AlfalfaGEDB | Msa0259800

M. sativa cultivar zhongmu-4 / Msa0259800

KEGG: K10632
GO: GO:0000151 GO:0000165 GO:0003674 GO:0003824 GO:0004842 GO:0005048 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008139 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016310 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032991 GO:0033218 GO:0035556 GO:0036211 GO:0042277 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234
PFAM: PF07576.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259800	XP_024633303.1	99.552	446	2	0	1	446	1	446	0.0	929

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259800	sp\|O80996\|BRIZ2_ARATH	65.238	420	129	4	25	428	20	438	0.0	589

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259800	A0A396JH02	99.552	446	2	0	1	446	1	446	0.0	929

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026630	Msa0259800	0.811512	6.745049e-51	-8.615850e-47
Msa0043980	Msa0259800	0.812438	4.239740e-51	-8.615850e-47
Msa0071250	Msa0259800	0.812312	4.516967e-51	-8.615850e-47
Msa0090550	Msa0259800	0.822294	2.557840e-53	-8.615850e-47
Msa0117520	Msa0259800	0.832448	9.398252e-56	-8.615850e-47
Msa0138020	Msa0259800	0.829138	6.086182e-55	-8.615850e-47
Msa0144530	Msa0259800	0.813186	2.907206e-51	-8.615850e-47
Msa0148080	Msa0259800	0.820139	8.029528e-53	-8.615850e-47
Msa0160960	Msa0259800	0.811733	6.040237e-51	-8.615850e-47
Msa0218370	Msa0259800	0.800806	1.212757e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259800	MtrunA17_Chr2g0333591	99.552	446	2	0	1	446	1	446	0.0	929
Msa0259800	MtrunA17_Chr4g0064091	47.674	430	213	7	27	445	27	455	1.22e-139	409

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259800	AT2G26000.3	65.238	420	129	4	25	428	20	438	0.0	589
Msa0259800	AT2G26000.2	65.238	420	129	4	25	428	20	438	0.0	589
Msa0259800	AT2G26000.1	62.143	420	124	5	25	428	20	420	0.0	553
Msa0259800	AT2G42160.1	43.584	452	240	5	4	443	11	459	1.30e-134	396
Msa0259800	AT2G42160.2	44.342	433	228	4	4	424	11	442	1.56e-132	390
Msa0259800	AT2G42160.3	44.643	392	204	4	4	383	11	401	9.37e-120	355

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Find 128 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCTCGCAAACAAACA+AGG	0.588289	2_2:-57146852	Msa0259800:three_prime_UTR
AAAGGAGAGGGACATGAACG+AGG	0.695456	2_2:-57146954	Msa0259800:three_prime_UTR
AAATGTTGTCTTCGAATTAG+AGG	0.330215	2_2:-57146548	Msa0259800:three_prime_UTR
AACACACCACTGCTAGTTCG+AGG	0.539492	2_2:-57146925	Msa0259800:three_prime_UTR
AACACTGTAACGATCTTCCA+TGG	0.534895	2_2:+57150224	None:intergenic
AACCTCATGGTTTGTCTTGA+GGG	0.281710	2_2:-57147136	Msa0259800:CDS
AACTAACTTCCCATCAGTTT+TGG	0.267305	2_2:+57148485	None:intergenic
AAGAAAAGCATGGTAGAAAA+AGG	0.322143	2_2:-57147013	Msa0259800:three_prime_UTR
AAGAGAAGGAGGGGTTTGTT+CGG	0.400079	2_2:+57150451	None:intergenic
AAGCGTGTCTGGGATTATGT+CGG	0.621807	2_2:-57148537	Msa0259800:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAATGCGTATTGTTAGAA+TGG	-	chr2_2:57146924-57146943	Msa0259800:three_prime_UTR	30.0%
TATTGTTAGAATGGAATCCA+TGG	-	chr2_2:57146933-57146952	Msa0259800:three_prime_UTR	30.0%
ATTCGATGAACAAGATTCTA+CGG	-	chr2_2:57146981-57147000	Msa0259800:three_prime_UTR	30.0%
GCTTTCTATACTCATTACAA+TGG	-	chr2_2:57147006-57147025	Msa0259800:three_prime_UTR	30.0%
CACTCATGAAATTTGCAAAT+AGG	+	chr2_2:57147211-57147230	None:intergenic	30.0%
ATTCACCCCTAAAATTGTAA+GGG	+	chr2_2:57147245-57147264	None:intergenic	30.0%
AATTCACCCCTAAAATTGTA+AGG	+	chr2_2:57147246-57147265	None:intergenic	30.0%
CATACACTAAGCGTTTAAAT+AGG	-	chr2_2:57147902-57147921	Msa0259800:CDS	30.0%
ATGGAAAGAATGATTGCATA+TGG	+	chr2_2:57148010-57148029	None:intergenic	30.0%
ATACCTGAAAATATAAGCAG+GGG	+	chr2_2:57148316-57148335	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	57146523	57150673	57146523	ID=Msa0259800;Name=Msa0259800
chr2_2	mRNA	57146523	57150673	57146523	ID=Msa0259800-mRNA-1;Parent=Msa0259800;Name=Msa0259800-mRNA-1;_AED=0.07;_eAED=0.07;_QI=70\|1\|1\|1\|1\|1\|11\|555\|446
chr2_2	exon	57146523	57147164	57146523	ID=Msa0259800-mRNA-1:exon:17338;Parent=Msa0259800-mRNA-1
chr2_2	exon	57147311	57147365	57147311	ID=Msa0259800-mRNA-1:exon:17337;Parent=Msa0259800-mRNA-1
chr2_2	exon	57147580	57147644	57147580	ID=Msa0259800-mRNA-1:exon:17336;Parent=Msa0259800-mRNA-1
chr2_2	exon	57147877	57148020	57147877	ID=Msa0259800-mRNA-1:exon:17335;Parent=Msa0259800-mRNA-1
chr2_2	exon	57148117	57148170	57148117	ID=Msa0259800-mRNA-1:exon:17334;Parent=Msa0259800-mRNA-1
chr2_2	exon	57148395	57148629	57148395	ID=Msa0259800-mRNA-1:exon:17333;Parent=Msa0259800-mRNA-1
chr2_2	exon	57148758	57148864	57148758	ID=Msa0259800-mRNA-1:exon:17332;Parent=Msa0259800-mRNA-1
chr2_2	exon	57149128	57149225	57149128	ID=Msa0259800-mRNA-1:exon:17331;Parent=Msa0259800-mRNA-1
chr2_2	exon	57149724	57149838	57149724	ID=Msa0259800-mRNA-1:exon:17330;Parent=Msa0259800-mRNA-1
chr2_2	exon	57150146	57150370	57150146	ID=Msa0259800-mRNA-1:exon:17329;Parent=Msa0259800-mRNA-1
chr2_2	exon	57150448	57150673	57150448	ID=Msa0259800-mRNA-1:exon:17328;Parent=Msa0259800-mRNA-1
chr2_2	five_prime_UTR	57150604	57150673	57150604	ID=Msa0259800-mRNA-1:five_prime_utr;Parent=Msa0259800-mRNA-1
chr2_2	CDS	57150448	57150603	57150448	ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1
chr2_2	CDS	57150146	57150370	57150146	ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1
chr2_2	CDS	57149724	57149838	57149724	ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1
chr2_2	CDS	57149128	57149225	57149128	ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1
chr2_2	CDS	57148758	57148864	57148758	ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1
chr2_2	CDS	57148395	57148629	57148395	ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1
chr2_2	CDS	57148117	57148170	57148117	ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1
chr2_2	CDS	57147877	57148020	57147877	ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1
chr2_2	CDS	57147580	57147644	57147580	ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1
chr2_2	CDS	57147311	57147365	57147311	ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1
chr2_2	CDS	57147078	57147164	57147078	ID=Msa0259800-mRNA-1:cds;Parent=Msa0259800-mRNA-1
chr2_2	three_prime_UTR	57146523	57147077	57146523	ID=Msa0259800-mRNA-1:three_prime_utr;Parent=Msa0259800-mRNA-1

Gene Sequence

>Msa0259800

ATGTGGAGTTCAAGCAGAGTCGTCTCCGAAGAAGAACAAACTGAATCTTCTTCTTTCTCAACTTCTCTTTTCAATTTCTCTTCTGGTAACCCTAGAATCGAAGAAACTCGCGGCCTCATGCATGTCTTCCCCGAACAAACCCCTCCTTCTCTTCCGGTTGGACGGAAACCACTGGCGTGTGTTTTGGGAGTACCAAATCACATGACTTATGCGGATTTTTGTCAGTTTTGTGGTTCTTTTATTCAGCATATTCTTGAAATGCGTATTGTTAGAATGGAATCCATGGAAGATCGTTACAGTGTTTTGATTCGATTCGATGAACAAGATTCTACGGATGCTTTCTATACTCATTACAATGGTCGACGTTTTTCGTCTCTAGAGGTTGAGGTGTGCCGTGTTGTTTTCACGTTAGATGTGCAGTATACTGGGTCAATTGAACACGCACAACCATCCAATGCTACTTCAACTGAACAGCCTACATGTCCAGTTTGCCTTGAGCGATTAGATCAAGACACGAGTGGAATTCTTACAACCATATGCAATCATTCTTTCCATTGCTCCTGTATTTCGAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAACAACAAGCTGAAAATTCTATATGTTTCGTTTGTCAAACCACTGAGAACCTTTGGATATGTGTTATATGTGGGTTTGTTGGCTGTGGAAGATATAAAGGAGGGCATGCCATAATACACTGGAAAGAAACGCAGCATTGCTATTCCTTAGAAGTGGAAACTAAGCGTGTCTGGGATTATGTCGGAGACAACTATGTCCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTAGTTGAGCTGAACTCTCACTGTGTGCATGCAGACAGTGGCAGCTGTGGAGATAATGCCATGAGAGAGGCTATACTTAATAGTAAAGTTGAAGCGATTGTCAATGAATACAATGAATTGCTTGCTACACAACTCGAAAACCAAAAATTGTATTTTGAATCCTTATTACAACAAGTAGAACAAGAAACTGAAGGAAAAATTTCCGTAGCAGTTCAGAAGGCTGTCAGTCTCAAACAGCATAAGATTCAGGCGAAGATCGATCGATGTAACAAAGAGAAGAAGTTTCTGGATGAGCTTAATGACAATCTTTTGAAAAACGAGGAGATCTGGAAAGCCAAGTTACTTGAGATTGAAGAGAGGGAGAAAAAGGCTTTAAAGCTGACTACTGATAGGGTAACGGACCTAGAAAAGCAGCTTAGTAACCTCATGGTTTGTCTTGAGGGTGGGAAGACGGAAGAACACCCGCCATTGTCAAATGCAAATGATGGAACTGTCTCTTGA

Protein sequence

>Msa0259800

MWSSSRVVSEEEQTESSSFSTSLFNFSSGNPRIEETRGLMHVFPEQTPPSLPVGRKPLACVLGVPNHMTYADFCQFCGSFIQHILEMRIVRMESMEDRYSVLIRFDEQDSTDAFYTHYNGRRFSSLEVEVCRVVFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAENSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCVHADSGSCGDNAMREAILNSKVEAIVNEYNELLATQLENQKLYFESLLQQVEQETEGKISVAVQKAVSLKQHKIQAKIDRCNKEKKFLDELNDNLLKNEEIWKAKLLEIEEREKKALKLTTDRVTDLEKQLSNLMVCLEGGKTEEHPPLSNANDGTVS*