Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259800 | XP_024633303.1 | 99.552 | 446 | 2 | 0 | 1 | 446 | 1 | 446 | 0.0 | 929 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259800 | sp|O80996|BRIZ2_ARATH | 65.238 | 420 | 129 | 4 | 25 | 428 | 20 | 438 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259800 | A0A396JH02 | 99.552 | 446 | 2 | 0 | 1 | 446 | 1 | 446 | 0.0 | 929 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026630 | Msa0259800 | 0.811512 | 6.745049e-51 | -8.615850e-47 |
| Msa0043980 | Msa0259800 | 0.812438 | 4.239740e-51 | -8.615850e-47 |
| Msa0071250 | Msa0259800 | 0.812312 | 4.516967e-51 | -8.615850e-47 |
| Msa0090550 | Msa0259800 | 0.822294 | 2.557840e-53 | -8.615850e-47 |
| Msa0117520 | Msa0259800 | 0.832448 | 9.398252e-56 | -8.615850e-47 |
| Msa0138020 | Msa0259800 | 0.829138 | 6.086182e-55 | -8.615850e-47 |
| Msa0144530 | Msa0259800 | 0.813186 | 2.907206e-51 | -8.615850e-47 |
| Msa0148080 | Msa0259800 | 0.820139 | 8.029528e-53 | -8.615850e-47 |
| Msa0160960 | Msa0259800 | 0.811733 | 6.040237e-51 | -8.615850e-47 |
| Msa0218370 | Msa0259800 | 0.800806 | 1.212757e-48 | -8.615850e-47 |
| Msa0233370 | Msa0259800 | 0.803028 | 4.237324e-49 | -8.615850e-47 |
| Msa0241140 | Msa0259800 | 0.828167 | 1.044859e-54 | -8.615850e-47 |
| Msa0259800 | Msa0269560 | 0.811399 | 7.139353e-51 | -8.615850e-47 |
| Msa0259800 | Msa0295460 | -0.814685 | 1.358581e-51 | -8.615850e-47 |
| Msa0259800 | Msa0305410 | 0.849337 | 3.449031e-60 | -8.615850e-47 |
| Msa0259800 | Msa0388730 | 0.811691 | 6.168180e-51 | -8.615850e-47 |
| Msa0259800 | Msa0414140 | 0.800785 | 1.224499e-48 | -8.615850e-47 |
| Msa0259800 | Msa0427580 | 0.802537 | 5.351834e-49 | -8.615850e-47 |
| Msa0259800 | Msa0455760 | 0.828798 | 7.357125e-55 | -8.615850e-47 |
| Msa0259800 | Msa0481280 | 0.812924 | 3.318674e-51 | -8.615850e-47 |
| Msa0259800 | Msa0518170 | 0.807148 | 5.822513e-50 | -8.615850e-47 |
| Msa0259800 | Msa0604290 | 0.803551 | 3.302669e-49 | -8.615850e-47 |
| Msa0259800 | Msa0610130 | 0.808165 | 3.541430e-50 | -8.615850e-47 |
| Msa0259800 | Msa0610180 | 0.813575 | 2.388078e-51 | -8.615850e-47 |
| Msa0259800 | Msa0685090 | 0.806525 | 7.886480e-50 | -8.615850e-47 |
| Msa0259800 | Msa0703910 | 0.802250 | 6.134130e-49 | -8.615850e-47 |
| Msa0259800 | Msa0705990 | 0.809594 | 1.751362e-50 | -8.615850e-47 |
| Msa0259800 | Msa0711150 | 0.814437 | 1.541215e-51 | -8.615850e-47 |
| Msa0259800 | Msa0766760 | 0.802736 | 4.868770e-49 | -8.615850e-47 |
| Msa0259800 | Msa0809940 | 0.801095 | 1.058197e-48 | -8.615850e-47 |
| Msa0259800 | Msa0831850 | 0.800188 | 1.620070e-48 | -8.615850e-47 |
| Msa0259800 | Msa0844110 | 0.801102 | 1.055124e-48 | -8.615850e-47 |
| Msa0259800 | Msa0863720 | 0.807831 | 4.171759e-50 | -8.615850e-47 |
| Msa0259800 | Msa0894710 | 0.804015 | 2.645970e-49 | -8.615850e-47 |
| Msa0259800 | Msa0909110 | 0.807094 | 5.978283e-50 | -8.615850e-47 |
| Msa0259800 | Msa0960390 | 0.803628 | 3.183755e-49 | -8.615850e-47 |
| Msa0259800 | Msa1014730 | 0.804071 | 2.575348e-49 | -8.615850e-47 |
| Msa0259800 | Msa1062040 | 0.800767 | 1.235095e-48 | -8.615850e-47 |
| Msa0259800 | Msa1063420 | 0.804452 | 2.145678e-49 | -8.615850e-47 |
| Msa0259800 | Msa1071320 | 0.804620 | 1.978964e-49 | -8.615850e-47 |
| Msa0259800 | Msa1107200 | 0.803520 | 3.352504e-49 | -8.615850e-47 |
| Msa0259800 | Msa1122150 | 0.809551 | 1.789171e-50 | -8.615850e-47 |
| Msa0259800 | Msa1144040 | 0.812126 | 4.960440e-51 | -8.615850e-47 |
| Msa0259800 | Msa1158390 | 0.809658 | 1.697379e-50 | -8.615850e-47 |
| Msa0259800 | Msa1181250 | 0.817604 | 3.024831e-52 | -8.615850e-47 |
| Msa0259800 | Msa1181330 | 0.825197 | 5.345440e-54 | -8.615850e-47 |
| Msa0259800 | Msa1221330 | 0.812717 | 3.684356e-51 | -8.615850e-47 |
| Msa0259800 | Msa1272010 | 0.801814 | 7.537598e-49 | -8.615850e-47 |
| Msa0259800 | Msa1307180 | 0.811045 | 8.519707e-51 | -8.615850e-47 |
| Msa0259800 | Msa1312520 | 0.806144 | 9.485115e-50 | -8.615850e-47 |
| Msa0259800 | Msa1316360 | 0.819697 | 1.013414e-52 | -8.615850e-47 |
| Msa0259800 | Msa1346840 | 0.802381 | 5.763500e-49 | -8.615850e-47 |
| Msa0259800 | Msa1355890 | 0.803084 | 4.127469e-49 | -8.615850e-47 |
| Msa0259800 | Msa1380220 | 0.800651 | 1.304312e-48 | -8.615850e-47 |
| Msa0259800 | Msa1419840 | 0.803615 | 3.202893e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259800 | MtrunA17_Chr2g0333591 | 99.552 | 446 | 2 | 0 | 1 | 446 | 1 | 446 | 0.0 | 929 |
| Msa0259800 | MtrunA17_Chr4g0064091 | 47.674 | 430 | 213 | 7 | 27 | 445 | 27 | 455 | 1.22e-139 | 409 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259800 | AT2G26000.3 | 65.238 | 420 | 129 | 4 | 25 | 428 | 20 | 438 | 0.0 | 589 |
| Msa0259800 | AT2G26000.2 | 65.238 | 420 | 129 | 4 | 25 | 428 | 20 | 438 | 0.0 | 589 |
| Msa0259800 | AT2G26000.1 | 62.143 | 420 | 124 | 5 | 25 | 428 | 20 | 420 | 0.0 | 553 |
| Msa0259800 | AT2G42160.1 | 43.584 | 452 | 240 | 5 | 4 | 443 | 11 | 459 | 1.30e-134 | 396 |
| Msa0259800 | AT2G42160.2 | 44.342 | 433 | 228 | 4 | 4 | 424 | 11 | 442 | 1.56e-132 | 390 |
| Msa0259800 | AT2G42160.3 | 44.643 | 392 | 204 | 4 | 4 | 383 | 11 | 401 | 9.37e-120 | 355 |
Find 128 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGCGAGTTTCTTCGATTCT+AGG | 0.180431 | 2_2:+57150491 | None:intergenic |
| TTGTTCTACTTGTTGTAATA+AGG | 0.203104 | 2_2:+57147988 | None:intergenic |
| ACGTTAGATGTGCAGTATAC+TGG | 0.232482 | 2_2:-57149792 | Msa0259800:CDS |
| CGTTTCTTTCCAGTGTATTA+TGG | 0.244965 | 2_2:+57148590 | None:intergenic |
| AACTAACTTCCCATCAGTTT+TGG | 0.267305 | 2_2:+57148485 | None:intergenic |
| GAAACCACTGGCGTGTGTTT+TGG | 0.269399 | 2_2:-57150340 | Msa0259800:CDS |
| TAACAAAGAGAAGAAGTTTC+TGG | 0.277286 | 2_2:-57147882 | Msa0259800:CDS |
| AACCTCATGGTTTGTCTTGA+GGG | 0.281710 | 2_2:-57147136 | Msa0259800:CDS |
| AGAGAAGGAGGGGTTTGTTC+GGG | 0.282903 | 2_2:+57150452 | None:intergenic |
| ACGCTTAGTTTCCACTTCTA+AGG | 0.286554 | 2_2:+57148554 | None:intergenic |
| ACAAGCGAAGGTTAAAAGTT+TGG | 0.292424 | 2_2:-57150642 | Msa0259800:five_prime_UTR |
| GGGGTATAATTGTTGGGGTA+TGG | 0.313413 | 2_2:+57146515 | None:intergenic |
| AAGAAAAGCATGGTAGAAAA+AGG | 0.322143 | 2_2:-57147013 | Msa0259800:three_prime_UTR |
| AAATGTTGTCTTCGAATTAG+AGG | 0.330215 | 2_2:-57146548 | Msa0259800:three_prime_UTR |
| CAAGCGAAGGTTAAAAGTTT+GGG | 0.334526 | 2_2:-57150641 | Msa0259800:five_prime_UTR |
| TCGTCTTGATTCAGATATAA+AGG | 0.340162 | 2_2:-57148621 | Msa0259800:intron |
| AAGTGGAAACTAAGCGTGTC+TGG | 0.346083 | 2_2:-57148548 | Msa0259800:CDS |
| GGTATAATTGTTGGGGTATG+GGG | 0.354031 | 2_2:+57146517 | None:intergenic |
| GACTTTGTTGGGAGTTCAAC+GGG | 0.365759 | 2_2:-57146977 | Msa0259800:three_prime_UTR |
| TGAAATGCGTATTGTTAGAA+TGG | 0.371128 | 2_2:-57150250 | Msa0259800:CDS |
| ATTGCTCCTGTATTTCGAAA+TGG | 0.378523 | 2_2:-57149146 | Msa0259800:CDS |
| AGTCAACTTGTAGCTCTTAC+TGG | 0.378889 | 2_2:-57147037 | Msa0259800:three_prime_UTR |
| GAGATGAACATGTTTATAAC+TGG | 0.378957 | 2_2:-57146591 | Msa0259800:three_prime_UTR |
| GGGTATAATTGTTGGGGTAT+GGG | 0.379430 | 2_2:+57146516 | None:intergenic |
| AGATTCAGTTTGTTCTTCTT+CGG | 0.382285 | 2_2:+57150556 | None:intergenic |
| GTCAAACCACTGAGAACCTT+TGG | 0.385240 | 2_2:-57148793 | Msa0259800:CDS |
| TCCGCATAAGTCATGTGATT+TGG | 0.386992 | 2_2:+57150312 | None:intergenic |
| CTCTTCAATCTCAAGTAACT+TGG | 0.391711 | 2_2:+57147582 | None:intergenic |
| TCATTTCATTAGACTTTGTT+GGG | 0.393538 | 2_2:-57146988 | Msa0259800:three_prime_UTR |
| TCTCAAACAGCATAAGATTC+AGG | 0.394917 | 2_2:-57147921 | Msa0259800:CDS |
| TGCAATGTACCAAGGCAAAC+TGG | 0.398866 | 2_2:+57149714 | None:intergenic |
| AAGAGAAGGAGGGGTTTGTT+CGG | 0.400079 | 2_2:+57150451 | None:intergenic |
| AGGGGTAGGGGTATAATTGT+TGG | 0.400803 | 2_2:+57146508 | None:intergenic |
| ATCATTTCATTAGACTTTGT+TGG | 0.402026 | 2_2:-57146989 | Msa0259800:three_prime_UTR |
| ACAAACCCCTCCTTCTCTTC+CGG | 0.410389 | 2_2:-57150447 | Msa0259800:intron |
| ATAGGTAAAGGGAAAGGCTT+TGG | 0.410410 | 2_2:-57146897 | Msa0259800:three_prime_UTR |
| CTTTAAAGCTGACTACTGAT+AGG | 0.411800 | 2_2:-57147332 | Msa0259800:CDS |
| ATCTGCCCATTTCGAAATAC+AGG | 0.412417 | 2_2:+57149140 | None:intergenic |
| TGTGTTATATGTGGGTTTGT+TGG | 0.419958 | 2_2:-57148767 | Msa0259800:CDS |
| CGCGAGTTTCTTCGATTCTA+GGG | 0.435733 | 2_2:+57150492 | None:intergenic |
| TAACCTCATGGTTTGTCTTG+AGG | 0.435978 | 2_2:-57147137 | Msa0259800:CDS |
| TTGCTCCTGTATTTCGAAAT+GGG | 0.440003 | 2_2:-57149145 | Msa0259800:CDS |
| CGTTAGATGTGCAGTATACT+GGG | 0.458930 | 2_2:-57149791 | Msa0259800:CDS |
| CTTTGGATATGTGTTATATG+TGG | 0.462563 | 2_2:-57148776 | Msa0259800:CDS |
| ATATGTGGGTTTGTTGGCTG+TGG | 0.470616 | 2_2:-57148761 | Msa0259800:CDS |
| TTTAGGAGCAGAAAAGAGAA+AGG | 0.479276 | 2_2:+57146775 | None:intergenic |
| CTTCTAAACAAGCACTGGTT+AGG | 0.481009 | 2_2:-57146747 | Msa0259800:three_prime_UTR |
| GGGGTAGGGGTATAATTGTT+GGG | 0.491440 | 2_2:+57146509 | None:intergenic |
| GGGTAGGGGTATAATTGTTG+GGG | 0.494342 | 2_2:+57146510 | None:intergenic |
| CATTTGCATTTGACAATGGC+GGG | 0.494770 | 2_2:+57147095 | None:intergenic |
| ATCATCTTCTAAACAAGCAC+TGG | 0.496367 | 2_2:-57146752 | Msa0259800:three_prime_UTR |
| TGTTGGGAGTTCAACGGGAA+AGG | 0.500766 | 2_2:-57146972 | Msa0259800:three_prime_UTR |
| TATAACTGGATCACAGAGTT+GGG | 0.500861 | 2_2:-57146577 | Msa0259800:three_prime_UTR |
| GTGGGTTTGTTGGCTGTGGA+AGG | 0.501678 | 2_2:-57148757 | Msa0259800:intron |
| CTTATTCAGTCCAAAACTGA+TGG | 0.502793 | 2_2:-57148495 | Msa0259800:CDS |
| CAGCTTGTTGTTGGCAATAG+CGG | 0.506033 | 2_2:+57148837 | None:intergenic |
| CCATTGTCAAATGCAAATGA+TGG | 0.510740 | 2_2:-57147091 | Msa0259800:CDS |
| TGTAAGTATAACAGTGGTGC+AGG | 0.518911 | 2_2:+57146720 | None:intergenic |
| CCATCATTTGCATTTGACAA+TGG | 0.524558 | 2_2:+57147091 | None:intergenic |
| AGAGAAGAAGTTTCTGGATG+AGG | 0.524969 | 2_2:-57147876 | Msa0259800:intron |
| CTGTTCAGTTGAAGTAGCAT+TGG | 0.526346 | 2_2:+57149746 | None:intergenic |
| TTGGAGGTTACCGGAAGAGA+AGG | 0.532174 | 2_2:+57150437 | None:intergenic |
| GCATTGCTATTCCTTAGAAG+TGG | 0.532695 | 2_2:-57148565 | Msa0259800:CDS |
| AACACTGTAACGATCTTCCA+TGG | 0.534895 | 2_2:+57150224 | None:intergenic |
| ATGGAAAGAATGATTGCATA+TGG | 0.537548 | 2_2:+57149167 | None:intergenic |
| AACACACCACTGCTAGTTCG+AGG | 0.539492 | 2_2:-57146925 | Msa0259800:three_prime_UTR |
| TTGTCTTGAGGGTGGGAAGA+CGG | 0.545167 | 2_2:-57147125 | Msa0259800:CDS |
| TCATGGTTTGTCTTGAGGGT+GGG | 0.549592 | 2_2:-57147132 | Msa0259800:CDS |
| GAGAAGGAGGGGTTTGTTCG+GGG | 0.551624 | 2_2:+57150453 | None:intergenic |
| AGAGGGACATGAACGAGGTA+AGG | 0.552203 | 2_2:-57146949 | Msa0259800:three_prime_UTR |
| ATTCGATGAACAAGATTCTA+CGG | 0.553091 | 2_2:-57150193 | Msa0259800:CDS |
| TTATAACTGGATCACAGAGT+TGG | 0.553754 | 2_2:-57146578 | Msa0259800:three_prime_UTR |
| GTCAACTTGTAGCTCTTACT+GGG | 0.556328 | 2_2:-57147036 | Msa0259800:three_prime_UTR |
| TTTAAAGCTGACTACTGATA+GGG | 0.560293 | 2_2:-57147331 | Msa0259800:CDS |
| CTCATGGTTTGTCTTGAGGG+TGG | 0.560470 | 2_2:-57147133 | Msa0259800:CDS |
| GGTAACGGACCTAGAAAAGC+AGG | 0.564937 | 2_2:-57147310 | Msa0259800:intron |
| TCATTTGCATTTGACAATGG+CGG | 0.564960 | 2_2:+57147094 | None:intergenic |
| TTTGGATATGTGTTATATGT+GGG | 0.567381 | 2_2:-57148775 | Msa0259800:CDS |
| GAGGTTACCGGAAGAGAAGG+AGG | 0.567771 | 2_2:+57150440 | None:intergenic |
| GAGTTCAACGGGAAAGGAGA+GGG | 0.569890 | 2_2:-57146966 | Msa0259800:three_prime_UTR |
| AGTGGAAACTAAGCGTGTCT+GGG | 0.576313 | 2_2:-57148547 | Msa0259800:CDS |
| CATGCAGACAGTGGCAGCTG+TGG | 0.578082 | 2_2:-57148441 | Msa0259800:CDS |
| AGACTTTGTTGGGAGTTCAA+CGG | 0.578095 | 2_2:-57146978 | Msa0259800:three_prime_UTR |
| GACAGCCTTCTGAACTGCTA+CGG | 0.578151 | 2_2:+57147946 | None:intergenic |
| CCTACATGTCCAGTTTGCCT+TGG | 0.578352 | 2_2:-57149723 | Msa0259800:intron |
| TATTGTTAGAATGGAATCCA+TGG | 0.580258 | 2_2:-57150241 | Msa0259800:CDS |
| ATTTCGAAATACAGGAGCAA+TGG | 0.582318 | 2_2:+57149148 | None:intergenic |
| AATTTCCGTAGCAGTTCAGA+AGG | 0.584911 | 2_2:-57147951 | Msa0259800:CDS |
| GCTCGCAAACAAACAAGGAA+TGG | 0.585157 | 2_2:-57146847 | Msa0259800:three_prime_UTR |
| TTAGGTTGGACGGAAACCAC+TGG | 0.586248 | 2_2:-57150352 | Msa0259800:intron |
| ATTAAGTATAGCCTCTCTCA+TGG | 0.586613 | 2_2:+57148410 | None:intergenic |
| AAAATGCTCGCAAACAAACA+AGG | 0.588289 | 2_2:-57146852 | Msa0259800:three_prime_UTR |
| ACTTAATAGTAAAGTTGAAG+CGG | 0.592740 | 2_2:-57148394 | Msa0259800:intron |
| TGTACAGCTTAGTAACCTCA+TGG | 0.595808 | 2_2:-57147149 | Msa0259800:intron |
| ACGTGAAGTTTGACAAGCGA+AGG | 0.597960 | 2_2:-57150654 | Msa0259800:five_prime_UTR |
| GTTTATACAAACTAAACTGA+CGG | 0.600733 | 2_2:-57146696 | Msa0259800:three_prime_UTR |
| GGAGTTCAACGGGAAAGGAG+AGG | 0.603421 | 2_2:-57146967 | Msa0259800:three_prime_UTR |
| TCAGTTGAAGTAGCATTGGA+TGG | 0.603843 | 2_2:+57149750 | None:intergenic |
| AGGTTACCGGAAGAGAAGGA+GGG | 0.603965 | 2_2:+57150441 | None:intergenic |
| TGGAGATAATGCCATGAGAG+AGG | 0.611254 | 2_2:-57148421 | Msa0259800:CDS |
| CACATATAACACATATCCAA+AGG | 0.611792 | 2_2:+57148777 | None:intergenic |
| ACACACCACTGCTAGTTCGA+GGG | 0.618812 | 2_2:-57146924 | Msa0259800:three_prime_UTR |
| CTTGATTCAGATATAAAGGA+GGG | 0.619034 | 2_2:-57148617 | Msa0259800:intron |
| ATACAAACTAAACTGACGGA+TGG | 0.619568 | 2_2:-57146692 | Msa0259800:three_prime_UTR |
| CCAAGGCAAACTGGACATGT+AGG | 0.620789 | 2_2:+57149723 | None:intergenic |
| TTATTCAGTCCAAAACTGAT+GGG | 0.621299 | 2_2:-57148494 | Msa0259800:CDS |
| AAGCGTGTCTGGGATTATGT+CGG | 0.621807 | 2_2:-57148537 | Msa0259800:CDS |
| CACTGTGTGCATGCAGACAG+TGG | 0.626099 | 2_2:-57148450 | Msa0259800:CDS |
| GAGGGCATGCCATAATACAC+TGG | 0.629668 | 2_2:-57148599 | Msa0259800:CDS |
| CAAGTAGAACAAGAAACTGA+AGG | 0.630137 | 2_2:-57147977 | Msa0259800:CDS |
| GCTTTCTATACTCATTACAA+TGG | 0.633984 | 2_2:-57150168 | Msa0259800:CDS |
| CGATTAGATCAAGACACGAG+TGG | 0.641720 | 2_2:-57149201 | Msa0259800:CDS |
| TCTTACTGGGAAGAAAAGCA+TGG | 0.643513 | 2_2:-57147023 | Msa0259800:three_prime_UTR |
| GCTGACTACTGATAGGGTAA+CGG | 0.644609 | 2_2:-57147325 | Msa0259800:CDS |
| TTGAGCGCAGCGTAGCGATG+TGG | 0.649278 | 2_2:-57150598 | Msa0259800:exon |
| TCTTGATTCAGATATAAAGG+AGG | 0.653143 | 2_2:-57148618 | Msa0259800:intron |
| ACCAAATCACATGACTTATG+CGG | 0.656198 | 2_2:-57150313 | Msa0259800:CDS |
| GGTTACCGGAAGAGAAGGAG+GGG | 0.664900 | 2_2:+57150442 | None:intergenic |
| CATCTAACGTGAAAACAACA+CGG | 0.674739 | 2_2:+57149805 | None:intergenic |
| GTTCGGGGAAGACATGCATG+AGG | 0.679806 | 2_2:+57150468 | None:intergenic |
| TAAACTTGTAAGTATAACAG+TGG | 0.681001 | 2_2:+57146714 | None:intergenic |
| ACTCCCAAAACACACGCCAG+TGG | 0.685338 | 2_2:+57150336 | None:intergenic |
| ACATATCCAAAGGTTCTCAG+TGG | 0.687079 | 2_2:+57148787 | None:intergenic |
| AAAGGAGAGGGACATGAACG+AGG | 0.695456 | 2_2:-57146954 | Msa0259800:three_prime_UTR |
| CCTAGAATCGAAGAAACTCG+CGG | 0.716697 | 2_2:-57150491 | Msa0259800:CDS |
| AGTTACTTGAGATTGAAGAG+AGG | 0.724626 | 2_2:-57147579 | Msa0259800:intron |
| TAAGAGCTACAAGTTGACTG+AGG | 0.728746 | 2_2:+57147041 | None:intergenic |
| CACCCTCAAGACAAACCATG+AGG | 0.740508 | 2_2:+57147134 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATACTACAATTAAAAAAA+GGG | + | chr2_2:57149161-57149180 | None:intergenic | 10.0% |
| !! | AAAATACTACAATTAAAAAA+AGG | + | chr2_2:57149162-57149181 | None:intergenic | 10.0% |
| !!! | ATTTTTTGTTTTTGTGAATT+AGG | - | chr2_2:57146804-57146823 | Msa0259800:three_prime_UTR | 15.0% |
| !! | AATGAAAGAATTTAACAAAA+GGG | + | chr2_2:57148464-57148483 | None:intergenic | 15.0% |
| !!! | TTTTCTCTTTTAATTGTATT+TGG | - | chr2_2:57148499-57148518 | Msa0259800:CDS | 15.0% |
| !!! | TTGATGTATCTTTTTTTTTT+TGG | - | chr2_2:57148844-57148863 | Msa0259800:CDS | 15.0% |
| !!! | GATATACTACTTTTTTTTAA+TGG | + | chr2_2:57149472-57149491 | None:intergenic | 15.0% |
| !!! | TATAAATACTATTTTGAGAA+CGG | + | chr2_2:57149632-57149651 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTATCAAGAAACA+AGG | - | chr2_2:57150359-57150378 | Msa0259800:intron | 15.0% |
| !!! | TTTTTTTTATCAAGAAACAA+GGG | - | chr2_2:57150360-57150379 | Msa0259800:intron | 15.0% |
| !! | AGGCAAAAAAAAAAAAACAT+GGG | + | chr2_2:57147191-57147210 | None:intergenic | 20.0% |
| !! | TAGGCAAAAAAAAAAAAACA+TGG | + | chr2_2:57147192-57147211 | None:intergenic | 20.0% |
| !! | ATAAACTACATTACATTAGA+AGG | + | chr2_2:57147527-57147546 | None:intergenic | 20.0% |
| !!! | AGTATTGTTATTATTGTTGT+TGG | - | chr2_2:57147816-57147835 | Msa0259800:intron | 20.0% |
| !!! | GTATTGTTATTATTGTTGTT+GGG | - | chr2_2:57147817-57147836 | Msa0259800:intron | 20.0% |
| !!! | TATTGTTATTATTGTTGTTG+GGG | - | chr2_2:57147818-57147837 | Msa0259800:intron | 20.0% |
| !! | CAATGAAAGAATTTAACAAA+AGG | + | chr2_2:57148465-57148484 | None:intergenic | 20.0% |
| !! | ACAATTAAAAGAGAAAAGAA+AGG | + | chr2_2:57148496-57148515 | None:intergenic | 20.0% |
| !!! | TATCTTTTTTTTTTTGGTAG+TGG | - | chr2_2:57148850-57148869 | Msa0259800:intron | 20.0% |
| !! | ATTAATAGTAGTATATCACA+AGG | - | chr2_2:57149436-57149455 | Msa0259800:intron | 20.0% |
| !! | AAAAAAAGTAGTATATCACA+AGG | - | chr2_2:57149475-57149494 | Msa0259800:intron | 20.0% |
| !!! | CTTTTTACATTTAGTTTCAT+GGG | + | chr2_2:57149670-57149689 | None:intergenic | 20.0% |
| !!! | ACTTTTTACATTTAGTTTCA+TGG | + | chr2_2:57149671-57149690 | None:intergenic | 20.0% |
| !! | TTAGTATGAATATTCTTGAA+CGG | + | chr2_2:57149971-57149990 | None:intergenic | 20.0% |
| !! | AACAGAAAAAAAAATTCAAG+TGG | + | chr2_2:57150528-57150547 | None:intergenic | 20.0% |
| ! | AAATTGAAATTGAAGATTGG+AGG | + | chr2_2:57146756-57146775 | None:intergenic | 25.0% |
| ! | GGAAAATTGAAATTGAAGAT+TGG | + | chr2_2:57146759-57146778 | None:intergenic | 25.0% |
| ! | AAAGAAGAAGAAGATTGAAT+TGG | + | chr2_2:57146780-57146799 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGTGAATTAGGT+TGG | - | chr2_2:57146808-57146827 | Msa0259800:three_prime_UTR | 25.0% |
| !! | TTTTTCCCTATAACTACTTT+TGG | - | chr2_2:57147716-57147735 | Msa0259800:intron | 25.0% |
| ! | ATTCTCCAAAAGTAGTTATA+GGG | + | chr2_2:57147724-57147743 | None:intergenic | 25.0% |
| ! | AATTCTCCAAAAGTAGTTAT+AGG | + | chr2_2:57147725-57147744 | None:intergenic | 25.0% |
| ! | ATGAGAAGATGATGTTATAT+AGG | - | chr2_2:57148106-57148125 | Msa0259800:intron | 25.0% |
| ! | TGAGAAGATGATGTTATATA+GGG | - | chr2_2:57148107-57148126 | Msa0259800:intron | 25.0% |
| !! | TTCTTTTTGAATCAGTCTAT+TGG | - | chr2_2:57148267-57148286 | Msa0259800:intron | 25.0% |
| ! | TTTGGATATGTGTTATATGT+GGG | - | chr2_2:57148399-57148418 | Msa0259800:CDS | 25.0% |
| ! | AAGAATTTAACAAAAGGGTT+GGG | + | chr2_2:57148459-57148478 | None:intergenic | 25.0% |
| ! | AAAGAATTTAACAAAAGGGT+TGG | + | chr2_2:57148460-57148479 | None:intergenic | 25.0% |
| ! | ACTTAATAGTAAAGTTGAAG+CGG | - | chr2_2:57148780-57148799 | Msa0259800:CDS | 25.0% |
| ! | ACAATGCATAAAAATATGCA+AGG | + | chr2_2:57148895-57148914 | None:intergenic | 25.0% |
| ! | TGACAATCTGTAAAAGAAAA+TGG | + | chr2_2:57149013-57149032 | None:intergenic | 25.0% |
| !!! | TTGTTCTACTTGTTGTAATA+AGG | + | chr2_2:57149189-57149208 | None:intergenic | 25.0% |
| !! | TATTCTTTTTGACAAAGACA+TGG | + | chr2_2:57149381-57149400 | None:intergenic | 25.0% |
| ! | AATAATTATAGCCATGTCAT+AGG | - | chr2_2:57149400-57149419 | Msa0259800:intron | 25.0% |
| !!! | TTCTTTCGTATTTTTAATCC+TGG | - | chr2_2:57149906-57149925 | Msa0259800:intron | 25.0% |
| ! | ATCATTTCATTAGACTTTGT+TGG | - | chr2_2:57150185-57150204 | Msa0259800:CDS | 25.0% |
| ! | TCATTTCATTAGACTTTGTT+GGG | - | chr2_2:57150186-57150205 | Msa0259800:CDS | 25.0% |
| !! | CTTGTTTAGAAGATGATTTT+AGG | + | chr2_2:57150419-57150438 | None:intergenic | 25.0% |
| ! | TAAACTTGTAAGTATAACAG+TGG | + | chr2_2:57150463-57150482 | None:intergenic | 25.0% |
| ! | GTTTATACAAACTAAACTGA+CGG | - | chr2_2:57150478-57150497 | Msa0259800:CDS | 25.0% |
| !! | ATTCGAAGACAACATTTTAT+GGG | + | chr2_2:57150623-57150642 | None:intergenic | 25.0% |
| !! | AATTCGAAGACAACATTTTA+TGG | + | chr2_2:57150624-57150643 | None:intergenic | 25.0% |
| ! | AGATTCAGTTTGTTCTTCTT+CGG | + | chr2_2:57146621-57146640 | None:intergenic | 30.0% |
| ! | TCTCTTTTCAATTTCTCTTC+TGG | - | chr2_2:57146656-57146675 | Msa0259800:three_prime_UTR | 30.0% |
| !!! | TTTTTGTGAATTAGGTTGGA+CGG | - | chr2_2:57146812-57146831 | Msa0259800:three_prime_UTR | 30.0% |
| TGAAATGCGTATTGTTAGAA+TGG | - | chr2_2:57146924-57146943 | Msa0259800:three_prime_UTR | 30.0% | |
| TATTGTTAGAATGGAATCCA+TGG | - | chr2_2:57146933-57146952 | Msa0259800:three_prime_UTR | 30.0% | |
| ATTCGATGAACAAGATTCTA+CGG | - | chr2_2:57146981-57147000 | Msa0259800:three_prime_UTR | 30.0% | |
| GCTTTCTATACTCATTACAA+TGG | - | chr2_2:57147006-57147025 | Msa0259800:three_prime_UTR | 30.0% | |
| ! | TTGAATGTCGTTGACTAATT+CGG | + | chr2_2:57147166-57147185 | None:intergenic | 30.0% |
| CACTCATGAAATTTGCAAAT+AGG | + | chr2_2:57147211-57147230 | None:intergenic | 30.0% | |
| ATTCACCCCTAAAATTGTAA+GGG | + | chr2_2:57147245-57147264 | None:intergenic | 30.0% | |
| AATTCACCCCTAAAATTGTA+AGG | + | chr2_2:57147246-57147265 | None:intergenic | 30.0% | |
| !! | TTACAATTTTAGGGGTGAAT+TGG | - | chr2_2:57147245-57147264 | Msa0259800:intron | 30.0% |
| !! | GTGTTTGATTTGATGCATAT+AGG | - | chr2_2:57147336-57147355 | Msa0259800:CDS | 30.0% |
| ! | ATTTACCAAACTTGCTCTTA+AGG | - | chr2_2:57147746-57147765 | Msa0259800:intron | 30.0% |
| ! | TATGATTTGTGTTGCATGTA+TGG | - | chr2_2:57147852-57147871 | Msa0259800:intron | 30.0% |
| !! | TTCTGAAGTGAACTATTCAT+TGG | - | chr2_2:57147879-57147898 | Msa0259800:CDS | 30.0% |
| CATACACTAAGCGTTTAAAT+AGG | - | chr2_2:57147902-57147921 | Msa0259800:CDS | 30.0% | |
| ATGGAAAGAATGATTGCATA+TGG | + | chr2_2:57148010-57148029 | None:intergenic | 30.0% | |
| ATACCTGAAAATATAAGCAG+GGG | + | chr2_2:57148316-57148335 | None:intergenic | 30.0% | |
| CATACCTGAAAATATAAGCA+GGG | + | chr2_2:57148317-57148336 | None:intergenic | 30.0% | |
| !!! | TAGAATTTTCAGCTTGTTGT+TGG | + | chr2_2:57148349-57148368 | None:intergenic | 30.0% |
| CACATATAACACATATCCAA+AGG | + | chr2_2:57148400-57148419 | None:intergenic | 30.0% | |
| CTTTGGATATGTGTTATATG+TGG | - | chr2_2:57148398-57148417 | Msa0259800:CDS | 30.0% | |
| AGAATTTAACAAAAGGGTTG+GGG | + | chr2_2:57148458-57148477 | None:intergenic | 30.0% | |
| TCGTCTTGATTCAGATATAA+AGG | - | chr2_2:57148553-57148572 | Msa0259800:CDS | 30.0% | |
| TCTTGATTCAGATATAAAGG+AGG | - | chr2_2:57148556-57148575 | Msa0259800:CDS | 30.0% | |
| CTTGATTCAGATATAAAGGA+GGG | - | chr2_2:57148557-57148576 | Msa0259800:CDS | 30.0% | |
| ! | TTTTGGACTGAATAAGTCTA+TGG | + | chr2_2:57148675-57148694 | None:intergenic | 30.0% |
| TTATTCAGTCCAAAACTGAT+GGG | - | chr2_2:57148680-57148699 | Msa0259800:intron | 30.0% | |
| !!! | TTTTTTTTTTTGGTAGTGGC+CGG | - | chr2_2:57148854-57148873 | Msa0259800:intron | 30.0% |
| ACAACTCGAAAACCAAAAAT+TGG | - | chr2_2:57149058-57149077 | Msa0259800:intron | 30.0% | |
| GATATACTGCAAATGACAAA+TGG | + | chr2_2:57149094-57149113 | None:intergenic | 30.0% | |
| CTTTAATGTTTATACCAGAC+AGG | + | chr2_2:57149131-57149150 | None:intergenic | 30.0% | |
| TAACAAAGAGAAGAAGTTTC+TGG | - | chr2_2:57149292-57149311 | Msa0259800:intron | 30.0% | |
| ACAAAGACATGGTTATAACT+TGG | + | chr2_2:57149370-57149389 | None:intergenic | 30.0% | |
| !! | TGACAATCTTTTGAAAAACG+AGG | - | chr2_2:57149557-57149576 | Msa0259800:intron | 30.0% |
| AGCATATGACAATTACAAAG+TGG | + | chr2_2:57149734-57149753 | None:intergenic | 30.0% | |
| TTGCAATTACTTCAAGACAT+GGG | + | chr2_2:57149764-57149783 | None:intergenic | 30.0% | |
| TTTGCAATTACTTCAAGACA+TGG | + | chr2_2:57149765-57149784 | None:intergenic | 30.0% | |
| TCTTGAAGTAATTGCAAATC+TGG | - | chr2_2:57149767-57149786 | Msa0259800:CDS | 30.0% | |
| !!! | TACTTTTTTCAGGGAGAAAA+AGG | - | chr2_2:57149819-57149838 | Msa0259800:CDS | 30.0% |
| ! | TTTAAAGCTGACTACTGATA+GGG | - | chr2_2:57149843-57149862 | Msa0259800:intron | 30.0% |
| !! | TTCGTATTTTTAATCCTGGA+AGG | - | chr2_2:57149910-57149929 | Msa0259800:intron | 30.0% |
| !! | TCGTATTTTTAATCCTGGAA+GGG | - | chr2_2:57149911-57149930 | Msa0259800:intron | 30.0% |
| TTTGAGAACAAATCAAACAG+TGG | + | chr2_2:57150004-57150023 | None:intergenic | 30.0% | |
| ! | AAGAAAAGCATGGTAGAAAA+AGG | - | chr2_2:57150161-57150180 | Msa0259800:CDS | 30.0% |
| !!! | TTTGCGAGCATTTTAAAACA+AGG | + | chr2_2:57150316-57150335 | None:intergenic | 30.0% |
| GAGATGAACATGTTTATAAC+TGG | - | chr2_2:57150583-57150602 | Msa0259800:CDS | 30.0% | |
| AAATGTTGTCTTCGAATTAG+AGG | - | chr2_2:57150626-57150645 | Msa0259800:five_prime_UTR | 30.0% | |
| ACAAGCGAAGGTTAAAAGTT+TGG | - | chr2_2:57146532-57146551 | Msa0259800:three_prime_UTR | 35.0% | |
| CAAGCGAAGGTTAAAAGTTT+GGG | - | chr2_2:57146533-57146552 | Msa0259800:three_prime_UTR | 35.0% | |
| AATTGAAGATTGGAGGTTAC+CGG | + | chr2_2:57146749-57146768 | None:intergenic | 35.0% | |
| ACCAAATCACATGACTTATG+CGG | - | chr2_2:57146861-57146880 | Msa0259800:three_prime_UTR | 35.0% | |
| AGTCCTTACAAGTTAACAGA+TGG | - | chr2_2:57147139-57147158 | Msa0259800:CDS | 35.0% | |
| GATTTGATGCATATAGGTTG+AGG | - | chr2_2:57147342-57147361 | Msa0259800:CDS | 35.0% | |
| CATCTAACGTGAAAACAACA+CGG | + | chr2_2:57147372-57147391 | None:intergenic | 35.0% | |
| AAGGTAAGCTGTAGTACATA+AGG | + | chr2_2:57147508-57147527 | None:intergenic | 35.0% | |
| TTATAGATGCAAGCTGAGAA+AGG | - | chr2_2:57147543-57147562 | Msa0259800:intron | 35.0% | |
| TATAGATGCAAGCTGAGAAA+GGG | - | chr2_2:57147544-57147563 | Msa0259800:intron | 35.0% | |
| TGACAAGACAATGAGTTCTT+TGG | + | chr2_2:57147687-57147706 | None:intergenic | 35.0% | |
| TACTACCTTAAGAGCAAGTT+TGG | + | chr2_2:57147754-57147773 | None:intergenic | 35.0% | |
| ! | TGTTATTATTGTTGTTGGGG+TGG | - | chr2_2:57147821-57147840 | Msa0259800:intron | 35.0% |
| ATTTCGAAATACAGGAGCAA+TGG | + | chr2_2:57148029-57148048 | None:intergenic | 35.0% | |
| ATTGCTCCTGTATTTCGAAA+TGG | - | chr2_2:57148028-57148047 | Msa0259800:intron | 35.0% | |
| TTGCTCCTGTATTTCGAAAT+GGG | - | chr2_2:57148029-57148048 | Msa0259800:intron | 35.0% | |
| ATGCATACATGGAAAAACAG+AGG | + | chr2_2:57148088-57148107 | None:intergenic | 35.0% | |
| ATCATCTTCTCATGCATACA+TGG | + | chr2_2:57148099-57148118 | None:intergenic | 35.0% | |
| TGTTTATACTTACTGTCAGC+TGG | - | chr2_2:57148215-57148234 | Msa0259800:intron | 35.0% | |
| GTTTATACTTACTGTCAGCT+GGG | - | chr2_2:57148216-57148235 | Msa0259800:intron | 35.0% | |
| GCATACCTGAAAATATAAGC+AGG | + | chr2_2:57148318-57148337 | None:intergenic | 35.0% | |
| TGTGTTATATGTGGGTTTGT+TGG | - | chr2_2:57148407-57148426 | Msa0259800:CDS | 35.0% | |
| GAATTTAACAAAAGGGTTGG+GGG | + | chr2_2:57148457-57148476 | None:intergenic | 35.0% | |
| TTGCAACCATATGTATCATC+TGG | - | chr2_2:57148522-57148541 | Msa0259800:CDS | 35.0% | |
| AGAACTCCAGATGATACATA+TGG | + | chr2_2:57148531-57148550 | None:intergenic | 35.0% | |
| CGTTTCTTTCCAGTGTATTA+TGG | + | chr2_2:57148587-57148606 | None:intergenic | 35.0% | |
| CTTATTCAGTCCAAAACTGA+TGG | - | chr2_2:57148679-57148698 | Msa0259800:intron | 35.0% | |
| ! | AACTAACTTCCCATCAGTTT+TGG | + | chr2_2:57148692-57148711 | None:intergenic | 35.0% |
| ATTAAGTATAGCCTCTCTCA+TGG | + | chr2_2:57148767-57148786 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTTGGTAGTGGCC+GGG | - | chr2_2:57148855-57148874 | Msa0259800:intron | 35.0% |
| ATAAAAATATGCAAGGTCCG+GGG | + | chr2_2:57148888-57148907 | None:intergenic | 35.0% | |
| CATAAAAATATGCAAGGTCC+GGG | + | chr2_2:57148889-57148908 | None:intergenic | 35.0% | |
| GCATAAAAATATGCAAGGTC+CGG | + | chr2_2:57148890-57148909 | None:intergenic | 35.0% | |
| ! | GGAATACACTCACCAATTTT+TGG | + | chr2_2:57149073-57149092 | None:intergenic | 35.0% |
| TAATGTTTATACCAGACAGG+AGG | + | chr2_2:57149128-57149147 | None:intergenic | 35.0% | |
| CAAGTAGAACAAGAAACTGA+AGG | - | chr2_2:57149197-57149216 | Msa0259800:CDS | 35.0% | |
| TCTCAAACAGCATAAGATTC+AGG | - | chr2_2:57149253-57149272 | Msa0259800:intron | 35.0% | |
| GTAAGTTGTAAGTCATGCTT+GGG | - | chr2_2:57149320-57149339 | Msa0259800:intron | 35.0% | |
| TAAGTTGTAAGTCATGCTTG+GGG | - | chr2_2:57149321-57149340 | Msa0259800:intron | 35.0% | |
| GAACACAAAATCCTATGACA+TGG | + | chr2_2:57149414-57149433 | None:intergenic | 35.0% | |
| !! | TTTTGAAAAACGAGGAGATC+TGG | - | chr2_2:57149565-57149584 | Msa0259800:intron | 35.0% |
| CTCTTCAATCTCAAGTAACT+TGG | + | chr2_2:57149595-57149614 | None:intergenic | 35.0% | |
| AGTTACTTGAGATTGAAGAG+AGG | - | chr2_2:57149595-57149614 | Msa0259800:intron | 35.0% | |
| ! | ACATTTAGTTTCATGGGACA+AGG | + | chr2_2:57149664-57149683 | None:intergenic | 35.0% |
| !!! | ATGGGTGATGTACTTTTTTC+AGG | - | chr2_2:57149809-57149828 | Msa0259800:CDS | 35.0% |
| !!! | TGGGTGATGTACTTTTTTCA+GGG | - | chr2_2:57149810-57149829 | Msa0259800:CDS | 35.0% |
| !! | CTTTAAAGCTGACTACTGAT+AGG | - | chr2_2:57149842-57149861 | Msa0259800:intron | 35.0% |
| !! | CGTATTTTTAATCCTGGAAG+GGG | - | chr2_2:57149912-57149931 | Msa0259800:intron | 35.0% |
| GAACAAATCAAACAGTGGTT+TGG | + | chr2_2:57149999-57150018 | None:intergenic | 35.0% | |
| TCATTTGCATTTGACAATGG+CGG | + | chr2_2:57150083-57150102 | None:intergenic | 35.0% | |
| CCATCATTTGCATTTGACAA+TGG | + | chr2_2:57150086-57150105 | None:intergenic | 35.0% | |
| CCATTGTCAAATGCAAATGA+TGG | - | chr2_2:57150083-57150102 | Msa0259800:intron | 35.0% | |
| TTCGAGGGAAAAATAGGTAA+AGG | - | chr2_2:57150265-57150284 | Msa0259800:CDS | 35.0% | |
| TCGAGGGAAAAATAGGTAAA+GGG | - | chr2_2:57150266-57150285 | Msa0259800:CDS | 35.0% | |
| GGAAAAATAGGTAAAGGGAA+AGG | - | chr2_2:57150271-57150290 | Msa0259800:CDS | 35.0% | |
| AAAATGCTCGCAAACAAACA+AGG | - | chr2_2:57150322-57150341 | Msa0259800:CDS | 35.0% | |
| TTTAGGAGCAGAAAAGAGAA+AGG | + | chr2_2:57150402-57150421 | None:intergenic | 35.0% | |
| ATCATCTTCTAAACAAGCAC+TGG | - | chr2_2:57150422-57150441 | Msa0259800:intron | 35.0% | |
| ATACAAACTAAACTGACGGA+TGG | - | chr2_2:57150482-57150501 | Msa0259800:CDS | 35.0% | |
| TTATAACTGGATCACAGAGT+TGG | - | chr2_2:57150596-57150615 | Msa0259800:exon | 35.0% | |
| TATAACTGGATCACAGAGTT+GGG | - | chr2_2:57150597-57150616 | Msa0259800:exon | 35.0% | |
| TCCGCATAAGTCATGTGATT+TGG | + | chr2_2:57146865-57146884 | None:intergenic | 40.0% | |
| ! | GCGGATTTTTGTCAGTTTTG+TGG | - | chr2_2:57146880-57146899 | Msa0259800:three_prime_UTR | 40.0% |
| AACACTGTAACGATCTTCCA+TGG | + | chr2_2:57146953-57146972 | None:intergenic | 40.0% | |
| !! | GGTCCATCTGTTAACTTGTA+AGG | + | chr2_2:57147145-57147164 | None:intergenic | 40.0% |
| ! | TGTCCGACCCTTACAATTTT+AGG | - | chr2_2:57147235-57147254 | Msa0259800:intron | 40.0% |
| ! | GTCCGACCCTTACAATTTTA+GGG | - | chr2_2:57147236-57147255 | Msa0259800:intron | 40.0% |
| ! | TCCGACCCTTACAATTTTAG+GGG | - | chr2_2:57147237-57147256 | Msa0259800:intron | 40.0% |
| ACCCCTAAAATTGTAAGGGT+CGG | + | chr2_2:57147241-57147260 | None:intergenic | 40.0% | |
| ACGTTAGATGTGCAGTATAC+TGG | - | chr2_2:57147382-57147401 | Msa0259800:intron | 40.0% | |
| CGTTAGATGTGCAGTATACT+GGG | - | chr2_2:57147383-57147402 | Msa0259800:intron | 40.0% | |
| ! | TCAGTTGAAGTAGCATTGGA+TGG | + | chr2_2:57147427-57147446 | None:intergenic | 40.0% |
| CTGTTCAGTTGAAGTAGCAT+TGG | + | chr2_2:57147431-57147450 | None:intergenic | 40.0% | |
| ATCTGCCCATTTCGAAATAC+AGG | + | chr2_2:57148037-57148056 | None:intergenic | 40.0% | |
| GATTCTTCTTGTCCTGTAAG+TGG | - | chr2_2:57148054-57148073 | Msa0259800:intron | 40.0% | |
| TTACAGTCAGCTATTGCTCT+CGG | + | chr2_2:57148138-57148157 | None:intergenic | 40.0% | |
| TGTACTGTGTGAGCTACTAT+GGG | - | chr2_2:57148159-57148178 | Msa0259800:intron | 40.0% | |
| ! | AGTCCCCTGCTTATATTTTC+AGG | - | chr2_2:57148310-57148329 | Msa0259800:intron | 40.0% |
| ACATATCCAAAGGTTCTCAG+TGG | + | chr2_2:57148390-57148409 | None:intergenic | 40.0% | |
| ! | GCATTGCTATTCCTTAGAAG+TGG | - | chr2_2:57148609-57148628 | Msa0259800:CDS | 40.0% |
| ACGCTTAGTTTCCACTTCTA+AGG | + | chr2_2:57148623-57148642 | None:intergenic | 40.0% | |
| !!! | TTTTTTTTTGGTAGTGGCCG+GGG | - | chr2_2:57148856-57148875 | Msa0259800:intron | 40.0% |
| TTCCAAAATTTCCTCCTGTC+TGG | - | chr2_2:57149114-57149133 | Msa0259800:intron | 40.0% | |
| ! | TACCAGACAGGAGGAAATTT+TGG | + | chr2_2:57149119-57149138 | None:intergenic | 40.0% |
| AATTTCCGTAGCAGTTCAGA+AGG | - | chr2_2:57149223-57149242 | Msa0259800:intron | 40.0% | |
| ! | AGAGAAGAAGTTTCTGGATG+AGG | - | chr2_2:57149298-57149317 | Msa0259800:intron | 40.0% |
| GGTAAGTTGTAAGTCATGCT+TGG | - | chr2_2:57149319-57149338 | Msa0259800:intron | 40.0% | |
| TCCAGATGTTTGCAAACTGA+TGG | - | chr2_2:57149790-57149809 | Msa0259800:CDS | 40.0% | |
| CCAGATGTTTGCAAACTGAT+GGG | - | chr2_2:57149791-57149810 | Msa0259800:CDS | 40.0% | |
| !! | CAGTATTCACCTGCTTTTCT+AGG | + | chr2_2:57149876-57149895 | None:intergenic | 40.0% |
| TGTACAGCTTAGTAACCTCA+TGG | - | chr2_2:57150025-57150044 | Msa0259800:intron | 40.0% | |
| ! | TAACCTCATGGTTTGTCTTG+AGG | - | chr2_2:57150037-57150056 | Msa0259800:intron | 40.0% |
| ! | AACCTCATGGTTTGTCTTGA+GGG | - | chr2_2:57150038-57150057 | Msa0259800:intron | 40.0% |
| CATTTGCATTTGACAATGGC+GGG | + | chr2_2:57150082-57150101 | None:intergenic | 40.0% | |
| ! | TAAGAGCTACAAGTTGACTG+AGG | + | chr2_2:57150136-57150155 | None:intergenic | 40.0% |
| AGTCAACTTGTAGCTCTTAC+TGG | - | chr2_2:57150137-57150156 | Msa0259800:intron | 40.0% | |
| GTCAACTTGTAGCTCTTACT+GGG | - | chr2_2:57150138-57150157 | Msa0259800:intron | 40.0% | |
| TCTTACTGGGAAGAAAAGCA+TGG | - | chr2_2:57150151-57150170 | Msa0259800:CDS | 40.0% | |
| AGACTTTGTTGGGAGTTCAA+CGG | - | chr2_2:57150196-57150215 | Msa0259800:CDS | 40.0% | |
| TGCTAGTTCGAGGGAAAAAT+AGG | - | chr2_2:57150259-57150278 | Msa0259800:CDS | 40.0% | |
| ATAGGTAAAGGGAAAGGCTT+TGG | - | chr2_2:57150277-57150296 | Msa0259800:CDS | 40.0% | |
| !! | CTTCTAAACAAGCACTGGTT+AGG | - | chr2_2:57150427-57150446 | Msa0259800:intron | 40.0% |
| TGTAAGTATAACAGTGGTGC+AGG | + | chr2_2:57150457-57150476 | None:intergenic | 40.0% | |
| CGCGAGTTTCTTCGATTCTA+GGG | + | chr2_2:57146685-57146704 | None:intergenic | 45.0% | |
| CCTAGAATCGAAGAAACTCG+CGG | - | chr2_2:57146683-57146702 | Msa0259800:three_prime_UTR | 45.0% | |
| ! | AAGAGAAGGAGGGGTTTGTT+CGG | + | chr2_2:57146726-57146745 | None:intergenic | 45.0% |
| ! | AAACCACTGGCGTGTGTTTT+GGG | - | chr2_2:57146835-57146854 | Msa0259800:three_prime_UTR | 45.0% |
| ! | TCGACGTTTTTCGTCTCTAG+AGG | - | chr2_2:57147029-57147048 | Msa0259800:three_prime_UTR | 45.0% |
| TGCAATGTACCAAGGCAAAC+TGG | + | chr2_2:57147463-57147482 | None:intergenic | 45.0% | |
| AAGGGACATGCAATGTACCA+AGG | + | chr2_2:57147471-57147490 | None:intergenic | 45.0% | |
| !!! | ATGTCCCTTTTTTCCGCCTT+AGG | - | chr2_2:57147482-57147501 | Msa0259800:intron | 45.0% |
| AAGGCCTAAGGCGGAAAAAA+GGG | + | chr2_2:57147489-57147508 | None:intergenic | 45.0% | |
| TAAGGCCTAAGGCGGAAAAA+AGG | + | chr2_2:57147490-57147509 | None:intergenic | 45.0% | |
| GTAGTACATAAGGCCTAAGG+CGG | + | chr2_2:57147498-57147517 | None:intergenic | 45.0% | |
| GCTGTAGTACATAAGGCCTA+AGG | + | chr2_2:57147501-57147520 | None:intergenic | 45.0% | |
| CGATTAGATCAAGACACGAG+TGG | - | chr2_2:57147973-57147992 | Msa0259800:CDS | 45.0% | |
| TACAGTCAGCTATTGCTCTC+GGG | + | chr2_2:57148137-57148156 | None:intergenic | 45.0% | |
| CTGTACTGTGTGAGCTACTA+TGG | - | chr2_2:57148158-57148177 | Msa0259800:intron | 45.0% | |
| GTACTGTGTGAGCTACTATG+GGG | - | chr2_2:57148160-57148179 | Msa0259800:intron | 45.0% | |
| TGTGAGCTACTATGGGGATT+GGG | - | chr2_2:57148166-57148185 | Msa0259800:intron | 45.0% | |
| TACTGTCAGCTGGGATTTCT+TGG | - | chr2_2:57148225-57148244 | Msa0259800:intron | 45.0% | |
| !! | CAGCTTGTTGTTGGCAATAG+CGG | + | chr2_2:57148340-57148359 | None:intergenic | 45.0% |
| GTCAAACCACTGAGAACCTT+TGG | - | chr2_2:57148381-57148400 | Msa0259800:intron | 45.0% | |
| !! | ATATGTGGGTTTGTTGGCTG+TGG | - | chr2_2:57148413-57148432 | Msa0259800:CDS | 45.0% |
| AAGTGGAAACTAAGCGTGTC+TGG | - | chr2_2:57148626-57148645 | Msa0259800:intron | 45.0% | |
| AGTGGAAACTAAGCGTGTCT+GGG | - | chr2_2:57148627-57148646 | Msa0259800:intron | 45.0% | |
| ! | AAGCGTGTCTGGGATTATGT+CGG | - | chr2_2:57148637-57148656 | Msa0259800:intron | 45.0% |
| TGGAGATAATGCCATGAGAG+AGG | - | chr2_2:57148753-57148772 | Msa0259800:intron | 45.0% | |
| CCCATCAGTTTGCAAACATC+TGG | + | chr2_2:57149794-57149813 | None:intergenic | 45.0% | |
| GCTGACTACTGATAGGGTAA+CGG | - | chr2_2:57149849-57149868 | Msa0259800:intron | 45.0% | |
| ! | TCATGGTTTGTCTTGAGGGT+GGG | - | chr2_2:57150042-57150061 | Msa0259800:intron | 45.0% |
| GACTTTGTTGGGAGTTCAAC+GGG | - | chr2_2:57150197-57150216 | Msa0259800:CDS | 45.0% | |
| ! | TTTTTCCCTCGAACTAGCAG+TGG | + | chr2_2:57150258-57150277 | None:intergenic | 45.0% |
| GCTCGCAAACAAACAAGGAA+TGG | - | chr2_2:57150327-57150346 | Msa0259800:CDS | 45.0% | |
| !!! | TATTTATTTATTCTATTTTA+TGG | - | chr2_2:57147058-57147077 | Msa0259800:three_prime_UTR | 5.0% |
| CCGCGAGTTTCTTCGATTCT+AGG | + | chr2_2:57146686-57146705 | None:intergenic | 50.0% | |
| ! | AGAGAAGGAGGGGTTTGTTC+GGG | + | chr2_2:57146725-57146744 | None:intergenic | 50.0% |
| ACAAACCCCTCCTTCTCTTC+CGG | - | chr2_2:57146727-57146746 | Msa0259800:three_prime_UTR | 50.0% | |
| AGGTTACCGGAAGAGAAGGA+GGG | + | chr2_2:57146736-57146755 | None:intergenic | 50.0% | |
| TTGGAGGTTACCGGAAGAGA+AGG | + | chr2_2:57146740-57146759 | None:intergenic | 50.0% | |
| !! | TTAGGTTGGACGGAAACCAC+TGG | - | chr2_2:57146822-57146841 | Msa0259800:three_prime_UTR | 50.0% |
| ! | GAAACCACTGGCGTGTGTTT+TGG | - | chr2_2:57146834-57146853 | Msa0259800:three_prime_UTR | 50.0% |
| CCAAGGCAAACTGGACATGT+AGG | + | chr2_2:57147454-57147473 | None:intergenic | 50.0% | |
| CCTACATGTCCAGTTTGCCT+TGG | - | chr2_2:57147451-57147470 | Msa0259800:intron | 50.0% | |
| GTGTGAGCTACTATGGGGAT+TGG | - | chr2_2:57148165-57148184 | Msa0259800:intron | 50.0% | |
| GTGAGCTACTATGGGGATTG+GGG | - | chr2_2:57148167-57148186 | Msa0259800:intron | 50.0% | |
| TACTATGGGGATTGGGGTGT+CGG | - | chr2_2:57148173-57148192 | Msa0259800:intron | 50.0% | |
| ! | GAGGGCATGCCATAATACAC+TGG | - | chr2_2:57148575-57148594 | Msa0259800:CDS | 50.0% |
| GTGAGCTTAGCTCAGTTGGT+TGG | + | chr2_2:57148918-57148937 | None:intergenic | 50.0% | |
| GACAGCCTTCTGAACTGCTA+CGG | + | chr2_2:57149231-57149250 | None:intergenic | 50.0% | |
| !! | GGTAACGGACCTAGAAAAGC+AGG | - | chr2_2:57149864-57149883 | Msa0259800:intron | 50.0% |
| !!! | TCCTGGAAGGGGTTTTGTTG+CGG | - | chr2_2:57149923-57149942 | Msa0259800:intron | 50.0% |
| CACCCTCAAGACAAACCATG+AGG | + | chr2_2:57150043-57150062 | None:intergenic | 50.0% | |
| ! | CTCATGGTTTGTCTTGAGGG+TGG | - | chr2_2:57150041-57150060 | Msa0259800:intron | 50.0% |
| TTGTCTTGAGGGTGGGAAGA+CGG | - | chr2_2:57150049-57150068 | Msa0259800:intron | 50.0% | |
| TGTTGGGAGTTCAACGGGAA+AGG | - | chr2_2:57150202-57150221 | Msa0259800:CDS | 50.0% | |
| GAGTTCAACGGGAAAGGAGA+GGG | - | chr2_2:57150208-57150227 | Msa0259800:CDS | 50.0% | |
| AAAGGAGAGGGACATGAACG+AGG | - | chr2_2:57150220-57150239 | Msa0259800:CDS | 50.0% | |
| AGAGGGACATGAACGAGGTA+AGG | - | chr2_2:57150225-57150244 | Msa0259800:CDS | 50.0% | |
| AACACACCACTGCTAGTTCG+AGG | - | chr2_2:57150249-57150268 | Msa0259800:CDS | 50.0% | |
| ACACACCACTGCTAGTTCGA+GGG | - | chr2_2:57150250-57150269 | Msa0259800:CDS | 50.0% | |
| GTTCGGGGAAGACATGCATG+AGG | + | chr2_2:57146709-57146728 | None:intergenic | 55.0% | |
| ! | GAGAAGGAGGGGTTTGTTCG+GGG | + | chr2_2:57146724-57146743 | None:intergenic | 55.0% |
| GGTTACCGGAAGAGAAGGAG+GGG | + | chr2_2:57146735-57146754 | None:intergenic | 55.0% | |
| GAGGTTACCGGAAGAGAAGG+AGG | + | chr2_2:57146737-57146756 | None:intergenic | 55.0% | |
| ACTCCCAAAACACACGCCAG+TGG | + | chr2_2:57146841-57146860 | None:intergenic | 55.0% | |
| GAGGCAGCAGAACCACTTAC+AGG | + | chr2_2:57148069-57148088 | None:intergenic | 55.0% | |
| !! | GTGGGTTTGTTGGCTGTGGA+AGG | - | chr2_2:57148417-57148436 | Msa0259800:CDS | 55.0% |
| CACTGTGTGCATGCAGACAG+TGG | - | chr2_2:57148724-57148743 | Msa0259800:intron | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr2_2:57148922-57148941 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr2_2:57148919-57148938 | Msa0259800:intron | 55.0% | |
| !!! | CCTGGAAGGGGTTTTGTTGC+GGG | - | chr2_2:57149924-57149943 | Msa0259800:intron | 55.0% |
| !!! | CTGGAAGGGGTTTTGTTGCG+GGG | - | chr2_2:57149925-57149944 | Msa0259800:intron | 55.0% |
| GGAGTTCAACGGGAAAGGAG+AGG | - | chr2_2:57150207-57150226 | Msa0259800:CDS | 55.0% | |
| TTGAGCGCAGCGTAGCGATG+TGG | - | chr2_2:57146576-57146595 | Msa0259800:three_prime_UTR | 60.0% | |
| CATGCAGACAGTGGCAGCTG+TGG | - | chr2_2:57148733-57148752 | Msa0259800:intron | 60.0% | |
| AAGGTCCGGGGTTCAAACCC+CGG | + | chr2_2:57148876-57148895 | None:intergenic | 60.0% | |
| CCCGCAACAAAACCCCTTCC+AGG | + | chr2_2:57149927-57149946 | None:intergenic | 60.0% | |
| !!! | GGGTTTTGTTGCGGGGTGCA+GGG | - | chr2_2:57149932-57149951 | Msa0259800:intron | 60.0% |
| !!! | GGTTTTGTTGCGGGGTGCAG+GGG | - | chr2_2:57149933-57149952 | Msa0259800:intron | 60.0% |
| AGTGGCCGGGGTTTGAACCC+CGG | - | chr2_2:57148868-57148887 | Msa0259800:intron | 65.0% | |
| !!! | GGGGTTTTGTTGCGGGGTGC+AGG | - | chr2_2:57149931-57149950 | Msa0259800:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 57146523 | 57150673 | 57146523 | ID=Msa0259800;Name=Msa0259800 |
| chr2_2 | mRNA | 57146523 | 57150673 | 57146523 | ID=Msa0259800-mRNA-1;Parent=Msa0259800;Name=Msa0259800-mRNA-1;_AED=0.07;_eAED=0.07;_QI=70|1|1|1|1|1|11|555|446 |
| chr2_2 | exon | 57146523 | 57147164 | 57146523 | ID=Msa0259800-mRNA-1:exon:17338;Parent=Msa0259800-mRNA-1 |
| chr2_2 | exon | 57147311 | 57147365 | 57147311 | ID=Msa0259800-mRNA-1:exon:17337;Parent=Msa0259800-mRNA-1 |
| chr2_2 | exon | 57147580 | 57147644 | 57147580 | ID=Msa0259800-mRNA-1:exon:17336;Parent=Msa0259800-mRNA-1 |
| chr2_2 | exon | 57147877 | 57148020 | 57147877 | ID=Msa0259800-mRNA-1:exon:17335;Parent=Msa0259800-mRNA-1 |
| chr2_2 | exon | 57148117 | 57148170 | 57148117 | ID=Msa0259800-mRNA-1:exon:17334;Parent=Msa0259800-mRNA-1 |
| chr2_2 | exon | 57148395 | 57148629 | 57148395 | ID=Msa0259800-mRNA-1:exon:17333;Parent=Msa0259800-mRNA-1 |
| chr2_2 | exon | 57148758 | 57148864 | 57148758 | ID=Msa0259800-mRNA-1:exon:17332;Parent=Msa0259800-mRNA-1 |
| chr2_2 | exon | 57149128 | 57149225 | 57149128 | ID=Msa0259800-mRNA-1:exon:17331;Parent=Msa0259800-mRNA-1 |
| chr2_2 | exon | 57149724 | 57149838 | 57149724 | ID=Msa0259800-mRNA-1:exon:17330;Parent=Msa0259800-mRNA-1 |
| chr2_2 | exon | 57150146 | 57150370 | 57150146 | ID=Msa0259800-mRNA-1:exon:17329;Parent=Msa0259800-mRNA-1 |
| chr2_2 | exon | 57150448 | 57150673 | 57150448 | ID=Msa0259800-mRNA-1:exon:17328;Parent=Msa0259800-mRNA-1 |
| chr2_2 | five_prime_UTR | 57150604 | 57150673 | 57150604 | ID=Msa0259800-mRNA-1:five_prime_utr;Parent=Msa0259800-mRNA-1 |
| chr2_2 | CDS | 57150448 | 57150603 | 57150448 | ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1 |
| chr2_2 | CDS | 57150146 | 57150370 | 57150146 | ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1 |
| chr2_2 | CDS | 57149724 | 57149838 | 57149724 | ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1 |
| chr2_2 | CDS | 57149128 | 57149225 | 57149128 | ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1 |
| chr2_2 | CDS | 57148758 | 57148864 | 57148758 | ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1 |
| chr2_2 | CDS | 57148395 | 57148629 | 57148395 | ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1 |
| chr2_2 | CDS | 57148117 | 57148170 | 57148117 | ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1 |
| chr2_2 | CDS | 57147877 | 57148020 | 57147877 | ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1 |
| chr2_2 | CDS | 57147580 | 57147644 | 57147580 | ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1 |
| chr2_2 | CDS | 57147311 | 57147365 | 57147311 | ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1 |
| chr2_2 | CDS | 57147078 | 57147164 | 57147078 | ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1 |
| chr2_2 | three_prime_UTR | 57146523 | 57147077 | 57146523 | ID=Msa0259800-mRNA-1:three_prime_utr;Parent=Msa0259800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
