AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0419420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419420 MtrunA17_Chr3g0117991 93.333 225 14 1 1 225 1 224 4.13e-157 434
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419420 AT5G50100.1 59.406 202 74 2 25 225 20 214 6.48e-84 249

Find 63 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACACATTGCAGCAAAATT+TGG 0.186588 3_2:+67511807 None:intergenic
TTACAAAATGCATTCGGTAT+AGG 0.335148 3_2:-67511860 Msa0419420:three_prime_UTR
AAATACCGTCTTCAAGTTAC+AGG 0.354145 3_2:-67513005 Msa0419420:intron
TTACTCTCCCGACGAGAATC+AGG 0.359294 3_2:-67514037 Msa0419420:CDS
CGCCATTACAAAATATGAAC+CGG 0.360782 3_2:-67513181 Msa0419420:intron
TAGTGATAAGTGCTGATCTA+TGG 0.374338 3_2:+67510050 None:intergenic
GAGTGGTGATGATGGGTTAT+GGG 0.375099 3_2:+67514851 None:intergenic
GCCTATATCAACAAACTTGA+TGG 0.376854 3_2:+67514068 None:intergenic
AAACAGACCCTTAGTCTCTT+AGG 0.398827 3_2:-67510117 Msa0419420:intron
ACCATCAAGTTTGTTGATAT+AGG 0.406883 3_2:-67514069 Msa0419420:CDS
TGTACCTCTCGCATGCATAA+TGG 0.408229 3_2:+67514274 None:intergenic
GGGATACCGGGTTTGAGAAT+AGG 0.422503 3_2:+67514753 None:intergenic
AGAGTGGTGATGATGGGTTA+TGG 0.434759 3_2:+67514850 None:intergenic
TGAACAAGTTGGTCTTGGTT+GGG 0.442711 3_2:-67513208 Msa0419420:CDS
GAGAACAGTCTCCTAAAGAT+TGG 0.446474 3_2:-67514327 Msa0419420:CDS
TGGAATTTAAGATTGTGAAA+TGG 0.448918 3_2:+67514819 None:intergenic
AGAATCTGCCTAAGAGACTA+AGG 0.449400 3_2:+67510109 None:intergenic
ATGAACAAGTTGGTCTTGGT+TGG 0.452022 3_2:-67513209 Msa0419420:CDS
TCCCTGGTTTGGTTGTGGAT+TGG 0.452797 3_2:+67514926 None:intergenic
TTATATGAACAAGTTGGTCT+TGG 0.455211 3_2:-67513213 Msa0419420:CDS
TCTTATTTACAAAATGCATT+CGG 0.460783 3_2:-67511866 Msa0419420:three_prime_UTR
CTCCAATCCACAACCAAACC+AGG 0.471077 3_2:-67514928 Msa0419420:five_prime_UTR
CGAGAGAAGAATAAGAGTTA+TGG 0.482537 3_2:-67514093 Msa0419420:CDS
AAGTGCTGATCTATGGATAT+TGG 0.483344 3_2:+67510057 None:intergenic
TCTAATATTTCTTCGATAGG+TGG 0.501456 3_2:+67512560 None:intergenic
AAGATTAAAATGCTATATGA+TGG 0.504605 3_2:-67514304 Msa0419420:CDS
GGTTGTGGATTGGAGATGGA+AGG 0.508644 3_2:+67514936 None:intergenic
ATTCATGCTATTCTATCAGA+TGG 0.517070 3_2:-67513712 Msa0419420:CDS
GTTTGGTTGTGGATTGGAGA+TGG 0.522053 3_2:+67514932 None:intergenic
ATTAGAAGCTCGAAGAAAGA+AGG 0.528275 3_2:-67512543 Msa0419420:intron
GCTTCTAATATTTCTTCGAT+AGG 0.530257 3_2:+67512557 None:intergenic
GTGAAAGATGAGGACGGAGA+TGG 0.540320 3_2:+67514799 None:intergenic
AAGAAATGACTTAAAATACC+AGG 0.544386 3_2:+67511581 None:intergenic
TTCTTCAGATTGTATTACAC+AGG 0.545236 3_2:-67510090 Msa0419420:three_prime_UTR
AGGAGATTATATGAACAAGT+TGG 0.546603 3_2:-67513219 Msa0419420:CDS
GGTGAAAAGAGTGGTGATGA+TGG 0.546710 3_2:+67514843 None:intergenic
TCGAGGCCCTGATTCTCGTC+GGG 0.546724 3_2:+67514030 None:intergenic
GGTTTGAGAATAGGAAGTGT+TGG 0.554588 3_2:+67514762 None:intergenic
CAAAATGCATTCGGTATAGG+TGG 0.560799 3_2:-67511857 Msa0419420:three_prime_UTR
GACCGGTGAAAACTTTCAGA+AGG 0.563480 3_2:-67511917 Msa0419420:three_prime_UTR
TACAATTTCTAAGAAAGAAG+AGG 0.573127 3_2:-67514353 Msa0419420:CDS
GTCGAGGCCCTGATTCTCGT+CGG 0.574141 3_2:+67514029 None:intergenic
AGTGGTGATGATGGGTTATG+GGG 0.578389 3_2:+67514852 None:intergenic
GATGTAAATTTCCATCTGAC+CGG 0.580067 3_2:-67511934 Msa0419420:exon
TACTCTCCCGACGAGAATCA+GGG 0.588982 3_2:-67514036 Msa0419420:CDS
TTTCTCATAATAAAATGCCC+TGG 0.595028 3_2:-67511599 Msa0419420:three_prime_UTR
AATTTCTAAGAAAGAAGAGG+AGG 0.606166 3_2:-67514350 Msa0419420:CDS
ATTTCTAAGAAAGAAGAGGA+GGG 0.607445 3_2:-67514349 Msa0419420:CDS
GAATCTGCCTAAGAGACTAA+GGG 0.608687 3_2:+67510110 None:intergenic
AAGAAGCCATACTTCGACAT+CGG 0.610113 3_2:+67513678 None:intergenic
ATTTACCTGTAACTTGAAGA+CGG 0.611328 3_2:+67513000 None:intergenic
GTGAAAAGAGTGGTGATGAT+GGG 0.613615 3_2:+67514844 None:intergenic
AGGAAGTGTTGGAAAAGCAT+CGG 0.623406 3_2:+67514773 None:intergenic
AGAAATGACTTAAAATACCA+GGG 0.633946 3_2:+67511582 None:intergenic
TAAGACTTAAGGGAGACTAC+AGG 0.637394 3_2:+67511548 None:intergenic
GACTAACAGTTTGATAGTCG+AGG 0.648679 3_2:+67514013 None:intergenic
AATTTAAGATTGTGAAATGG+AGG 0.655857 3_2:+67514822 None:intergenic
GCATCGGCGTGTGAAAGATG+AGG 0.663047 3_2:+67514789 None:intergenic
CGGCGTGTGAAAGATGAGGA+CGG 0.668499 3_2:+67514793 None:intergenic
TCCAATCCACAACCAAACCA+GGG 0.670806 3_2:-67514927 Msa0419420:five_prime_UTR
TTGTCCATTATGCATGCGAG+AGG 0.675961 3_2:-67514278 Msa0419420:intron
ACACTTCCTATTCTCAAACC+CGG 0.690891 3_2:-67514759 Msa0419420:intron
TGAAATGGAGGTGAAAAGAG+TGG 0.691751 3_2:+67514834 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAATAAGAAATAAAAAT+TGG - chr3_2:67514075-67514094 Msa0419420:CDS 10.0%
!!! AAAGCTGATTTATTTATTTT+TGG - chr3_2:67510993-67511012 Msa0419420:intron 15.0%
!! ATTCTATAAAAATTTGAACA+TGG + chr3_2:67511396-67511415 None:intergenic 15.0%
!! AGTATAATTAATTATTAACG+TGG - chr3_2:67512262-67512281 Msa0419420:intron 15.0%
!! CAATTAAAGCATAAATTAAA+AGG + chr3_2:67512365-67512384 None:intergenic 15.0%
!!! TGTTTTTGTTTATTATAGAT+GGG + chr3_2:67512731-67512750 None:intergenic 15.0%
!! AAAATATGGTATACATTATT+AGG - chr3_2:67512816-67512835 Msa0419420:intron 15.0%
!! AATAAGAAATAAAAATTGGT+GGG - chr3_2:67514079-67514098 Msa0419420:CDS 15.0%
!!! AAAGATTATATTTTGACATT+AGG - chr3_2:67514632-67514651 Msa0419420:intron 15.0%
!!! TTCTTTGTTTTTTGTTTTGT+AGG - chr3_2:67510547-67510566 Msa0419420:intron 20.0%
!!! TCTTTGTTTTTTGTTTTGTA+GGG - chr3_2:67510548-67510567 Msa0419420:intron 20.0%
!!! ATTTTAATCTTCCAATCTTT+AGG + chr3_2:67510655-67510674 None:intergenic 20.0%
!! AAGATTAAAATGCTATATGA+TGG - chr3_2:67510664-67510683 Msa0419420:intron 20.0%
!!! GTTTTGTTCATTAATTTGTT+TGG - chr3_2:67511046-67511065 Msa0419420:intron 20.0%
!!! TGATTTTTGTTTTTCCTTTT+AGG - chr3_2:67511222-67511241 Msa0419420:intron 20.0%
!! TATCCAGATAATGATATTAA+GGG + chr3_2:67511349-67511368 None:intergenic 20.0%
!! ATATCCAGATAATGATATTA+AGG + chr3_2:67511350-67511369 None:intergenic 20.0%
!! TATTTATATCTAACTCTTAC+TGG + chr3_2:67511512-67511531 None:intergenic 20.0%
!! GTAAAAATAGAATTTCATAC+TGG + chr3_2:67511718-67511737 None:intergenic 20.0%
!! TTGGTTCATTATGTTATTAA+TGG - chr3_2:67511882-67511901 Msa0419420:three_prime_UTR 20.0%
!! TTAAACAATATTCACAGATT+GGG - chr3_2:67511907-67511926 Msa0419420:three_prime_UTR 20.0%
!!! TGATTCTGTATATAGTTTTT+GGG - chr3_2:67511938-67511957 Msa0419420:exon 20.0%
!! TTACAATATTACTTACTACA+TGG + chr3_2:67512027-67512046 None:intergenic 20.0%
!! TATTGTAATTGTTCTTTCTA+TGG - chr3_2:67512039-67512058 Msa0419420:intron 20.0%
!! ATAATTAATTATTAACGTGG+CGG - chr3_2:67512265-67512284 Msa0419420:intron 20.0%
!! CAATGAAAATTTAACACAAA+AGG - chr3_2:67512525-67512544 Msa0419420:intron 20.0%
!!! ATTCTCTTTAAAAATTCAGA+TGG + chr3_2:67512567-67512586 None:intergenic 20.0%
!!! CTGTTTTTGTTTATTATAGA+TGG + chr3_2:67512732-67512751 None:intergenic 20.0%
!!! AATTGACTCTATTCAAATAT+TGG - chr3_2:67512863-67512882 Msa0419420:intron 20.0%
!!! TTATTTTCAATCCTTTTTAC+AGG - chr3_2:67512980-67512999 Msa0419420:intron 20.0%
!!! TATTTTCAATCCTTTTTACA+GGG - chr3_2:67512981-67513000 Msa0419420:intron 20.0%
!!! TCTTATTTACAAAATGCATT+CGG - chr3_2:67513102-67513121 Msa0419420:intron 20.0%
!! AATAAAAAGTGACAAAAACA+AGG + chr3_2:67513240-67513259 None:intergenic 20.0%
!!! TTGTTTTTGTCACTTTTTAT+TGG - chr3_2:67513239-67513258 Msa0419420:intron 20.0%
!!! TTTTTATTGGTCAAAAACAA+TGG - chr3_2:67513252-67513271 Msa0419420:intron 20.0%
!!! TTTTAATCTTCTTAATGCTT+TGG - chr3_2:67513724-67513743 Msa0419420:CDS 20.0%
!! GAATAAGAAATAAAAATTGG+TGG - chr3_2:67514078-67514097 Msa0419420:CDS 20.0%
!! ATAAGAAATAAAAATTGGTG+GGG - chr3_2:67514080-67514099 Msa0419420:CDS 20.0%
!! AATTTAAGATTGTGAAATGG+AGG + chr3_2:67510149-67510168 None:intergenic 25.0%
!! TGGAATTTAAGATTGTGAAA+TGG + chr3_2:67510152-67510171 None:intergenic 25.0%
! AAACCATTGATATTCGATTA+GGG + chr3_2:67510239-67510258 None:intergenic 25.0%
! AAAACCATTGATATTCGATT+AGG + chr3_2:67510240-67510259 None:intergenic 25.0%
!! TCATCAGATTTTAAATTAGC+AGG + chr3_2:67510355-67510374 None:intergenic 25.0%
! CCAATGATAATAATAAGGTT+TGG + chr3_2:67510494-67510513 None:intergenic 25.0%
! CCAAACCTTATTATTATCAT+TGG - chr3_2:67510491-67510510 Msa0419420:intron 25.0%
! AACCTTATTATTATCATTGG+TGG - chr3_2:67510494-67510513 Msa0419420:intron 25.0%
! AACCACCAATGATAATAATA+AGG + chr3_2:67510499-67510518 None:intergenic 25.0%
!! TACAATTTCTAAGAAAGAAG+AGG - chr3_2:67510615-67510634 Msa0419420:intron 25.0%
! TTTACAAGCAATGAATTGAT+TGG - chr3_2:67511141-67511160 Msa0419420:intron 25.0%
! TATTAAGGGTCTACAATTAT+AGG + chr3_2:67511335-67511354 None:intergenic 25.0%
!!! TGAAATTCTATTTTTACTGC+AGG - chr3_2:67511721-67511740 Msa0419420:intron 25.0%
! GTTAAACAATATTCACAGAT+TGG - chr3_2:67511906-67511925 Msa0419420:three_prime_UTR 25.0%
!! CTGATTCTGTATATAGTTTT+TGG - chr3_2:67511937-67511956 Msa0419420:exon 25.0%
!! TACTTACTACATGGAAATTT+TGG + chr3_2:67512018-67512037 None:intergenic 25.0%
! CTAAAAGTAATACCTTAGAT+GGG - chr3_2:67512062-67512081 Msa0419420:intron 25.0%
!! ATGCTTTAATTGTTCGTTTT+TGG - chr3_2:67512373-67512392 Msa0419420:intron 25.0%
! TGTTTCTTCAGAATAAAATC+AGG - chr3_2:67512489-67512508 Msa0419420:intron 25.0%
! TAAAATCAGGAAAATGAAGA+TGG - chr3_2:67512502-67512521 Msa0419420:intron 25.0%
! TTAGTCTATCCCTATTAATT+TGG - chr3_2:67512654-67512673 Msa0419420:intron 25.0%
! TAGTCTATCCCTATTAATTT+GGG - chr3_2:67512655-67512674 Msa0419420:intron 25.0%
! CAACTATACCCAAATTAATA+GGG + chr3_2:67512666-67512685 None:intergenic 25.0%
! TCAACTATACCCAAATTAAT+AGG + chr3_2:67512667-67512686 None:intergenic 25.0%
! GAAAAATATGTTACCAACAT+TGG + chr3_2:67512895-67512914 None:intergenic 25.0%
! TGTAATATGCATAACAATAC+AGG - chr3_2:67512917-67512936 Msa0419420:intron 25.0%
!!! GTGCTGATTTTTGTTTTTAT+GGG - chr3_2:67512955-67512974 Msa0419420:intron 25.0%
! AGAAATGACTTAAAATACCA+GGG + chr3_2:67513389-67513408 None:intergenic 25.0%
! AAGAAATGACTTAAAATACC+AGG + chr3_2:67513390-67513409 None:intergenic 25.0%
!! ATTCAATTTTTACTCTCCAA+TGG + chr3_2:67514124-67514143 None:intergenic 25.0%
! GAAAACTTTCTTCTCAAATT+AGG - chr3_2:67514690-67514709 Msa0419420:intron 25.0%
! AGATTTCAAGAAACTTTCTA+TGG + chr3_2:67514784-67514803 None:intergenic 25.0%
!!! TGAAAGACATTTTTTTTCCC+TGG + chr3_2:67510061-67510080 None:intergenic 30.0%
AACCATTGATATTCGATTAG+GGG + chr3_2:67510238-67510257 None:intergenic 30.0%
TGAACTAAAACAAAACTTGC+AGG + chr3_2:67510330-67510349 None:intergenic 30.0%
! AATTTCTAAGAAAGAAGAGG+AGG - chr3_2:67510618-67510637 Msa0419420:intron 30.0%
! ATTTCTAAGAAAGAAGAGGA+GGG - chr3_2:67510619-67510638 Msa0419420:intron 30.0%
TCAATGAATGACATGAAACA+AGG + chr3_2:67510805-67510824 None:intergenic 30.0%
!!! TTGTTGCTATTTGTCGTTTT+AGG - chr3_2:67510841-67510860 Msa0419420:intron 30.0%
!! ACCATCAAGTTTGTTGATAT+AGG - chr3_2:67510899-67510918 Msa0419420:intron 30.0%
GGTTTCATATCTCAATTACT+AGG - chr3_2:67511014-67511033 Msa0419420:intron 30.0%
TTCATGAACATCAACAAATG+TGG - chr3_2:67511080-67511099 Msa0419420:intron 30.0%
!! TTGTTTTTCCTTTTAGGCTA+TGG - chr3_2:67511228-67511247 Msa0419420:intron 30.0%
! TGTTTTTCCTTTTAGGCTAT+GGG - chr3_2:67511229-67511248 Msa0419420:intron 30.0%
ATTCATGCTATTCTATCAGA+TGG - chr3_2:67511256-67511275 Msa0419420:intron 30.0%
AGACCCTTAATATCATTATC+TGG - chr3_2:67511343-67511362 Msa0419420:intron 30.0%
! TAGTATACATGCTCATCTTT+TGG + chr3_2:67511481-67511500 None:intergenic 30.0%
AGGAGATTATATGAACAAGT+TGG - chr3_2:67511749-67511768 Msa0419420:intron 30.0%
!! TTATATGAACAAGTTGGTCT+TGG - chr3_2:67511755-67511774 Msa0419420:intron 30.0%
!! AACCGGTTCATATTTTGTAA+TGG + chr3_2:67511792-67511811 None:intergenic 30.0%
! TCTTCCTACCATACTTTTAA+AGG - chr3_2:67511814-67511833 Msa0419420:three_prime_UTR 30.0%
! TTTTCTGCAGTAAAGCTAAA+GGG + chr3_2:67511857-67511876 None:intergenic 30.0%
! TTTTTCTGCAGTAAAGCTAA+AGG + chr3_2:67511858-67511877 None:intergenic 30.0%
!! TTAGCTTTACTGCAGAAAAA+TGG - chr3_2:67511858-67511877 Msa0419420:three_prime_UTR 30.0%
ATTTACCTGTAACTTGAAGA+CGG + chr3_2:67511971-67511990 None:intergenic 30.0%
GCTAAAAGTAATACCTTAGA+TGG - chr3_2:67512061-67512080 Msa0419420:intron 30.0%
AAAGTGAAAAAACCCATCTA+AGG + chr3_2:67512077-67512096 None:intergenic 30.0%
!!! ATGGGTTTTTTCACTTTAGT+TGG - chr3_2:67512080-67512099 Msa0419420:intron 30.0%
! TTTTTCACTTTAGTTGGACT+TGG - chr3_2:67512086-67512105 Msa0419420:intron 30.0%
! TTTTCACTTTAGTTGGACTT+GGG - chr3_2:67512087-67512106 Msa0419420:intron 30.0%
CATGCTTAGTAGAAATGATA+TGG - chr3_2:67512120-67512139 Msa0419420:intron 30.0%
AGTGATGATCTTATTGATGA+TGG + chr3_2:67512220-67512239 None:intergenic 30.0%
TATAGTTAGCATAACCATAG+AGG + chr3_2:67512326-67512345 None:intergenic 30.0%
TCTAATATTTCTTCGATAGG+TGG + chr3_2:67512411-67512430 None:intergenic 30.0%
GCTTCTAATATTTCTTCGAT+AGG + chr3_2:67512414-67512433 None:intergenic 30.0%
AACACAAAAGGAATTTCAGT+CGG - chr3_2:67512537-67512556 Msa0419420:intron 30.0%
TAATAGGGATAGACTAATCA+AGG + chr3_2:67512651-67512670 None:intergenic 30.0%
!! TCTTTGATTTTTGCAACATG+AGG + chr3_2:67512690-67512709 None:intergenic 30.0%
TTGTTTATTATAGATGGGCA+TGG + chr3_2:67512726-67512745 None:intergenic 30.0%
CACAGCAAAATGCTAAAATA+TGG - chr3_2:67512802-67512821 Msa0419420:intron 30.0%
!! CTCTATTCAAATATTGGTTC+AGG - chr3_2:67512869-67512888 Msa0419420:intron 30.0%
!!! GGTGCTGATTTTTGTTTTTA+TGG - chr3_2:67512954-67512973 Msa0419420:intron 30.0%
TTACAAAATGCATTCGGTAT+AGG - chr3_2:67513108-67513127 Msa0419420:intron 30.0%
TGCAGCAAAATTTGGAAAAA+AGG + chr3_2:67513156-67513175 None:intergenic 30.0%
ATACACATTGCAGCAAAATT+TGG + chr3_2:67513164-67513183 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr3_2:67513265-67513284 Msa0419420:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr3_2:67513337-67513356 None:intergenic 30.0%
TTTCTCATAATAAAATGCCC+TGG - chr3_2:67513369-67513388 Msa0419420:intron 30.0%
TTGCAAATGGTAAGACTTAA+GGG + chr3_2:67513433-67513452 None:intergenic 30.0%
ATTGCAAATGGTAAGACTTA+AGG + chr3_2:67513434-67513453 None:intergenic 30.0%
TTAAGTCTTACCATTTGCAA+TGG - chr3_2:67513433-67513452 Msa0419420:intron 30.0%
AGGTTTCAATTGTGTTGAAT+GGG + chr3_2:67513550-67513569 None:intergenic 30.0%
TTTCTCTACAAATAGAGACT+TGG - chr3_2:67513814-67513833 Msa0419420:intron 30.0%
GATTAAGAGAGTGAAAAACT+TGG + chr3_2:67513869-67513888 None:intergenic 30.0%
AAATAAAAATTGGTGGGGTA+GGG - chr3_2:67514085-67514104 Msa0419420:CDS 30.0%
GTGTTGGAAATTGAAAAAGT+TGG - chr3_2:67514178-67514197 Msa0419420:intron 30.0%
!! TTGAAAAAGTTGGTGTTGAA+TGG - chr3_2:67514188-67514207 Msa0419420:intron 30.0%
AGAGTAACCATTGTACATTT+AGG - chr3_2:67514220-67514239 Msa0419420:intron 30.0%
GAGTAACCATTGTACATTTA+GGG - chr3_2:67514221-67514240 Msa0419420:intron 30.0%
!! GGAAAGTGAAATGATTTGTT+AGG - chr3_2:67514328-67514347 Msa0419420:CDS 30.0%
GAAAGTGAATAGAAAATGAG+AGG - chr3_2:67514366-67514385 Msa0419420:CDS 30.0%
! TTTGAGAAGAAAGTTTTCGA+TGG + chr3_2:67514688-67514707 None:intergenic 30.0%
AACTTTCTTCTCAAATTAGG+AGG - chr3_2:67514693-67514712 Msa0419420:intron 30.0%
ACTTTCTTCTCAAATTAGGA+GGG - chr3_2:67514694-67514713 Msa0419420:intron 30.0%
TCAAGAAACTTTCTATGGTT+TGG + chr3_2:67514779-67514798 None:intergenic 30.0%
TTCTTCAGATTGTATTACAC+AGG - chr3_2:67514878-67514897 Msa0419420:CDS 30.0%
!!! GACATTTTTTTTCCCTGGTT+TGG + chr3_2:67510056-67510075 None:intergenic 35.0%
ATCCCCTAATCGAATATCAA+TGG - chr3_2:67510233-67510252 Msa0419420:intron 35.0%
AGTCCTTAACGTAAGCTTAT+TGG - chr3_2:67510379-67510398 Msa0419420:intron 35.0%
AGTCCAATAAGCTTACGTTA+AGG + chr3_2:67510385-67510404 None:intergenic 35.0%
!!! CCACACTTGTTCATTGATTT+TGG + chr3_2:67510728-67510747 None:intergenic 35.0%
CCAAAATCAATGAACAAGTG+TGG - chr3_2:67510725-67510744 Msa0419420:intron 35.0%
CGAGAGAAGAATAAGAGTTA+TGG - chr3_2:67510875-67510894 Msa0419420:intron 35.0%
GCCTATATCAACAAACTTGA+TGG + chr3_2:67510903-67510922 None:intergenic 35.0%
AATTCTTCCCATAGCCTAAA+AGG + chr3_2:67511239-67511258 None:intergenic 35.0%
TTTCAACTTCTATGTAACCC+CGG - chr3_2:67511537-67511556 Msa0419420:intron 35.0%
AATGACATCCATTAATGCAG+AGG - chr3_2:67511625-67511644 Msa0419420:intron 35.0%
ACTTAAGTCCTCTGCATTAA+TGG + chr3_2:67511636-67511655 None:intergenic 35.0%
! AGTGAGAGTACAAATACTGA+GGG + chr3_2:67511659-67511678 None:intergenic 35.0%
!! TATTTTTACTGCAGGCGTTT+AGG - chr3_2:67511729-67511748 Msa0419420:intron 35.0%
CGCCATTACAAAATATGAAC+CGG - chr3_2:67511787-67511806 Msa0419420:intron 35.0%
! TTCTGCGTCCTTTAAAAGTA+TGG + chr3_2:67511825-67511844 None:intergenic 35.0%
TTTACTGCAGAAAAATGGCT+TGG - chr3_2:67511863-67511882 Msa0419420:three_prime_UTR 35.0%
! AAATACCGTCTTCAAGTTAC+AGG - chr3_2:67511963-67511982 Msa0419420:CDS 35.0%
! TCAATAGTTCTATGCTTCTC+GGG + chr3_2:67512158-67512177 None:intergenic 35.0%
! CTCAATAGTTCTATGCTTCT+CGG + chr3_2:67512159-67512178 None:intergenic 35.0%
!!! ATTGTTCGTTTTTGGTTTCC+AGG - chr3_2:67512381-67512400 Msa0419420:intron 35.0%
ATTAGAAGCTCGAAGAAAGA+AGG - chr3_2:67512425-67512444 Msa0419420:intron 35.0%
ATAGACTAATCAAGGCAATG+GGG + chr3_2:67512643-67512662 None:intergenic 35.0%
GATAGACTAATCAAGGCAAT+GGG + chr3_2:67512644-67512663 None:intergenic 35.0%
! ATACAGGTTTGAGTACTGTT+TGG - chr3_2:67512933-67512952 Msa0419420:intron 35.0%
GATGTAAATTTCCATCTGAC+CGG - chr3_2:67513034-67513053 Msa0419420:CDS 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr3_2:67513332-67513351 Msa0419420:intron 35.0%
TTCAACACAACCATTGCAAA+TGG + chr3_2:67513446-67513465 None:intergenic 35.0%
TGTTGAATCTGACATTCAAC+AGG - chr3_2:67513459-67513478 Msa0419420:intron 35.0%
ATGTGTGTTGAATGAAGACA+TGG - chr3_2:67513507-67513526 Msa0419420:intron 35.0%
CAGGTTTCAATTGTGTTGAA+TGG + chr3_2:67513551-67513570 None:intergenic 35.0%
AGAGAGAAAACGAATTCTGT+GGG - chr3_2:67513661-67513680 Msa0419420:intron 35.0%
GAGACTTGGATCATTTCATT+TGG - chr3_2:67513828-67513847 Msa0419420:intron 35.0%
GAAATAAAAATTGGTGGGGT+AGG - chr3_2:67514084-67514103 Msa0419420:CDS 35.0%
TTAAGAGAGAGAAGATGATG+TGG - chr3_2:67514154-67514173 Msa0419420:intron 35.0%
AACACACCCTAAATGTACAA+TGG + chr3_2:67514230-67514249 None:intergenic 35.0%
! TTGTACATTTAGGGTGTGTT+TGG - chr3_2:67514230-67514249 Msa0419420:intron 35.0%
ATCTTTCCTCTCACTTTCTT+TGG + chr3_2:67514260-67514279 None:intergenic 35.0%
GTAAGAGGAAAGATTGTAAG+AGG - chr3_2:67514281-67514300 Msa0419420:CDS 35.0%
! GTAAGAGGAAAGAAAGTATG+AGG - chr3_2:67514296-67514315 Msa0419420:CDS 35.0%
! GAAAGTATGAGGAAAGTGAA+TGG - chr3_2:67514307-67514326 Msa0419420:CDS 35.0%
! AAGAAAGTTTTCGATGGTAG+GGG + chr3_2:67514682-67514701 None:intergenic 35.0%
! GAAGAAAGTTTTCGATGGTA+GGG + chr3_2:67514683-67514702 None:intergenic 35.0%
! AGAAGAAAGTTTTCGATGGT+AGG + chr3_2:67514684-67514703 None:intergenic 35.0%
!!! AGGAAAGACCACTTTTTTCT+GGG + chr3_2:67514739-67514758 None:intergenic 35.0%
!!! AAGGAAAGACCACTTTTTTC+TGG + chr3_2:67514740-67514759 None:intergenic 35.0%
!! TCTAAGGAAAGAAAGCATCA+AGG + chr3_2:67514817-67514836 None:intergenic 35.0%
!! AAGTGCTGATCTATGGATAT+TGG + chr3_2:67514914-67514933 None:intergenic 35.0%
!! TAGTGATAAGTGCTGATCTA+TGG + chr3_2:67514921-67514940 None:intergenic 35.0%
!!! TTTTTTCCCTGGTTTGGTTG+TGG + chr3_2:67510050-67510069 None:intergenic 40.0%
! GTGAAAAGAGTGGTGATGAT+GGG + chr3_2:67510127-67510146 None:intergenic 40.0%
TGAAATGGAGGTGAAAAGAG+TGG + chr3_2:67510137-67510156 None:intergenic 40.0%
!! AGGAAGTGTTGGAAAAGCAT+CGG + chr3_2:67510198-67510217 None:intergenic 40.0%
! GGTTTGAGAATAGGAAGTGT+TGG + chr3_2:67510209-67510228 None:intergenic 40.0%
ACACTTCCTATTCTCAAACC+CGG - chr3_2:67510209-67510228 Msa0419420:intron 40.0%
ATATTCGATTAGGGGATACC+GGG + chr3_2:67510230-67510249 None:intergenic 40.0%
GATATTCGATTAGGGGATAC+CGG + chr3_2:67510231-67510250 None:intergenic 40.0%
GAGAACAGTCTCCTAAAGAT+TGG - chr3_2:67510641-67510660 Msa0419420:intron 40.0%
! GACTAACAGTTTGATAGTCG+AGG + chr3_2:67510958-67510977 None:intergenic 40.0%
AACTGTTAGTCCCTTCTCTA+TGG - chr3_2:67510967-67510986 Msa0419420:intron 40.0%
!! CAGCTTTAGACCATAGAGAA+GGG + chr3_2:67510980-67510999 None:intergenic 40.0%
!! TCAGCTTTAGACCATAGAGA+AGG + chr3_2:67510981-67511000 None:intergenic 40.0%
AAGAAGCCATACTTCGACAT+CGG + chr3_2:67511293-67511312 None:intergenic 40.0%
! CAGTGAGAGTACAAATACTG+AGG + chr3_2:67511660-67511679 None:intergenic 40.0%
TGTCATACGAATCTGTTCAG+TGG - chr3_2:67511678-67511697 Msa0419420:intron 40.0%
!! ATGAACAAGTTGGTCTTGGT+TGG - chr3_2:67511759-67511778 Msa0419420:intron 40.0%
!! TGAACAAGTTGGTCTTGGTT+GGG - chr3_2:67511760-67511779 Msa0419420:intron 40.0%
AGTATGGTAGGAAGACTAAC+CGG + chr3_2:67511809-67511828 None:intergenic 40.0%
! GCGTCCTTTAAAAGTATGGT+AGG + chr3_2:67511821-67511840 None:intergenic 40.0%
GGATAGACTAATCAAGGCAA+TGG + chr3_2:67512645-67512664 None:intergenic 40.0%
! AGGCATAGTGTTTAGAGTTC+TGG - chr3_2:67512836-67512855 Msa0419420:intron 40.0%
!! ATATTGGTTCAGGCCAATGT+TGG - chr3_2:67512879-67512898 Msa0419420:intron 40.0%
GCATACTTCACCCTGTAAAA+AGG + chr3_2:67512994-67513013 None:intergenic 40.0%
!! AGCCTTCTGAAAGTTTTCAC+CGG + chr3_2:67513056-67513075 None:intergenic 40.0%
CAAAATGCATTCGGTATAGG+TGG - chr3_2:67513111-67513130 Msa0419420:intron 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr3_2:67513275-67513294 Msa0419420:intron 40.0%
TAAGACTTAAGGGAGACTAC+AGG + chr3_2:67513423-67513442 None:intergenic 40.0%
!! AACAGGCAAAAGCATTGCAA+TGG - chr3_2:67513476-67513495 Msa0419420:intron 40.0%
AACACAATTGAAACCTGCAC+CGG - chr3_2:67513554-67513573 Msa0419420:intron 40.0%
GAGAGAGAAAACGAATTCTG+TGG - chr3_2:67513660-67513679 Msa0419420:intron 40.0%
AGAAAACGAATTCTGTGGGA+AGG - chr3_2:67513665-67513684 Msa0419420:intron 40.0%
!! GGGTGTTGAATGAAAACCAT+TGG - chr3_2:67514105-67514124 Msa0419420:CDS 40.0%
GTGAGAGGAAAGATTGTAAG+AGG - chr3_2:67514266-67514285 Msa0419420:intron 40.0%
! AGAAAGTTTTCGATGGTAGG+GGG + chr3_2:67514681-67514700 None:intergenic 40.0%
TCTTCTCAAATTAGGAGGGA+TGG - chr3_2:67514698-67514717 Msa0419420:intron 40.0%
CTTCTCAAATTAGGAGGGAT+GGG - chr3_2:67514699-67514718 Msa0419420:intron 40.0%
TTGGAACAGCTGATCATCTA+AGG + chr3_2:67514833-67514852 None:intergenic 40.0%
TAAGAGACTAAGGGTCTGTT+TGG + chr3_2:67514852-67514871 None:intergenic 40.0%
AAACAGACCCTTAGTCTCTT+AGG - chr3_2:67514851-67514870 Msa0419420:CDS 40.0%
GAATCTGCCTAAGAGACTAA+GGG + chr3_2:67514861-67514880 None:intergenic 40.0%
AGAATCTGCCTAAGAGACTA+AGG + chr3_2:67514862-67514881 None:intergenic 40.0%
!! GTTTGGTTGTGGATTGGAGA+TGG + chr3_2:67510039-67510058 None:intergenic 45.0%
TCCAATCCACAACCAAACCA+GGG - chr3_2:67510041-67510060 Msa0419420:three_prime_UTR 45.0%
!! AGTGGTGATGATGGGTTATG+GGG + chr3_2:67510119-67510138 None:intergenic 45.0%
!! GAGTGGTGATGATGGGTTAT+GGG + chr3_2:67510120-67510139 None:intergenic 45.0%
!! AGAGTGGTGATGATGGGTTA+TGG + chr3_2:67510121-67510140 None:intergenic 45.0%
! GGTGAAAAGAGTGGTGATGA+TGG + chr3_2:67510128-67510147 None:intergenic 45.0%
TTGTCCATTATGCATGCGAG+AGG - chr3_2:67510690-67510709 Msa0419420:intron 45.0%
TGTACCTCTCGCATGCATAA+TGG + chr3_2:67510697-67510716 None:intergenic 45.0%
TTGTCACCGATGTCGAAGTA+TGG - chr3_2:67511284-67511303 Msa0419420:intron 45.0%
ACTTCTATGTAACCCCGGAA+TGG - chr3_2:67511542-67511561 Msa0419420:intron 45.0%
! GAAAGTTTTCACCGGTCAGA+TGG + chr3_2:67513048-67513067 None:intergenic 45.0%
GACCGGTGAAAACTTTCAGA+AGG - chr3_2:67513051-67513070 Msa0419420:intron 45.0%
AAACGAATTCTGTGGGAAGG+AGG - chr3_2:67513668-67513687 Msa0419420:intron 45.0%
AACGAATTCTGTGGGAAGGA+GGG - chr3_2:67513669-67513688 Msa0419420:intron 45.0%
GACAAGTGGTGCAACATGAT+TGG - chr3_2:67513691-67513710 Msa0419420:CDS 45.0%
GAGAAGATGATGTGGAGTGT+TGG - chr3_2:67514162-67514181 Msa0419420:intron 45.0%
GGATCACCAAAGAAAGTGAG+AGG - chr3_2:67514251-67514270 Msa0419420:intron 45.0%
! GAAAGTTTTCGATGGTAGGG+GGG + chr3_2:67514680-67514699 None:intergenic 45.0%
TGGTTGCACAAGATAGAGGA+AGG + chr3_2:67514759-67514778 None:intergenic 45.0%
! GGTTTGGTTGCACAAGATAG+AGG + chr3_2:67514763-67514782 None:intergenic 45.0%
!!! ATTTATTTTTTAGTTTAAAA+TGG + chr3_2:67513981-67514000 None:intergenic 5.0%
!!! TTATATTTTATTTTACTTAA+GGG + chr3_2:67514427-67514446 None:intergenic 5.0%
!!! TTTATATTTTATTTTACTTA+AGG + chr3_2:67514428-67514447 None:intergenic 5.0%
!! GGTTGTGGATTGGAGATGGA+AGG + chr3_2:67510035-67510054 None:intergenic 50.0%
CTCCAATCCACAACCAAACC+AGG - chr3_2:67510040-67510059 Msa0419420:three_prime_UTR 50.0%
!! TCCCTGGTTTGGTTGTGGAT+TGG + chr3_2:67510045-67510064 None:intergenic 50.0%
GTGAAAGATGAGGACGGAGA+TGG + chr3_2:67510172-67510191 None:intergenic 50.0%
GGGATACCGGGTTTGAGAAT+AGG + chr3_2:67510218-67510237 None:intergenic 50.0%
TTACTCTCCCGACGAGAATC+AGG - chr3_2:67510931-67510950 Msa0419420:intron 50.0%
TACTCTCCCGACGAGAATCA+GGG - chr3_2:67510932-67510951 Msa0419420:intron 50.0%
GATTGGTGCATGCATGTGTG+AGG - chr3_2:67511158-67511177 Msa0419420:intron 50.0%
AAAGATGCAGCAGCCATTCC+GGG + chr3_2:67511558-67511577 None:intergenic 50.0%
CAAAGATGCAGCAGCCATTC+CGG + chr3_2:67511559-67511578 None:intergenic 50.0%
TAGTTGGACTTGGGCTGATG+TGG - chr3_2:67512096-67512115 Msa0419420:intron 50.0%
GTGAGCAAGACTTGCCTCTA+TGG - chr3_2:67512309-67512328 Msa0419420:intron 50.0%
CTGCTTCATTGGCCAAAACC+TGG - chr3_2:67513590-67513609 Msa0419420:intron 50.0%
GAGGGATGGGAATCTTGTGT+GGG - chr3_2:67514712-67514731 Msa0419420:intron 50.0%
GTGTGGGACCCAGAAAAAAG+TGG - chr3_2:67514728-67514747 Msa0419420:intron 50.0%
CGGCGTGTGAAAGATGAGGA+CGG + chr3_2:67510178-67510197 None:intergenic 55.0%
! GCATCGGCGTGTGAAAGATG+AGG + chr3_2:67510182-67510201 None:intergenic 55.0%
AAGATGCAGCAGCCATTCCG+GGG + chr3_2:67511557-67511576 None:intergenic 55.0%
TCTTCGATAGGTGGTCGTCC+TGG + chr3_2:67512402-67512421 None:intergenic 55.0%
TGCACACTCACGCTCCTTGT+CGG + chr3_2:67513633-67513652 None:intergenic 55.0%
GGAGGGATGGGAATCTTGTG+TGG - chr3_2:67514711-67514730 Msa0419420:intron 55.0%
TCGAGGCCCTGATTCTCGTC+GGG + chr3_2:67510941-67510960 None:intergenic 60.0%
GTCGAGGCCCTGATTCTCGT+CGG + chr3_2:67510942-67510961 None:intergenic 60.0%
! GTGCTACACGCGCCAGGTTT+TGG + chr3_2:67513605-67513624 None:intergenic 60.0%
! CAAGGAGCGTGAGTGTGCAG+AGG - chr3_2:67513634-67513653 Msa0419420:intron 60.0%
GAGCGTGAGTGTGCAGAGGA+CGG - chr3_2:67513638-67513657 Msa0419420:intron 60.0%
CTGTGGGAAGGAGGGACAAG+TGG - chr3_2:67513677-67513696 Msa0419420:intron 60.0%
AACCTGCACCGGATGCCACG+CGG - chr3_2:67513565-67513584 Msa0419420:intron 65.0%
! GTGTAGCACACGCGCCGACA+AGG - chr3_2:67513616-67513635 Msa0419420:intron 65.0%
AAGCAGCGCCGCGTGGCATC+CGG + chr3_2:67513576-67513595 None:intergenic 70.0%
GCCACGCGGCGCTGCTTCAT+TGG - chr3_2:67513579-67513598 Msa0419420:intron 70.0%
GCCAATGAAGCAGCGCCGCG+TGG + chr3_2:67513583-67513602 None:intergenic 70.0%
GCGCGTGTGCTACACGCGCC+AGG + chr3_2:67513611-67513630 None:intergenic 75.0%
! CGCCGCGTGGCATCCGGTGC+AGG + chr3_2:67513570-67513589 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 67510006 67514984 67510006 ID=Msa0419420;Name=Msa0419420
chr3_2 mRNA 67510006 67514984 67510006 ID=Msa0419420-mRNA-1;Parent=Msa0419420;Name=Msa0419420-mRNA-1;_AED=0.19;_eAED=0.19;_QI=65|1|1|1|0.77|0.7|10|340|225
chr3_2 exon 67510006 67510133 67510006 ID=Msa0419420-mRNA-1:exon:15749;Parent=Msa0419420-mRNA-1
chr3_2 exon 67511554 67511628 67511554 ID=Msa0419420-mRNA-1:exon:15748;Parent=Msa0419420-mRNA-1
chr3_2 exon 67511813 67511988 67511813 ID=Msa0419420-mRNA-1:exon:15747;Parent=Msa0419420-mRNA-1
chr3_2 exon 67512544 67512587 67512544 ID=Msa0419420-mRNA-1:exon:15746;Parent=Msa0419420-mRNA-1
chr3_2 exon 67513006 67513066 67513006 ID=Msa0419420-mRNA-1:exon:15745;Parent=Msa0419420-mRNA-1
chr3_2 exon 67513182 67513247 67513182 ID=Msa0419420-mRNA-1:exon:15744;Parent=Msa0419420-mRNA-1
chr3_2 exon 67513690 67513746 67513690 ID=Msa0419420-mRNA-1:exon:15743;Parent=Msa0419420-mRNA-1
chr3_2 exon 67514020 67514127 67514020 ID=Msa0419420-mRNA-1:exon:15742;Parent=Msa0419420-mRNA-1
chr3_2 exon 67514279 67514421 67514279 ID=Msa0419420-mRNA-1:exon:15741;Parent=Msa0419420-mRNA-1
chr3_2 exon 67514760 67514984 67514760 ID=Msa0419420-mRNA-1:exon:15740;Parent=Msa0419420-mRNA-1
chr3_2 five_prime_UTR 67514920 67514984 67514920 ID=Msa0419420-mRNA-1:five_prime_utr;Parent=Msa0419420-mRNA-1
chr3_2 CDS 67514760 67514919 67514760 ID=Msa0419420-mRNA-1:cds;Parent=Msa0419420-mRNA-1
chr3_2 CDS 67514279 67514421 67514279 ID=Msa0419420-mRNA-1:cds;Parent=Msa0419420-mRNA-1
chr3_2 CDS 67514020 67514127 67514020 ID=Msa0419420-mRNA-1:cds;Parent=Msa0419420-mRNA-1
chr3_2 CDS 67513690 67513746 67513690 ID=Msa0419420-mRNA-1:cds;Parent=Msa0419420-mRNA-1
chr3_2 CDS 67513182 67513247 67513182 ID=Msa0419420-mRNA-1:cds;Parent=Msa0419420-mRNA-1
chr3_2 CDS 67513006 67513066 67513006 ID=Msa0419420-mRNA-1:cds;Parent=Msa0419420-mRNA-1
chr3_2 CDS 67512544 67512587 67512544 ID=Msa0419420-mRNA-1:cds;Parent=Msa0419420-mRNA-1
chr3_2 CDS 67511950 67511988 67511950 ID=Msa0419420-mRNA-1:cds;Parent=Msa0419420-mRNA-1
chr3_2 three_prime_UTR 67511813 67511949 67511813 ID=Msa0419420-mRNA-1:three_prime_utr;Parent=Msa0419420-mRNA-1
chr3_2 three_prime_UTR 67511554 67511628 67511554 ID=Msa0419420-mRNA-1:three_prime_utr;Parent=Msa0419420-mRNA-1
chr3_2 three_prime_UTR 67510006 67510133 67510006 ID=Msa0419420-mRNA-1:three_prime_utr;Parent=Msa0419420-mRNA-1
Gene Sequence

>Msa0419420

ATGTCTTTCAGAATCGCAGCAGTTTCTGCTTCTCGTATTGCAAAACCCCATAACCCATCATCACCACTCTTTTCACCTCCATTTCACAATCTTAAATTCCATCTCCGTCCTCATCTTTCACACGCCGATGCTTTTCCAACACTTCCTATTCTCAAACCCGGGTCTCAATGTTATATTCGAGCTATTAGTGATAGAGCTGTAGAATCTACAATTTCTAAGAAAGAAGAGGAGGGAGAACAGTCTCCTAAAGATTGGAAGATTAAAATGCTATATGATGGAGATTGTCCATTATGCATGCGAGAGGTGAATATGCTACGAGAGAAGAATAAGAGTTATGGCACCATCAAGTTTGTTGATATAGGCTCAGATGATTACTCTCCCGACGAGAATCAGGGCCTCGACTATCAAACTGCTATGGGAAGAATTCATGCTATTCTATCAGATGGAACTGTTGTCACCGATGTCGAAGCGTTTAGGAGATTATATGAACAAGTTGGTCTTGGTTGGGTTTACGCCATTACAAAATATGAACCGATTGGGAAAATTGCTGATTCTGTATATAGTTTTTGGGCTAAATACCGTCTTCAAGTTACAGGACGACCACCTATCGAAGAAATATTAGAAGCTCGAAGAAAGAAGGGTGAAGTATGCAAAGACAACGATGCTTGCAAGATGTAA

Protein sequence

>Msa0419420

MSFRIAAVSASRIAKPHNPSSPLFSPPFHNLKFHLRPHLSHADAFPTLPILKPGSQCYIRAISDRAVESTISKKEEEGEQSPKDWKIKMLYDGDCPLCMREVNMLREKNKSYGTIKFVDIGSDDYSPDENQGLDYQTAMGRIHAILSDGTVVTDVEAFRRLYEQVGLGWVYAITKYEPIGKIADSVYSFWAKYRLQVTGRPPIEEILEARRKKGEVCKDNDACKM*