAAACGGACGGTTCGATTTTCATGAATTCAACTGGGAACAACCCTACGATTCATCCACAGTGGCAACCAGAATATTTTGGTGACGCAATCATTGTAAACGGTAAAGCTTGGCCACGTTTAACGGTACGACGTCGTAAGTATAGATTTCGTATCATCAATGCAAGTAACGCTAGGTTTTTTAGACTCTTTTTCAGCAATGGTTTAAGATTTGTACACGTGGCATCTGATTCTGCTTATATTGGGAAGCCAGTTGTGAGTAATGAAACTCTTGTGGGGCCATCTGAGATCACAGACGTTATTGTTGATTTTTCTGAATCAAAGAGTAATGCAGCTATTCTACGTAATGATGCAGCTTATCCTTACCCAACCGGTGATCCAGTTGATGAAACTAGTGGTAAGGTTATGAAATTTGTAATTTTACCGGATAAAGAAGTTGACACGTCACGGATACCGGAAAAGCTTGTGGAATATCCGATTGTTGATTTATCAAGTGTGACGCGCACACGGTATATTGCTATGTATGAGTACACGAGTGATATTGATGAACCGATTCATTTGTATTTGAACGCGAAACCTTATGAAGCACCGGTTACAGAAATTGCGAAAGTGGGGTCCAGTGAGGTGTGGTATGTGATTAATTTGACTGATGATAATCACCCACTTCATATTCATTTGGGTTTGTTTAAGGTTTTGGATCAGACGGAGCTGGTGAAATCTGATGAATTTAAGGATTGTATGACGAAAAATAATGATGCTGTGAAGTGCCACGTGGATGAGCATGCACGTGGGAAGAAAGTTAAGGTTCCTGATTATGAGAAAGGGTGGAAGAATGTGTTTAAGATGAGACCTGGGTTTGTTACAAAGATTGTTGTTAGGTTTGCTTACATACATACCAATGCAACGTATGGGTTTGATGCAACTAAGGAGTCTGGTTACGTGTATCATTGTCATATATTGGACCATGAAGATAATGCTATGATGAGACCCTTGAAGATGATCAAGTGA
Protein sequence

>Msa0042580

MEKTVLLKLLTLLAHLLCFVTLSTSSSSSATVKLINASKLKMFVDDLPNMPKVYGYKVVDGVPKSKSLKIGMFKKKWKFHRDLPPTTVYAYGLNKHKATIPGPTIEALNGISTHVTWQNHLPPNHILPWDPTIPTSLTKTTNGIPTVVHLHGGIHEPESDGNPNSFFTAGFKIKGPTWTKKSYHYPNNQHPGNLWYHDHAMGLTRVNLLAGLIGTYIIRDPSIESPLKLPHGNEFDLPLMLFDRSFKTDGSIFMNSTGNNPTIHPQWQPEYFGDAIIVNGKAWPRLTVRRRKYRFRIINASNARFFRLFFSNGLRFVHVASDSAYIGKPVVSNETLVGPSEITDVIVDFSESKSNAAILRNDAAYPYPTGDPVDETSGKVMKFVILPDKEVDTSRIPEKLVEYPIVDLSSVTRTRYIAMYEYTSDIDEPIHLYLNAKPYEAPVTEIAKVGSSEVWYVINLTDDNHPLHIHLGLFKVLDQTELVKSDEFKDCMTKNNDAVKCHVDEHARGKKVKVPDYEKGWKNVFKMRPGFVTKIVVRFAYIHTNATYGFDATKESGYVYHCHILDHEDNAMMRPLKMIK*