AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1372190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1372190 MtrunA17_Chr1g0208271 97.582 579 14 0 1 579 1 579 0.0 1174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1372190 AT1G71040.1 68.070 570 181 1 9 578 12 580 0.0 821
Msa1372190 AT1G23010.1 64.921 573 198 2 8 578 9 580 0.0 804

Find 171 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCAGGGTGTTGATTATT+TGG 0.126666 tig0019271:+124009 None:intergenic
AACCTTCTAGCTGGCTTAAT+TGG 0.137213 tig0019271:-123946 Msa1372190:CDS
TTTGGGTTTGTTTAAGGTTT+TGG 0.157715 tig0019271:-123155 Msa1372190:CDS
TATTCATTTGGGTTTGTTTA+AGG 0.162430 tig0019271:-123161 Msa1372190:CDS
GGTGAAATCTGATGAATTTA+AGG 0.174317 tig0019271:-123119 Msa1372190:CDS
GCATCTGATTCTGCTTATAT+TGG 0.236168 tig0019271:-123607 Msa1372190:CDS
AGTAATATAAAGAGAGAAAA+AGG 0.240570 tig0019271:+126950 None:intergenic
GAACTTGTATTGTAGGAAAA+TGG 0.248707 tig0019271:-122586 Msa1372190:intron
CCATAGACTTTGGGCATATT+AGG 0.248841 tig0019271:+126757 None:intergenic
TTTGGATTTCCATCGCTTTC+GGG 0.251781 tig0019271:+124096 None:intergenic
ATCAACACCCTGGAAATTTA+TGG 0.253088 tig0019271:-124002 Msa1372190:CDS
GTTTGGATTTCCATCGCTTT+CGG 0.285243 tig0019271:+124095 None:intergenic
TGTTGGGGATTTAGTAAGTT+TGG 0.287261 tig0019271:-122064 Msa1372190:three_prime_UTR
CAGTGGCAACCAGAATATTT+TGG 0.298569 tig0019271:-123769 Msa1372190:CDS
GGGAATACCATTGGTTGTTT+TGG 0.306936 tig0019271:+124152 None:intergenic
TTCCACCCTTTCTCATAATC+AGG 0.308245 tig0019271:+123022 None:intergenic
TCACCCACTTCATATTCATT+TGG 0.316177 tig0019271:-123173 Msa1372190:CDS
ATTGCGTCACCAAAATATTC+TGG 0.317816 tig0019271:+123760 None:intergenic
CCATTGAGGGCTTCGATTGT+TGG 0.320385 tig0019271:+124258 None:intergenic
CCTAATATGCCCAAAGTCTA+TGG 0.326346 tig0019271:-126757 Msa1372190:CDS
TTATCATTGTTGACTCTCAT+TGG 0.342861 tig0019271:+122724 None:intergenic
TTTGGGTTCTTGTAATATAG+TGG 0.343682 tig0019271:-122351 Msa1372190:three_prime_UTR
CTCAAATCCACCTTACAATA+AGG 0.347432 tig0019271:-126923 Msa1372190:five_prime_UTR
CACCCACTTCATATTCATTT+GGG 0.348020 tig0019271:-123172 Msa1372190:CDS
ATCTTGAGAGACTTTGATTT+GGG 0.361911 tig0019271:+126712 None:intergenic
TTGGCATGTTCAAGAAGAAA+TGG 0.363926 tig0019271:-126690 Msa1372190:CDS
AATCTTGAGAGACTTTGATT+TGG 0.364281 tig0019271:+126711 None:intergenic
ACCTTGTAGCCATAGACTTT+GGG 0.371381 tig0019271:+126748 None:intergenic
TAAAGCTTGGCCACGTTTAA+CGG 0.379971 tig0019271:-123725 Msa1372190:CDS
CATCTGATTCTGCTTATATT+GGG 0.380154 tig0019271:-123606 Msa1372190:CDS
GTCAATGAAGTGGGGATAGT+TGG 0.385690 tig0019271:+124174 None:intergenic
TTACCACTAGTTTCATCAAC+TGG 0.391577 tig0019271:+123451 None:intergenic
ACCTTCTAGCTGGCTTAATT+GGG 0.392286 tig0019271:-123945 Msa1372190:CDS
TCATGATACCATAAATTTCC+AGG 0.392964 tig0019271:+123994 None:intergenic
GTTTAATCCGTATGCGTAAA+CGG 0.393400 tig0019271:+124305 None:intergenic
ACTTTCGCAATTTCTGTAAC+CGG 0.395052 tig0019271:+123241 None:intergenic
AACCTTGTAGCCATAGACTT+TGG 0.396598 tig0019271:+126747 None:intergenic
TCCCATGGGAGTATGTGATT+TGG 0.396819 tig0019271:+124198 None:intergenic
TCATCATAGCATTATCTTCA+TGG 0.397950 tig0019271:+122777 None:intergenic
AGAGTTTCATTACTCACAAC+TGG 0.408146 tig0019271:+123580 None:intergenic
TTGTTACAAAGATTGTTGTT+AGG 0.409385 tig0019271:-122973 Msa1372190:CDS
AAACACAAAGCAACAATTCC+TGG 0.410216 tig0019271:-124282 Msa1372190:CDS
TCTGTAACCGGTGCTTCATA+AGG 0.422607 tig0019271:+123253 None:intergenic
AGTTGACACGTCACGGATAC+CGG 0.424090 tig0019271:-123395 Msa1372190:CDS
CTATGAGAATTGATATTGCT+TGG 0.425110 tig0019271:-122307 Msa1372190:three_prime_UTR
CACCGCTGGATTCAAAATCA+AGG 0.425944 tig0019271:-124064 Msa1372190:CDS
CAGTGAGAACTCAAAACAAT+AGG 0.426583 tig0019271:+126982 None:intergenic
GTGGGGATAGTTGGGTCCCA+TGG 0.428785 tig0019271:+124183 None:intergenic
AGAGTCAACAATGATAATAT+AGG 0.429928 tig0019271:-122718 Msa1372190:intron
GCTTCACTTGATCATCTTCA+AGG 0.430685 tig0019271:+122751 None:intergenic
AAGGTTCCTGATTATGAGAA+AGG 0.437090 tig0019271:-123028 Msa1372190:CDS
TATGGCTACAAGGTTGTAGA+TGG 0.446660 tig0019271:-126739 Msa1372190:CDS
TCCATCGCTACCTTATTGTA+AGG 0.446787 tig0019271:+126913 None:intergenic
GGTGACGCAATCATTGTAAA+CGG 0.446969 tig0019271:-123748 Msa1372190:CDS
TTTAGTGGTGATTCGATTGA+AGG 0.452301 tig0019271:+123904 None:intergenic
CCAACGACCGTTTACGCATA+CGG 0.458246 tig0019271:-124312 Msa1372190:CDS
TTTGATGCAACTAAGGAGTC+TGG 0.460440 tig0019271:-122917 Msa1372190:CDS
TGTATTCAACGATTCTGATT+CGG 0.465068 tig0019271:+127055 None:intergenic
TCATAATTTGTCTAAAATTG+TGG 0.469765 tig0019271:-122442 Msa1372190:three_prime_UTR
AAATCAAAGTCTCTCAAGAT+TGG 0.470978 tig0019271:-126709 Msa1372190:CDS
CATCAACTGGATCACCGGTT+GGG 0.476683 tig0019271:+123464 None:intergenic
ATGGTATCATGATCATGCTA+TGG 0.476987 tig0019271:-123983 Msa1372190:CDS
TCCCAATTAAGCCAGCTAGA+AGG 0.480033 tig0019271:+123944 None:intergenic
GTGTGTGGAGATTCCATTGA+GGG 0.480167 tig0019271:+124245 None:intergenic
ACCAGAGTCAACCTTCTAGC+TGG 0.483798 tig0019271:-123955 Msa1372190:CDS
TATGCGTAAACGGTCGTTGG+TGG 0.488511 tig0019271:+124315 None:intergenic
GCGTTCAAATACAAATGAAT+CGG 0.488677 tig0019271:+123280 None:intergenic
ACTGGATCACCGGTTGGGTA+AGG 0.488939 tig0019271:+123469 None:intergenic
TGGTATCATGATCATGCTAT+GGG 0.489530 tig0019271:-123982 Msa1372190:CDS
ACACTTGATAAATCAACAAT+CGG 0.492745 tig0019271:+123355 None:intergenic
TGAAGGGTCGCGAATGATGT+AGG 0.499265 tig0019271:+123921 None:intergenic
TCAATGAAGTGGGGATAGTT+GGG 0.499761 tig0019271:+124175 None:intergenic
ATTCGATCGTAGCTTTAAAA+CGG 0.500286 tig0019271:-123842 Msa1372190:CDS
TTGATATTGCTTGGAATAGA+CGG 0.502899 tig0019271:-122298 Msa1372190:three_prime_UTR
CCAACAATCGAAGCCCTCAA+TGG 0.506441 tig0019271:-124258 Msa1372190:CDS
ATACATACCAATGCAACGTA+TGG 0.508861 tig0019271:-122941 Msa1372190:CDS
CTGATTCTGCAATCTTCAGA+AGG 0.509527 tig0019271:-122253 Msa1372190:three_prime_UTR
GCAGCTTATCCTTACCCAAC+CGG 0.511134 tig0019271:-123478 Msa1372190:CDS
CATGGGAGTATGTGATTTGG+AGG 0.511892 tig0019271:+124201 None:intergenic
CGTGTGTAGTGAAGTTGATC+AGG 0.516280 tig0019271:-122144 Msa1372190:three_prime_UTR
TGGCATGTTCAAGAAGAAAT+GGG 0.517657 tig0019271:-126689 Msa1372190:intron
TGGGGATAGTTGGGTCCCAT+GGG 0.525794 tig0019271:+124184 None:intergenic
GGTTACAGAAATTGCGAAAG+TGG 0.529348 tig0019271:-123239 Msa1372190:CDS
AGCAAAGCTACACAGTTCAT+AGG 0.530126 tig0019271:-122513 Msa1372190:three_prime_UTR
CTCCAAATCACATACTCCCA+TGG 0.532484 tig0019271:-124200 Msa1372190:CDS
ATCAACAAACATCTTCAGCT+TGG 0.534688 tig0019271:+126786 None:intergenic
TCATCAACTGGATCACCGGT+TGG 0.535108 tig0019271:+123463 None:intergenic
TGCACGTGGGAAGAAAGTTA+AGG 0.536279 tig0019271:-123047 Msa1372190:CDS
AGTTTCATCAACTGGATCAC+CGG 0.536991 tig0019271:+123459 None:intergenic
ATCAAACCCATACGTTGCAT+TGG 0.538238 tig0019271:+122934 None:intergenic
GTATGGGTTTGATGCAACTA+AGG 0.543489 tig0019271:-122924 Msa1372190:CDS
TGATGATGATGATGTTGATA+AGG 0.545961 tig0019271:+126834 None:intergenic
ACCTTACAATAAGGTAGCGA+TGG 0.548168 tig0019271:-126914 Msa1372190:exon
AACTACAGTGGGAATACCAT+TGG 0.548211 tig0019271:+124143 None:intergenic
TTCTAAACACCATTCGTCAA+GGG 0.549756 tig0019271:-122183 Msa1372190:three_prime_UTR
TCTAAACACCATTCGTCAAG+GGG 0.549913 tig0019271:-122182 Msa1372190:three_prime_UTR
AGGTTCCTGATTATGAGAAA+GGG 0.549939 tig0019271:-123027 Msa1372190:CDS
AATCACATACCACACCTCAC+TGG 0.559642 tig0019271:+123213 None:intergenic
AGTTGATGAAACTAGTGGTA+AGG 0.560599 tig0019271:-123449 Msa1372190:CDS
CGCGAAACCTTATGAAGCAC+CGG 0.561477 tig0019271:-123260 Msa1372190:CDS
GCCCAAAGTCTATGGCTACA+AGG 0.562188 tig0019271:-126749 Msa1372190:CDS
ATCGCTACCTTATTGTAAGG+TGG 0.562848 tig0019271:+126916 None:intergenic
AATGTGTTTAAGATGAGACC+TGG 0.563487 tig0019271:-122998 Msa1372190:CDS
AGGGCTTCGATTGTTGGACC+AGG 0.563868 tig0019271:+124264 None:intergenic
ATTCTGATTCGGAGATTGCG+TGG 0.566742 tig0019271:+127066 None:intergenic
TCATTGTAAACGGTAAAGCT+TGG 0.568812 tig0019271:-123738 Msa1372190:CDS
AAACCCAAATGAATATGAAG+TGG 0.568961 tig0019271:+123169 None:intergenic
ATGCGTAAACGGTCGTTGGT+GGG 0.572265 tig0019271:+124316 None:intergenic
ACCGCTGGATTCAAAATCAA+GGG 0.573346 tig0019271:-124063 Msa1372190:CDS
ACGGATACCGGAAAAGCTTG+TGG 0.573498 tig0019271:-123383 Msa1372190:CDS
GTTACAGAAATTGCGAAAGT+GGG 0.575845 tig0019271:-123238 Msa1372190:CDS
TTAGTGGTGATTCGATTGAA+GGG 0.576663 tig0019271:+123905 None:intergenic
AGACTTTGGGCATATTAGGA+AGG 0.581208 tig0019271:+126761 None:intergenic
ATTCATGAACCCGAAAGCGA+TGG 0.581864 tig0019271:-124105 Msa1372190:CDS
CCGTATGCGTAAACGGTCGT+TGG 0.582812 tig0019271:+124312 None:intergenic
CTTCACTTGATCATCTTCAA+GGG 0.582949 tig0019271:+122752 None:intergenic
TTCTGATTCGGAGATTGCGT+GGG 0.582977 tig0019271:+127067 None:intergenic
TACATACCAATGCAACGTAT+GGG 0.583012 tig0019271:-122940 Msa1372190:CDS
TATCAAGTGTGACGCGCACA+CGG 0.586422 tig0019271:-123342 Msa1372190:CDS
TCCAAATCACATACTCCCAT+GGG 0.586864 tig0019271:-124199 Msa1372190:CDS
TCAAAATCAAGGGACCCACT+TGG 0.588153 tig0019271:-124053 Msa1372190:CDS
CATGATACCATAAATTTCCA+GGG 0.588834 tig0019271:+123995 None:intergenic
ATAACGTCTGTGATCTCAGA+TGG 0.593919 tig0019271:+123550 None:intergenic
GCCAGCTAGAAGGTTGACTC+TGG 0.594113 tig0019271:+123954 None:intergenic
TCATCAATGCAAGTAACGCT+AGG 0.595248 tig0019271:-123675 Msa1372190:CDS
TTCCTGATTATGAGAAAGGG+TGG 0.596715 tig0019271:-123024 Msa1372190:CDS
ATTCTAAACACCATTCGTCA+AGG 0.599748 tig0019271:-122184 Msa1372190:three_prime_UTR
TGATTCTGCAATCTTCAGAA+GGG 0.604374 tig0019271:-122252 Msa1372190:three_prime_UTR
TGCCACTGTGGATGAATCGT+AGG 0.604393 tig0019271:+123784 None:intergenic
TCATTGACCAAAACAACCAA+TGG 0.609702 tig0019271:-124159 Msa1372190:CDS
GCTACTTTCTTGTAAACACT+CGG 0.610756 tig0019271:-122537 Msa1372190:three_prime_UTR
CACGTGGATGAGCATGCACG+TGG 0.614681 tig0019271:-123061 Msa1372190:CDS
CCGTGGAGATGAACTACAGT+GGG 0.615840 tig0019271:+124132 None:intergenic
GTGAGTAATGAAACTCTTGT+GGG 0.617633 tig0019271:-123574 Msa1372190:CDS
GAATCTCCACACACGTGACG+TGG 0.619087 tig0019271:-124236 Msa1372190:CDS
GATCGTAGCTTTAAAACGGA+CGG 0.621074 tig0019271:-123838 Msa1372190:CDS
ATGTGTTTAAGATGAGACCT+GGG 0.622195 tig0019271:-122997 Msa1372190:CDS
TGAATGAGAGCAAATTTGTG+AGG 0.624348 tig0019271:+122216 None:intergenic
ATCGTTGAATACATATCGAA+CGG 0.625734 tig0019271:-127045 Msa1372190:five_prime_UTR
ACAATCTTTGTAACAAACCC+AGG 0.627391 tig0019271:+122980 None:intergenic
AACCCAAATGAATATGAAGT+GGG 0.627966 tig0019271:+123170 None:intergenic
AAAATGGCATACATATGATG+TGG 0.628527 tig0019271:-122570 Msa1372190:three_prime_UTR
TGTGAGTAATGAAACTCTTG+TGG 0.629319 tig0019271:-123575 Msa1372190:CDS
CCCACTGTAGTTCATCTCCA+CGG 0.633373 tig0019271:-124132 Msa1372190:CDS
GCCACTGTGGATGAATCGTA+GGG 0.636004 tig0019271:+123785 None:intergenic
TATCCAAATAATCAACACCC+TGG 0.637082 tig0019271:-124012 Msa1372190:CDS
AAATATTCTGGTTGCCACTG+TGG 0.640257 tig0019271:+123772 None:intergenic
CACGTGCATGCTCATCCACG+TGG 0.643363 tig0019271:+123062 None:intergenic
AAGTGGGGTCCAGTGAGGTG+TGG 0.652065 tig0019271:-123222 Msa1372190:CDS
GATCCAGTTGATGAAACTAG+TGG 0.655275 tig0019271:-123454 Msa1372190:CDS
AAGTAAATATATGCATACAC+AGG 0.662969 tig0019271:-122473 Msa1372190:three_prime_UTR
TGGTTTAAGATTTGTACACG+TGG 0.663606 tig0019271:-123629 Msa1372190:CDS
ATGGGAGTATGTGATTTGGA+GGG 0.668212 tig0019271:+124202 None:intergenic
TTACAGAAATTGCGAAAGTG+GGG 0.671324 tig0019271:-123237 Msa1372190:CDS
CGTGTGTGGAGATTCCATTG+AGG 0.674486 tig0019271:+124244 None:intergenic
TGCGAAAGTGGGGTCCAGTG+AGG 0.677654 tig0019271:-123227 Msa1372190:CDS
CTACGATCGAATAACATCAA+CGG 0.684384 tig0019271:+123853 None:intergenic
TAAACACCATTCGTCAAGGG+GGG 0.690000 tig0019271:-122180 Msa1372190:three_prime_UTR
CTAAACACCATTCGTCAAGG+GGG 0.692297 tig0019271:-122181 Msa1372190:three_prime_UTR
CGACGTCGTACCGTTAAACG+TGG 0.694589 tig0019271:+123715 None:intergenic
CGGGTTCATGAATTCCACCG+TGG 0.697997 tig0019271:+124115 None:intergenic
TCGTTGGTGGGAGATCTCTG+TGG 0.702433 tig0019271:+124328 None:intergenic
GTGTAGTGAAGTTGATCAGG+TGG 0.707288 tig0019271:-122141 Msa1372190:three_prime_UTR
ACCGTGGAGATGAACTACAG+TGG 0.716142 tig0019271:+124131 None:intergenic
AAATCGAATTCGTTACCGTG+TGG 0.717800 tig0019271:+123877 None:intergenic
TCACCACTAAAATTACCACA+CGG 0.733048 tig0019271:-123892 Msa1372190:CDS
TGAGTAATGAAACTCTTGTG+GGG 0.737873 tig0019271:-123573 Msa1372190:CDS
ACCCTACGATTCATCCACAG+TGG 0.754604 tig0019271:-123786 Msa1372190:CDS
TGATGCTGTGAAGTGCCACG+TGG 0.762196 tig0019271:-123077 Msa1372190:CDS
ACTGTAGTTCATCTCCACGG+TGG 0.766322 tig0019271:-124129 Msa1372190:CDS
ACGTGGATGAGCATGCACGT+GGG 0.795561 tig0019271:-123060 Msa1372190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAATGTAAAAATTTAATA+TGG + tig0019271:122824-122843 None:intergenic 10.0%
!!! TTTATTACTTTTTTAAACAT+GGG + tig0019271:123445-123464 None:intergenic 10.0%
!!! TTTTATTACTTTTTTAAACA+TGG + tig0019271:123446-123465 None:intergenic 10.0%
!!! CATATTTAAATATTTTTCAT+TGG - tig0019271:123583-123602 Msa1372190:CDS 10.0%
!!! ACTCATTTATTATATTTTAA+AGG - tig0019271:124244-124263 Msa1372190:CDS 10.0%
!!! ATTTTTAGAAATATCTCTTT+AGG - tig0019271:123783-123802 Msa1372190:CDS 15.0%
!!! TTTTTAGAAATATCTCTTTA+GGG - tig0019271:123784-123803 Msa1372190:CDS 15.0%
!! AAATATAATAAATGAGTTTG+AGG + tig0019271:124241-124260 None:intergenic 15.0%
!!! ATATTTTTATAAAACACCTA+TGG - tig0019271:124426-124445 Msa1372190:intron 15.0%
!! GTAGAATTAAAATTAAACAA+TGG + tig0019271:124645-124664 None:intergenic 15.0%
!!! TATGAAATTTGTAATTTTAC+CGG - tig0019271:125709-125728 Msa1372190:intron 15.0%
!! AGTAATATAAAGAGAGAAAA+AGG + tig0019271:122187-122206 None:intergenic 20.0%
!! TATCTAAATTAAAAAAACCC+AGG + tig0019271:122715-122734 None:intergenic 20.0%
!! TAGATAACTTTCTTTCTTAT+TGG - tig0019271:122729-122748 Msa1372190:three_prime_UTR 20.0%
!! AGTTCAATCAAAATAGTTAA+TGG - tig0019271:122789-122808 Msa1372190:intron 20.0%
!!! ATTGATTTTATCTTCCAAAA+AGG + tig0019271:122967-122986 None:intergenic 20.0%
!!! TATTACTCATTTTTACAAGT+GGG + tig0019271:123525-123544 None:intergenic 20.0%
!!! AGAGATATTTCTAAAAATAG+TGG + tig0019271:123781-123800 None:intergenic 20.0%
!! CTATATTTACCCTAAATTTA+CGG - tig0019271:123880-123899 Msa1372190:CDS 20.0%
!!! AATTTTAGGAATGAAATCTA+AGG + tig0019271:124145-124164 None:intergenic 20.0%
!! AAAAAATAAGACAAAGGAAA+AGG - tig0019271:124379-124398 Msa1372190:intron 20.0%
!! AATATCTACATCAAAATTGA+AGG + tig0019271:126334-126353 None:intergenic 20.0%
!!! TTCAATTTTGATGTAGATAT+TGG - tig0019271:126333-126352 Msa1372190:intron 20.0%
!! AAAACATAAGAAACAAATGT+AGG + tig0019271:126496-126515 None:intergenic 20.0%
!!! TCATAATTTGTCTAAAATTG+TGG - tig0019271:126692-126711 Msa1372190:CDS 20.0%
!!! AGATTAATTGCATTTGTTTT+TGG - tig0019271:126755-126774 Msa1372190:CDS 20.0%
!!! TAGTGTAGTTTTTTTTTTGT+TGG - tig0019271:127053-127072 Msa1372190:five_prime_UTR 20.0%
!!! AGTGTAGTTTTTTTTTTGTT+GGG - tig0019271:127054-127073 Msa1372190:five_prime_UTR 20.0%
! AATAAAGACAACACAATAAG+CGG + tig0019271:122520-122539 None:intergenic 25.0%
! AAACAAGTAAAGCATGAATT+TGG + tig0019271:122551-122570 None:intergenic 25.0%
!! ATCTCTAGATAATTTTTCTG+TGG - tig0019271:122651-122670 Msa1372190:intron 25.0%
!!! AAATGTTAACTTGTTCTCTT+GGG + tig0019271:122862-122881 None:intergenic 25.0%
!!! AAAATGTTAACTTGTTCTCT+TGG + tig0019271:122863-122882 None:intergenic 25.0%
! ATTTATTACACATGAAGAGA+AGG - tig0019271:122913-122932 Msa1372190:CDS 25.0%
! TTCCATAAACATTGTGTTTA+CGG + tig0019271:122992-123011 None:intergenic 25.0%
!! TGAAAGTGACTTATTTCTTT+GGG + tig0019271:123247-123266 None:intergenic 25.0%
!! TTGAAAGTGACTTATTTCTT+TGG + tig0019271:123248-123267 None:intergenic 25.0%
! GTAATAAAATGTGTACTACT+TGG - tig0019271:123457-123476 Msa1372190:CDS 25.0%
! TATTACTTCTTTATGCAAGT+GGG + tig0019271:123484-123503 None:intergenic 25.0%
! TTATTACTTCTTTATGCAAG+TGG + tig0019271:123485-123504 None:intergenic 25.0%
! GTAATAAAATGTGTACTACT+TGG - tig0019271:123457-123476 Msa1372190:CDS 25.0%
!!! CTATTACTCATTTTTACAAG+TGG + tig0019271:123526-123545 None:intergenic 25.0%
! GGAATTGTAATAATCAATCA+TGG + tig0019271:123930-123949 None:intergenic 25.0%
! TGTAAATTTGTAGCATTTGA+TGG + tig0019271:123957-123976 None:intergenic 25.0%
!!! AGTTGTCACTAAATTTTTAG+AGG - tig0019271:124088-124107 Msa1372190:CDS 25.0%
!!! ACTAAATTTTTAGAGGACAT+GGG - tig0019271:124095-124114 Msa1372190:CDS 25.0%
!!! ACATTTTTGGACAACTATAA+CGG - tig0019271:124196-124215 Msa1372190:CDS 25.0%
!! AATGATTTTGCAAATATTCG+TGG - tig0019271:124314-124333 Msa1372190:CDS 25.0%
! TGGAGAAAAAAATAAGACAA+AGG - tig0019271:124373-124392 Msa1372190:intron 25.0%
! AATATTGTGATCAATACCAT+AGG + tig0019271:124445-124464 None:intergenic 25.0%
!!! TATGGTATTGATCACAATAT+TGG - tig0019271:124444-124463 Msa1372190:intron 25.0%
! ACACTTGATAAATCAACAAT+CGG + tig0019271:125782-125801 None:intergenic 25.0%
!! TATTCATTTGGGTTTGTTTA+AGG - tig0019271:125973-125992 Msa1372190:intron 25.0%
!! TTGTTACAAAGATTGTTGTT+AGG - tig0019271:126161-126180 Msa1372190:intron 25.0%
! AGAGTCAACAATGATAATAT+AGG - tig0019271:126416-126435 Msa1372190:intron 25.0%
! AAGTAAATATATGCATACAC+AGG - tig0019271:126661-126680 Msa1372190:intron 25.0%
!!! ATTTGTTTTTGGTCGAATTT+GGG - tig0019271:126766-126785 Msa1372190:CDS 25.0%
!!! ACCTCAATTTTGTTTTTCTA+TGG - tig0019271:127026-127045 Msa1372190:five_prime_UTR 25.0%
! ACCATAGAAAAACAAAATTG+AGG + tig0019271:127030-127049 None:intergenic 25.0%
!!! GTGTAGTTTTTTTTTTGTTG+GGG - tig0019271:127055-127074 Msa1372190:five_prime_UTR 25.0%
TGTATTCAACGATTCTGATT+CGG + tig0019271:122082-122101 None:intergenic 30.0%
ATCGTTGAATACATATCGAA+CGG - tig0019271:122089-122108 Msa1372190:three_prime_UTR 30.0%
! TGATGATGATGATGTTGATA+AGG + tig0019271:122303-122322 None:intergenic 30.0%
! ATCTTGAGAGACTTTGATTT+GGG + tig0019271:122425-122444 None:intergenic 30.0%
AATCTTGAGAGACTTTGATT+TGG + tig0019271:122426-122445 None:intergenic 30.0%
AAATCAAAGTCTCTCAAGAT+TGG - tig0019271:122425-122444 Msa1372190:three_prime_UTR 30.0%
ATCCTAAGATTCATGAACTT+TGG + tig0019271:122587-122606 None:intergenic 30.0%
AATACAAAGTTTCTGATACC+TGG - tig0019271:122694-122713 Msa1372190:intron 30.0%
ATACAAAGTTTCTGATACCT+GGG - tig0019271:122695-122714 Msa1372190:intron 30.0%
!! AATGTTAACTTGTTCTCTTG+GGG + tig0019271:122861-122880 None:intergenic 30.0%
!!! TTTTTTGCATTTGTCACTGA+AGG + tig0019271:123217-123236 None:intergenic 30.0%
! TGGTATTAAAGCATCCAAAA+TGG + tig0019271:123730-123749 None:intergenic 30.0%
!! AAGAAGGTACCGTAAATTTA+GGG + tig0019271:123892-123911 None:intergenic 30.0%
!! AAAGAAGGTACCGTAAATTT+AGG + tig0019271:123893-123912 None:intergenic 30.0%
TTTGTAGCATTTGATGGAAA+AGG + tig0019271:123951-123970 None:intergenic 30.0%
GTTATAGTTGATTATGCATC+TGG + tig0019271:124041-124060 None:intergenic 30.0%
!! CACTAAATTTTTAGAGGACA+TGG - tig0019271:124094-124113 Msa1372190:CDS 30.0%
! TGAAGAAAGTATAGAACCTT+GGG + tig0019271:124289-124308 None:intergenic 30.0%
! TTGAAGAAAGTATAGAACCT+TGG + tig0019271:124290-124309 None:intergenic 30.0%
ATAATTCATTCACCAACTAG+TGG - tig0019271:124473-124492 Msa1372190:intron 30.0%
!!! TAAGATCTTTTTAGAGCTTG+TGG + tig0019271:124500-124519 None:intergenic 30.0%
AATTAAACAATGGTCCAAAG+TGG + tig0019271:124635-124654 None:intergenic 30.0%
GCATTATAGAAAACAAGTTG+TGG + tig0019271:124779-124798 None:intergenic 30.0%
!!! TATGACTTTTTTGTCCAAGT+GGG + tig0019271:125098-125117 None:intergenic 30.0%
!!! ATATGACTTTTTTGTCCAAG+TGG + tig0019271:125099-125118 None:intergenic 30.0%
CATGATACCATAAATTTCCA+GGG + tig0019271:125142-125161 None:intergenic 30.0%
TCATGATACCATAAATTTCC+AGG + tig0019271:125143-125162 None:intergenic 30.0%
!! ATTCGATCGTAGCTTTAAAA+CGG - tig0019271:125292-125311 Msa1372190:intron 30.0%
! TCGATTTTCATGAATTCAAC+TGG - tig0019271:125320-125339 Msa1372190:intron 30.0%
! CGATTTTCATGAATTCAACT+GGG - tig0019271:125321-125340 Msa1372190:intron 30.0%
!!! TTTAGACTCTTTTTCAGCAA+TGG - tig0019271:125485-125504 Msa1372190:intron 30.0%
CATCTGATTCTGCTTATATT+GGG - tig0019271:125528-125547 Msa1372190:intron 30.0%
GCGTTCAAATACAAATGAAT+CGG + tig0019271:125857-125876 None:intergenic 30.0%
AACCCAAATGAATATGAAGT+GGG + tig0019271:125967-125986 None:intergenic 30.0%
AAACCCAAATGAATATGAAG+TGG + tig0019271:125968-125987 None:intergenic 30.0%
!! TTTGGGTTTGTTTAAGGTTT+TGG - tig0019271:125979-125998 Msa1372190:intron 30.0%
GGTGAAATCTGATGAATTTA+AGG - tig0019271:126015-126034 Msa1372190:intron 30.0%
TCATCATAGCATTATCTTCA+TGG + tig0019271:126360-126379 None:intergenic 30.0%
!! TTATCATTGTTGACTCTCAT+TGG + tig0019271:126413-126432 None:intergenic 30.0%
AAAATGGCATACATATGATG+TGG - tig0019271:126564-126583 Msa1372190:intron 30.0%
!!! CATTTGTTTTTGGTCGAATT+TGG - tig0019271:126765-126784 Msa1372190:CDS 30.0%
! TTTGGGTTCTTGTAATATAG+TGG - tig0019271:126783-126802 Msa1372190:CDS 30.0%
CTATGAGAATTGATATTGCT+TGG - tig0019271:126827-126846 Msa1372190:CDS 30.0%
TTGATATTGCTTGGAATAGA+CGG - tig0019271:126836-126855 Msa1372190:CDS 30.0%
CAGTGAGAACTCAAAACAAT+AGG + tig0019271:122155-122174 None:intergenic 35.0%
CTCAAATCCACCTTACAATA+AGG - tig0019271:122211-122230 Msa1372190:three_prime_UTR 35.0%
ATCAACAAACATCTTCAGCT+TGG + tig0019271:122351-122370 None:intergenic 35.0%
TTGGCATGTTCAAGAAGAAA+TGG - tig0019271:122444-122463 Msa1372190:three_prime_UTR 35.0%
TGGCATGTTCAAGAAGAAAT+GGG - tig0019271:122445-122464 Msa1372190:three_prime_UTR 35.0%
CATGCTTTACTTGTTTCGAT+AGG - tig0019271:122555-122574 Msa1372190:three_prime_UTR 35.0%
GACCAAAGTTCATGAATCTT+AGG - tig0019271:122582-122601 Msa1372190:intron 35.0%
CTCCGTAAACACAATGTTTA+TGG - tig0019271:122987-123006 Msa1372190:CDS 35.0%
! CTTAAAGCATCTCCAATAGA+GGG - tig0019271:123299-123318 Msa1372190:CDS 35.0%
! ATTTTTCTTCCTCCAATGGA+GGG + tig0019271:123358-123377 None:intergenic 35.0%
! AATTTTTCTTCCTCCAATGG+AGG + tig0019271:123359-123378 None:intergenic 35.0%
! CTCAATTTTTCTTCCTCCAA+TGG + tig0019271:123362-123381 None:intergenic 35.0%
TATAGTTGTCCGTTCCTTAA+CGG + tig0019271:123388-123407 None:intergenic 35.0%
CCAATGGCAATACACTAATA+AGG + tig0019271:123612-123631 None:intergenic 35.0%
CCTTATTAGTGTATTGCCAT+TGG - tig0019271:123609-123628 Msa1372190:CDS 35.0%
TAAGAACTCAATGACTCCAA+TGG + tig0019271:123628-123647 None:intergenic 35.0%
GGAGTCATTGAGTTCTTAAT+AGG - tig0019271:123630-123649 Msa1372190:CDS 35.0%
TAAATAAGTGATGTGTCACG+TGG - tig0019271:123672-123691 Msa1372190:CDS 35.0%
AAATAAGTGATGTGTCACGT+GGG - tig0019271:123673-123692 Msa1372190:CDS 35.0%
CATTTAAGGAGTCCTTGTTA+GGG - tig0019271:123699-123718 Msa1372190:CDS 35.0%
AAAATGGTAGTTCCCTAACA+AGG + tig0019271:123714-123733 None:intergenic 35.0%
! TTGTTAGGGAACTACCATTT+TGG - tig0019271:123713-123732 Msa1372190:CDS 35.0%
! GGTACCTTCTTTTCTCAATA+AGG - tig0019271:123901-123920 Msa1372190:CDS 35.0%
GCTACCTTATTGAGAAAAGA+AGG + tig0019271:123908-123927 None:intergenic 35.0%
AAGGAACTCTGCTTAAAAGA+AGG + tig0019271:123983-124002 None:intergenic 35.0%
ACTATAACGGTTGTTCCAAA+CGG - tig0019271:124209-124228 Msa1372190:CDS 35.0%
AGTTTGAGGAAATTACCGTT+TGG + tig0019271:124227-124246 None:intergenic 35.0%
TTGGGTCATCAAAAAAGGAA+GGG + tig0019271:124271-124290 None:intergenic 35.0%
TGGATGACACTAAAAAGGTT+GGG + tig0019271:124573-124592 None:intergenic 35.0%
GGAGAATGAGTTATCACTAT+CGG + tig0019271:124614-124633 None:intergenic 35.0%
TGATAACTCATTCTCCACTT+TGG - tig0019271:124618-124637 Msa1372190:intron 35.0%
GTTTAATCCGTATGCGTAAA+CGG + tig0019271:124832-124851 None:intergenic 35.0%
AAACACAAAGCAACAATTCC+TGG - tig0019271:124852-124871 Msa1372190:intron 35.0%
!!! TTGTTTTGGTCAATGAAGTG+GGG + tig0019271:124971-124990 None:intergenic 35.0%
!!! GTTGTTTTGGTCAATGAAGT+GGG + tig0019271:124972-124991 None:intergenic 35.0%
TCATTGACCAAAACAACCAA+TGG - tig0019271:124975-124994 Msa1372190:intron 35.0%
TATCCAAATAATCAACACCC+TGG - tig0019271:125122-125141 Msa1372190:intron 35.0%
!! TTTCCAGGGTGTTGATTATT+TGG + tig0019271:125128-125147 None:intergenic 35.0%
ATCAACACCCTGGAAATTTA+TGG - tig0019271:125132-125151 Msa1372190:intron 35.0%
ATGGTATCATGATCATGCTA+TGG - tig0019271:125151-125170 Msa1372190:intron 35.0%
TGGTATCATGATCATGCTAT+GGG - tig0019271:125152-125171 Msa1372190:intron 35.0%
TTAGTGGTGATTCGATTGAA+GGG + tig0019271:125232-125251 None:intergenic 35.0%
TTTAGTGGTGATTCGATTGA+AGG + tig0019271:125233-125252 None:intergenic 35.0%
TCACCACTAAAATTACCACA+CGG - tig0019271:125242-125261 Msa1372190:intron 35.0%
! TTACCGTGTGGTAATTTTAG+TGG + tig0019271:125248-125267 None:intergenic 35.0%
CTACGATCGAATAACATCAA+CGG + tig0019271:125284-125303 None:intergenic 35.0%
ATTGCGTCACCAAAATATTC+TGG + tig0019271:125377-125396 None:intergenic 35.0%
TCATTGTAAACGGTAAAGCT+TGG - tig0019271:125396-125415 Msa1372190:intron 35.0%
! TGGTTTAAGATTTGTACACG+TGG - tig0019271:125505-125524 Msa1372190:intron 35.0%
GCATCTGATTCTGCTTATAT+TGG - tig0019271:125527-125546 Msa1372190:intron 35.0%
AGAGTTTCATTACTCACAAC+TGG + tig0019271:125557-125576 None:intergenic 35.0%
TGTGAGTAATGAAACTCTTG+TGG - tig0019271:125559-125578 Msa1372190:intron 35.0%
GTGAGTAATGAAACTCTTGT+GGG - tig0019271:125560-125579 Msa1372190:intron 35.0%
TGAGTAATGAAACTCTTGTG+GGG - tig0019271:125561-125580 Msa1372190:intron 35.0%
! TTACCACTAGTTTCATCAAC+TGG + tig0019271:125686-125705 None:intergenic 35.0%
!! AGTTGATGAAACTAGTGGTA+AGG - tig0019271:125685-125704 Msa1372190:intron 35.0%
AAAAAGAAGTTGACACGTCA+CGG - tig0019271:125732-125751 Msa1372190:intron 35.0%
ACTTTCGCAATTTCTGTAAC+CGG + tig0019271:125896-125915 None:intergenic 35.0%
GTTACAGAAATTGCGAAAGT+GGG - tig0019271:125896-125915 Msa1372190:intron 35.0%
TTACAGAAATTGCGAAAGTG+GGG - tig0019271:125897-125916 Msa1372190:intron 35.0%
TCACCCACTTCATATTCATT+TGG - tig0019271:125961-125980 Msa1372190:intron 35.0%
CACCCACTTCATATTCATTT+GGG - tig0019271:125962-125981 Msa1372190:intron 35.0%
!!! GTTTAAGGTTTTGGATCAGA+CGG - tig0019271:125988-126007 Msa1372190:intron 35.0%
AAGGTTCCTGATTATGAGAA+AGG - tig0019271:126106-126125 Msa1372190:intron 35.0%
AGGTTCCTGATTATGAGAAA+GGG - tig0019271:126107-126126 Msa1372190:intron 35.0%
! AATGTGTTTAAGATGAGACC+TGG - tig0019271:126136-126155 Msa1372190:intron 35.0%
! ATGTGTTTAAGATGAGACCT+GGG - tig0019271:126137-126156 Msa1372190:intron 35.0%
ACAATCTTTGTAACAAACCC+AGG + tig0019271:126157-126176 None:intergenic 35.0%
ATACATACCAATGCAACGTA+TGG - tig0019271:126193-126212 Msa1372190:intron 35.0%
TACATACCAATGCAACGTAT+GGG - tig0019271:126194-126213 Msa1372190:intron 35.0%
CTTCACTTGATCATCTTCAA+GGG + tig0019271:126385-126404 None:intergenic 35.0%
!!! GTATAAATGCATGTTTTGGC+TGG + tig0019271:126470-126489 None:intergenic 35.0%
! GCACGTATAAATGCATGTTT+TGG + tig0019271:126474-126493 None:intergenic 35.0%
! GCTACTTTCTTGTAAACACT+CGG - tig0019271:126597-126616 Msa1372190:intron 35.0%
TGATTCTGCAATCTTCAGAA+GGG - tig0019271:126882-126901 Msa1372190:CDS 35.0%
TGAATGAGAGCAAATTTGTG+AGG + tig0019271:126921-126940 None:intergenic 35.0%
!! TTTGCTCTCATTCACTTTTC+TGG - tig0019271:126927-126946 Msa1372190:five_prime_UTR 35.0%
ATTCTAAACACCATTCGTCA+AGG - tig0019271:126950-126969 Msa1372190:five_prime_UTR 35.0%
TTCTAAACACCATTCGTCAA+GGG - tig0019271:126951-126970 Msa1372190:five_prime_UTR 35.0%
TGTTGGGGATTTAGTAAGTT+TGG - tig0019271:127070-127089 Msa1372190:five_prime_UTR 35.0%
ATCGCTACCTTATTGTAAGG+TGG + tig0019271:122221-122240 None:intergenic 40.0%
ACCTTACAATAAGGTAGCGA+TGG - tig0019271:122220-122239 Msa1372190:three_prime_UTR 40.0%
TCCATCGCTACCTTATTGTA+AGG + tig0019271:122224-122243 None:intergenic 40.0%
AGACTTTGGGCATATTAGGA+AGG + tig0019271:122376-122395 None:intergenic 40.0%
CCATAGACTTTGGGCATATT+AGG + tig0019271:122380-122399 None:intergenic 40.0%
CCTAATATGCCCAAAGTCTA+TGG - tig0019271:122377-122396 Msa1372190:three_prime_UTR 40.0%
ACCTTGTAGCCATAGACTTT+GGG + tig0019271:122389-122408 None:intergenic 40.0%
AACCTTGTAGCCATAGACTT+TGG + tig0019271:122390-122409 None:intergenic 40.0%
TATGGCTACAAGGTTGTAGA+TGG - tig0019271:122395-122414 Msa1372190:three_prime_UTR 40.0%
TTCTCTTGGGGCATAAGTTA+AGG + tig0019271:122849-122868 None:intergenic 40.0%
ACCACATGATTGAGTCGTTA+GGG + tig0019271:123275-123294 None:intergenic 40.0%
AACCACATGATTGAGTCGTT+AGG + tig0019271:123276-123295 None:intergenic 40.0%
CCTCTATTGGAGATGCTTTA+AGG + tig0019271:123301-123320 None:intergenic 40.0%
! CCTTAAAGCATCTCCAATAG+AGG - tig0019271:123298-123317 Msa1372190:CDS 40.0%
GTTAAGTAAGGACCCTCTAT+TGG + tig0019271:123314-123333 None:intergenic 40.0%
TAGAGGGTCCTTACTTAACA+AGG - tig0019271:123315-123334 Msa1372190:CDS 40.0%
GAAAAATTGAGTCCCCGTTA+AGG - tig0019271:123371-123390 Msa1372190:CDS 40.0%
ATAGTTGTCCGTTCCTTAAC+GGG + tig0019271:123387-123406 None:intergenic 40.0%
TTAGTTACTCAGGAGAGAGA+GGG + tig0019271:123417-123436 None:intergenic 40.0%
TCTCTCTCCTGAGTAACTAA+CGG - tig0019271:123417-123436 Msa1372190:CDS 40.0%
AATAAGTGATGTGTCACGTG+GGG - tig0019271:123674-123693 Msa1372190:CDS 40.0%
CCTAACAAGGACTCCTTAAA+TGG + tig0019271:123701-123720 None:intergenic 40.0%
CCATTTAAGGAGTCCTTGTT+AGG - tig0019271:123698-123717 Msa1372190:CDS 40.0%
TCGTAAATCAATCATGGGCA+TGG + tig0019271:123757-123776 None:intergenic 40.0%
GTGGCTCGTAAATCAATCAT+GGG + tig0019271:123762-123781 None:intergenic 40.0%
AGTGGCTCGTAAATCAATCA+TGG + tig0019271:123763-123782 None:intergenic 40.0%
ACCCAAATGCCAGTTTGTAA+AGG - tig0019271:124008-124027 Msa1372190:CDS 40.0%
CCCTTTACAAACTGGCATTT+GGG + tig0019271:124012-124031 None:intergenic 40.0%
CCCAAATGCCAGTTTGTAAA+GGG - tig0019271:124009-124028 Msa1372190:CDS 40.0%
ACCCTTTACAAACTGGCATT+TGG + tig0019271:124013-124032 None:intergenic 40.0%
CATGGGAAAATGTTAGCTGT+AGG - tig0019271:124112-124131 Msa1372190:CDS 40.0%
! GCGTTTGGGCAATGAATTTT+AGG + tig0019271:124159-124178 None:intergenic 40.0%
CTTGGGTCATCAAAAAAGGA+AGG + tig0019271:124272-124291 None:intergenic 40.0%
!!! CTTCCTTTTTTGATGACCCA+AGG - tig0019271:124270-124289 Msa1372190:CDS 40.0%
GAACCTTGGGTCATCAAAAA+AGG + tig0019271:124276-124295 None:intergenic 40.0%
GATGACACTAAAAAGGTTGG+GGG + tig0019271:124571-124590 None:intergenic 40.0%
GGATGACACTAAAAAGGTTG+GGG + tig0019271:124572-124591 None:intergenic 40.0%
GTGGATGACACTAAAAAGGT+TGG + tig0019271:124574-124593 None:intergenic 40.0%
CTGAGTGGATGACACTAAAA+AGG + tig0019271:124578-124597 None:intergenic 40.0%
!! CTTTTTAGTGTCATCCACTC+AGG - tig0019271:124576-124595 Msa1372190:intron 40.0%
ATCACTATCGGTAAGTGTCA+AGG + tig0019271:124602-124621 None:intergenic 40.0%
! ATGGGAGTATGTGATTTGGA+GGG + tig0019271:124935-124954 None:intergenic 40.0%
TCCAAATCACATACTCCCAT+GGG - tig0019271:124935-124954 Msa1372190:intron 40.0%
TCAATGAAGTGGGGATAGTT+GGG + tig0019271:124962-124981 None:intergenic 40.0%
!!! GGTTGTTTTGGTCAATGAAG+TGG + tig0019271:124973-124992 None:intergenic 40.0%
!! GGGAATACCATTGGTTGTTT+TGG + tig0019271:124985-125004 None:intergenic 40.0%
AACTACAGTGGGAATACCAT+TGG + tig0019271:124994-125013 None:intergenic 40.0%
TTTGGATTTCCATCGCTTTC+GGG + tig0019271:125041-125060 None:intergenic 40.0%
GTTTGGATTTCCATCGCTTT+CGG + tig0019271:125042-125061 None:intergenic 40.0%
ACCGCTGGATTCAAAATCAA+GGG - tig0019271:125071-125090 Msa1372190:intron 40.0%
! TCCCTTGATTTTGAATCCAG+CGG + tig0019271:125075-125094 None:intergenic 40.0%
! AACCTTCTAGCTGGCTTAAT+TGG - tig0019271:125188-125207 Msa1372190:intron 40.0%
! ACCTTCTAGCTGGCTTAATT+GGG - tig0019271:125189-125208 Msa1372190:intron 40.0%
AAATCGAATTCGTTACCGTG+TGG + tig0019271:125260-125279 None:intergenic 40.0%
!! GATCGTAGCTTTAAAACGGA+CGG - tig0019271:125296-125315 Msa1372190:intron 40.0%
! AAATATTCTGGTTGCCACTG+TGG + tig0019271:125365-125384 None:intergenic 40.0%
! CAGTGGCAACCAGAATATTT+TGG - tig0019271:125365-125384 Msa1372190:intron 40.0%
GGTGACGCAATCATTGTAAA+CGG - tig0019271:125386-125405 Msa1372190:intron 40.0%
TAAAGCTTGGCCACGTTTAA+CGG - tig0019271:125409-125428 Msa1372190:intron 40.0%
TCATCAATGCAAGTAACGCT+AGG - tig0019271:125459-125478 Msa1372190:intron 40.0%
ATAACGTCTGTGATCTCAGA+TGG + tig0019271:125587-125606 None:intergenic 40.0%
AGTTTCATCAACTGGATCAC+CGG + tig0019271:125678-125697 None:intergenic 40.0%
!! GATCCAGTTGATGAAACTAG+TGG - tig0019271:125680-125699 Msa1372190:intron 40.0%
! GACGTGTCAACTTCTTTTTC+CGG + tig0019271:125731-125750 None:intergenic 40.0%
! GGATATTCCACAAGCTTTTC+CGG + tig0019271:125761-125780 None:intergenic 40.0%
GGTTACAGAAATTGCGAAAG+TGG - tig0019271:125895-125914 Msa1372190:intron 40.0%
TTCCTGATTATGAGAAAGGG+TGG - tig0019271:126110-126129 Msa1372190:intron 40.0%
TTCCACCCTTTCTCATAATC+AGG + tig0019271:126115-126134 None:intergenic 40.0%
ATCAAACCCATACGTTGCAT+TGG + tig0019271:126203-126222 None:intergenic 40.0%
GTATGGGTTTGATGCAACTA+AGG - tig0019271:126210-126229 Msa1372190:intron 40.0%
TTTGATGCAACTAAGGAGTC+TGG - tig0019271:126217-126236 Msa1372190:intron 40.0%
GCTTCACTTGATCATCTTCA+AGG + tig0019271:126386-126405 None:intergenic 40.0%
AGCAAAGCTACACAGTTCAT+AGG - tig0019271:126621-126640 Msa1372190:intron 40.0%
CTGATTCTGCAATCTTCAGA+AGG - tig0019271:126881-126900 Msa1372190:CDS 40.0%
TCTAAACACCATTCGTCAAG+GGG - tig0019271:126952-126971 Msa1372190:five_prime_UTR 40.0%
!! TTCTGATTCGGAGATTGCGT+GGG + tig0019271:122070-122089 None:intergenic 45.0%
!! ATTCTGATTCGGAGATTGCG+TGG + tig0019271:122071-122090 None:intergenic 45.0%
! GTTGCGTCGCTAAACCTTTT+TGG - tig0019271:122950-122969 Msa1372190:CDS 45.0%
TCCCTAACGACTCAATCATG+TGG - tig0019271:123271-123290 Msa1372190:CDS 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG + tig0019271:123326-123345 None:intergenic 45.0%
ATTGAGTCCCCGTTAAGGAA+CGG - tig0019271:123376-123395 Msa1372190:CDS 45.0%
TAGTTGTCCGTTCCTTAACG+GGG + tig0019271:123386-123405 None:intergenic 45.0%
GTTAGTTACTCAGGAGAGAG+AGG + tig0019271:123418-123437 None:intergenic 45.0%
CTCTCTCCTGAGTAACTAAC+GGG - tig0019271:123418-123437 Msa1372190:CDS 45.0%
ACTGGCATTTGGGTAGCTAA+AGG + tig0019271:124002-124021 None:intergenic 45.0%
! ACCTCTGGGCTACACATTTT+TGG - tig0019271:124183-124202 Msa1372190:CDS 45.0%
TCCAAAAATGTGTAGCCCAG+AGG + tig0019271:124187-124206 None:intergenic 45.0%
!! CGTGGTACTGATATCTCACA+TGG - tig0019271:124332-124351 Msa1372190:CDS 45.0%
TCACATGGCATCCAAGTCAT+TGG - tig0019271:124347-124366 Msa1372190:intron 45.0%
TTTCTCCACAGCCAATGACT+TGG + tig0019271:124361-124380 None:intergenic 45.0%
GTGTGTGGAGATTCCATTGA+GGG + tig0019271:124892-124911 None:intergenic 45.0%
! CATGGGAGTATGTGATTTGG+AGG + tig0019271:124936-124955 None:intergenic 45.0%
CTCCAAATCACATACTCCCA+TGG - tig0019271:124934-124953 Msa1372190:intron 45.0%
! TCCCATGGGAGTATGTGATT+TGG + tig0019271:124939-124958 None:intergenic 45.0%
GTCAATGAAGTGGGGATAGT+TGG + tig0019271:124963-124982 None:intergenic 45.0%
ATTCATGAACCCGAAAGCGA+TGG - tig0019271:125029-125048 Msa1372190:intron 45.0%
CCAGCGGTGAAAAATGAGTT+TGG + tig0019271:125059-125078 None:intergenic 45.0%
!! CCAAACTCATTTTTCACCGC+TGG - tig0019271:125056-125075 Msa1372190:intron 45.0%
CACCGCTGGATTCAAAATCA+AGG - tig0019271:125070-125089 Msa1372190:intron 45.0%
TCAAAATCAAGGGACCCACT+TGG - tig0019271:125081-125100 Msa1372190:intron 45.0%
TCCCAATTAAGCCAGCTAGA+AGG + tig0019271:125193-125212 None:intergenic 45.0%
TCTGTAACCGGTGCTTCATA+AGG + tig0019271:125884-125903 None:intergenic 45.0%
AATCACATACCACACCTCAC+TGG + tig0019271:125924-125943 None:intergenic 45.0%
TGCACGTGGGAAGAAAGTTA+AGG - tig0019271:126087-126106 Msa1372190:intron 45.0%
CTAAACACCATTCGTCAAGG+GGG - tig0019271:126953-126972 Msa1372190:five_prime_UTR 45.0%
TAAACACCATTCGTCAAGGG+GGG - tig0019271:126954-126973 Msa1372190:five_prime_UTR 45.0%
AAATTACCCCCCTTGACGAA+TGG + tig0019271:126963-126982 None:intergenic 45.0%
! CGTGTGTAGTGAAGTTGATC+AGG - tig0019271:126990-127009 Msa1372190:five_prime_UTR 45.0%
! GTGTAGTGAAGTTGATCAGG+TGG - tig0019271:126993-127012 Msa1372190:five_prime_UTR 45.0%
!! ATATAATTATGTTATAATTA+AGG + tig0019271:122886-122905 None:intergenic 5.0%
!!! AATTAAAATAAGTTTTTTTT+TGG - tig0019271:123031-123050 Msa1372190:CDS 5.0%
!!! ATATATATTATTTTTTTAGA+TGG - tig0019271:123175-123194 Msa1372190:CDS 5.0%
!!! TATTTTATTTTATTGAATTA+AGG + tig0019271:126722-126741 None:intergenic 5.0%
GCCCAAAGTCTATGGCTACA+AGG - tig0019271:122385-122404 Msa1372190:three_prime_UTR 50.0%
TCCAATGGAGGGTCTTAACG+GGG + tig0019271:123347-123366 None:intergenic 50.0%
CTCCAATGGAGGGTCTTAAC+GGG + tig0019271:123348-123367 None:intergenic 50.0%
CCTCCAATGGAGGGTCTTAA+CGG + tig0019271:123349-123368 None:intergenic 50.0%
ATGGGACCCGTTAGTTACTC+AGG + tig0019271:123427-123446 None:intergenic 50.0%
TGTCACGTGGGGTCCATTTA+AGG - tig0019271:123685-123704 Msa1372190:CDS 50.0%
TCAATCATGGGCATGGCATC+TGG + tig0019271:123750-123769 None:intergenic 50.0%
TGCCCAAACGCTTTAACCTC+TGG - tig0019271:124168-124187 Msa1372190:CDS 50.0%
GCCCAAACGCTTTAACCTCT+GGG - tig0019271:124169-124188 Msa1372190:CDS 50.0%
! GCCCAGAGGTTAAAGCGTTT+GGG + tig0019271:124173-124192 None:intergenic 50.0%
! AGCCCAGAGGTTAAAGCGTT+TGG + tig0019271:124174-124193 None:intergenic 50.0%
AGAGCTTGTGGTCCACTAGT+TGG + tig0019271:124488-124507 None:intergenic 50.0%
ATGCGTAAACGGTCGTTGGT+GGG + tig0019271:124821-124840 None:intergenic 50.0%
TATGCGTAAACGGTCGTTGG+TGG + tig0019271:124822-124841 None:intergenic 50.0%
CCAACGACCGTTTACGCATA+CGG - tig0019271:124822-124841 Msa1372190:intron 50.0%
CCATTGAGGGCTTCGATTGT+TGG + tig0019271:124879-124898 None:intergenic 50.0%
CCAACAATCGAAGCCCTCAA+TGG - tig0019271:124876-124895 Msa1372190:intron 50.0%
CGTGTGTGGAGATTCCATTG+AGG + tig0019271:124893-124912 None:intergenic 50.0%
! ATTTTGCCACGTCACGTGTG+TGG + tig0019271:124907-124926 None:intergenic 50.0%
CCGTGGAGATGAACTACAGT+GGG + tig0019271:125005-125024 None:intergenic 50.0%
CCCACTGTAGTTCATCTCCA+CGG - tig0019271:125002-125021 Msa1372190:intron 50.0%
ACCGTGGAGATGAACTACAG+TGG + tig0019271:125006-125025 None:intergenic 50.0%
ACTGTAGTTCATCTCCACGG+TGG - tig0019271:125005-125024 Msa1372190:intron 50.0%
ACCAGAGTCAACCTTCTAGC+TGG - tig0019271:125179-125198 Msa1372190:intron 50.0%
TGAAGGGTCGCGAATGATGT+AGG + tig0019271:125216-125235 None:intergenic 50.0%
ACCCTACGATTCATCCACAG+TGG - tig0019271:125348-125367 Msa1372190:intron 50.0%
GCCACTGTGGATGAATCGTA+GGG + tig0019271:125352-125371 None:intergenic 50.0%
TGCCACTGTGGATGAATCGT+AGG + tig0019271:125353-125372 None:intergenic 50.0%
GCAGCTTATCCTTACCCAAC+CGG - tig0019271:125656-125675 Msa1372190:intron 50.0%
! CATCAACTGGATCACCGGTT+GGG + tig0019271:125673-125692 None:intergenic 50.0%
TCATCAACTGGATCACCGGT+TGG + tig0019271:125674-125693 None:intergenic 50.0%
AGTTGACACGTCACGGATAC+CGG - tig0019271:125739-125758 Msa1372190:intron 50.0%
ACGGATACCGGAAAAGCTTG+TGG - tig0019271:125751-125770 Msa1372190:intron 50.0%
TATCAAGTGTGACGCGCACA+CGG - tig0019271:125792-125811 Msa1372190:intron 50.0%
CGCGAAACCTTATGAAGCAC+CGG - tig0019271:125874-125893 Msa1372190:intron 50.0%
GCGGAGATTCGCATGCAATG+AGG + tig0019271:122501-122520 None:intergenic 55.0%
TCCCCGTTAAGACCCTCCAT+TGG - tig0019271:123343-123362 Msa1372190:CDS 55.0%
CCGTTAAGACCCTCCATTGG+AGG - tig0019271:123346-123365 Msa1372190:CDS 55.0%
GGCGTGCACCCTTTACAAAC+TGG + tig0019271:124020-124039 None:intergenic 55.0%
! GGCATCCAAGTCATTGGCTG+TGG - tig0019271:124353-124372 Msa1372190:intron 55.0%
GGTAAGTGTCAAGGCCTGAG+TGG + tig0019271:124593-124612 None:intergenic 55.0%
! TCGTTGGTGGGAGATCTCTG+TGG + tig0019271:124809-124828 None:intergenic 55.0%
CCGTATGCGTAAACGGTCGT+TGG + tig0019271:124825-124844 None:intergenic 55.0%
AGGGCTTCGATTGTTGGACC+AGG + tig0019271:124873-124892 None:intergenic 55.0%
GAATCTCCACACACGTGACG+TGG - tig0019271:124898-124917 Msa1372190:intron 55.0%
TGGGGATAGTTGGGTCCCAT+GGG + tig0019271:124953-124972 None:intergenic 55.0%
CGGGTTCATGAATTCCACCG+TGG + tig0019271:125022-125041 None:intergenic 55.0%
! GCCAGCTAGAAGGTTGACTC+TGG + tig0019271:125183-125202 None:intergenic 55.0%
CGACGTCGTACCGTTAAACG+TGG + tig0019271:125422-125441 None:intergenic 55.0%
! ACTGGATCACCGGTTGGGTA+AGG + tig0019271:125668-125687 None:intergenic 55.0%
!!! GGTTTTGGATCAGACGGAGC+TGG - tig0019271:125994-126013 Msa1372190:intron 55.0%
! TGATGCTGTGAAGTGCCACG+TGG - tig0019271:126057-126076 Msa1372190:intron 55.0%
ACGTGGATGAGCATGCACGT+GGG - tig0019271:126074-126093 Msa1372190:intron 55.0%
TGGAGGGTCTTAACGGGGAG+TGG + tig0019271:123342-123361 None:intergenic 60.0%
GTGGGGATAGTTGGGTCCCA+TGG + tig0019271:124954-124973 None:intergenic 60.0%
TGCGAAAGTGGGGTCCAGTG+AGG - tig0019271:125907-125926 Msa1372190:intron 60.0%
AAGTGGGGTCCAGTGAGGTG+TGG - tig0019271:125912-125931 Msa1372190:intron 60.0%
CACGTGCATGCTCATCCACG+TGG + tig0019271:126075-126094 None:intergenic 60.0%
CACGTGGATGAGCATGCACG+TGG - tig0019271:126073-126092 Msa1372190:intron 60.0%
Chromosome Type Strat End Strand Name
tig0019271 gene 122063 127093 122063 ID=Msa1372190;Name=Msa1372190
tig0019271 mRNA 122063 127093 122063 ID=Msa1372190-mRNA-1;Parent=Msa1372190;Name=Msa1372190-mRNA-1;_AED=0.02;_eAED=0.02;_QI=176|1|1|1|0.66|0.5|4|566|579
tig0019271 exon 122063 122593 122063 ID=Msa1372190-mRNA-1:exon:2618;Parent=Msa1372190-mRNA-1
tig0019271 exon 122719 122807 122719 ID=Msa1372190-mRNA-1:exon:2617;Parent=Msa1372190-mRNA-1
tig0019271 exon 122898 124355 122898 ID=Msa1372190-mRNA-1:exon:2616;Parent=Msa1372190-mRNA-1
tig0019271 exon 126690 127093 126690 ID=Msa1372190-mRNA-1:exon:2615;Parent=Msa1372190-mRNA-1
tig0019271 five_prime_UTR 126918 127093 126918 ID=Msa1372190-mRNA-1:five_prime_utr;Parent=Msa1372190-mRNA-1
tig0019271 CDS 126690 126917 126690 ID=Msa1372190-mRNA-1:cds;Parent=Msa1372190-mRNA-1
tig0019271 CDS 122898 124355 122898 ID=Msa1372190-mRNA-1:cds;Parent=Msa1372190-mRNA-1
tig0019271 CDS 122754 122807 122754 ID=Msa1372190-mRNA-1:cds;Parent=Msa1372190-mRNA-1
tig0019271 three_prime_UTR 122719 122753 122719 ID=Msa1372190-mRNA-1:three_prime_utr;Parent=Msa1372190-mRNA-1
tig0019271 three_prime_UTR 122063 122593 122063 ID=Msa1372190-mRNA-1:three_prime_utr;Parent=Msa1372190-mRNA-1
Gene Sequence

>Msa1372190

ATGGAGAAAACAGTGCTCTTGAAGCTACTCACACTTTTAGCTCATTTACTATGTTTTGTTACCTTATCAACATCATCATCATCAGCTACAGTGAAACTCATAAATGCATCCAAGCTGAAGATGTTTGTTGATGACCTTCCTAATATGCCCAAAGTCTATGGCTACAAGGTTGTAGATGGCGTTCCCAAATCAAAGTCTCTCAAGATTGGCATGTTCAAGAAGAAATGGAAATTCCACAGAGATCTCCCACCAACGACCGTTTACGCATACGGATTAAACAAACACAAAGCAACAATTCCTGGTCCAACAATCGAAGCCCTCAATGGAATCTCCACACACGTGACGTGGCAAAATCATCTCCCTCCAAATCACATACTCCCATGGGACCCAACTATCCCCACTTCATTGACCAAAACAACCAATGGTATTCCCACTGTAGTTCATCTCCACGGTGGAATTCATGAACCCGAAAGCGATGGAAATCCAAACTCATTTTTCACCGCTGGATTCAAAATCAAGGGACCCACTTGGACAAAAAAGTCATATCACTATCCAAATAATCAACACCCTGGAAATTTATGGTATCATGATCATGCTATGGGTTTGACCAGAGTCAACCTTCTAGCTGGCTTAATTGGGACCTACATCATTCGCGACCCTTCAATCGAATCACCACTAAAATTACCACACGGTAACGAATTCGATTTACCGTTGATGTTATTCGATCGTAGCTTTAAAACGGACGGTTCGATTTTCATGAATTCAACTGGGAACAACCCTACGATTCATCCACAGTGGCAACCAGAATATTTTGGTGACGCAATCATTGTAAACGGTAAAGCTTGGCCACGTTTAACGGTACGACGTCGTAAGTATAGATTTCGTATCATCAATGCAAGTAACGCTAGGTTTTTTAGACTCTTTTTCAGCAATGGTTTAAGATTTGTACACGTGGCATCTGATTCTGCTTATATTGGGAAGCCAGTTGTGAGTAATGAAACTCTTGTGGGGCCATCTGAGATCACAGACGTTATTGTTGATTTTTCTGAATCAAAGAGTAATGCAGCTATTCTACGTAATGATGCAGCTTATCCTTACCCAACCGGTGATCCAGTTGATGAAACTAGTGGTAAGGTTATGAAATTTGTAATTTTACCGGAAAAAGAAGTTGACACGTCACGGATACCGGAAAAGCTTGTGGAATATCCGATTGTTGATTTATCAAGTGTGACGCGCACACGGTATATTGCTATGTATGAGTACACGAGTGATATTGATGAACCGATTCATTTGTATTTGAACGCGAAACCTTATGAAGCACCGGTTACAGAAATTGCGAAAGTGGGGTCCAGTGAGGTGTGGTATGTGATTAATTTGACTGATGATAATCACCCACTTCATATTCATTTGGGTTTGTTTAAGGTTTTGGATCAGACGGAGCTGGTGAAATCTGATGAATTTAAGGATTGTATGACGAAAAATAATGATGCTGTGAAGTGCCACGTGGATGAGCATGCACGTGGGAAGAAAGTTAAGGTTCCTGATTATGAGAAAGGGTGGAAGAATGTGTTTAAGATGAGACCTGGGTTTGTTACAAAGATTGTTGTTAGGTTTGCTTACATACATACCAATGCAACGTATGGGTTTGATGCAACTAAGGAGTCTGGTTACGTGTATCATTGTCATATATTGGACCATGAAGATAATGCTATGATGAGACCCTTGAAGATGATCAAGTGA
Protein sequence

>Msa1372190

MEKTVLLKLLTLLAHLLCFVTLSTSSSSATVKLINASKLKMFVDDLPNMPKVYGYKVVDGVPKSKSLKIGMFKKKWKFHRDLPPTTVYAYGLNKHKATIPGPTIEALNGISTHVTWQNHLPPNHILPWDPTIPTSLTKTTNGIPTVVHLHGGIHEPESDGNPNSFFTAGFKIKGPTWTKKSYHYPNNQHPGNLWYHDHAMGLTRVNLLAGLIGTYIIRDPSIESPLKLPHGNEFDLPLMLFDRSFKTDGSIFMNSTGNNPTIHPQWQPEYFGDAIIVNGKAWPRLTVRRRKYRFRIINASNARFFRLFFSNGLRFVHVASDSAYIGKPVVSNETLVGPSEITDVIVDFSESKSNAAILRNDAAYPYPTGDPVDETSGKVMKFVILPEKEVDTSRIPEKLVEYPIVDLSSVTRTRYIAMYEYTSDIDEPIHLYLNAKPYEAPVTEIAKVGSSEVWYVINLTDDNHPLHIHLGLFKVLDQTELVKSDEFKDCMTKNNDAVKCHVDEHARGKKVKVPDYEKGWKNVFKMRPGFVTKIVVRFAYIHTNATYGFDATKESGYVYHCHILDHEDNAMMRPLKMIK*