AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0395300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0395300 MtrunA17_Chr3g0080821 98.361 366 6 0 52 417 1 366 0.0 738
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0395300 AT3G54360.1 66.393 366 107 2 56 405 31 396 4.31e-174 493
Msa0395300 AT3G54360.2 66.393 366 107 2 56 405 31 396 4.31e-174 493

Find 108 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTCCTTTAGTACCTTAT+TGG 0.156109 3_2:-11777929 Msa0395300:three_prime_UTR
GGCATGTATATTGCGCTTTA+AGG 0.157277 3_2:-11781961 Msa0395300:CDS
TTCAACTTGTTCTTGTTTAT+CGG 0.174396 3_2:+11778222 None:intergenic
AACATCACGGCGAACATTTA+AGG 0.189458 3_2:+11779866 None:intergenic
TCCGTTTCACTTAATAAAAT+TGG 0.233446 3_2:-11779945 Msa0395300:CDS
TGGTGACTATAACTTGTATT+TGG 0.277482 3_2:-11777687 Msa0395300:three_prime_UTR
TATCTCCTACTAGAACTTTC+CGG 0.287981 3_2:-11777968 Msa0395300:three_prime_UTR
GTTCTTGTTTATCGGCCTTT+TGG 0.296831 3_2:+11778230 None:intergenic
TAGAAATACAGTGAATAAAA+AGG 0.304035 3_2:+11777989 None:intergenic
AAAGTTGCCTAAAGATGATT+TGG 0.309793 3_2:-11780097 Msa0395300:CDS
TTTGGAAAGAGGTTCTTTCT+TGG 0.311270 3_2:-11781769 Msa0395300:CDS
GATTGGTCCTCTTAGTTGTA+TGG 0.347050 3_2:-11782136 Msa0395300:CDS
TAGTACCTTATTGGTGCATA+AGG 0.347792 3_2:-11777920 Msa0395300:three_prime_UTR
TAGAGATTCCAGCAAGTCTA+TGG 0.352338 3_2:+11778774 None:intergenic
ACATAGGTTCAGTCTTGATT+TGG 0.359386 3_2:+11781240 None:intergenic
AGGTTCTTTCTTGGTGCAAC+AGG 0.360238 3_2:-11781760 Msa0395300:CDS
TCAAGAAGCCATAGACTTGC+TGG 0.365900 3_2:-11778782 Msa0395300:CDS
GTTTCCCTTATGCACCAATA+AGG 0.366503 3_2:+11777915 None:intergenic
TTTAAGGACTGTCCGTTATG+TGG 0.380399 3_2:-11781945 Msa0395300:CDS
CATATATGAGGATGTGTCTT+TGG 0.383770 3_2:-11781787 Msa0395300:CDS
TTCACAGCTTGGAGCAGTCT+TGG 0.391486 3_2:-11781164 Msa0395300:CDS
CAATTCAAATGTTTCATCTC+AGG 0.394732 3_2:-11779835 Msa0395300:intron
AGAACAAGGCACACATTTGC+TGG 0.397964 3_2:+11782089 None:intergenic
GGAGCAGTCTTGGGCATGCT+TGG 0.413175 3_2:-11781154 Msa0395300:CDS
CTAGTCAAAATGAGGTTTGA+AGG 0.421949 3_2:-11777610 Msa0395300:three_prime_UTR
GGTGATCTTAAATATTATGA+TGG 0.426058 3_2:-11779924 Msa0395300:CDS
TTAAGGACTGTCCGTTATGT+GGG 0.440149 3_2:-11781944 Msa0395300:CDS
GAGCCCGATGCTGATCTTCA+AGG 0.446498 3_2:-11781903 Msa0395300:CDS
TAAATGTTTCTGTATGCGAT+TGG 0.452938 3_2:-11778136 Msa0395300:three_prime_UTR
AGTACCTTATTGGTGCATAA+GGG 0.456587 3_2:-11777919 Msa0395300:three_prime_UTR
CCTTACTTTCATGCTCTACA+TGG 0.457016 3_2:+11782232 None:intergenic
TTAGAAACATTACTGTCATC+CGG 0.458910 3_2:+11782282 None:intergenic
TCACAGCTTGGAGCAGTCTT+GGG 0.459444 3_2:-11781163 Msa0395300:CDS
ATAACCTCCAAATCATCTTT+AGG 0.460092 3_2:+11780090 None:intergenic
TGGGCATGCTTGGTGACTGC+TGG 0.461090 3_2:-11781144 Msa0395300:intron
CCATGTAGAGCATGAAAGTA+AGG 0.465700 3_2:-11782232 Msa0395300:CDS
TGAAAGTAAGGTTAAGAAAG+AGG 0.469593 3_2:-11782220 Msa0395300:CDS
GTAGTTGATCGCTTTATTGA+AGG 0.475161 3_2:-11781879 Msa0395300:CDS
AACATTACTGTCATCCGGCC+GGG 0.476862 3_2:+11782287 None:intergenic
TACTAGAACTTTCCGGTGAC+CGG 0.478429 3_2:-11777961 Msa0395300:three_prime_UTR
GTGATCTTAAATATTATGAT+GGG 0.479498 3_2:-11779923 Msa0395300:CDS
AGTACGACCTTGCAGCTTGA+AGG 0.480052 3_2:+11779898 None:intergenic
GTCTCACCGAAGTGTCCGTT+GGG 0.480992 3_2:-11782180 Msa0395300:CDS
AGCCAGTGGACTTGAGCAAC+GGG 0.481590 3_2:-11778737 Msa0395300:intron
TCTTGCAAAAGTAGCGGATG+TGG 0.484863 3_2:-11778845 Msa0395300:CDS
GAGGATGTGTCTTTGGAAAG+AGG 0.487421 3_2:-11781780 Msa0395300:CDS
TCAGAGTTATGTTCACAGCT+TGG 0.488740 3_2:-11781175 Msa0395300:CDS
TATCATTTCTAGTCAAAATG+AGG 0.493785 3_2:-11777618 Msa0395300:three_prime_UTR
TACCCGTTGCTCAAGTCCAC+TGG 0.497823 3_2:+11778735 None:intergenic
AAGGTCATGCCAGGATCAAA+AGG 0.498126 3_2:-11781860 Msa0395300:CDS
GAACAAAGGCATTATAATAG+AGG 0.499392 3_2:-11778087 Msa0395300:three_prime_UTR
CAAGTTGAACAAACAATATG+AGG 0.503148 3_2:-11778208 Msa0395300:exon
TCTTAGTTGTATGGTATGCC+AGG 0.506853 3_2:-11782127 Msa0395300:CDS
GTTGCCTAAAGATGATTTGG+AGG 0.510008 3_2:-11780094 Msa0395300:intron
TAATAAGCCTGTCATATATG+AGG 0.511134 3_2:-11781799 Msa0395300:CDS
TATAGAATATTCATAAATGT+TGG 0.513127 3_2:-11777771 Msa0395300:three_prime_UTR
ATGCACCAATAAGGTACTAA+AGG 0.513642 3_2:+11777924 None:intergenic
GCGGATGTGGACAAAAGTCT+AGG 0.516734 3_2:-11778832 Msa0395300:CDS
TGTGTGATGATGCGGTTGGT+TGG 0.518754 3_2:+11783180 None:intergenic
AGACTTCCTTAGAAGCCAAA+AGG 0.521354 3_2:-11778245 Msa0395300:CDS
TTGTGATCCTCTCCGGTCAC+CGG 0.522149 3_2:+11777949 None:intergenic
CACTTTCTAAATTCTGAGCA+CGG 0.525130 3_2:+11781263 None:intergenic
CGGATGTGGACAAAAGTCTA+GGG 0.527420 3_2:-11778831 Msa0395300:CDS
ATTCAGAGTGATGGATATCT+CGG 0.530218 3_2:-11778048 Msa0395300:three_prime_UTR
AAAGGAGTTGTGATCCTCTC+CGG 0.537504 3_2:+11777942 None:intergenic
TGTCTCACCGAAGTGTCCGT+TGG 0.544563 3_2:-11782181 Msa0395300:CDS
ATACACGCCTTGCTAGCAAA+AGG 0.544777 3_2:-11778181 Msa0395300:three_prime_UTR
ACACCTTGAAGATCAGCATC+GGG 0.547362 3_2:+11781900 None:intergenic
AACTGCTATCACCCATTGCT+CGG 0.561570 3_2:+11780160 None:intergenic
GATGAAAAGTCCGCTAGTGA+TGG 0.561875 3_2:-11778808 Msa0395300:CDS
AAACATTACTGTCATCCGGC+CGG 0.565772 3_2:+11782286 None:intergenic
TCATGTGTAAAATAAAGCTC+AGG 0.568004 3_2:-11778111 Msa0395300:three_prime_UTR
TGGCATACCATACAACTAAG+AGG 0.568439 3_2:+11782129 None:intergenic
GGATTGTGTGATGATGCGGT+TGG 0.572386 3_2:+11783176 None:intergenic
GAAGTAACATGGATGTATGT+CGG 0.572891 3_2:-11777835 Msa0395300:three_prime_UTR
ACATTACTGTCATCCGGCCG+GGG 0.574631 3_2:+11782288 None:intergenic
GGTCACCGGAAAGTTCTAGT+AGG 0.577461 3_2:+11777963 None:intergenic
GACACATCCTCATATATGAC+AGG 0.577817 3_2:+11781792 None:intergenic
AGGTCTGTTAATTTAGACAA+TGG 0.578810 3_2:-11781840 Msa0395300:CDS
TACACCTTGAAGATCAGCAT+CGG 0.579839 3_2:+11781899 None:intergenic
CTTGGTGCAACAGGCCATGA+GGG 0.579935 3_2:-11781751 Msa0395300:intron
CGTTTCTCTTGCAAAAGTAG+CGG 0.580560 3_2:-11778851 Msa0395300:CDS
TCATATCCCAACGGACACTT+CGG 0.581365 3_2:+11782174 None:intergenic
GCTTTATTGAAGGTCATGCC+AGG 0.582251 3_2:-11781869 Msa0395300:CDS
TTGTGGATTGTGTGATGATG+CGG 0.585635 3_2:+11783172 None:intergenic
AAGCCAGTGGACTTGAGCAA+CGG 0.586144 3_2:-11778738 Msa0395300:CDS
TCAATATCAGCCCCACATAA+CGG 0.586338 3_2:+11781933 None:intergenic
TAAGGACTGTCCGTTATGTG+GGG 0.607937 3_2:-11781943 Msa0395300:CDS
GATGAATTCTGAGGAAATTG+TGG 0.609327 3_2:+11783155 None:intergenic
TGGTGTCGAATAGAAGTGCC+TGG 0.612439 3_2:+11782109 None:intergenic
ATGGGGACCTTCAAGCTGCA+AGG 0.614405 3_2:-11779905 Msa0395300:CDS
TCTTGGTGCAACAGGCCATG+AGG 0.620045 3_2:-11781752 Msa0395300:CDS
AATAAAGCTCAGGTGAACAA+AGG 0.621839 3_2:-11778101 Msa0395300:three_prime_UTR
ATATTAGTTACATTAATGCA+AGG 0.625674 3_2:+11777880 None:intergenic
AATTGTTCTTGACAACATCA+CGG 0.633322 3_2:+11779853 None:intergenic
TTGCAGAAAACATGAGAACA+AGG 0.633881 3_2:+11782075 None:intergenic
AAAGACACTTGCAACAACGT+TGG 0.636189 3_2:-11783112 Msa0395300:CDS
AGACAATGGCGAAGAAGCAG+CGG 0.639990 3_2:-11781826 Msa0395300:CDS
ACACTAGAAATGAAGTAACA+TGG 0.640620 3_2:-11777846 Msa0395300:three_prime_UTR
TGATCTTAAATATTATGATG+GGG 0.641979 3_2:-11779922 Msa0395300:CDS
GTCTGTGAGTCATATCCCAA+CGG 0.646935 3_2:+11782165 None:intergenic
TTCTTGAAATCCATCACTAG+CGG 0.650386 3_2:+11778798 None:intergenic
TTGAAAAGGACATACCCTCA+TGG 0.661737 3_2:+11781737 None:intergenic
TGCGAACGTCTTCTGCACAT+AGG 0.663682 3_2:+11781224 None:intergenic
GAACTTTCCGGTGACCGGAG+AGG 0.682585 3_2:-11777956 Msa0395300:three_prime_UTR
GGATGTGGACAAAAGTCTAG+GGG 0.700647 3_2:-11778830 Msa0395300:CDS
GAATTGTGCGATGAATTCTG+AGG 0.725423 3_2:+11783146 None:intergenic
ACATTGAAATCTGAAGCCAG+TGG 0.727372 3_2:-11778751 Msa0395300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAGATATAGATAAAAA+TGG + chr3_2:11780198-11780217 None:intergenic 10.0%
!!! AAGCAATTTTTATTTTTAAA+CGG + chr3_2:11781516-11781535 None:intergenic 10.0%
!!! TATAATTCATTTTGTAAAAT+TGG - chr3_2:11783062-11783081 Msa0395300:intron 10.0%
!!! TTGAATCTTGATATTATTTT+CGG - chr3_2:11777757-11777776 Msa0395300:three_prime_UTR 15.0%
!!! TTTTATCATTTTAATTTGTG+TGG - chr3_2:11778003-11778022 Msa0395300:three_prime_UTR 15.0%
!! ACATATAATTCAAATATAAG+TGG + chr3_2:11780979-11780998 None:intergenic 15.0%
!! TTTGAATTATATGTAATCTT+AGG - chr3_2:11780985-11781004 Msa0395300:intron 15.0%
!! TTGAATTATATGTAATCTTA+GGG - chr3_2:11780986-11781005 Msa0395300:intron 15.0%
!!! AAATGTTTTTATCATTTTCA+TGG + chr3_2:11781612-11781631 None:intergenic 15.0%
!! TTGATATAAACAATGAAAAA+AGG + chr3_2:11781884-11781903 None:intergenic 15.0%
!! TTCATTGTTTATATCAATTT+AGG - chr3_2:11781887-11781906 Msa0395300:CDS 15.0%
!! AAGACATTATATACTAAAAA+TGG + chr3_2:11782412-11782431 None:intergenic 15.0%
!! TATAGAATATTCATAAATGT+TGG - chr3_2:11783003-11783022 Msa0395300:intron 15.0%
!! TTATGATGTTGGAATAATTT+GGG - chr3_2:11777795-11777814 Msa0395300:three_prime_UTR 20.0%
!! ATTTGTTTGTAATTCTATTC+TGG - chr3_2:11777876-11777895 Msa0395300:three_prime_UTR 20.0%
!! TTTGTTTGTAATTCTATTCT+GGG - chr3_2:11777877-11777896 Msa0395300:three_prime_UTR 20.0%
!!! GTTGCAAATTTTGTTTATAT+AGG - chr3_2:11778068-11778087 Msa0395300:three_prime_UTR 20.0%
!! AGTTAATGACAAAAATTTCA+AGG + chr3_2:11779121-11779140 None:intergenic 20.0%
!! TTATTTCATGTTTAATACTC+CGG - chr3_2:11779213-11779232 Msa0395300:intron 20.0%
!! TATTCAGATAAACAACTTAA+AGG + chr3_2:11779365-11779384 None:intergenic 20.0%
!!! TTAAGTTGTTTATCTGAATA+TGG - chr3_2:11779365-11779384 Msa0395300:intron 20.0%
!! TCAGATATTGTTTAAACATA+TGG - chr3_2:11779687-11779706 Msa0395300:intron 20.0%
!! ATATTGTTTAAACATATGGT+TGG - chr3_2:11779691-11779710 Msa0395300:intron 20.0%
!!! ACCAATTTTATTAAGTGAAA+CGG + chr3_2:11780833-11780852 None:intergenic 20.0%
!! GTGATCTTAAATATTATGAT+GGG - chr3_2:11780851-11780870 Msa0395300:intron 20.0%
!! TGATCTTAAATATTATGATG+GGG - chr3_2:11780852-11780871 Msa0395300:intron 20.0%
!!! TCAAATAAAACTTTAAAGCA+AGG + chr3_2:11781019-11781038 None:intergenic 20.0%
!!! AATAAACTGAAAACATCTTT+TGG + chr3_2:11781114-11781133 None:intergenic 20.0%
!! GAAAATAGATTATAGCTTAT+AGG - chr3_2:11781160-11781179 Msa0395300:CDS 20.0%
!!! TTTAATTAGTTTATCGAAAC+AGG - chr3_2:11781283-11781302 Msa0395300:intron 20.0%
!!! TTAATTAGTTTATCGAAACA+GGG - chr3_2:11781284-11781303 Msa0395300:intron 20.0%
!! AAATAACATCGTGAAATATT+TGG + chr3_2:11781350-11781369 None:intergenic 20.0%
!! TTTAATAGAAAGAGAAAAGA+AGG - chr3_2:11781629-11781648 Msa0395300:intron 20.0%
!! TAAAGATTCAATTAACCTAA+GGG + chr3_2:11781792-11781811 None:intergenic 20.0%
!! TTAAAGATTCAATTAACCTA+AGG + chr3_2:11781793-11781812 None:intergenic 20.0%
!!! AATGTCTTGTTTATTAGATA+TGG - chr3_2:11782424-11782443 Msa0395300:intron 20.0%
!! TAGAAATACAGTGAATAAAA+AGG + chr3_2:11782788-11782807 None:intergenic 20.0%
!! ATATTAGTTACATTAATGCA+AGG + chr3_2:11782897-11782916 None:intergenic 20.0%
!!! TTCATTTTGTAAAATTGGTT+TGG - chr3_2:11783067-11783086 Msa0395300:intron 20.0%
!! AGCAAGTTTAATGTTAAAAT+TGG - chr3_2:11783126-11783145 Msa0395300:CDS 20.0%
! CAACATCATAACTTTCAAAA+GGG + chr3_2:11777786-11777805 None:intergenic 25.0%
! GTTATGATGTTGGAATAATT+TGG - chr3_2:11777794-11777813 Msa0395300:three_prime_UTR 25.0%
! TATGATGTTGGAATAATTTG+GGG - chr3_2:11777796-11777815 Msa0395300:three_prime_UTR 25.0%
!! AATGATACTTTTGTGTGTTT+TGG - chr3_2:11778046-11778065 Msa0395300:three_prime_UTR 25.0%
!!! GAATGATAGTTTTGTGTTTT+TGG - chr3_2:11778205-11778224 Msa0395300:exon 25.0%
! ATTTGTGTCTATAATCAAAG+AGG - chr3_2:11778312-11778331 Msa0395300:intron 25.0%
!!! TTGATACTTTTTCGTGTTTT+TGG - chr3_2:11778343-11778362 Msa0395300:intron 25.0%
!!! ATTTTAACAAAAGGACATAC+TGG + chr3_2:11778465-11778484 None:intergenic 25.0%
! ATAGATTCGAGAAATAAACA+CGG + chr3_2:11778739-11778758 None:intergenic 25.0%
!! GAATGAAGTCTTATATATGA+AGG - chr3_2:11779064-11779083 Msa0395300:intron 25.0%
! AAAGTTGTTTATCCAAAACA+GGG + chr3_2:11779239-11779258 None:intergenic 25.0%
! AAAAGTTGTTTATCCAAAAC+AGG + chr3_2:11779240-11779259 None:intergenic 25.0%
! AAAATGTTATTATCAAGTGG+TGG + chr3_2:11779464-11779483 None:intergenic 25.0%
! GGTAAAATGTTATTATCAAG+TGG + chr3_2:11779467-11779486 None:intergenic 25.0%
!!! ACCATTTGTAATTCTAAAAC+AGG - chr3_2:11779484-11779503 Msa0395300:intron 25.0%
! CATAATAAACCGAGATATAA+AGG - chr3_2:11779791-11779810 Msa0395300:intron 25.0%
! GTGTTATAGCATAACAAAAT+TGG - chr3_2:11779868-11779887 Msa0395300:CDS 25.0%
! GTTTGAATTCAAATCATCTT+TGG - chr3_2:11780124-11780143 Msa0395300:CDS 25.0%
! AAACTAGCAAAAACTAATTC+CGG + chr3_2:11780271-11780290 None:intergenic 25.0%
!!! TCCTAAAGCATTAGTTTTTT+AGG - chr3_2:11780318-11780337 Msa0395300:intron 25.0%
!!! CCTAAAGCATTAGTTTTTTA+GGG - chr3_2:11780319-11780338 Msa0395300:intron 25.0%
! ATGAATCATAACAGACTTAA+AGG + chr3_2:11780413-11780432 None:intergenic 25.0%
! TTGTGAAACAATAAGAACTA+TGG + chr3_2:11780518-11780537 None:intergenic 25.0%
! TCCGTTTCACTTAATAAAAT+TGG - chr3_2:11780829-11780848 Msa0395300:intron 25.0%
! GGTGATCTTAAATATTATGA+TGG - chr3_2:11780850-11780869 Msa0395300:intron 25.0%
!!! AATAAAACTTTAAAGCAAGG+CGG + chr3_2:11781016-11781035 None:intergenic 25.0%
!! TAGATTCATTTCTAGACATA+TGG - chr3_2:11781387-11781406 Msa0395300:intron 25.0%
! AAAGATTCAATTAACCTAAG+GGG + chr3_2:11781791-11781810 None:intergenic 25.0%
! GATGATATAACTTGATTCAA+TGG - chr3_2:11782163-11782182 Msa0395300:CDS 25.0%
! TATAACTTGATTCAATGGTT+AGG - chr3_2:11782168-11782187 Msa0395300:CDS 25.0%
!! TTCAACTTGTTCTTGTTTAT+CGG + chr3_2:11782555-11782574 None:intergenic 25.0%
!!! TTCATAAATGTTGGTGTTTT+TGG - chr3_2:11783012-11783031 Msa0395300:intron 25.0%
!!! TATCATTTCTAGTCAAAATG+AGG - chr3_2:11783156-11783175 Msa0395300:CDS 25.0%
CCAACATCATAACTTTCAAA+AGG + chr3_2:11777787-11777806 None:intergenic 30.0%
!! CCTTTTGAAAGTTATGATGT+TGG - chr3_2:11777784-11777803 Msa0395300:three_prime_UTR 30.0%
TTGTAATTCTATTCTGGGTA+TGG - chr3_2:11777882-11777901 Msa0395300:three_prime_UTR 30.0%
TGCAAAGATGTTGAATTTGT+TGG - chr3_2:11778115-11778134 Msa0395300:three_prime_UTR 30.0%
!!! TTTTTGGTTGCACATTTTGT+AGG - chr3_2:11778221-11778240 Msa0395300:CDS 30.0%
! GAAAATGTCTTGTCTTTTGT+AGG - chr3_2:11778412-11778431 Msa0395300:intron 30.0%
TTAGAAACATTACTGTCATC+CGG + chr3_2:11778495-11778514 None:intergenic 30.0%
TGAAAGTAAGGTTAAGAAAG+AGG - chr3_2:11778554-11778573 Msa0395300:intron 30.0%
TAGATTCGAGAAATAAACAC+GGG + chr3_2:11778738-11778757 None:intergenic 30.0%
AGGTCTGTTAATTTAGACAA+TGG - chr3_2:11778934-11778953 Msa0395300:intron 30.0%
TAATAAGCCTGTCATATATG+AGG - chr3_2:11778975-11778994 Msa0395300:intron 30.0%
GACTTCATTCACATTTGAAA+AGG + chr3_2:11779054-11779073 None:intergenic 30.0%
! ACTTTTGATACATTATGTGC+TGG - chr3_2:11779184-11779203 Msa0395300:intron 30.0%
CTATAAGTGCTTATCATCTA+AGG - chr3_2:11779275-11779294 Msa0395300:intron 30.0%
!!! TCTGAATATGGCTTTTTTGA+TGG - chr3_2:11779377-11779396 Msa0395300:intron 30.0%
!!! GCCTGTTTTAGAATTACAAA+TGG + chr3_2:11779488-11779507 None:intergenic 30.0%
CCAAGAAAGATAAAAGCAAA+CGG - chr3_2:11780059-11780078 Msa0395300:intron 30.0%
CAAGAAAGATAAAAGCAAAC+GGG - chr3_2:11780060-11780079 Msa0395300:intron 30.0%
AATGTTTAGATTAGAGTCAG+TGG - chr3_2:11780083-11780102 Msa0395300:intron 30.0%
TCAAATCATCTTTGGTATTG+AGG - chr3_2:11780132-11780151 Msa0395300:CDS 30.0%
! CAAATCATCTTTGGTATTGA+GGG - chr3_2:11780133-11780152 Msa0395300:CDS 30.0%
! TATTTGAAAGTACGAGAGAA+CGG + chr3_2:11780296-11780315 None:intergenic 30.0%
CCCTAAAAAACTAATGCTTT+AGG + chr3_2:11780322-11780341 None:intergenic 30.0%
!!! AGCATTAGTTTTTTAGGGAT+AGG - chr3_2:11780324-11780343 Msa0395300:intron 30.0%
AACAATAAGAACTATGGTTC+AGG + chr3_2:11780512-11780531 None:intergenic 30.0%
AAAGTTGCCTAAAGATGATT+TGG - chr3_2:11780677-11780696 Msa0395300:intron 30.0%
ATAACCTCCAAATCATCTTT+AGG + chr3_2:11780687-11780706 None:intergenic 30.0%
AAAGTGTATGTGTAATCTGT+AGG + chr3_2:11780810-11780829 None:intergenic 30.0%
AATTGTTCTTGACAACATCA+CGG + chr3_2:11780924-11780943 None:intergenic 30.0%
CAATTCAAATGTTTCATCTC+AGG - chr3_2:11780939-11780958 Msa0395300:intron 30.0%
!! ATAAAACTTTAAAGCAAGGC+GGG + chr3_2:11781015-11781034 None:intergenic 30.0%
! TCTATTTTCTTAAGCCATAC+TGG + chr3_2:11781149-11781168 None:intergenic 30.0%
TGATAAGCTCTTACATCTTA+TGG - chr3_2:11781252-11781271 Msa0395300:CDS 30.0%
AAGCTAAAATCCACATACTA+AGG + chr3_2:11781310-11781329 None:intergenic 30.0%
ATGAATCTAACTAACGTGAT+TGG + chr3_2:11781376-11781395 None:intergenic 30.0%
! ATTCATTTCTAGACATATGG+AGG - chr3_2:11781390-11781409 Msa0395300:intron 30.0%
! TTCATTTCTAGACATATGGA+GGG - chr3_2:11781391-11781410 Msa0395300:intron 30.0%
CAGTTGTTGCAAAAGAATTA+TGG + chr3_2:11781737-11781756 None:intergenic 30.0%
AGCAAGAGAAATTGTACTTA+TGG + chr3_2:11781762-11781781 None:intergenic 30.0%
TGAAGTATATTTAAGCCTAG+TGG - chr3_2:11782232-11782251 Msa0395300:CDS 30.0%
GAAGTATATTTAAGCCTAGT+GGG - chr3_2:11782233-11782252 Msa0395300:CDS 30.0%
! TAAATGTTTCTGTATGCGAT+TGG - chr3_2:11782638-11782657 Msa0395300:intron 30.0%
TCATGTGTAAAATAAAGCTC+AGG - chr3_2:11782663-11782682 Msa0395300:intron 30.0%
!! GAACAAAGGCATTATAATAG+AGG - chr3_2:11782687-11782706 Msa0395300:intron 30.0%
ACACTAGAAATGAAGTAACA+TGG - chr3_2:11782928-11782947 Msa0395300:intron 30.0%
! TGGTGACTATAACTTGTATT+TGG - chr3_2:11783087-11783106 Msa0395300:CDS 30.0%
! GATGAATTCTGAGGAAATTG+TGG + chr3_2:11777622-11777641 None:intergenic 35.0%
! TTGGAATAATTTGGGGTACT+TGG - chr3_2:11777803-11777822 Msa0395300:three_prime_UTR 35.0%
! TGGAATAATTTGGGGTACTT+GGG - chr3_2:11777804-11777823 Msa0395300:three_prime_UTR 35.0%
AATTCTATTCTGGGTATGGT+TGG - chr3_2:11777886-11777905 Msa0395300:three_prime_UTR 35.0%
! TCTTTTGTAGGTTCTTGTTG+TGG - chr3_2:11778424-11778443 Msa0395300:intron 35.0%
! GTCCTTTTGTTAAAATTCCC+CGG - chr3_2:11778469-11778488 Msa0395300:intron 35.0%
!!! GACTCACAGACTTTTAAGAT+TGG - chr3_2:11778621-11778640 Msa0395300:intron 35.0%
TTGCAGAAAACATGAGAACA+AGG + chr3_2:11778702-11778721 None:intergenic 35.0%
! TTTTCTGCAAGTATGTATCG+CGG - chr3_2:11778712-11778731 Msa0395300:intron 35.0%
! GTAGTTGATCGCTTTATTGA+AGG - chr3_2:11778895-11778914 Msa0395300:intron 35.0%
! ATTAACAGACCTTTTGATCC+TGG + chr3_2:11778926-11778945 None:intergenic 35.0%
CATATATGAGGATGTGTCTT+TGG - chr3_2:11778987-11779006 Msa0395300:intron 35.0%
TTTGGAAAGAGGTTCTTTCT+TGG - chr3_2:11779005-11779024 Msa0395300:intron 35.0%
CACTTTCTAAATTCTGAGCA+CGG + chr3_2:11779514-11779533 None:intergenic 35.0%
ACATAGGTTCAGTCTTGATT+TGG + chr3_2:11779537-11779556 None:intergenic 35.0%
TAAACCGAGATATAAAGGCA+TGG - chr3_2:11779796-11779815 Msa0395300:intron 35.0%
TTGACCATGCCTTTATATCT+CGG + chr3_2:11779803-11779822 None:intergenic 35.0%
TAACCAGTGTTGTCAAATAG+CGG - chr3_2:11779840-11779859 Msa0395300:CDS 35.0%
!! CCGTTTGCTTTTATCTTTCT+TGG + chr3_2:11780062-11780081 None:intergenic 35.0%
AAAAGCAGTATTCGCCTTTA+TGG - chr3_2:11780242-11780261 Msa0395300:intron 35.0%
GTTCTCTCGTACTTTCAAAT+AGG - chr3_2:11780295-11780314 Msa0395300:intron 35.0%
! GTTTGTATTTTCTCCTTCAC+CGG - chr3_2:11780372-11780391 Msa0395300:intron 35.0%
! TTTGTATTTTCTCCTTCACC+GGG - chr3_2:11780373-11780392 Msa0395300:intron 35.0%
TCAAATGTTTCATCTCAGGT+TGG - chr3_2:11780943-11780962 Msa0395300:intron 35.0%
TTTCCATTAGCTATCCAGTA+TGG - chr3_2:11781132-11781151 Msa0395300:intron 35.0%
! TCATTTCTAGACATATGGAG+GGG - chr3_2:11781392-11781411 Msa0395300:intron 35.0%
TAAGAAGCAGACTGATAACA+AGG - chr3_2:11781448-11781467 Msa0395300:intron 35.0%
TCCCAGCATAATACTAACAT+TGG - chr3_2:11781490-11781509 Msa0395300:intron 35.0%
GCCAATGTTAGTATTATGCT+GGG + chr3_2:11781494-11781513 None:intergenic 35.0%
AAAAATTGCTTTGACACCGT+TGG - chr3_2:11781525-11781544 Msa0395300:intron 35.0%
AAAATTGCTTTGACACCGTT+GGG - chr3_2:11781526-11781545 Msa0395300:intron 35.0%
ATAGAAAGAGAAAAGAAGGC+AGG - chr3_2:11781633-11781652 Msa0395300:intron 35.0%
TCTAACGTGTAAATGTGCAT+GGG + chr3_2:11781819-11781838 None:intergenic 35.0%
TTCTAACGTGTAAATGTGCA+TGG + chr3_2:11781820-11781839 None:intergenic 35.0%
ACACGTTAGAACATGTCATT+TGG - chr3_2:11781829-11781848 Msa0395300:CDS 35.0%
TTCTTGAAATCCATCACTAG+CGG + chr3_2:11781979-11781998 None:intergenic 35.0%
GTAAGTAATAACTTCCCACT+AGG + chr3_2:11782250-11782269 None:intergenic 35.0%
GTGGGAAGTTATTACTTACT+AGG - chr3_2:11782251-11782270 Msa0395300:CDS 35.0%
CAATTTCCATCCTTCTATAG+CGG - chr3_2:11782495-11782514 Msa0395300:intron 35.0%
AATAAAGCTCAGGTGAACAA+AGG - chr3_2:11782673-11782692 Msa0395300:intron 35.0%
! AGACTTTTCATTCAGAGTGA+TGG - chr3_2:11782717-11782736 Msa0395300:intron 35.0%
!! ATTCAGAGTGATGGATATCT+CGG - chr3_2:11782726-11782745 Msa0395300:intron 35.0%
!! ATGGATATCTCGGTCATTTT+TGG - chr3_2:11782736-11782755 Msa0395300:intron 35.0%
TATCTCCTACTAGAACTTTC+CGG - chr3_2:11782806-11782825 Msa0395300:intron 35.0%
CAACTCCTTTAGTACCTTAT+TGG - chr3_2:11782845-11782864 Msa0395300:intron 35.0%
! ATGCACCAATAAGGTACTAA+AGG + chr3_2:11782853-11782872 None:intergenic 35.0%
TAGTACCTTATTGGTGCATA+AGG - chr3_2:11782854-11782873 Msa0395300:intron 35.0%
AGTACCTTATTGGTGCATAA+GGG - chr3_2:11782855-11782874 Msa0395300:intron 35.0%
GAAGTAACATGGATGTATGT+CGG - chr3_2:11782939-11782958 Msa0395300:intron 35.0%
CTAGTCAAAATGAGGTTTGA+AGG - chr3_2:11783164-11783183 Msa0395300:CDS 35.0%
! TTGTGGATTGTGTGATGATG+CGG + chr3_2:11777605-11777624 None:intergenic 40.0%
GAATTGTGCGATGAATTCTG+AGG + chr3_2:11777631-11777650 None:intergenic 40.0%
AAAGACACTTGCAACAACGT+TGG - chr3_2:11777662-11777681 Msa0395300:intron 40.0%
! TTTTGTTAAAATTCCCCGGC+CGG - chr3_2:11778473-11778492 Msa0395300:intron 40.0%
CCTTACTTTCATGCTCTACA+TGG + chr3_2:11778545-11778564 None:intergenic 40.0%
CCATGTAGAGCATGAAAGTA+AGG - chr3_2:11778542-11778561 Msa0395300:intron 40.0%
! GATTGGTCCTCTTAGTTGTA+TGG - chr3_2:11778638-11778657 Msa0395300:intron 40.0%
TGGCATACCATACAACTAAG+AGG + chr3_2:11778648-11778667 None:intergenic 40.0%
TCTTAGTTGTATGGTATGCC+AGG - chr3_2:11778647-11778666 Msa0395300:intron 40.0%
TTTATGTCTGTCTGATGTGC+AGG - chr3_2:11778791-11778810 Msa0395300:CDS 40.0%
TTATGTCTGTCTGATGTGCA+GGG - chr3_2:11778792-11778811 Msa0395300:CDS 40.0%
GGCATGTATATTGCGCTTTA+AGG - chr3_2:11778813-11778832 Msa0395300:CDS 40.0%
TTTAAGGACTGTCCGTTATG+TGG - chr3_2:11778829-11778848 Msa0395300:CDS 40.0%
TTAAGGACTGTCCGTTATGT+GGG - chr3_2:11778830-11778849 Msa0395300:CDS 40.0%
TCAATATCAGCCCCACATAA+CGG + chr3_2:11778844-11778863 None:intergenic 40.0%
TACACCTTGAAGATCAGCAT+CGG + chr3_2:11778878-11778897 None:intergenic 40.0%
GACACATCCTCATATATGAC+AGG + chr3_2:11778985-11779004 None:intergenic 40.0%
TTGAAAAGGACATACCCTCA+TGG + chr3_2:11779040-11779059 None:intergenic 40.0%
TTGTTTATCCAAAACAGGGC+CGG + chr3_2:11779235-11779254 None:intergenic 40.0%
CGCAGTCAGATAGAAAAAGT+TGG - chr3_2:11779569-11779588 Msa0395300:intron 40.0%
TCAGAGTTATGTTCACAGCT+TGG - chr3_2:11779599-11779618 Msa0395300:intron 40.0%
CTAAGAGTAGTGTATCTGTG+AGG - chr3_2:11779743-11779762 Msa0395300:intron 40.0%
TAGTGTATCTGTGAGGACTT+AGG - chr3_2:11779750-11779769 Msa0395300:intron 40.0%
! TAAAGGCATGGTCAAAATGC+TGG - chr3_2:11779808-11779827 Msa0395300:intron 40.0%
ATGCTGTCAAATAGCAGCTA+TGG - chr3_2:11779932-11779951 Msa0395300:CDS 40.0%
AGATTAGAGTCAGTGGAGAT+TGG - chr3_2:11780090-11780109 Msa0395300:intron 40.0%
!!! GTATTGAGGGTGTTGAGTTT+TGG - chr3_2:11780146-11780165 Msa0395300:CDS 40.0%
ACTAATTCCGGACACCATAA+AGG + chr3_2:11780259-11780278 None:intergenic 40.0%
! TTGTATTTTCTCCTTCACCG+GGG - chr3_2:11780374-11780393 Msa0395300:intron 40.0%
ATGAAACAGGGAAGAGCAAA+AGG + chr3_2:11780485-11780504 None:intergenic 40.0%
GGTTCAGGATGAATGAAACA+GGG + chr3_2:11780497-11780516 None:intergenic 40.0%
TGGTTCAGGATGAATGAAAC+AGG + chr3_2:11780498-11780517 None:intergenic 40.0%
! GTTGCCTAAAGATGATTTGG+AGG - chr3_2:11780680-11780699 Msa0395300:intron 40.0%
!! CGTTAGAACCTTGCTTTTCT+TGG - chr3_2:11780709-11780728 Msa0395300:intron 40.0%
AACATCACGGCGAACATTTA+AGG + chr3_2:11780911-11780930 None:intergenic 40.0%
AAGCCATACTGGATAGCTAA+TGG + chr3_2:11781138-11781157 None:intergenic 40.0%
ATATGGAGGGGATAGAATGA+TGG - chr3_2:11781404-11781423 Msa0395300:intron 40.0%
TTAGTATTATGCTGGGAGTG+GGG + chr3_2:11781487-11781506 None:intergenic 40.0%
GTTAGTATTATGCTGGGAGT+GGG + chr3_2:11781488-11781507 None:intergenic 40.0%
TGTTAGTATTATGCTGGGAG+TGG + chr3_2:11781489-11781508 None:intergenic 40.0%
GGCCAATGTTAGTATTATGC+TGG + chr3_2:11781495-11781514 None:intergenic 40.0%
TGTTATGTTAGTGCGCAAAC+AGG + chr3_2:11781701-11781720 None:intergenic 40.0%
! GAACATGTCATTTGGACTGA+AGG - chr3_2:11781837-11781856 Msa0395300:CDS 40.0%
!!! CGCTACTTTTGCAAGAGAAA+CGG + chr3_2:11781925-11781944 None:intergenic 40.0%
CGTTTCTCTTGCAAAAGTAG+CGG - chr3_2:11781923-11781942 Msa0395300:CDS 40.0%
TAGAGATTCCAGCAAGTCTA+TGG + chr3_2:11782003-11782022 None:intergenic 40.0%
! ACATTGAAATCTGAAGCCAG+TGG - chr3_2:11782023-11782042 Msa0395300:intron 40.0%
AGACTTCCTTAGAAGCCAAA+AGG - chr3_2:11782529-11782548 Msa0395300:intron 40.0%
!! GTTCTTGTTTATCGGCCTTT+TGG + chr3_2:11782547-11782566 None:intergenic 40.0%
! TGCTTTTCCTTTTGCTAGCA+AGG + chr3_2:11782603-11782622 None:intergenic 40.0%
GTTTCCCTTATGCACCAATA+AGG + chr3_2:11782862-11782881 None:intergenic 40.0%
!! GGCCGGGGAATTTTAACAAA+AGG + chr3_2:11778474-11778493 None:intergenic 45.0%
AAACATTACTGTCATCCGGC+CGG + chr3_2:11778491-11778510 None:intergenic 45.0%
TCATATCCCAACGGACACTT+CGG + chr3_2:11778603-11778622 None:intergenic 45.0%
GTCTGTGAGTCATATCCCAA+CGG + chr3_2:11778612-11778631 None:intergenic 45.0%
AGAACAAGGCACACATTTGC+TGG + chr3_2:11778688-11778707 None:intergenic 45.0%
TAAGGACTGTCCGTTATGTG+GGG - chr3_2:11778831-11778850 Msa0395300:CDS 45.0%
ACACCTTGAAGATCAGCATC+GGG + chr3_2:11778877-11778896 None:intergenic 45.0%
! GCTTTATTGAAGGTCATGCC+AGG - chr3_2:11778905-11778924 Msa0395300:intron 45.0%
AAGGTCATGCCAGGATCAAA+AGG - chr3_2:11778914-11778933 Msa0395300:intron 45.0%
! GAGGATGTGTCTTTGGAAAG+AGG - chr3_2:11778994-11779013 Msa0395300:intron 45.0%
! AGGTTCTTTCTTGGTGCAAC+AGG - chr3_2:11779014-11779033 Msa0395300:intron 45.0%
CATAGTCAGCACTTTCATCG+TGG + chr3_2:11779152-11779171 None:intergenic 45.0%
! TTAATACTCCGGCCCTGTTT+TGG - chr3_2:11779224-11779243 Msa0395300:intron 45.0%
! GGTTGGTGCTTAGCAAAAGA+TGG - chr3_2:11779708-11779727 Msa0395300:intron 45.0%
TAGCCGCTATTTGACAACAC+TGG + chr3_2:11779846-11779865 None:intergenic 45.0%
CTGTCAAATAGCAGCTATGG+TGG - chr3_2:11779935-11779954 Msa0395300:CDS 45.0%
GTGTTGTCAATAGCTGATCG+TGG + chr3_2:11780007-11780026 None:intergenic 45.0%
GTATTCGCCTTTATGGTGTC+CGG - chr3_2:11780249-11780268 Msa0395300:intron 45.0%
AAGGACCATTGTTCAAACCC+CGG + chr3_2:11780394-11780413 None:intergenic 45.0%
ACAGGGAAGAGCAAAAGGTA+TGG + chr3_2:11780480-11780499 None:intergenic 45.0%
! AATTTTCTGCAGCCGAGCAA+TGG - chr3_2:11780602-11780621 Msa0395300:intron 45.0%
! ATTTTCTGCAGCCGAGCAAT+GGG - chr3_2:11780603-11780622 Msa0395300:intron 45.0%
AACTGCTATCACCCATTGCT+CGG + chr3_2:11780617-11780636 None:intergenic 45.0%
CACTAGAGCCAAGAAAAGCA+AGG + chr3_2:11780720-11780739 None:intergenic 45.0%
GTTCTCGCAAACAGTCTCAT+AGG + chr3_2:11781067-11781086 None:intergenic 45.0%
CAGACTGATAACAAGGTCGA+GGG - chr3_2:11781455-11781474 Msa0395300:intron 45.0%
CTCTTGCTCTTTAACCCCTT+AGG - chr3_2:11781774-11781793 Msa0395300:CDS 45.0%
AACGTGTAAATGTGCATGGG+TGG + chr3_2:11781816-11781835 None:intergenic 45.0%
! TGTCATTTGGACTGAAGGCA+TGG - chr3_2:11781842-11781861 Msa0395300:CDS 45.0%
!! TCTTGCAAAAGTAGCGGATG+TGG - chr3_2:11781929-11781948 Msa0395300:CDS 45.0%
CGGATGTGGACAAAAGTCTA+GGG - chr3_2:11781943-11781962 Msa0395300:CDS 45.0%
GGATGTGGACAAAAGTCTAG+GGG - chr3_2:11781944-11781963 Msa0395300:CDS 45.0%
GATGAAAAGTCCGCTAGTGA+TGG - chr3_2:11781966-11781985 Msa0395300:intron 45.0%
TCAAGAAGCCATAGACTTGC+TGG - chr3_2:11781992-11782011 Msa0395300:intron 45.0%
AGATAGCCGCTATAGAAGGA+TGG + chr3_2:11782504-11782523 None:intergenic 45.0%
GAACAGATAGCCGCTATAGA+AGG + chr3_2:11782508-11782527 None:intergenic 45.0%
!!! TATCGGCCTTTTGGCTTCTA+AGG + chr3_2:11782538-11782557 None:intergenic 45.0%
ATACACGCCTTGCTAGCAAA+AGG - chr3_2:11782593-11782612 Msa0395300:intron 45.0%
TACTAGAACTTTCCGGTGAC+CGG - chr3_2:11782813-11782832 Msa0395300:intron 45.0%
AAAGGAGTTGTGATCCTCTC+CGG + chr3_2:11782835-11782854 None:intergenic 45.0%
! TGTGTGATGATGCGGTTGGT+TGG + chr3_2:11777597-11777616 None:intergenic 50.0%
! GGATTGTGTGATGATGCGGT+TGG + chr3_2:11777601-11777620 None:intergenic 50.0%
AACATTACTGTCATCCGGCC+GGG + chr3_2:11778490-11778509 None:intergenic 50.0%
!! TGGTGTCGAATAGAAGTGCC+TGG + chr3_2:11778668-11778687 None:intergenic 50.0%
AGACAATGGCGAAGAAGCAG+CGG - chr3_2:11778948-11778967 Msa0395300:intron 50.0%
CTGCAGCTTCAGCAGATCAA+GGG + chr3_2:11779406-11779425 None:intergenic 50.0%
TGCGAACGTCTTCTGCACAT+AGG + chr3_2:11779553-11779572 None:intergenic 50.0%
TTCACAGCTTGGAGCAGTCT+TGG - chr3_2:11779610-11779629 Msa0395300:intron 50.0%
TCACAGCTTGGAGCAGTCTT+GGG - chr3_2:11779611-11779630 Msa0395300:intron 50.0%
GGTGACTGCTGGTAAGTTGT+AGG - chr3_2:11779641-11779660 Msa0395300:intron 50.0%
CATTGTTCAAACCCCGGTGA+AGG + chr3_2:11780388-11780407 None:intergenic 50.0%
CTTCACCGGGGTTTGAACAA+TGG - chr3_2:11780386-11780405 Msa0395300:intron 50.0%
AGTACGACCTTGCAGCTTGA+AGG + chr3_2:11780879-11780898 None:intergenic 50.0%
CGAAACAGGGCCTTAGTATG+TGG - chr3_2:11781297-11781316 Msa0395300:intron 50.0%
GAGGGGATAGAATGATGGCT+TGG - chr3_2:11781409-11781428 Msa0395300:intron 50.0%
! GGGATAGAATGATGGCTTGG+TGG - chr3_2:11781412-11781431 Msa0395300:intron 50.0%
!! TAGAATGATGGCTTGGTGGC+TGG - chr3_2:11781416-11781435 Msa0395300:intron 50.0%
!! AGAATGATGGCTTGGTGGCT+GGG - chr3_2:11781417-11781436 Msa0395300:intron 50.0%
GCAGACTGATAACAAGGTCG+AGG - chr3_2:11781454-11781473 Msa0395300:intron 50.0%
GCGGATGTGGACAAAAGTCT+AGG - chr3_2:11781942-11781961 Msa0395300:CDS 50.0%
! AAGCCAGTGGACTTGAGCAA+CGG - chr3_2:11782036-11782055 Msa0395300:intron 50.0%
! GGTCACCGGAAAGTTCTAGT+AGG + chr3_2:11782814-11782833 None:intergenic 50.0%
ACATTACTGTCATCCGGCCG+GGG + chr3_2:11778489-11778508 None:intergenic 55.0%
! TGTCTCACCGAAGTGTCCGT+TGG - chr3_2:11778593-11778612 Msa0395300:intron 55.0%
! GTCTCACCGAAGTGTCCGTT+GGG - chr3_2:11778594-11778613 Msa0395300:intron 55.0%
GAGCCCGATGCTGATCTTCA+AGG - chr3_2:11778871-11778890 Msa0395300:intron 55.0%
! TCTTGGTGCAACAGGCCATG+AGG - chr3_2:11779022-11779041 Msa0395300:intron 55.0%
! CTTGGTGCAACAGGCCATGA+GGG - chr3_2:11779023-11779042 Msa0395300:intron 55.0%
GCTGCAGCTTCAGCAGATCA+AGG + chr3_2:11779407-11779426 None:intergenic 55.0%
ATGGGGACCTTCAAGCTGCA+AGG - chr3_2:11780869-11780888 Msa0395300:intron 55.0%
!! GAATGATGGCTTGGTGGCTG+GGG - chr3_2:11781418-11781437 Msa0395300:intron 55.0%
GTTGCCAAACAGCTGCCCAA+CGG + chr3_2:11781544-11781563 None:intergenic 55.0%
! AGCCAGTGGACTTGAGCAAC+GGG - chr3_2:11782037-11782056 Msa0395300:intron 55.0%
TACCCGTTGCTCAAGTCCAC+TGG + chr3_2:11782042-11782061 None:intergenic 55.0%
TTGTGATCCTCTCCGGTCAC+CGG + chr3_2:11782828-11782847 None:intergenic 55.0%
GGAGCAGTCTTGGGCATGCT+TGG - chr3_2:11779620-11779639 Msa0395300:intron 60.0%
! TGGGCATGCTTGGTGACTGC+TGG - chr3_2:11779630-11779649 Msa0395300:intron 60.0%
GACACCGTTGGGCAGCTGTT+TGG - chr3_2:11781537-11781556 Msa0395300:intron 60.0%
GAACTTTCCGGTGACCGGAG+AGG - chr3_2:11782818-11782837 Msa0395300:intron 60.0%
!! TGATGGCTTGGTGGCTGGGG+TGG - chr3_2:11781421-11781440 Msa0395300:intron 65.0%
!! GATGGCTTGGTGGCTGGGGT+GGG - chr3_2:11781422-11781441 Msa0395300:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 11777589 11783207 11777589 ID=Msa0395300;Name=Msa0395300
chr3_2 mRNA 11777589 11783207 11777589 ID=Msa0395300-mRNA-1;Parent=Msa0395300;Name=Msa0395300-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|1|1|0.75|0.55|9|600|417
chr3_2 exon 11777589 11777648 11777589 ID=Msa0395300-mRNA-1:exon:2770;Parent=Msa0395300-mRNA-1
chr3_2 exon 11777670 11778281 11777670 ID=Msa0395300-mRNA-1:exon:2769;Parent=Msa0395300-mRNA-1
chr3_2 exon 11778738 11778887 11778738 ID=Msa0395300-mRNA-1:exon:2768;Parent=Msa0395300-mRNA-1
chr3_2 exon 11779836 11779982 11779836 ID=Msa0395300-mRNA-1:exon:2767;Parent=Msa0395300-mRNA-1
chr3_2 exon 11780095 11780182 11780095 ID=Msa0395300-mRNA-1:exon:2766;Parent=Msa0395300-mRNA-1
chr3_2 exon 11781145 11781290 11781145 ID=Msa0395300-mRNA-1:exon:2765;Parent=Msa0395300-mRNA-1
chr3_2 exon 11781752 11781983 11781752 ID=Msa0395300-mRNA-1:exon:2764;Parent=Msa0395300-mRNA-1
chr3_2 exon 11782075 11782362 11782075 ID=Msa0395300-mRNA-1:exon:2763;Parent=Msa0395300-mRNA-1
chr3_2 exon 11783077 11783207 11783077 ID=Msa0395300-mRNA-1:exon:2762;Parent=Msa0395300-mRNA-1
chr3_2 CDS 11783077 11783207 11783077 ID=Msa0395300-mRNA-1:cds;Parent=Msa0395300-mRNA-1
chr3_2 CDS 11782075 11782362 11782075 ID=Msa0395300-mRNA-1:cds;Parent=Msa0395300-mRNA-1
chr3_2 CDS 11781752 11781983 11781752 ID=Msa0395300-mRNA-1:cds;Parent=Msa0395300-mRNA-1
chr3_2 CDS 11781145 11781290 11781145 ID=Msa0395300-mRNA-1:cds;Parent=Msa0395300-mRNA-1
chr3_2 CDS 11780095 11780182 11780095 ID=Msa0395300-mRNA-1:cds;Parent=Msa0395300-mRNA-1
chr3_2 CDS 11779836 11779982 11779836 ID=Msa0395300-mRNA-1:cds;Parent=Msa0395300-mRNA-1
chr3_2 CDS 11778738 11778887 11778738 ID=Msa0395300-mRNA-1:cds;Parent=Msa0395300-mRNA-1
chr3_2 CDS 11778210 11778281 11778210 ID=Msa0395300-mRNA-1:cds;Parent=Msa0395300-mRNA-1
chr3_2 three_prime_UTR 11777670 11778209 11777670 ID=Msa0395300-mRNA-1:three_prime_utr;Parent=Msa0395300-mRNA-1
chr3_2 three_prime_UTR 11777589 11777648 11777589 ID=Msa0395300-mRNA-1:three_prime_utr;Parent=Msa0395300-mRNA-1
Gene Sequence

>Msa0395300

GATCTCCAACCAACCGCATCATCACACAATCCACAATTTCCTCAGAATTCATCGCACAATTCTCTCACAACACAAAGACACTTGCAACAACGTTGGTTCTTTCAACTTCGTCTTTTCTCTCTCTTGATTCTGTTCTTGTTGTGGAGATTCAATATGAAACCAGTATGTCCTTTTGTTAAAATTCCCCGGCCGGATGACAGTAATGTTTCTAAAAAATCGAATGAAAACTCAAATAAACACCATGTAGAGCATGAAAGTAAGGTTAAGAAAGAGGTTAAAAACGCAGCTAGTGTCTCACCGAAGTGTCCGTTGGGATATGACTCACAGACTTTTAAGATTGGTCCTCTTAGTTGTATGGTATGCCAGGCACTTCTATTCGACACCAGCAAATGTGTGCCTTGTTCTCATGTTTTCTGCAAGGCATGTATATTGCGCTTTAAGGACTGTCCGTTATGTGGGGCTGATATTGAGAAGATCGAGCCCGATGCTGATCTTCAAGGTGTAGTTGATCGCTTTATTGAAGGTCATGCCAGGATCAAAAGGTCTGTTAATTTAGACAATGGCGAAGAAGCAGCGGAGAATAATAAGCCTGTCATATATGAGGATGTGTCTTTGGAAAGAGGTTCTTTCTTGGTGCAACAGGCCATGAGGGCATTCCGTGCTCAGAATTTAGAAAGTGCCAAATCAAGACTGAACCTATGTGCAGAAGACGTTCGCAGTCAGATAGAAAAAGTTGGCAACACTTCAGAGTTATGTTCACAGCTTGGAGCAGTCTTGGGCATGCTTGGTGACTGCTGCCGAGCAATGGGTGATAGCAGTTCTGCAGTTACTTATTTTGAAGAAAGTGTTGAATTTCTGTCAAAGTTGCCTAAAGATGATTTGGAGATTACACATACACTTTCCGTTTCACTTAATAAAATTGGTGATCTTAAATATTATGATGGGGACCTTCAAGCTGCAAGGTCGTACTATTTTCAATCCTTAAATGTTCGCCGTGATGTTGTCAAGAACAATTCAAATGTTTCATCTCAGGTCTTAGATGTTGCCGTTTCTCTTGCAAAAGTAGCGGATGTGGACAAAAGTCTAGGGGATGAAAAGTCCGCTAGTGATGGATTTCAAGAAGCCATAGACTTGCTGGAATCTCTAACATTGAAATCTGAAGCCAGTGGACTTGAGCAACGGCGGCTATCTGTTCTAGACTTCCTTAGAAGCCAAAAGGCCGATAAACAAGAACAAGTTGAACAAACAATATGA

Protein sequence

>Msa0395300

DLQPTASSHNPQFPQNSSHNSLTTQRHLQQRWFFQLRLFSLLILFLLWRFNMKPVCPFVKIPRPDDSNVSKKSNENSNKHHVEHESKVKKEVKNAASVSPKCPLGYDSQTFKIGPLSCMVCQALLFDTSKCVPCSHVFCKACILRFKDCPLCGADIEKIEPDADLQGVVDRFIEGHARIKRSVNLDNGEEAAENNKPVIYEDVSLERGSFLVQQAMRAFRAQNLESAKSRLNLCAEDVRSQIEKVGNTSELCSQLGAVLGMLGDCCRAMGDSSSAVTYFEESVEFLSKLPKDDLEITHTLSVSLNKIGDLKYYDGDLQAARSYYFQSLNVRRDVVKNNSNVSSQVLDVAVSLAKVADVDKSLGDEKSASDGFQEAIDLLESLTLKSEASGLEQRRLSVLDFLRSQKADKQEQVEQTI*