AlfalfaGEDB | Msa0258250

M. sativa cultivar zhongmu-4 / Msa0258250

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0258250	XP_013464928.1	98.707	464	6	0	1	464	1	464	0.0	949

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0258250	sp\|Q39183\|D6KL2_ARATH	48.671	489	206	9	5	459	85	562	2.86e-144	427

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0258250	A0A072VC20	98.707	464	6	0	1	464	1	464	0.0	949

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007440	Msa0258250	-0.807297	5.415356e-50	-8.615850e-47
Msa0010490	Msa0258250	-0.831574	1.545066e-55	-8.615850e-47
Msa0010500	Msa0258250	-0.825769	3.913056e-54	-8.615850e-47
Msa0033110	Msa0258250	-0.806503	7.968934e-50	-8.615850e-47
Msa0033260	Msa0258250	-0.803316	3.695494e-49	-8.615850e-47
Msa0037540	Msa0258250	0.853272	2.666486e-61	-8.615850e-47
Msa0037570	Msa0258250	0.808455	3.070571e-50	-8.615850e-47
Msa0037590	Msa0258250	0.854344	1.310521e-61	-8.615850e-47
Msa0054750	Msa0258250	-0.800848	1.188588e-48	-8.615850e-47
Msa0082680	Msa0258250	0.817218	3.696711e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0258250	MtrunA17_Chr2g0321101	98.707	464	6	0	1	464	1	464	0.0	949
Msa0258250	MtrunA17_Chr2g0290691	50.448	446	198	8	9	441	126	561	1.36e-142	421
Msa0258250	MtrunA17_Chr3g0080101	47.853	489	190	13	14	458	331	798	2.28e-136	411
Msa0258250	MtrunA17_Chr7g0250631	52.538	394	151	6	66	443	343	716	2.23e-135	407
Msa0258250	MtrunA17_Chr7g0227331	50.457	438	188	8	19	441	166	589	5.41e-135	402
Msa0258250	MtrunA17_Chr8g0335351	53.197	391	148	6	66	440	349	720	5.92e-134	404
Msa0258250	MtrunA17_Chr1g0179101	54.124	388	151	7	66	441	449	821	1.12e-133	406
Msa0258250	MtrunA17_Chr2g0309421	49.882	425	164	8	68	462	157	562	1.15e-133	397
Msa0258250	MtrunA17_Chr7g0266031	54.639	388	149	7	66	441	471	843	7.79e-133	404
Msa0258250	MtrunA17_Chr8g0356291	52.231	381	172	5	68	444	107	481	2.34e-131	390

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0258250	AT3G44610.1	63.235	476	138	7	1	464	1	451	0.0	578
Msa0258250	AT5G47750.1	48.671	489	206	9	5	459	85	562	2.90e-145	427
Msa0258250	AT3G27580.2	54.293	396	155	8	61	443	153	535	1.10e-141	418
Msa0258250	AT3G27580.1	54.293	396	155	8	61	443	153	535	1.10e-141	418
Msa0258250	AT1G79250.1	53.731	402	161	8	66	452	123	514	5.14e-139	410
Msa0258250	AT1G79250.3	53.731	402	161	8	66	452	123	514	5.14e-139	410
Msa0258250	AT1G79250.2	53.731	402	161	8	66	452	123	514	5.14e-139	410
Msa0258250	AT1G79250.4	53.731	402	161	8	66	452	123	514	5.14e-139	410
Msa0258250	AT3G12690.1	54.974	382	153	6	66	443	162	528	7.34e-139	411
Msa0258250	AT3G12690.3	54.974	382	153	6	66	443	162	528	7.34e-139	411

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Find 193 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGTCTTTCTCAAAA+CGG	0.428590	2_2:+54482356	None:intergenic
AAACCCGACCGCAGGGGAGC+CGG	0.488589	2_2:-54476762	Msa0258250:three_prime_UTR
AAAGATTCCGGCGATGTTTG+CGG	0.478593	2_2:-54481845	Msa0258250:CDS
AAATATCGTGGCTCGAGCTT+TGG	0.409780	2_2:-54477231	Msa0258250:CDS
AAATGGGTCTTTCTCAAAAC+GGG	0.365534	2_2:+54482357	None:intergenic
AAATTGTGAGTGTTCACTGT+GGG	0.628128	2_2:+54477547	None:intergenic
AAGAAACAAAACCAGTTTAA+TGG	0.274820	2_2:-54477449	Msa0258250:CDS
AAGAAGGCTAGGATCAATAA+TGG	0.382085	2_2:-54477135	Msa0258250:CDS
AAGGACCCAGCAAGAAGGCT+AGG	0.566657	2_2:-54477146	Msa0258250:CDS
AAGGAGAGAGTGAGAGTAAA+CGG	0.358530	2_2:+54482310	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGGGTCTTTCTCAAAA+CGG	+	chr2_2:54476582-54476601	None:intergenic	30.0%
GTGTTACAGTTGTTGAAAAT+GGG	+	chr2_2:54476597-54476616	None:intergenic	30.0%
AGTGTTACAGTTGTTGAAAA+TGG	+	chr2_2:54476598-54476617	None:intergenic	30.0%
AGTGTGTTATGATATAAGTG+GGG	+	chr2_2:54476668-54476687	None:intergenic	30.0%
GAGTGTGTTATGATATAAGT+GGG	+	chr2_2:54476669-54476688	None:intergenic	30.0%
TGAGTGTGTTATGATATAAG+TGG	+	chr2_2:54476670-54476689	None:intergenic	30.0%
GAGTGAAAATAGAAACTAAG+AGG	-	chr2_2:54477602-54477621	Msa0258250:CDS	30.0%
GTAGATTGAAAACGGAAAAT+GGG	+	chr2_2:54477784-54477803	None:intergenic	30.0%
GAGGAAAATAGTACTTGTTT+AGG	+	chr2_2:54479306-54479325	None:intergenic	30.0%
TATTTCAGTTGTTAGTTGGT+AGG	-	chr2_2:54479333-54479352	Msa0258250:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	54476547	54482410	54476547	ID=Msa0258250;Name=Msa0258250
chr2_2	mRNA	54476547	54482410	54476547	ID=Msa0258250-mRNA-1;Parent=Msa0258250;Name=Msa0258250-mRNA-1;_AED=0.00;_eAED=0.00;_QI=202\|1\|1\|1\|1\|1\|2\|433\|464
chr2_2	exon	54476547	54477784	54476547	ID=Msa0258250-mRNA-1:exon:16365;Parent=Msa0258250-mRNA-1
chr2_2	exon	54481619	54482410	54481619	ID=Msa0258250-mRNA-1:exon:16364;Parent=Msa0258250-mRNA-1
chr2_2	five_prime_UTR	54482209	54482410	54482209	ID=Msa0258250-mRNA-1:five_prime_utr;Parent=Msa0258250-mRNA-1
chr2_2	CDS	54481619	54482208	54481619	ID=Msa0258250-mRNA-1:cds;Parent=Msa0258250-mRNA-1
chr2_2	CDS	54476980	54477784	54476980	ID=Msa0258250-mRNA-1:cds;Parent=Msa0258250-mRNA-1
chr2_2	three_prime_UTR	54476547	54476979	54476547	ID=Msa0258250-mRNA-1:three_prime_utr;Parent=Msa0258250-mRNA-1

Gene Sequence

>Msa0258250

ATGGACCCGTGGCTCGACGATCTAACCGACGACCTCCAGAGCCTAAGCTTCGCCTCCACAACAACCACCACTGTCACCACCGCCGACATCAAACGCAGCACAAGCTTCAGTTCATCCTCAACCTCTGCTCATCTCTCCGGTCGATCCCTTCCCTTCCCTCCTCCTCCTCCAACCACCACCAAACATCACGCTCCTTCCTCCGACCCACGCTGGTCCGCCATTCACCGGATCCAATCCGAATCCCCTTCTCGTCGCATCCTCCCCTCCGACCTCCGCTTCTCCCGCCGTCTCGGCTCCGGCGACATCAGCTCTGTCTACCTCGCTGAACTCAACGATGATGGAAAGATTCCGGCGATGTTTGCGGCGAAAGTGATGGATAAGAAGGAGCTTGTTAGTAGGAGTAAGGAAGGAAGAGCGAAGACGGAGAGAGAAATACTTGAATCTCTTGATCATCCTTTTTTGCCTACTCTTTATGCTACCATTGATGCTGCGAAATGGCTCTGTCTTTTGACGGAGTTTTGTCCTGGCGGTGATCTTCACGTTCTCCGGCAACGGCAGCAAAACAAACGGTTCAATGAATCCGCCGTCAGATTCTATGCATCAGAAGTGTTGATGGCACTTGAATACCTTCACATGTTGGGAATAGTGTACCGTGATCTGAAGCCTGAGAATGTATTAGTTCGATCAGATGGCCATATAATGCTCACAGACTTTGACCTCTCATTAAAATGTGATGATAGTTCCACACCAGCTCAGATAATAATCTCCAATCAAAACTCTCCTCAAGTAGCCCCACCAAAAAATCCCCACAGTGAACACTCACAATTTGCCTCATCTTCGTGCATAATACCCAACTGTATAGTCCCAGCAGTGTCTTGTTTCCAACCAAAACGCAAAAGAAAGAAGAAACAAAACCAGTTTAATGGGCCTGAGTTTGTTGCTGAGCCCATTGATGTTAGGTCCATGTCATTTGTTGGGACCCACGAATACTTAGCTCCTGAAATAGTGTCTGGTGAGGGACATGGTAGTGCTGTGGATTGGTGGACCTTAGGGATATTTATATTCGAATTATTTTATGGTGTCACACCTTTTAGAGGCTTGGATAATGAATTAACTCTAGCAAATATCGTGGCTCGAGCTTTGGAGTTCCCAAAGGAACCCACCGTGCCAGCCACGGCAAAAGATCTTATCTTACAGTTATTGGTTAAGGACCCAGCAAGAAGGCTAGGATCAATAATGGGGGCTTCTGCAATCAAACACCACTCATTTTTTCAAGGTGTGAATTGGGCTTTGTTAAGGTGTACAACTCCCCCTTATGTTCCACCACCTTATACTAAAGACAAAGAAGATGTTTCTGATGATAGTTGTCCACAAACTCCTGTTGATTATTATTGA

Protein sequence

>Msa0258250

MDPWLDDLTDDLQSLSFASTTTTTVTTADIKRSTSFSSSSTSAHLSGRSLPFPPPPPTTTKHHAPSSDPRWSAIHRIQSESPSRRILPSDLRFSRRLGSGDISSVYLAELNDDGKIPAMFAAKVMDKKELVSRSKEGRAKTEREILESLDHPFLPTLYATIDAAKWLCLLTEFCPGGDLHVLRQRQQNKRFNESAVRFYASEVLMALEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDDSSTPAQIIISNQNSPQVAPPKNPHSEHSQFASSSCIIPNCIVPAVSCFQPKRKRKKKQNQFNGPEFVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELFYGVTPFRGLDNELTLANIVARALEFPKEPTVPATAKDLILQLLVKDPARRLGSIMGASAIKHHSFFQGVNWALLRCTTPPYVPPPYTKDKEDVSDDSCPQTPVDYY*