AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1194480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1194480 MtrunA17_Chr4g0057081 96.013 301 12 0 1 301 51 351 0.0 593
Msa1194480 MtrunA17_Chr5g0398281 78.947 266 51 3 36 299 29 291 9.60e-153 430
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1194480 AT4G22890.2 80.916 262 45 3 40 301 46 302 3.45e-154 433
Msa1194480 AT4G22890.1 81.226 261 44 3 40 300 46 301 7.97e-154 433
Msa1194480 AT4G22890.3 81.226 261 44 3 40 300 46 301 7.97e-154 433
Msa1194480 AT4G22890.4 80.843 261 42 3 40 300 46 298 6.98e-153 431
Msa1194480 AT4G22890.5 80.460 261 44 3 40 300 46 299 5.08e-152 428
Msa1194480 AT4G11960.1 74.237 295 70 4 7 300 1 290 1.08e-147 417
Msa1194480 AT4G11960.2 83.691 233 37 1 68 300 42 273 2.14e-142 403
Msa1194480 AT5G59400.1 29.412 187 100 7 139 299 75 255 5.67e-11 62.8

Find 135 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCTTTGTCGCTCAAAAT+TGG 0.191899 8_1:-41685672 None:intergenic
TCTGCATCGGAAACTGAATT+TGG 0.203024 8_1:-41684085 None:intergenic
AAAATTTCTTGAAGCTTCTA+TGG 0.224918 8_1:+41685632 Msa1194480:CDS
TCGAATTCGGGATCGGGATT+AGG 0.231335 8_1:+41684229 Msa1194480:five_prime_UTR
ACTGAAAATACCTCCTTCTT+TGG 0.249747 8_1:+41687983 Msa1194480:CDS
AAATGAGGTGAGACAGTAAA+TGG 0.264956 8_1:+41684355 Msa1194480:five_prime_UTR
TTCTTCCTTGATGATATAAC+TGG 0.275096 8_1:+41687319 Msa1194480:CDS
AGAATGGAATAAAGGGAGTT+TGG 0.277890 8_1:-41684660 None:intergenic
TTCCAGATCGAGATCGAATT+CGG 0.292727 8_1:+41684216 Msa1194480:five_prime_UTR
GCTTCTATGGCTTATGTATC+TGG 0.293115 8_1:+41685645 Msa1194480:CDS
GGTATAGGCGTTCTTTCTTC+TGG 0.302007 8_1:+41684286 Msa1194480:five_prime_UTR
CGAATTCGGGATCGGGATTA+GGG 0.304213 8_1:+41684230 Msa1194480:five_prime_UTR
AATCACAAAATCTTTGATAA+TGG 0.309190 8_1:-41687860 None:intergenic
CCAGCCACTGTGGTTGCATT+AGG 0.325068 8_1:+41686509 Msa1194480:CDS
GATTCGAAAATTAGATTGAA+TGG 0.331300 8_1:-41684026 None:intergenic
ATCCAACGGTTGTTGAGGTT+TGG 0.359805 8_1:+41684165 Msa1194480:five_prime_UTR
TCATCCTCTTACTACAGTTC+TGG 0.360990 8_1:+41684324 Msa1194480:five_prime_UTR
GAATGGAATAAAGGGAGTTT+GGG 0.363798 8_1:-41684659 None:intergenic
GTGCAGCCTTCGAAGTAAAA+AGG 0.365618 8_1:+41686046 Msa1194480:CDS
TTAACAGTCATTCTATTATG+AGG 0.366346 8_1:+41685409 Msa1194480:intron
CTTTCCAGAACTGTAGTAAG+AGG 0.373815 8_1:-41684328 None:intergenic
CAAGTGAAAATGAAACTAAA+AGG 0.380242 8_1:-41687787 None:intergenic
TGTTGATCTGCAGTGGCTTT+AGG 0.383078 8_1:-41684757 None:intergenic
AGAGCATTTGACTTTGTTGT+TGG 0.383266 8_1:-41688035 None:intergenic
CGGTGATCTTCGTCGGATAC+AGG 0.388813 8_1:+41683916 Msa1194480:five_prime_UTR
TCGGGATTAGGGTTAGGATT+GGG 0.406072 8_1:+41684241 Msa1194480:five_prime_UTR
CTGAAAATACCTCCTTCTTT+GGG 0.406319 8_1:+41687984 Msa1194480:CDS
TTTGATCTATGCTACAATAT+GGG 0.409201 8_1:-41685080 None:intergenic
TCATCTTCTGCATCGGATAC+AGG 0.421563 8_1:+41683961 Msa1194480:five_prime_UTR
CCTAATGCAACCACAGTGGC+TGG 0.425616 8_1:-41686509 None:intergenic
TTAGGGTTAGGATTGGGATT+GGG 0.427133 8_1:+41684247 Msa1194480:five_prime_UTR
TTCAGTTCCGCAGTTTGGAC+AGG 0.427658 8_1:-41687966 None:intergenic
ATTGGGATTGGGAATGGTTG+AGG 0.428097 8_1:+41684258 Msa1194480:five_prime_UTR
CTGCATCGGAAACTGAATTT+GGG 0.438313 8_1:-41684084 None:intergenic
TTTCAAAGACAGTTGGCAAC+CGG 0.441146 8_1:-41684439 None:intergenic
TCGGGATCGGGATTAGGGTT+AGG 0.441889 8_1:+41684235 Msa1194480:five_prime_UTR
TCGAGATCGAATTCGGGATC+GGG 0.453351 8_1:+41684223 Msa1194480:five_prime_UTR
GGCGCCGGCAGGATTCGATT+TGG 0.454204 8_1:+41684114 Msa1194480:five_prime_UTR
ATCGAGATCGAATTCGGGAT+CGG 0.455294 8_1:+41684222 Msa1194480:five_prime_UTR
TCCAGATCGAGATCGAATTC+GGG 0.460052 8_1:+41684217 Msa1194480:five_prime_UTR
GGTGCAGAACATGGAGGAGG+GGG 0.462753 8_1:-41684637 None:intergenic
CAGTGGCTGGGACGTTCAGC+AGG 0.463026 8_1:-41686496 None:intergenic
ATTCGAAAATTAGATTGAAT+GGG 0.464964 8_1:-41684025 None:intergenic
AGAGTAGTTGCTTGGAGATA+AGG 0.468832 8_1:-41684498 None:intergenic
AATGAGGTGAGACAGTAAAT+GGG 0.469355 8_1:+41684356 Msa1194480:five_prime_UTR
TGTTAAAGTGAAGGCTACTT+TGG 0.472750 8_1:-41684614 None:intergenic
TAAGTTGAAACTGAATCTAA+AGG 0.474896 8_1:+41685698 Msa1194480:CDS
TTGGGAATGGTTGAGGAAGA+AGG 0.481759 8_1:+41684265 Msa1194480:five_prime_UTR
GTTAGGATTGGGATTGGGAA+TGG 0.483600 8_1:+41684252 Msa1194480:five_prime_UTR
TAACAGTCATTCTATTATGA+GGG 0.484496 8_1:+41685410 Msa1194480:intron
TGGGGTGCAGAACATGGAGG+AGG 0.491120 8_1:-41684640 None:intergenic
TCCCGAATTCGATCTCGATC+TGG 0.492294 8_1:-41684218 None:intergenic
GTATGAAAGTGAAGAGGAAG+AGG 0.496234 8_1:-41684062 None:intergenic
ATTAGGGTTAGGATTGGGAT+TGG 0.497119 8_1:+41684246 Msa1194480:five_prime_UTR
GGGAGTGAAATTGTTGTTGA+GGG 0.502581 8_1:+41686017 Msa1194480:CDS
GCAGAGACAGTGGCGCCGGC+AGG 0.506364 8_1:+41684103 Msa1194480:five_prime_UTR
GGGTGCAGAACATGGAGGAG+GGG 0.507293 8_1:-41684638 None:intergenic
TCGGATACAGGCGGCGACGG+AGG 0.509570 8_1:+41683928 Msa1194480:five_prime_UTR
GAAAATGAAACTAAAAGGCT+CGG 0.513601 8_1:-41687782 None:intergenic
GCGGCGAAGGCATACGTGGC+GGG 0.513672 8_1:-41684716 None:intergenic
ATCGGGATTAGGGTTAGGAT+TGG 0.513980 8_1:+41684240 Msa1194480:five_prime_UTR
GGAGTTTGGGGTGCAGAACA+TGG 0.522105 8_1:-41684646 None:intergenic
ACAGGCGGCAACGGAGGAGA+AGG 0.535875 8_1:+41683979 Msa1194480:five_prime_UTR
GTCATTCTATTATGAGGGAA+AGG 0.537540 8_1:+41685415 Msa1194480:intron
TGAAGAGGAAGAGGATGAAG+AGG 0.539186 8_1:-41684053 None:intergenic
CAGTGGCTTTAGGCGAAAGT+AGG 0.539506 8_1:-41684747 None:intergenic
GCATCGGATACAGGCGGCAA+CGG 0.540294 8_1:+41683970 Msa1194480:five_prime_UTR
CAAATCCAGTTATATCATCA+AGG 0.541384 8_1:-41687324 None:intergenic
CGGATACAGGCGGCGACGGA+GGG 0.544792 8_1:+41683929 Msa1194480:five_prime_UTR
CGGCGCCACTGTCTCTGCAT+CGG 0.546447 8_1:-41684098 None:intergenic
AAGACAGTTGGCAACCGGCT+AGG 0.549811 8_1:-41684434 None:intergenic
CGATGCAGAGACAGTGGCGC+CGG 0.550948 8_1:+41684099 Msa1194480:five_prime_UTR
ATGGTTGAGGAAGAAGGTAT+AGG 0.551649 8_1:+41684271 Msa1194480:five_prime_UTR
GGGGTGCAGAACATGGAGGA+GGG 0.555413 8_1:-41684639 None:intergenic
ATGAGGTGAGACAGTAAATG+GGG 0.556068 8_1:+41684357 Msa1194480:five_prime_UTR
ATCCAAACCTCAACAACCGT+TGG 0.559731 8_1:-41684167 None:intergenic
TTGATATCCAACGGTTGTTG+AGG 0.560071 8_1:+41684160 Msa1194480:five_prime_UTR
ATCTCAAGGAGGAACTTATG+TGG 0.560599 8_1:+41685465 Msa1194480:CDS
TACTTTGGTAGCAGTGAACA+TGG 0.562646 8_1:-41684599 None:intergenic
TTCTTGCTCAAGTTCACCAA+CGG 0.563076 8_1:-41685118 None:intergenic
TCAGTTCCGCAGTTTGGACA+GGG 0.564708 8_1:-41687965 None:intergenic
TGAGATCACTTATTTGCTAG+AGG 0.565242 8_1:+41687345 Msa1194480:CDS
TCGGATACAGGCGGCAACGG+AGG 0.569882 8_1:+41683973 Msa1194480:five_prime_UTR
GTAGGAGTAATCTGCGGCGA+AGG 0.572243 8_1:-41684729 None:intergenic
TGACAGTATAGTCCCAAAGA+AGG 0.573955 8_1:-41687996 None:intergenic
AGGGAGTGAAATTGTTGTTG+AGG 0.575033 8_1:+41686016 Msa1194480:CDS
TTTGCGGCGGTGATCTTCGT+CGG 0.575399 8_1:+41683909 Msa1194480:five_prime_UTR
TCGTCGGATACAGGCGGCGA+CGG 0.576304 8_1:+41683925 Msa1194480:five_prime_UTR
AAAATGAAACTAAAAGGCTC+GGG 0.577266 8_1:-41687781 None:intergenic
ATCTAGCTCTATCACTAACA+AGG 0.579354 8_1:+41687836 Msa1194480:CDS
GTCGCAATCATCTTCTGCAT+CGG 0.580445 8_1:+41683954 Msa1194480:five_prime_UTR
CTAATGCAACCACAGTGGCT+GGG 0.581180 8_1:-41686508 None:intergenic
TCTCAAGGAGGAACTTATGT+GGG 0.582901 8_1:+41685466 Msa1194480:CDS
TGAAGAATTTGATAATCTCA+AGG 0.586912 8_1:+41685451 Msa1194480:CDS
TTACTTCGAAGGCTGCACCT+TGG 0.594902 8_1:-41686041 None:intergenic
TCTAGCTCTATCACTAACAA+GGG 0.599765 8_1:+41687837 Msa1194480:CDS
ATCTGCGGCGAAGGCATACG+TGG 0.603458 8_1:-41684720 None:intergenic
AAAACCAAATCGAATCCTGC+CGG 0.604286 8_1:-41684118 None:intergenic
ATACTGTCAATTTCAAGTGG+TGG 0.605247 8_1:+41688010 Msa1194480:CDS
AAATTGTTGTTGAGGGTCCA+AGG 0.606961 8_1:+41686024 Msa1194480:CDS
GATACCTTGTTGATCTGCAG+TGG 0.611032 8_1:-41684764 None:intergenic
AAGGAGGAACTTATGTGGGA+AGG 0.615460 8_1:+41685470 Msa1194480:CDS
TAGAGCTAGATATACAATGA+GGG 0.616671 8_1:-41687824 None:intergenic
TGAGGTGAGACAGTAAATGG+GGG 0.621109 8_1:+41684358 Msa1194480:five_prime_UTR
AAGGCAATGAGAACGTGTGG+AGG 0.623604 8_1:-41684479 None:intergenic
GATAAGGCAATGAGAACGTG+TGG 0.626746 8_1:-41684482 None:intergenic
GTTCTGGAAAGAAATAAATG+AGG 0.627766 8_1:+41684340 Msa1194480:five_prime_UTR
TCTTTAAATAGTCAACAGAC+AGG 0.629626 8_1:-41686469 None:intergenic
GATCTATGCTACAATATGGG+AGG 0.633005 8_1:-41685077 None:intergenic
ACTATACTGTCAATTTCAAG+TGG 0.637003 8_1:+41688007 Msa1194480:CDS
ACGTGTGGAGGGAAATGCAA+CGG 0.638647 8_1:-41684467 None:intergenic
AGTTTCCGATGCAGAGACAG+TGG 0.639561 8_1:+41684093 Msa1194480:five_prime_UTR
AATCTAGCGTTGATATCCAA+CGG 0.645227 8_1:+41684151 Msa1194480:five_prime_UTR
AGGCAATGAGAACGTGTGGA+GGG 0.645810 8_1:-41684478 None:intergenic
CAGTATAGTCCCAAAGAAGG+AGG 0.645974 8_1:-41687993 None:intergenic
ATAGAGCTAGATATACAATG+AGG 0.647386 8_1:-41687825 None:intergenic
GCAGTGAACATGGTGAATGG+TGG 0.648017 8_1:-41684589 None:intergenic
GTAGCAGTGAACATGGTGAA+TGG 0.651238 8_1:-41684592 None:intergenic
AGAGCTAGATATACAATGAG+GGG 0.654956 8_1:-41687823 None:intergenic
TGCGGCGAAGGCATACGTGG+CGG 0.660060 8_1:-41684717 None:intergenic
ATTTGGGTATGAAAGTGAAG+AGG 0.662435 8_1:-41684068 None:intergenic
TGTAGTAAGAGGATGAGTCG+AGG 0.667945 8_1:-41684317 None:intergenic
AATGGAATAAAGGGAGTTTG+GGG 0.668538 8_1:-41684658 None:intergenic
GAGGTGAGACAGTAAATGGG+GGG 0.669143 8_1:+41684359 Msa1194480:five_prime_UTR
CTAATACACATACGAACCAG+TGG 0.676394 8_1:+41683807 Msa1194480:five_prime_UTR
AAGGGTCCCTGTCCAAACTG+CGG 0.678881 8_1:+41687959 Msa1194480:intron
ACGTGGCGGGAGTTGAAGTG+AGG 0.680548 8_1:-41684703 None:intergenic
TGATCTTCGTCGGATACAGG+CGG 0.685091 8_1:+41683919 Msa1194480:five_prime_UTR
AAAGCCACTGCAGATCAACA+AGG 0.689088 8_1:+41684760 Msa1194480:CDS
TCTTCTGCATCGGATACAGG+CGG 0.693921 8_1:+41683964 Msa1194480:five_prime_UTR
GCTGAACGTCCCAGCCACTG+TGG 0.709181 8_1:+41686499 Msa1194480:CDS
GTTTGGGGTGCAGAACATGG+AGG 0.719853 8_1:-41684643 None:intergenic
AGAATTTGATAATCTCAAGG+AGG 0.725675 8_1:+41685454 Msa1194480:CDS
CAATCCTAATGCAACCACAG+TGG 0.746857 8_1:-41686513 None:intergenic
GCGAAAGTAGGAGTAATCTG+CGG 0.775526 8_1:-41684735 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTATTTTTTTTGAC+TGG + chr8_1:41683886-41683905 Msa1194480:five_prime_UTR 10.0%
!!! AAAATTTGTTTTGTTTAATT+TGG - chr8_1:41684551-41684570 None:intergenic 10.0%
!!! AATATCTTTTTCATTATAAT+TGG - chr8_1:41687707-41687726 None:intergenic 10.0%
!!! CTGATTATTTAAATTTTAAA+AGG + chr8_1:41687940-41687959 Msa1194480:intron 10.0%
!!! TAAACAAAACAAATTTTTCT+CGG + chr8_1:41684554-41684573 Msa1194480:five_prime_UTR 15.0%
!!! ATTTTATTTTGTGTGTAAAT+TGG + chr8_1:41684804-41684823 Msa1194480:intron 15.0%
!! ATAAAATAGATAAAATGACA+TGG - chr8_1:41684933-41684952 None:intergenic 15.0%
!! ACTCTTATATATATGAATAA+TGG + chr8_1:41685538-41685557 Msa1194480:intron 15.0%
!!! ATTTGTTTATATTTGAGATT+GGG + chr8_1:41686218-41686237 Msa1194480:intron 15.0%
!!! TATAACAGATATTGATATTT+TGG + chr8_1:41687741-41687760 Msa1194480:intron 15.0%
!!! TATTAGTATCTGTTTTACTA+GGG - chr8_1:41683793-41683812 None:intergenic 20.0%
!! ATTCGAAAATTAGATTGAAT+GGG - chr8_1:41684028-41684047 None:intergenic 20.0%
!!! TTTGGAGTGTTAAAAAAAAT+GGG - chr8_1:41684533-41684552 None:intergenic 20.0%
!!! ATTTGGAGTGTTAAAAAAAA+TGG - chr8_1:41684534-41684553 None:intergenic 20.0%
!! GATAAGTATTAAGTAAAAAG+TGG - chr8_1:41684998-41685017 None:intergenic 20.0%
!!! ATACTTATCATTTTTCTTTC+AGG + chr8_1:41685009-41685028 Msa1194480:intron 20.0%
!!! TACTTATCATTTTTCTTTCA+GGG + chr8_1:41685010-41685029 Msa1194480:intron 20.0%
!! AAGAAAATAAGAAACAAGTT+TGG - chr8_1:41685174-41685193 None:intergenic 20.0%
!!! TTATTTTCGTATAATCTGTA+TGG + chr8_1:41685226-41685245 Msa1194480:intron 20.0%
!!! CTATATTCTTATTTCAGTTT+TGG + chr8_1:41686087-41686106 Msa1194480:intron 20.0%
!!! GATTTGTTTATATTTGAGAT+TGG + chr8_1:41686217-41686236 Msa1194480:intron 20.0%
!!! TTTGTTTATATTTGAGATTG+GGG + chr8_1:41686219-41686238 Msa1194480:intron 20.0%
!!! ACTTATTACAGTCTTTTTAT+AGG + chr8_1:41686436-41686455 Msa1194480:intron 20.0%
!! TAAATGATAAAACGTATGTA+GGG - chr8_1:41686559-41686578 None:intergenic 20.0%
!! ATAAATGATAAAACGTATGT+AGG - chr8_1:41686560-41686579 None:intergenic 20.0%
!! TGTTATATGATCATATATCA+TGG - chr8_1:41686934-41686953 None:intergenic 20.0%
!! ATGGAGATTATAAAATATGT+AGG - chr8_1:41687159-41687178 None:intergenic 20.0%
!! ACAAAAATTGGATACTAATA+TGG - chr8_1:41687178-41687197 None:intergenic 20.0%
!! AATAATAAGTATGCAATTCT+AGG - chr8_1:41687392-41687411 None:intergenic 20.0%
!! AGAATTGCATACTTATTATT+TGG + chr8_1:41687392-41687411 Msa1194480:intron 20.0%
!! GAATTGCATACTTATTATTT+GGG + chr8_1:41687393-41687412 Msa1194480:intron 20.0%
!! AATAAAATGTTAGAAAGGAA+AGG - chr8_1:41687473-41687492 None:intergenic 20.0%
!!! TTTATTGCCTTTTAAATCTA+TGG + chr8_1:41687487-41687506 Msa1194480:intron 20.0%
!! TATTATAAAATATGATTCGC+TGG - chr8_1:41687629-41687648 None:intergenic 20.0%
!! AATCACAAAATCTTTGATAA+TGG - chr8_1:41687863-41687882 None:intergenic 20.0%
!!! CAAAGATTTTGTGATTTTAA+AGG + chr8_1:41687867-41687886 Msa1194480:CDS 20.0%
!! GTATTAGTATCTGTTTTACT+AGG - chr8_1:41683794-41683813 None:intergenic 25.0%
!!! ATTTTTTACTGTAGATGCTT+TGG - chr8_1:41683847-41683866 None:intergenic 25.0%
!!! TATTTTTTTTGACTGGTTTG+CGG + chr8_1:41683893-41683912 Msa1194480:five_prime_UTR 25.0%
! GATTCGAAAATTAGATTGAA+TGG - chr8_1:41684029-41684048 None:intergenic 25.0%
!! TTGGAGTGTTAAAAAAAATG+GGG - chr8_1:41684532-41684551 None:intergenic 25.0%
! GAAAAAGAGAATGGAATAAA+GGG - chr8_1:41684670-41684689 None:intergenic 25.0%
! AGAAAAAGAGAATGGAATAA+AGG - chr8_1:41684671-41684690 None:intergenic 25.0%
! AAGTATTAAGTAAAAAGTGG+AGG - chr8_1:41684995-41685014 None:intergenic 25.0%
! TTTGATCTATGCTACAATAT+GGG - chr8_1:41685083-41685102 None:intergenic 25.0%
!! TTTTGATCTATGCTACAATA+TGG - chr8_1:41685084-41685103 None:intergenic 25.0%
! TTGTAGCATAGATCAAAAAA+AGG + chr8_1:41685086-41685105 Msa1194480:CDS 25.0%
! AAATAAGAAACAAGTTTGGT+GGG - chr8_1:41685170-41685189 None:intergenic 25.0%
! AAAATAAGAAACAAGTTTGG+TGG - chr8_1:41685171-41685190 None:intergenic 25.0%
! TTAACAGTCATTCTATTATG+AGG + chr8_1:41685409-41685428 Msa1194480:intron 25.0%
! TAACAGTCATTCTATTATGA+GGG + chr8_1:41685410-41685429 Msa1194480:intron 25.0%
!! TGAAGAATTTGATAATCTCA+AGG + chr8_1:41685451-41685470 Msa1194480:CDS 25.0%
! AAAATTTCTTGAAGCTTCTA+TGG + chr8_1:41685632-41685651 Msa1194480:CDS 25.0%
!! TAAGTTGAAACTGAATCTAA+AGG + chr8_1:41685698-41685717 Msa1194480:CDS 25.0%
! AGATGTAGTACTATATCATT+TGG + chr8_1:41685815-41685834 Msa1194480:intron 25.0%
! TATCATTTGGACCAAATTAA+AGG + chr8_1:41685828-41685847 Msa1194480:intron 25.0%
! AGTTGATCTAACCTTTAATT+TGG - chr8_1:41685842-41685861 None:intergenic 25.0%
!!! ATCAGTTCTATTTGTTATAC+TGG + chr8_1:41685894-41685913 Msa1194480:intron 25.0%
!!! TCAGTTCTATTTGTTATACT+GGG + chr8_1:41685895-41685914 Msa1194480:intron 25.0%
! CAATGCTGAATAATAAATAC+AGG + chr8_1:41686166-41686185 Msa1194480:intron 25.0%
!!! GCATTTTATTTGACATGAAA+TGG - chr8_1:41686315-41686334 None:intergenic 25.0%
!!! TGACTTGTGTTGATTTATAA+TGG + chr8_1:41686582-41686601 Msa1194480:intron 25.0%
!! GTAGGAATCAAAATTTTTAC+TGG - chr8_1:41686653-41686672 None:intergenic 25.0%
! GAAAGTGAAAATAGAACATA+TGG + chr8_1:41686699-41686718 Msa1194480:intron 25.0%
!! CATTCATATATTTGATTTCG+AGG + chr8_1:41686782-41686801 Msa1194480:intron 25.0%
! ATCCATCTTTCTTAAATCAA+AGG + chr8_1:41687199-41687218 Msa1194480:intron 25.0%
!! AACCTTTGATTTAAGAAAGA+TGG - chr8_1:41687204-41687223 None:intergenic 25.0%
!!! TGAAAGTACATTTTTGCTTT+AGG + chr8_1:41687241-41687260 Msa1194480:intron 25.0%
! AAGGCAATAAAATGTTAGAA+AGG - chr8_1:41687478-41687497 None:intergenic 25.0%
! AGAAGATATAAAAACTCCAA+TGG - chr8_1:41687526-41687545 None:intergenic 25.0%
!!! GTTTTTTTTCCATCATCAAA+TGG - chr8_1:41687607-41687626 None:intergenic 25.0%
! CAAGTGAAAATGAAACTAAA+AGG - chr8_1:41687790-41687809 None:intergenic 25.0%
!!! CTTTTAGTTTCATTTTCACT+TGG + chr8_1:41687788-41687807 Msa1194480:CDS 25.0%
!!! GTTTTTTAACACGATTTTGT+AGG + chr8_1:41687895-41687914 Msa1194480:intron 25.0%
!! GTTCTGGAAAGAAATAAATG+AGG + chr8_1:41684340-41684359 Msa1194480:five_prime_UTR 30.0%
AAAAATGAAGAGTAGTTGCT+TGG - chr8_1:41684509-41684528 None:intergenic 30.0%
GAAACAGAAGAAAAAGAGAA+TGG - chr8_1:41684679-41684698 None:intergenic 30.0%
! ATCGTTTATTTGAGTCTTGT+TGG + chr8_1:41684832-41684851 Msa1194480:intron 30.0%
TTATCGAAAGAGAGACTTAA+TGG - chr8_1:41685197-41685216 None:intergenic 30.0%
! ATACTGTTCAACACAACTTT+TGG + chr8_1:41685346-41685365 Msa1194480:intron 30.0%
GATATCTGGACTAAAATTTG+TGG + chr8_1:41685368-41685387 Msa1194480:intron 30.0%
! AGAATTTGATAATCTCAAGG+AGG + chr8_1:41685454-41685473 Msa1194480:CDS 30.0%
TTGTTGAATTACTGTTGTGT+AGG + chr8_1:41685597-41685616 Msa1194480:intron 30.0%
!!! GAAAAGTCTTCTGTTTTTTG+TGG + chr8_1:41685752-41685771 Msa1194480:intron 30.0%
! ATTGTGTCACTGGTAATTAA+AGG + chr8_1:41685787-41685806 Msa1194480:intron 30.0%
GTCATATGACTGATATTAGT+AGG - chr8_1:41686250-41686269 None:intergenic 30.0%
CAAGTAGTGACAAGAAATAT+AGG + chr8_1:41686285-41686304 Msa1194480:intron 30.0%
ATTTACTAGAATTCACCTTC+AGG + chr8_1:41686341-41686360 Msa1194480:intron 30.0%
TCTTTAAATAGTCAACAGAC+AGG - chr8_1:41686472-41686491 None:intergenic 30.0%
AGTAGAATGTTGACATCAAA+TGG - chr8_1:41686624-41686643 None:intergenic 30.0%
ATCATATATTTGGCAGAAGT+AGG - chr8_1:41686671-41686690 None:intergenic 30.0%
ACTTCTGCCAAATATATGAT+TGG + chr8_1:41686671-41686690 Msa1194480:intron 30.0%
! TCTGAGACCAATCATATATT+TGG - chr8_1:41686681-41686700 None:intergenic 30.0%
TATGACTTAAGCGTCTATTT+GGG + chr8_1:41686829-41686848 Msa1194480:intron 30.0%
!! ATTTTGTTGCTTGCGTAATT+TGG + chr8_1:41686985-41687004 Msa1194480:intron 30.0%
GAAAGATGGATGACAAAAAT+TGG - chr8_1:41687190-41687209 None:intergenic 30.0%
GGAGTGGAATTAAAAGTTAA+AGG - chr8_1:41687282-41687301 None:intergenic 30.0%
! TTCTTCCTTGATGATATAAC+TGG + chr8_1:41687319-41687338 Msa1194480:CDS 30.0%
CAAATCCAGTTATATCATCA+AGG - chr8_1:41687327-41687346 None:intergenic 30.0%
! TGACAGTAGTTGCATTTTTA+AGG + chr8_1:41687446-41687465 Msa1194480:intron 30.0%
ACTGCTTCCATAGATTTAAA+AGG - chr8_1:41687497-41687516 None:intergenic 30.0%
ATCATCAAATGGTAATCCAT+TGG - chr8_1:41687596-41687615 None:intergenic 30.0%
!! AATGGATTACCATTTGATGA+TGG + chr8_1:41687595-41687614 Msa1194480:intron 30.0%
AAAATGAAACTAAAAGGCTC+GGG - chr8_1:41687784-41687803 None:intergenic 30.0%
GAAAATGAAACTAAAAGGCT+CGG - chr8_1:41687785-41687804 None:intergenic 30.0%
!! TTTCATTTTCACTTGGTTTG+CGG + chr8_1:41687795-41687814 Msa1194480:CDS 30.0%
TAGAGCTAGATATACAATGA+GGG - chr8_1:41687827-41687846 None:intergenic 30.0%
ATAGAGCTAGATATACAATG+AGG - chr8_1:41687828-41687847 None:intergenic 30.0%
ACTATACTGTCAATTTCAAG+TGG + chr8_1:41688007-41688026 Msa1194480:CDS 30.0%
ATTTGGGTATGAAAGTGAAG+AGG - chr8_1:41684071-41684090 None:intergenic 35.0%
!! AATCTAGCGTTGATATCCAA+CGG + chr8_1:41684151-41684170 Msa1194480:five_prime_UTR 35.0%
AAATGAGGTGAGACAGTAAA+TGG + chr8_1:41684355-41684374 Msa1194480:five_prime_UTR 35.0%
AATGAGGTGAGACAGTAAAT+GGG + chr8_1:41684356-41684375 Msa1194480:five_prime_UTR 35.0%
!!! CCAGTTTTTTTATTCCTAGC+CGG + chr8_1:41684420-41684439 Msa1194480:five_prime_UTR 35.0%
!! GGCTTATTTTCAAAGACAGT+TGG - chr8_1:41684449-41684468 None:intergenic 35.0%
TGTTAAAGTGAAGGCTACTT+TGG - chr8_1:41684617-41684636 None:intergenic 35.0%
AATGGAATAAAGGGAGTTTG+GGG - chr8_1:41684661-41684680 None:intergenic 35.0%
GAATGGAATAAAGGGAGTTT+GGG - chr8_1:41684662-41684681 None:intergenic 35.0%
AGAATGGAATAAAGGGAGTT+TGG - chr8_1:41684663-41684682 None:intergenic 35.0%
CCTAATTTAACCAAGGTCTT+GGG - chr8_1:41684904-41684923 None:intergenic 35.0%
TCCTAATTTAACCAAGGTCT+TGG - chr8_1:41684905-41684924 None:intergenic 35.0%
GTTCTCTCCTAATTTAACCA+AGG - chr8_1:41684911-41684930 None:intergenic 35.0%
! ATTTTTCTTTCAGGGAATGC+TGG + chr8_1:41685018-41685037 Msa1194480:intron 35.0%
AAAAAGGAGAAGAAATCCGT+TGG + chr8_1:41685102-41685121 Msa1194480:CDS 35.0%
! AGTTTGGTGGGATATATACT+TGG - chr8_1:41685158-41685177 None:intergenic 35.0%
AAGCACTTATGAGACTGTTT+GGG - chr8_1:41685316-41685335 None:intergenic 35.0%
TAAGCACTTATGAGACTGTT+TGG - chr8_1:41685317-41685336 None:intergenic 35.0%
GTTGTGTTGAACAGTATCAA+CGG - chr8_1:41685343-41685362 None:intergenic 35.0%
! CAACACAACTTTTGGATATC+TGG + chr8_1:41685354-41685373 Msa1194480:intron 35.0%
GTCATTCTATTATGAGGGAA+AGG + chr8_1:41685415-41685434 Msa1194480:intron 35.0%
TACTCTTTGTCGCTCAAAAT+TGG - chr8_1:41685675-41685694 None:intergenic 35.0%
! GTTTTGTATCTTCCTCTTTC+TGG + chr8_1:41685956-41685975 Msa1194480:intron 35.0%
CAGTAAATTATGCCAGAAAG+AGG - chr8_1:41685971-41685990 None:intergenic 35.0%
GGCATAATTTACTGAACTCA+TGG + chr8_1:41685977-41685996 Msa1194480:intron 35.0%
! CACTTACCTTTTTACTTCGA+AGG - chr8_1:41686055-41686074 None:intergenic 35.0%
GTAGTGACAAGAAATATAGG+AGG + chr8_1:41686288-41686307 Msa1194480:intron 35.0%
!! AGGATTTTACCCTGTCATTT+GGG + chr8_1:41686361-41686380 Msa1194480:intron 35.0%
TAAAACGTATGTAGGGAAAC+AGG - chr8_1:41686552-41686571 None:intergenic 35.0%
GACATCAAATGGTGAATCAA+AGG - chr8_1:41686613-41686632 None:intergenic 35.0%
CTATGACTTAAGCGTCTATT+TGG + chr8_1:41686828-41686847 Msa1194480:intron 35.0%
! TCTATTTGGGAAGGTGATTT+TGG + chr8_1:41686842-41686861 Msa1194480:intron 35.0%
ATGTAGAATATGACATCAGG+TGG - chr8_1:41687133-41687152 None:intergenic 35.0%
AGCATGTAGAATATGACATC+AGG - chr8_1:41687136-41687155 None:intergenic 35.0%
AGAAGAATCTAACAGATCAC+AGG - chr8_1:41687303-41687322 None:intergenic 35.0%
! TGAGATCACTTATTTGCTAG+AGG + chr8_1:41687345-41687364 Msa1194480:CDS 35.0%
TGTCAGATGCTATGACATTA+TGG - chr8_1:41687431-41687450 None:intergenic 35.0%
ATGAAAAAAATATCCCCTGC+AGG + chr8_1:41687548-41687567 Msa1194480:intron 35.0%
TGAAAAAAATATCCCCTGCA+GGG + chr8_1:41687549-41687568 Msa1194480:intron 35.0%
ATTAGAGAGCAAAATGCCAA+TGG + chr8_1:41687577-41687596 Msa1194480:intron 35.0%
! GGATGAGTTTTGCAAATCTA+TGG - chr8_1:41687686-41687705 None:intergenic 35.0%
AGAGCTAGATATACAATGAG+GGG - chr8_1:41687826-41687845 None:intergenic 35.0%
!! ATCTAGCTCTATCACTAACA+AGG + chr8_1:41687836-41687855 Msa1194480:CDS 35.0%
!! TCTAGCTCTATCACTAACAA+GGG + chr8_1:41687837-41687856 Msa1194480:CDS 35.0%
ACTGAAAATACCTCCTTCTT+TGG + chr8_1:41687983-41688002 Msa1194480:CDS 35.0%
CTGAAAATACCTCCTTCTTT+GGG + chr8_1:41687984-41688003 Msa1194480:CDS 35.0%
! ATACTGTCAATTTCAAGTGG+TGG + chr8_1:41688010-41688029 Msa1194480:CDS 35.0%
! AGAGCATTTGACTTTGTTGT+TGG - chr8_1:41688038-41688057 None:intergenic 35.0%
CTAATACACATACGAACCAG+TGG + chr8_1:41683807-41683826 Msa1194480:five_prime_UTR 40.0%
!! GGTTGATTTTTACTTGCCAC+TGG - chr8_1:41683826-41683845 None:intergenic 40.0%
!!! TTTTTTTGACTGGTTTGCGG+CGG + chr8_1:41683896-41683915 Msa1194480:five_prime_UTR 40.0%
GTATGAAAGTGAAGAGGAAG+AGG - chr8_1:41684065-41684084 None:intergenic 40.0%
CTGCATCGGAAACTGAATTT+GGG - chr8_1:41684087-41684106 None:intergenic 40.0%
TCTGCATCGGAAACTGAATT+TGG - chr8_1:41684088-41684107 None:intergenic 40.0%
AAAACCAAATCGAATCCTGC+CGG - chr8_1:41684121-41684140 None:intergenic 40.0%
TTGATATCCAACGGTTGTTG+AGG + chr8_1:41684160-41684179 Msa1194480:five_prime_UTR 40.0%
TTCCAGATCGAGATCGAATT+CGG + chr8_1:41684216-41684235 Msa1194480:five_prime_UTR 40.0%
ATTAGGGTTAGGATTGGGAT+TGG + chr8_1:41684246-41684265 Msa1194480:five_prime_UTR 40.0%
TTAGGGTTAGGATTGGGATT+GGG + chr8_1:41684247-41684266 Msa1194480:five_prime_UTR 40.0%
! ATGGTTGAGGAAGAAGGTAT+AGG + chr8_1:41684271-41684290 Msa1194480:five_prime_UTR 40.0%
TCATCCTCTTACTACAGTTC+TGG + chr8_1:41684324-41684343 Msa1194480:five_prime_UTR 40.0%
CTTTCCAGAACTGTAGTAAG+AGG - chr8_1:41684331-41684350 None:intergenic 40.0%
ATGAGGTGAGACAGTAAATG+GGG + chr8_1:41684357-41684376 Msa1194480:five_prime_UTR 40.0%
CCGGCTAGGAATAAAAAAAC+TGG - chr8_1:41684423-41684442 None:intergenic 40.0%
TTTCAAAGACAGTTGGCAAC+CGG - chr8_1:41684442-41684461 None:intergenic 40.0%
AGAGTAGTTGCTTGGAGATA+AGG - chr8_1:41684501-41684520 None:intergenic 40.0%
! TACTTTGGTAGCAGTGAACA+TGG - chr8_1:41684602-41684621 None:intergenic 40.0%
TTTAACCAAGGTCTTGGGTT+CGG - chr8_1:41684899-41684918 None:intergenic 40.0%
CCCAAGACCTTGGTTAAATT+AGG + chr8_1:41684901-41684920 Msa1194480:intron 40.0%
GATCTATGCTACAATATGGG+AGG - chr8_1:41685080-41685099 None:intergenic 40.0%
TTCTTGCTCAAGTTCACCAA+CGG - chr8_1:41685121-41685140 None:intergenic 40.0%
ATCTCAAGGAGGAACTTATG+TGG + chr8_1:41685465-41685484 Msa1194480:CDS 40.0%
TCTCAAGGAGGAACTTATGT+GGG + chr8_1:41685466-41685485 Msa1194480:CDS 40.0%
CAGTGTTGTCATGCTAAGTA+TGG + chr8_1:41685496-41685515 Msa1194480:intron 40.0%
GCTTCTATGGCTTATGTATC+TGG + chr8_1:41685645-41685664 Msa1194480:CDS 40.0%
TGAAGTCATCATTGTGTCAC+TGG + chr8_1:41685777-41685796 Msa1194480:intron 40.0%
!! ATGGTTGTTTTCCAGAGAGA+AGG + chr8_1:41685996-41686015 Msa1194480:intron 40.0%
!! TGGTTGTTTTCCAGAGAGAA+GGG + chr8_1:41685997-41686016 Msa1194480:intron 40.0%
! AGGGAGTGAAATTGTTGTTG+AGG + chr8_1:41686016-41686035 Msa1194480:CDS 40.0%
! GGGAGTGAAATTGTTGTTGA+GGG + chr8_1:41686017-41686036 Msa1194480:CDS 40.0%
! AAATTGTTGTTGAGGGTCCA+AGG + chr8_1:41686024-41686043 Msa1194480:CDS 40.0%
ATGACAGGGTAAAATCCTGA+AGG - chr8_1:41686359-41686378 None:intergenic 40.0%
! CAGGATTTTACCCTGTCATT+TGG + chr8_1:41686360-41686379 Msa1194480:intron 40.0%
GGTTGCATTAGGATTGTAAG+TGG + chr8_1:41686520-41686539 Msa1194480:intron 40.0%
ACTTAAGCGTCTATTTGGGA+AGG + chr8_1:41686833-41686852 Msa1194480:intron 40.0%
! ATTTGGGAAGGTGATTTTGG+AGG + chr8_1:41686845-41686864 Msa1194480:intron 40.0%
! TTTGGGAAGGTGATTTTGGA+GGG + chr8_1:41686846-41686865 Msa1194480:intron 40.0%
!! AAGGTGATTTTGGAGGGTTT+TGG + chr8_1:41686852-41686871 Msa1194480:intron 40.0%
!!! TGATTTTGGAGGGTTTTGGA+GGG + chr8_1:41686856-41686875 Msa1194480:intron 40.0%
TCCTTTCTATCCCTTCCTTA+GGG - chr8_1:41687061-41687080 None:intergenic 40.0%
TTCCTTTCTATCCCTTCCTT+AGG - chr8_1:41687062-41687081 None:intergenic 40.0%
AATCTAACAGATCACAGGAG+TGG - chr8_1:41687298-41687317 None:intergenic 40.0%
TGGAAGCAGTTTATCACCAT+TGG + chr8_1:41687507-41687526 Msa1194480:intron 40.0%
TCTCTAATGTTTACCCTGCA+GGG - chr8_1:41687565-41687584 None:intergenic 40.0%
! GTATTTTCAGTTCCGCAGTT+TGG - chr8_1:41687974-41687993 None:intergenic 40.0%
TGACAGTATAGTCCCAAAGA+AGG - chr8_1:41687999-41688018 None:intergenic 40.0%
GTCGCAATCATCTTCTGCAT+CGG + chr8_1:41683954-41683973 Msa1194480:five_prime_UTR 45.0%
TCATCTTCTGCATCGGATAC+AGG + chr8_1:41683961-41683980 Msa1194480:five_prime_UTR 45.0%
TGAAGAGGAAGAGGATGAAG+AGG - chr8_1:41684056-41684075 None:intergenic 45.0%
ATCCAACGGTTGTTGAGGTT+TGG + chr8_1:41684165-41684184 Msa1194480:five_prime_UTR 45.0%
ATCCAAACCTCAACAACCGT+TGG - chr8_1:41684170-41684189 None:intergenic 45.0%
TCCAGATCGAGATCGAATTC+GGG + chr8_1:41684217-41684236 Msa1194480:five_prime_UTR 45.0%
ATCGAGATCGAATTCGGGAT+CGG + chr8_1:41684222-41684241 Msa1194480:five_prime_UTR 45.0%
ATCGGGATTAGGGTTAGGAT+TGG + chr8_1:41684240-41684259 Msa1194480:five_prime_UTR 45.0%
TCGGGATTAGGGTTAGGATT+GGG + chr8_1:41684241-41684260 Msa1194480:five_prime_UTR 45.0%
GTTAGGATTGGGATTGGGAA+TGG + chr8_1:41684252-41684271 Msa1194480:five_prime_UTR 45.0%
ATTGGGATTGGGAATGGTTG+AGG + chr8_1:41684258-41684277 Msa1194480:five_prime_UTR 45.0%
TTGGGAATGGTTGAGGAAGA+AGG + chr8_1:41684265-41684284 Msa1194480:five_prime_UTR 45.0%
GGTATAGGCGTTCTTTCTTC+TGG + chr8_1:41684286-41684305 Msa1194480:five_prime_UTR 45.0%
TGTAGTAAGAGGATGAGTCG+AGG - chr8_1:41684320-41684339 None:intergenic 45.0%
TGAGGTGAGACAGTAAATGG+GGG + chr8_1:41684358-41684377 Msa1194480:five_prime_UTR 45.0%
GATAAGGCAATGAGAACGTG+TGG - chr8_1:41684485-41684504 None:intergenic 45.0%
GTAGCAGTGAACATGGTGAA+TGG - chr8_1:41684595-41684614 None:intergenic 45.0%
GCGAAAGTAGGAGTAATCTG+CGG - chr8_1:41684738-41684757 None:intergenic 45.0%
TGTTGATCTGCAGTGGCTTT+AGG - chr8_1:41684760-41684779 None:intergenic 45.0%
AAAGCCACTGCAGATCAACA+AGG + chr8_1:41684760-41684779 Msa1194480:CDS 45.0%
GATACCTTGTTGATCTGCAG+TGG - chr8_1:41684767-41684786 None:intergenic 45.0%
GTTGGACGACTCAAAATGAG+TGG + chr8_1:41684850-41684869 Msa1194480:intron 45.0%
! GGGAATGCTGGAGATTTTGA+CGG + chr8_1:41685030-41685049 Msa1194480:intron 45.0%
AAGGAGGAACTTATGTGGGA+AGG + chr8_1:41685470-41685489 Msa1194480:CDS 45.0%
CAATTTCACTCCCTTCTCTC+TGG - chr8_1:41686010-41686029 None:intergenic 45.0%
GTGCAGCCTTCGAAGTAAAA+AGG + chr8_1:41686046-41686065 Msa1194480:CDS 45.0%
CTCGTCAATCCCAAATGACA+GGG - chr8_1:41686373-41686392 None:intergenic 45.0%
ACTCGTCAATCCCAAATGAC+AGG - chr8_1:41686374-41686393 None:intergenic 45.0%
CAATCCTAATGCAACCACAG+TGG - chr8_1:41686516-41686535 None:intergenic 45.0%
!! GTGATTTTGGAGGGTTTTGG+AGG + chr8_1:41686855-41686874 Msa1194480:intron 45.0%
TCCTTAGGGTATGTTTGGGA+GGG - chr8_1:41687047-41687066 None:intergenic 45.0%
TTCCTTAGGGTATGTTTGGG+AGG - chr8_1:41687048-41687067 None:intergenic 45.0%
TCCCAAACATACCCTAAGGA+AGG + chr8_1:41687047-41687066 Msa1194480:intron 45.0%
CCCTTCCTTAGGGTATGTTT+GGG - chr8_1:41687051-41687070 None:intergenic 45.0%
CCCAAACATACCCTAAGGAA+GGG + chr8_1:41687048-41687067 Msa1194480:intron 45.0%
TCCCTTCCTTAGGGTATGTT+TGG - chr8_1:41687052-41687071 None:intergenic 45.0%
ACCCTAAGGAAGGGATAGAA+AGG + chr8_1:41687057-41687076 Msa1194480:intron 45.0%
CTCTAATGTTTACCCTGCAG+GGG - chr8_1:41687564-41687583 None:intergenic 45.0%
CTCTCTAATGTTTACCCTGC+AGG - chr8_1:41687566-41687585 None:intergenic 45.0%
CAGTATAGTCCCAAAGAAGG+AGG - chr8_1:41687996-41688015 None:intergenic 45.0%
!!! TGATTATTTAAATTTTAAAA+GGG + chr8_1:41687941-41687960 Msa1194480:intron 5.0%
TGATCTTCGTCGGATACAGG+CGG + chr8_1:41683919-41683938 Msa1194480:five_prime_UTR 50.0%
TCTTCTGCATCGGATACAGG+CGG + chr8_1:41683964-41683983 Msa1194480:five_prime_UTR 50.0%
AGTTTCCGATGCAGAGACAG+TGG + chr8_1:41684093-41684112 Msa1194480:five_prime_UTR 50.0%
TCCCGAATTCGATCTCGATC+TGG - chr8_1:41684221-41684240 None:intergenic 50.0%
TCGAGATCGAATTCGGGATC+GGG + chr8_1:41684223-41684242 Msa1194480:five_prime_UTR 50.0%
TCGAATTCGGGATCGGGATT+AGG + chr8_1:41684229-41684248 Msa1194480:five_prime_UTR 50.0%
CGAATTCGGGATCGGGATTA+GGG + chr8_1:41684230-41684249 Msa1194480:five_prime_UTR 50.0%
GAGGTGAGACAGTAAATGGG+GGG + chr8_1:41684359-41684378 Msa1194480:five_prime_UTR 50.0%
! CAGTAAATGGGGGGTGTAAC+TGG + chr8_1:41684368-41684387 Msa1194480:five_prime_UTR 50.0%
ACGTGTGGAGGGAAATGCAA+CGG - chr8_1:41684470-41684489 None:intergenic 50.0%
AGGCAATGAGAACGTGTGGA+GGG - chr8_1:41684481-41684500 None:intergenic 50.0%
AAGGCAATGAGAACGTGTGG+AGG - chr8_1:41684482-41684501 None:intergenic 50.0%
GCAGTGAACATGGTGAATGG+TGG - chr8_1:41684592-41684611 None:intergenic 50.0%
!! AGGAGGGGGTGTTAAAGTGA+AGG - chr8_1:41684626-41684645 None:intergenic 50.0%
!! CAGTGGCTTTAGGCGAAAGT+AGG - chr8_1:41684750-41684769 None:intergenic 50.0%
TTACTTCGAAGGCTGCACCT+TGG - chr8_1:41686044-41686063 None:intergenic 50.0%
CTAATGCAACCACAGTGGCT+GGG - chr8_1:41686511-41686530 None:intergenic 50.0%
! TATGTTTGGGAGGGGGGTTT+TGG - chr8_1:41687038-41687057 None:intergenic 50.0%
TTAGGGTATGTTTGGGAGGG+GGG - chr8_1:41687044-41687063 None:intergenic 50.0%
CTTAGGGTATGTTTGGGAGG+GGG - chr8_1:41687045-41687064 None:intergenic 50.0%
CCTTAGGGTATGTTTGGGAG+GGG - chr8_1:41687046-41687065 None:intergenic 50.0%
TCAGTTCCGCAGTTTGGACA+GGG - chr8_1:41687968-41687987 None:intergenic 50.0%
TTCAGTTCCGCAGTTTGGAC+AGG - chr8_1:41687969-41687988 None:intergenic 50.0%
TTTGCGGCGGTGATCTTCGT+CGG + chr8_1:41683909-41683928 Msa1194480:five_prime_UTR 55.0%
CGGTGATCTTCGTCGGATAC+AGG + chr8_1:41683916-41683935 Msa1194480:five_prime_UTR 55.0%
TCGGGATCGGGATTAGGGTT+AGG + chr8_1:41684235-41684254 Msa1194480:five_prime_UTR 55.0%
AAGACAGTTGGCAACCGGCT+AGG - chr8_1:41684437-41684456 None:intergenic 55.0%
! GTTTGGGGTGCAGAACATGG+AGG - chr8_1:41684646-41684665 None:intergenic 55.0%
! GGAGTTTGGGGTGCAGAACA+TGG - chr8_1:41684649-41684668 None:intergenic 55.0%
GTAGGAGTAATCTGCGGCGA+AGG - chr8_1:41684732-41684751 None:intergenic 55.0%
CAAGTCCGAACCCAAGACCT+TGG + chr8_1:41684891-41684910 Msa1194480:intron 55.0%
CCTAATGCAACCACAGTGGC+TGG - chr8_1:41686512-41686531 None:intergenic 55.0%
CCAGCCACTGTGGTTGCATT+AGG + chr8_1:41686509-41686528 Msa1194480:CDS 55.0%
!!! TTTGGGAGGGGGGTTTTGGA+GGG - chr8_1:41687034-41687053 None:intergenic 55.0%
CCCCTCCCAAACATACCCTA+AGG + chr8_1:41687043-41687062 Msa1194480:intron 55.0%
AAGGGTCCCTGTCCAAACTG+CGG + chr8_1:41687959-41687978 Msa1194480:intron 55.0%
GCATCGGATACAGGCGGCAA+CGG + chr8_1:41683970-41683989 Msa1194480:five_prime_UTR 60.0%
GGTGCAGAACATGGAGGAGG+GGG - chr8_1:41684640-41684659 None:intergenic 60.0%
GGGTGCAGAACATGGAGGAG+GGG - chr8_1:41684641-41684660 None:intergenic 60.0%
GGGGTGCAGAACATGGAGGA+GGG - chr8_1:41684642-41684661 None:intergenic 60.0%
TGGGGTGCAGAACATGGAGG+AGG - chr8_1:41684643-41684662 None:intergenic 60.0%
! ACGTGGCGGGAGTTGAAGTG+AGG - chr8_1:41684706-41684725 None:intergenic 60.0%
! ATCTGCGGCGAAGGCATACG+TGG - chr8_1:41684723-41684742 None:intergenic 60.0%
!!! AGGGGGGTTTTGGAGGGAAG+GGG - chr8_1:41687028-41687047 None:intergenic 60.0%
!!! GAGGGGGGTTTTGGAGGGAA+GGG - chr8_1:41687029-41687048 None:intergenic 60.0%
!! GTTTGGGAGGGGGGTTTTGG+AGG - chr8_1:41687035-41687054 None:intergenic 60.0%
TCGTCGGATACAGGCGGCGA+CGG + chr8_1:41683925-41683944 Msa1194480:five_prime_UTR 65.0%
TCGGATACAGGCGGCAACGG+AGG + chr8_1:41683973-41683992 Msa1194480:five_prime_UTR 65.0%
ACAGGCGGCAACGGAGGAGA+AGG + chr8_1:41683979-41683998 Msa1194480:five_prime_UTR 65.0%
CGGCGCCACTGTCTCTGCAT+CGG - chr8_1:41684101-41684120 None:intergenic 65.0%
CGATGCAGAGACAGTGGCGC+CGG + chr8_1:41684099-41684118 Msa1194480:five_prime_UTR 65.0%
!! GGCGCCGGCAGGATTCGATT+TGG + chr8_1:41684114-41684133 Msa1194480:five_prime_UTR 65.0%
! TGCGGCGAAGGCATACGTGG+CGG - chr8_1:41684720-41684739 None:intergenic 65.0%
CAGTGGCTGGGACGTTCAGC+AGG - chr8_1:41686499-41686518 None:intergenic 65.0%
GCTGAACGTCCCAGCCACTG+TGG + chr8_1:41686499-41686518 Msa1194480:CDS 65.0%
!!! GGGGTTTTGGAGGGAAGGGG+AGG - chr8_1:41687025-41687044 None:intergenic 65.0%
!!! GGAGGGGGGTTTTGGAGGGA+AGG - chr8_1:41687030-41687049 None:intergenic 65.0%
TCGGATACAGGCGGCGACGG+AGG + chr8_1:41683928-41683947 Msa1194480:five_prime_UTR 70.0%
CGGATACAGGCGGCGACGGA+GGG + chr8_1:41683929-41683948 Msa1194480:five_prime_UTR 70.0%
! GCGGCGAAGGCATACGTGGC+GGG - chr8_1:41684719-41684738 None:intergenic 70.0%
!! GCAGAGACAGTGGCGCCGGC+AGG + chr8_1:41684103-41684122 Msa1194480:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 41683787 41688063 41683787 ID=Msa1194480;Name=Msa1194480
chr8_1 mRNA 41683787 41688063 41683787 ID=Msa1194480-mRNA-1;Parent=Msa1194480;Name=Msa1194480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=814|1|0.88|1|1|1|9|0|301
chr8_1 exon 41683787 41684781 41683787 ID=Msa1194480-mRNA-1:exon:13475;Parent=Msa1194480-mRNA-1
chr8_1 exon 41685031 41685158 41685031 ID=Msa1194480-mRNA-1:exon:13476;Parent=Msa1194480-mRNA-1
chr8_1 exon 41685416 41685512 41685416 ID=Msa1194480-mRNA-1:exon:13477;Parent=Msa1194480-mRNA-1
chr8_1 exon 41685619 41685719 41685619 ID=Msa1194480-mRNA-1:exon:13478;Parent=Msa1194480-mRNA-1
chr8_1 exon 41686011 41686067 41686011 ID=Msa1194480-mRNA-1:exon:13479;Parent=Msa1194480-mRNA-1
chr8_1 exon 41686458 41686534 41686458 ID=Msa1194480-mRNA-1:exon:13480;Parent=Msa1194480-mRNA-1
chr8_1 exon 41687315 41687366 41687315 ID=Msa1194480-mRNA-1:exon:13481;Parent=Msa1194480-mRNA-1
chr8_1 exon 41687778 41687888 41687778 ID=Msa1194480-mRNA-1:exon:13482;Parent=Msa1194480-mRNA-1
chr8_1 exon 41687962 41688063 41687962 ID=Msa1194480-mRNA-1:exon:13483;Parent=Msa1194480-mRNA-1
chr8_1 five_prime_UTR 41683787 41684600 41683787 ID=Msa1194480-mRNA-1:five_prime_utr;Parent=Msa1194480-mRNA-1
chr8_1 CDS 41684601 41684781 41684601 ID=Msa1194480-mRNA-1:cds;Parent=Msa1194480-mRNA-1
chr8_1 CDS 41685031 41685158 41685031 ID=Msa1194480-mRNA-1:cds;Parent=Msa1194480-mRNA-1
chr8_1 CDS 41685416 41685512 41685416 ID=Msa1194480-mRNA-1:cds;Parent=Msa1194480-mRNA-1
chr8_1 CDS 41685619 41685719 41685619 ID=Msa1194480-mRNA-1:cds;Parent=Msa1194480-mRNA-1
chr8_1 CDS 41686011 41686067 41686011 ID=Msa1194480-mRNA-1:cds;Parent=Msa1194480-mRNA-1
chr8_1 CDS 41686458 41686534 41686458 ID=Msa1194480-mRNA-1:cds;Parent=Msa1194480-mRNA-1
chr8_1 CDS 41687315 41687366 41687315 ID=Msa1194480-mRNA-1:cds;Parent=Msa1194480-mRNA-1
chr8_1 CDS 41687778 41687888 41687778 ID=Msa1194480-mRNA-1:cds;Parent=Msa1194480-mRNA-1
chr8_1 CDS 41687962 41688063 41687962 ID=Msa1194480-mRNA-1:cds;Parent=Msa1194480-mRNA-1
Gene Sequence

>Msa1194480

ATGTTCACTGCTACCAAAGTAGCCTTCACTTTAACACCCCCTCCTCCATGTTCTGCACCCCAAACTCCCTTTATTCCATTCTCTTTTTCTTCTGTTTCTCGTCCTCACTTCAACTCCCGCCACGTATGCCTTCGCCGCAGATTACTCCTACTTTCGCCTAAAGCCACTGCAGATCAACAAGGGAATGCTGGAGATTTTGACGGAGATGCTGTTATTGATACTAATGTCCTCCCATATTGTAGCATAGATCAAAAAAAGGAGAAGAAATCCGTTGGTGAACTTGAGCAAGAATTTCTTCAAGCACTCCAATCATTCTATTATGAGGGAAAGGCTATTATGTCAAATGAAGAATTTGATAATCTCAAGGAGGAACTTATGTGGGAAGGAAGCAGTGTTGTCATGCTAAGTTCTGATGAACAAAAATTTCTTGAAGCTTCTATGGCTTATGTATCTGGAAATCCAATTTTGAGCGACAAAGAGTATGATAAGTTGAAACTGAATCTAAAGAGAGAAGGGAGTGAAATTGTTGTTGAGGGTCCAAGGTGCAGCCTTCGAAGTAAAAAGGTTTACAGTGACCTGTCTGTTGACTATTTAAAGATGTTCCTGCTGAACGTCCCAGCCACTGTGGTTGCATTAGGATTATTCTTCTTCCTTGATGATATAACTGGATTTGAGATCACTTATTTGCTAGAGCTGCCCGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCGGCTGTTCCCCTCATTGTATATCTAGCTCTATCACTAACAAGGGCCATTATCAAAGATTTTGTGATTTTAAAGGGTCCCTGTCCAAACTGCGGAACTGAAAATACCTCCTTCTTTGGGACTATACTGTCAATTTCAAGTGGTGGTTCCAACAACAAAGTCAAATGCTCTGAGTAA

Protein sequence

>Msa1194480

MFTATKVAFTLTPPPPCSAPQTPFIPFSFSSVSRPHFNSRHVCLRRRLLLLSPKATADQQGNAGDFDGDAVIDTNVLPYCSIDQKKEKKSVGELEQEFLQALQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGNPILSDKEYDKLKLNLKREGSEIVVEGPRCSLRSKKVYSDLSVDYLKMFLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLALSLTRAIIKDFVILKGPCPNCGTENTSFFGTILSISSGGSNNKVKCSE*