AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0296620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296620 MtrunA17_Chr2g0319291 79.508 122 2 1 9 107 1 122 1.46e-64 191
Msa0296620 MtrunA17_Chr4g0042051 72.826 92 25 0 16 107 31 122 2.17e-47 147
Msa0296620 MtrunA17_Chr2g0280411 61.053 95 37 0 11 105 25 119 5.02e-40 129
Msa0296620 MtrunA17_Chr7g0216481 45.570 79 43 0 20 98 51 129 2.88e-22 84.3
Msa0296620 MtrunA17_Chr5g0404831 41.860 86 50 0 20 105 33 118 8.04e-22 82.8
Msa0296620 MtrunA17_Chr8g0334481 43.038 79 45 0 20 98 51 129 1.92e-21 82.4
Msa0296620 MtrunA17_Chr7g0245141 40.217 92 54 1 16 106 44 135 2.71e-21 82.0
Msa0296620 MtrunA17_Chr1g0155721 40.698 86 51 0 20 105 31 116 1.19e-19 77.4
Msa0296620 MtrunA17_Chr3g0142051 43.038 79 45 0 20 98 31 109 4.99e-19 75.9
Msa0296620 MtrunA17_Chr8g0393201 35.443 79 51 0 20 98 252 330 9.54e-18 76.3
Msa0296620 MtrunA17_Chr5g0415771 39.362 94 56 1 6 99 31 123 4.23e-16 68.6
Msa0296620 MtrunA17_Chr5g0415761 38.554 83 51 0 17 99 42 124 7.44e-13 60.1
Msa0296620 MtrunA17_Chr5g0415741 37.349 83 52 0 17 99 40 122 2.70e-12 58.5
Msa0296620 MtrunA17_Chr4g0047431 32.967 91 61 0 17 107 21 111 4.40e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296620 AT1G11530.1 64.444 90 32 0 16 105 23 112 2.13e-42 135
Msa0296620 AT3G08710.2 45.977 87 47 0 20 106 48 134 1.57e-22 85.9
Msa0296620 AT3G08710.3 45.977 87 47 0 20 106 48 134 1.57e-22 85.9
Msa0296620 AT3G08710.1 45.977 87 47 0 20 106 48 134 1.57e-22 85.9
Msa0296620 AT3G51030.1 48.101 79 41 0 20 98 31 109 3.37e-22 84.0
Msa0296620 AT3G56420.1 43.038 79 45 0 20 98 65 143 2.98e-20 80.1
Msa0296620 AT3G56420.2 43.038 79 45 0 20 98 65 143 2.98e-20 80.1
Msa0296620 AT3G56420.3 43.038 79 45 0 20 98 65 143 2.98e-20 80.1
Msa0296620 AT1G45145.1 37.975 79 49 0 20 98 30 108 1.18e-19 77.8
Msa0296620 AT2G40790.2 41.772 79 46 0 20 98 65 143 1.44e-19 78.6
Msa0296620 AT2G40790.1 41.772 79 46 0 20 98 65 143 1.44e-19 78.6
Msa0296620 AT1G59730.1 34.694 98 63 1 2 99 29 125 1.05e-18 75.5
Msa0296620 AT1G19730.1 36.145 83 52 1 17 98 28 110 5.05e-18 73.6
Msa0296620 AT5G39950.1 39.024 82 50 0 17 98 47 128 5.79e-18 73.9
Msa0296620 AT3G17880.2 34.177 79 52 0 20 98 288 366 9.91e-17 74.3
Msa0296620 AT3G17880.1 34.177 79 52 0 20 98 295 373 1.04e-16 74.3
Msa0296620 AT5G42980.1 38.667 75 46 0 20 94 30 104 1.60e-16 69.7
Msa0296620 AT1G69880.1 32.955 88 59 0 17 104 59 146 1.19e-15 68.2
Msa0296620 AT4G04950.1 32.967 91 61 0 17 107 21 111 5.99e-13 63.9
Msa0296620 AT4G32580.1 29.808 104 71 2 5 107 10 112 1.46e-12 60.5
Msa0296620 AT2G35010.2 32.530 83 54 1 21 101 110 192 5.67e-11 57.0
Msa0296620 AT2G35010.1 32.530 83 54 1 21 101 110 192 5.67e-11 57.0

Find 28 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTATATCAAGTTTCATTT+AGG 0.145756 2_3:+50026466 Msa0296620:three_prime_UTR
ATTATATCAAGTTTCATTTA+GGG 0.286470 2_3:+50026467 Msa0296620:three_prime_UTR
TCCTTCCTAAAGATCTATTA+TGG 0.287061 2_3:+50026270 Msa0296620:exon
AAAGGATTCATTTGTATAGA+AGG 0.303846 2_3:-50024123 None:intergenic
GGCCTAGAACTATATAGTTT+TGG 0.304697 2_3:+50026335 Msa0296620:three_prime_UTR
GAATCCTTTCTTTCAAGAAT+TGG 0.317619 2_3:+50024137 Msa0296620:CDS
TATGGCTTTAATTTCCATCT+TGG 0.365887 2_3:-50026146 None:intergenic
GTTTACTAAAGTTGTAACTA+TGG 0.369757 2_3:+50026314 Msa0296620:three_prime_UTR
GATGCCAATTCTTGAAAGAA+AGG 0.374604 2_3:-50024141 None:intergenic
GTGCAAATCCTGATGAAATA+AGG 0.381132 2_3:+50026218 Msa0296620:CDS
GTCCAAAACTATATAGTTCT+AGG 0.383064 2_3:-50026337 None:intergenic
ATTGGATGTGGATGAGGTTA+AGG 0.406643 2_3:+50024191 Msa0296620:CDS
TCTCTTTCTCACATTGGATG+TGG 0.439009 2_3:+50024179 Msa0296620:CDS
GGCTTTAATTTCCATCTTGG+AGG 0.439612 2_3:-50026143 None:intergenic
ATCCTGATGAAATAAGGAAA+AGG 0.449385 2_3:+50026224 Msa0296620:CDS
ACAACAACAAAAGAAAGAAA+TGG 0.465941 2_3:+50023716 Msa0296620:CDS
TCTCACATTGGATGTGGATG+AGG 0.476730 2_3:+50024185 Msa0296620:CDS
TCCTGATGAAATAAGGAAAA+GGG 0.497571 2_3:+50026225 Msa0296620:CDS
AGATGTTCTCTTTCTCACAT+TGG 0.507095 2_3:+50024173 Msa0296620:CDS
TCAGGAAATTGCCTCCAAGA+TGG 0.538009 2_3:+50026132 Msa0296620:intron
TCCATAATAGATCTTTAGGA+AGG 0.541604 2_3:-50026271 None:intergenic
AACTCTTGTGGACAAAATTG+TGG 0.565813 2_3:+50026195 Msa0296620:CDS
TTTGAATGGAGGAACTCTTG+TGG 0.568819 2_3:+50026183 Msa0296620:CDS
ACAACAAAAGAAAGAAATGG+AGG 0.594542 2_3:+50023719 Msa0296620:CDS
CAACAAAAGAAAGAAATGGA+GGG 0.610986 2_3:+50023720 Msa0296620:CDS
ACTCTTGTGGACAAAATTGT+GGG 0.620063 2_3:+50026196 Msa0296620:CDS
TTATATCAAGTTTCATTTAG+GGG 0.624874 2_3:+50026468 Msa0296620:three_prime_UTR
AAACACACACAACAACCAGT+AGG 0.679842 2_3:-50026359 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTAAATATTACTAAAAT+TGG + chr2_3:50024052-50024071 Msa0296620:intron 10.0%
!!! AAAAAATTCTAATTTTTTTC+AGG - chr2_3:50024907-50024926 None:intergenic 10.0%
!!! TATAATATTTTGAATTTTTC+TGG + chr2_3:50025033-50025052 Msa0296620:intron 10.0%
!!! TGAAAATTGAAAATTTTATA+GGG + chr2_3:50025117-50025136 Msa0296620:intron 10.0%
!!! TTATTTTATTATATTGTATC+GGG + chr2_3:50025229-50025248 Msa0296620:intron 10.0%
!!! TAATAATTAACTTTTGATAT+AGG - chr2_3:50026003-50026022 None:intergenic 10.0%
!!! TAGAATTTTTGAGATATTTT+TGG - chr2_3:50023746-50023765 None:intergenic 15.0%
!! AAAATATCTCAAAAATTCTA+AGG + chr2_3:50023746-50023765 Msa0296620:CDS 15.0%
!! TTTAATTGCATATACTATAA+AGG - chr2_3:50024516-50024535 None:intergenic 15.0%
!!! ATTTGGAGTAAAAAAATAAA+AGG - chr2_3:50024622-50024641 None:intergenic 15.0%
!!! TTTTATTTTTTTACTCCAAA+TGG + chr2_3:50024621-50024640 Msa0296620:intron 15.0%
!!! TTTATTTTTTTACTCCAAAT+GGG + chr2_3:50024622-50024641 Msa0296620:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr2_3:50024802-50024821 None:intergenic 15.0%
!!! CATAAATTAAGTTGAAAATA+GGG - chr2_3:50024833-50024852 None:intergenic 15.0%
!!! ACATAAATTAAGTTGAAAAT+AGG - chr2_3:50024834-50024853 None:intergenic 15.0%
!!! AAATTTTCAATTTTCACTTT+TGG - chr2_3:50025113-50025132 None:intergenic 15.0%
!!! GTGAAAATTGAAAATTTTAT+AGG + chr2_3:50025116-50025135 Msa0296620:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr2_3:50025717-50025736 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr2_3:50025716-50025735 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr2_3:50025625-50025644 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr2_3:50025525-50025544 Msa0296620:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr2_3:50025716-50025735 Msa0296620:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr2_3:50025717-50025736 Msa0296620:intron 15.0%
!!! TATTTTTGTTTGATACAATA+GGG - chr2_3:50025791-50025810 None:intergenic 15.0%
!!! ATATTTTTGTTTGATACAAT+AGG - chr2_3:50025792-50025811 None:intergenic 15.0%
!! TAAATTTCATAATGTTAATG+AGG + chr2_3:50025867-50025886 Msa0296620:intron 15.0%
!! AATTATATCAAGTTTCATTT+AGG + chr2_3:50026466-50026485 Msa0296620:three_prime_UTR 15.0%
!! ATTATATCAAGTTTCATTTA+GGG + chr2_3:50026467-50026486 Msa0296620:three_prime_UTR 15.0%
!!! AAGTATATCATGTTTTTATT+TGG + chr2_3:50026491-50026510 Msa0296620:three_prime_UTR 15.0%
!!! GTACATAATAGTTTTTTTTA+AGG - chr2_3:50026544-50026563 None:intergenic 15.0%
!! AAATAGACTCAAAAAAATCA+TGG + chr2_3:50023775-50023794 Msa0296620:intron 20.0%
!! AATAGACTCAAAAAAATCAT+GGG + chr2_3:50023776-50023795 Msa0296620:intron 20.0%
!!! AATGATTTTTCATAAAGGAA+AGG - chr2_3:50023848-50023867 None:intergenic 20.0%
!!! TGCTAAATGATTTTTCATAA+AGG - chr2_3:50023853-50023872 None:intergenic 20.0%
!!! TAAAGGGTTAAATATGTTTT+TGG + chr2_3:50024715-50024734 Msa0296620:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG - chr2_3:50025177-50025196 None:intergenic 20.0%
!!! TAAAATTTTCCTTCAACTTT+TGG + chr2_3:50024775-50024794 Msa0296620:intron 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr2_3:50024803-50024822 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr2_3:50024806-50024825 Msa0296620:intron 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG + chr2_3:50025085-50025104 Msa0296620:intron 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG + chr2_3:50025086-50025105 Msa0296620:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG + chr2_3:50025177-50025196 Msa0296620:intron 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG + chr2_3:50025560-50025579 Msa0296620:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr2_3:50025654-50025673 Msa0296620:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr2_3:50025655-50025674 Msa0296620:intron 20.0%
!! TCTGTAAAAAAAAATCTACA+TGG - chr2_3:50025925-50025944 None:intergenic 20.0%
!! TTATTGTTTACATATATACG+TGG + chr2_3:50026103-50026122 Msa0296620:intron 20.0%
!!! TTTTTCCATAATAGATCTTT+AGG - chr2_3:50026278-50026297 None:intergenic 20.0%
!! TTATATCAAGTTTCATTTAG+GGG + chr2_3:50026468-50026487 Msa0296620:three_prime_UTR 20.0%
!!! TATATCATGTTTTTATTTGG+TGG + chr2_3:50026494-50026513 Msa0296620:three_prime_UTR 20.0%
!!! ATATCATGTTTTTATTTGGT+GGG + chr2_3:50026495-50026514 Msa0296620:three_prime_UTR 20.0%
! ACAACAACAAAAGAAAGAAA+TGG + chr2_3:50023716-50023735 Msa0296620:CDS 25.0%
!!! CTCACTGTAATTTTAATATG+CGG - chr2_3:50023878-50023897 None:intergenic 25.0%
! AAAGGATTCATTTGTATAGA+AGG - chr2_3:50024126-50024145 None:intergenic 25.0%
! ATGGTATATAAAGGAAATCA+AGG + chr2_3:50024311-50024330 Msa0296620:intron 25.0%
!! ATGTGCTTAACTTTTAACAA+TGG + chr2_3:50024483-50024502 Msa0296620:intron 25.0%
!! TGTGCTTAACTTTTAACAAT+GGG + chr2_3:50024484-50024503 Msa0296620:intron 25.0%
!! CATATTTAACCCTTTAAAAG+AGG - chr2_3:50024711-50024730 None:intergenic 25.0%
! CGAAAAGTTGACATATTTAT+AGG - chr2_3:50025176-50025195 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr2_3:50025146-50025165 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr2_3:50025145-50025164 None:intergenic 25.0%
! TTATAGGGATTAAAAGTTGA+AGG + chr2_3:50025132-50025151 Msa0296620:intron 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr2_3:50025145-50025164 Msa0296620:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr2_3:50025146-50025165 Msa0296620:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG + chr2_3:50025176-50025195 Msa0296620:intron 25.0%
!! AAGAGGGTTAAATATGTTTT+TGG - chr2_3:50025204-50025223 None:intergenic 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr2_3:50025365-50025384 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr2_3:50025366-50025385 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr2_3:50025688-50025707 Msa0296620:intron 25.0%
!!! ATAATGTTAATGAGGTATTG+AGG + chr2_3:50025875-50025894 Msa0296620:intron 25.0%
!! TATTTTCCCTAACGTTAATA+TGG - chr2_3:50025965-50025984 None:intergenic 25.0%
! GTTTACTAAAGTTGTAACTA+TGG + chr2_3:50026314-50026333 Msa0296620:three_prime_UTR 25.0%
ACAACAAAAGAAAGAAATGG+AGG + chr2_3:50023719-50023738 Msa0296620:CDS 30.0%
CAACAAAAGAAAGAAATGGA+GGG + chr2_3:50023720-50023739 Msa0296620:CDS 30.0%
!! AAGTTTTGTCAAAATCACAG+TGG + chr2_3:50023958-50023977 Msa0296620:intron 30.0%
! AAATTGGTCTAAAATACTGC+AGG + chr2_3:50024068-50024087 Msa0296620:intron 30.0%
GAATCCTTTCTTTCAAGAAT+TGG + chr2_3:50024137-50024156 Msa0296620:CDS 30.0%
TATATACCATTTGCATGTCT+TGG - chr2_3:50024301-50024320 None:intergenic 30.0%
GACATGCAAATGGTATATAA+AGG + chr2_3:50024302-50024321 Msa0296620:intron 30.0%
! ACACTTTAGATGGATTTGTA+TGG - chr2_3:50024346-50024365 None:intergenic 30.0%
! CCATCTAAAGTGTTTGTATT+CGG + chr2_3:50024353-50024372 Msa0296620:intron 30.0%
ATATGATACATAGTGGTGTT+TGG - chr2_3:50024382-50024401 None:intergenic 30.0%
GCATATAGTATAAGCAAACA+AGG - chr2_3:50024408-50024427 None:intergenic 30.0%
! ATTGCTTCTACCTCTTTTAA+AGG + chr2_3:50024698-50024717 Msa0296620:intron 30.0%
! TTGCTTCTACCTCTTTTAAA+GGG + chr2_3:50024699-50024718 Msa0296620:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr2_3:50025748-50025767 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr2_3:50025747-50025766 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + chr2_3:50025428-50025447 Msa0296620:intron 30.0%
CAGTGCAGAAAAACAAAATT+AGG + chr2_3:50025687-50025706 Msa0296620:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr2_3:50025747-50025766 Msa0296620:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr2_3:50025748-50025767 Msa0296620:intron 30.0%
AAGTGAACCATATTAACGTT+AGG + chr2_3:50025955-50025974 Msa0296620:intron 30.0%
AGTGAACCATATTAACGTTA+GGG + chr2_3:50025956-50025975 Msa0296620:intron 30.0%
ATATATACGTGGCTATATTC+AGG + chr2_3:50026114-50026133 Msa0296620:intron 30.0%
!! TATGGCTTTAATTTCCATCT+TGG - chr2_3:50026149-50026168 None:intergenic 30.0%
CAAAAAAAGAAAGGTAGGTA+TGG - chr2_3:50026167-50026186 None:intergenic 30.0%
CCATTCAAAAAAAGAAAGGT+AGG - chr2_3:50026172-50026191 None:intergenic 30.0%
!!! CCTACCTTTCTTTTTTTGAA+TGG + chr2_3:50026169-50026188 Msa0296620:CDS 30.0%
!!! ACCTTTCTTTTTTTGAATGG+AGG + chr2_3:50026172-50026191 Msa0296620:CDS 30.0%
TCCTCCATTCAAAAAAAGAA+AGG - chr2_3:50026176-50026195 None:intergenic 30.0%
ATCCTGATGAAATAAGGAAA+AGG + chr2_3:50026224-50026243 Msa0296620:CDS 30.0%
TCCTGATGAAATAAGGAAAA+GGG + chr2_3:50026225-50026244 Msa0296620:CDS 30.0%
TCCTTCCTAAAGATCTATTA+TGG + chr2_3:50026270-50026289 Msa0296620:exon 30.0%
! TCCATAATAGATCTTTAGGA+AGG - chr2_3:50026274-50026293 None:intergenic 30.0%
TGGAAAAAGTGAAATGAACA+AGG + chr2_3:50026290-50026309 Msa0296620:three_prime_UTR 30.0%
GTCCAAAACTATATAGTTCT+AGG - chr2_3:50026340-50026359 None:intergenic 30.0%
! ACTTAGTGGGTAACTTTGAT+TGG - chr2_3:50023823-50023842 None:intergenic 35.0%
TAAAGGAAAGGAGACTTAGT+GGG - chr2_3:50023836-50023855 None:intergenic 35.0%
ATAAAGGAAAGGAGACTTAG+TGG - chr2_3:50023837-50023856 None:intergenic 35.0%
!! TGGTTCATTTCTCTGCTTTT+TGG + chr2_3:50024094-50024113 Msa0296620:CDS 35.0%
GATGCCAATTCTTGAAAGAA+AGG - chr2_3:50024144-50024163 None:intergenic 35.0%
AGATGTTCTCTTTCTCACAT+TGG + chr2_3:50024173-50024192 Msa0296620:CDS 35.0%
CCGAATACAAACACTTTAGA+TGG - chr2_3:50024356-50024375 None:intergenic 35.0%
! AAGGAGCATATGATACATAG+TGG - chr2_3:50024389-50024408 None:intergenic 35.0%
GATCTAGAAACTGAAATTGC+AGG - chr2_3:50024591-50024610 None:intergenic 35.0%
TACAAACTACCACCAATAGT+TGG - chr2_3:50024657-50024676 None:intergenic 35.0%
TTATAGGGACCAAAAGTTGA+AGG - chr2_3:50024787-50024806 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr2_3:50025732-50025751 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr2_3:50025732-50025751 Msa0296620:intron 35.0%
TGGTTGTTACACTGGAAAAA+TGG - chr2_3:50025905-50025924 None:intergenic 35.0%
AATCTACATGGTTGTTACAC+TGG - chr2_3:50025913-50025932 None:intergenic 35.0%
AACTCTTGTGGACAAAATTG+TGG + chr2_3:50026195-50026214 Msa0296620:CDS 35.0%
ACTCTTGTGGACAAAATTGT+GGG + chr2_3:50026196-50026215 Msa0296620:CDS 35.0%
GTGCAAATCCTGATGAAATA+AGG + chr2_3:50026218-50026237 Msa0296620:CDS 35.0%
!! ACCCTTTTCCTTATTTCATC+AGG - chr2_3:50026229-50026248 None:intergenic 35.0%
! GGCCTAGAACTATATAGTTT+TGG + chr2_3:50026335-50026354 Msa0296620:three_prime_UTR 35.0%
!!! CTATATAGTTTTGGACCTAC+TGG + chr2_3:50026344-50026363 Msa0296620:three_prime_UTR 35.0%
! GTCTAAAATACTGCAGGTTG+TGG + chr2_3:50024074-50024093 Msa0296620:intron 40.0%
TCTCTTTCTCACATTGGATG+TGG + chr2_3:50024179-50024198 Msa0296620:CDS 40.0%
ATTGGATGTGGATGAGGTTA+AGG + chr2_3:50024191-50024210 Msa0296620:CDS 40.0%
CATTTGCATGTCTTGGCAAA+TGG - chr2_3:50024294-50024313 None:intergenic 40.0%
CATTTGCCAAGACATGCAAA+TGG + chr2_3:50024292-50024311 Msa0296620:intron 40.0%
TTCATGCTTCCAACTATTGG+TGG + chr2_3:50024645-50024664 Msa0296620:intron 40.0%
! GGCTTTAATTTCCATCTTGG+AGG - chr2_3:50026146-50026165 None:intergenic 40.0%
TTTGAATGGAGGAACTCTTG+TGG + chr2_3:50026183-50026202 Msa0296620:CDS 40.0%
AAACACACACAACAACCAGT+AGG - chr2_3:50026362-50026381 None:intergenic 40.0%
! TTTGTGCGTGCATTTTTGTG+TGG + chr2_3:50026639-50026658 Msa0296620:three_prime_UTR 40.0%
TCTCACATTGGATGTGGATG+AGG + chr2_3:50024185-50024204 Msa0296620:CDS 45.0%
! GTTGGAAGCATGAACCCATT+TGG - chr2_3:50024639-50024658 None:intergenic 45.0%
GGGTTCATGCTTCCAACTAT+TGG + chr2_3:50024642-50024661 Msa0296620:intron 45.0%
TCAGGAAATTGCCTCCAAGA+TGG + chr2_3:50026132-50026151 Msa0296620:intron 45.0%
!!! ATGAATTTTTATATTTTTTA+TGG - chr2_3:50024961-50024980 None:intergenic 5.0%
!!! AAAAATTCTAAATTTTTTTT+TGG + chr2_3:50025001-50025020 Msa0296620:intron 5.0%
!! TAATAAAATAATTTAAAAGA+GGG - chr2_3:50025220-50025239 None:intergenic 5.0%
!! ATAATAAAATAATTTAAAAG+AGG - chr2_3:50025221-50025240 None:intergenic 5.0%
!!! ATTATTTTATTATATTGTAT+CGG + chr2_3:50025228-50025247 Msa0296620:intron 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG - chr2_3:50025332-50025351 None:intergenic 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG - chr2_3:50025333-50025352 None:intergenic 5.0%
!!! TATAATAAATTATTCATTTT+TGG + chr2_3:50025817-50025836 Msa0296620:intron 5.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 50023711 50026690 50023711 ID=Msa0296620;Name=Msa0296620
chr2_3 mRNA 50023711 50026690 50023711 ID=Msa0296620-mRNA-1;Parent=Msa0296620;Name=Msa0296620-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.5|0.66|1|1|1|3|411|107
chr2_3 exon 50023711 50023767 50023711 ID=Msa0296620-mRNA-1:exon:15713;Parent=Msa0296620-mRNA-1
chr2_3 exon 50024090 50024212 50024090 ID=Msa0296620-mRNA-1:exon:15714;Parent=Msa0296620-mRNA-1
chr2_3 exon 50026136 50026690 50026136 ID=Msa0296620-mRNA-1:exon:15715;Parent=Msa0296620-mRNA-1
chr2_3 CDS 50023711 50023767 50023711 ID=Msa0296620-mRNA-1:cds;Parent=Msa0296620-mRNA-1
chr2_3 CDS 50024090 50024212 50024090 ID=Msa0296620-mRNA-1:cds;Parent=Msa0296620-mRNA-1
chr2_3 CDS 50026136 50026279 50026136 ID=Msa0296620-mRNA-1:cds;Parent=Msa0296620-mRNA-1
chr2_3 three_prime_UTR 50026280 50026690 50026280 ID=Msa0296620-mRNA-1:three_prime_utr;Parent=Msa0296620-mRNA-1
Gene Sequence

>Msa0296620

ATGCGACAACAACAAAAGAAAGAAATGGAGGGCCAAAAATATCTCAAAAATTCTAAGGTTGTGGTTCATTTCTCTGCTTTTTGGTGTGTTCCTTCTATACAAATGAATCCTTTCTTTCAAGAATTGGCATCAAACTATCAAGATGTTCTCTTTCTCACATTGGATGTGGATGAGGTTAAGGAAATTGCCTCCAAGATGGAAATTAAAGCCATACCTACCTTTCTTTTTTTGAATGGAGGAACTCTTGTGGACAAAATTGTGGGTGCAAATCCTGATGAAATAAGGAAAAGGGTTGATCATTTTATTCAATCAACTCCTTCCTAA
Protein sequence

>Msa0296620

MRQQQKKEMEGQKYLKNSKVVVHFSAFWCVPSIQMNPFFQELASNYQDVLFLTLDVDEVKEIASKMEIKAIPTFLFLNGGTLVDKIVGANPDEIRKRVDHFIQSTPS*