AlfalfaGEDB | Msa0217480

M. sativa cultivar zhongmu-4 / Msa0217480

KEGG: K03671
GO: GO:0003674 GO:0003756 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016853 GO:0016860 GO:0016864 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:0140096 GO:1990748
PFAM: PF00085.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217480	XP_003596610.1	97.541	122	3	0	1	122	1	122	2.37e-83	249

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217480	sp\|Q8LDI5\|CXXS1_ARATH	63.063	111	41	0	10	120	2	112	2.43e-51	161

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217480	G7IHD7	97.541	122	3	0	1	122	1	122	1.13e-83	249

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007470	Msa0217480	0.800056	1.723303e-48	-8.615850e-47
Msa0018070	Msa0217480	0.807459	5.002740e-50	-8.615850e-47
Msa0030160	Msa0217480	0.803309	3.706816e-49	-8.615850e-47
Msa0032080	Msa0217480	0.830686	2.553104e-55	-8.615850e-47
Msa0044000	Msa0217480	0.814991	1.161734e-51	-8.615850e-47
Msa0079070	Msa0217480	0.801609	8.304050e-49	-8.615850e-47
Msa0090570	Msa0217480	0.818445	1.952520e-52	-8.615850e-47
Msa0115270	Msa0217480	0.807402	5.143101e-50	-8.615850e-47
Msa0127800	Msa0217480	0.822710	2.047571e-53	-8.615850e-47
Msa0138020	Msa0217480	0.831211	1.898527e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217480	MtrunA17_Chr2g0319291	97.541	122	3	1	122	1	122	2.18e-87	249
Msa0217480	MtrunA17_Chr4g0042051	71.311	122	35	1	122	1	122	4.38e-64	191
Msa0217480	MtrunA17_Chr2g0280411	61.261	111	43	10	120	9	119	1.21e-48	151
Msa0217480	MtrunA17_Chr8g0334481	39.394	99	60	15	113	31	129	2.36e-24	90.5
Msa0217480	MtrunA17_Chr7g0245141	36.364	110	70	12	121	26	135	3.97e-24	90.1
Msa0217480	MtrunA17_Chr7g0216481	39.175	97	59	17	113	33	129	5.61e-24	89.4
Msa0217480	MtrunA17_Chr5g0404831	34.513	113	74	8	120	6	118	7.82e-24	88.6
Msa0217480	MtrunA17_Chr1g0155721	34.513	113	74	8	120	4	116	1.35e-22	85.5
Msa0217480	MtrunA17_Chr3g0142051	36.275	102	65	12	113	8	109	2.55e-22	84.7
Msa0217480	MtrunA17_Chr8g0393201	34.579	107	70	7	113	224	330	2.48e-21	86.7

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0217480	AT1G11530.1	63.063	111	41	10	120	2	112	2.47e-52	161
Msa0217480	AT3G08710.2	42.056	107	62	15	121	28	134	3.54e-26	95.5
Msa0217480	AT3G08710.3	42.056	107	62	15	121	28	134	3.54e-26	95.5
Msa0217480	AT3G08710.1	42.056	107	62	15	121	28	134	3.54e-26	95.5
Msa0217480	AT3G51030.1	39.623	106	64	8	113	4	109	6.11e-25	91.7
Msa0217480	AT3G56420.1	38.462	104	64	10	113	40	143	3.15e-23	88.6
Msa0217480	AT3G56420.2	38.462	104	64	10	113	40	143	3.15e-23	88.6
Msa0217480	AT3G56420.3	38.462	104	64	10	113	40	143	3.15e-23	88.6
Msa0217480	AT2G40790.2	37.037	108	68	6	113	36	143	2.09e-22	86.3
Msa0217480	AT2G40790.1	37.037	108	68	6	113	36	143	2.09e-22	86.3

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Find 29 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACACACAACAACCAGT+AGG	0.679842	2_1:-64308143	None:intergenic
AAAGGATTCATTTGTATAGA+AGG	0.325800	2_1:-64306449	None:intergenic
AACTCTTGTGGACAAAATTG+TGG	0.565813	2_1:+64307979	Msa0217480:CDS
AATTATATCAAGTTTCATTT+AGG	0.145756	2_1:+64308250	Msa0217480:three_prime_UTR
ACAACAAAAGAAAGAAATGG+AGG	0.594542	2_1:+64306045	Msa0217480:exon
ACAACAACAAAAGAAAGAAA+TGG	0.465941	2_1:+64306042	Msa0217480:exon
ACTCTTGTGGACAAAATTGT+GGG	0.620063	2_1:+64307980	Msa0217480:CDS
ACTTACTGGGTAACTTTGAT+TGG	0.376028	2_1:-64306146	None:intergenic
AGATGTTCTCTTTCTCACAT+TGG	0.507095	2_1:+64306499	Msa0217480:CDS
ATCCTGATGAAATAAGGAAA+AGG	0.449385	2_1:+64308008	Msa0217480:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACAAAAGAAAGAAATGG+AGG	+	chr2_1:64306045-64306064	Msa0217480:exon	30.0%
CAACAAAAGAAAGAAATGGA+GGG	+	chr2_1:64306046-64306065	Msa0217480:exon	30.0%
GAATCCTTTCTTTCAAGAAT+TGG	+	chr2_1:64306463-64306482	Msa0217480:CDS	30.0%
TATATACCATTTGCATGTCT+TGG	-	chr2_1:64306627-64306646	None:intergenic	30.0%
GACATGCAAATGGTATATAA+AGG	+	chr2_1:64306628-64306647	Msa0217480:intron	30.0%
ATATGATACATAGTGGTGTT+TGG	-	chr2_1:64306708-64306727	None:intergenic	30.0%
GCATATAGTATAAGCAAACA+AGG	-	chr2_1:64306734-64306753	None:intergenic	30.0%
AAGCATGAACCCATTTAATT+TGG	-	chr2_1:64306965-64306984	None:intergenic	30.0%
AAGTGAACCATATTAACGTT+AGG	+	chr2_1:64307735-64307754	Msa0217480:intron	30.0%
AGTGAACCATATTAACGTTA+GGG	+	chr2_1:64307736-64307755	Msa0217480:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	64306039	64308474	64306039	ID=Msa0217480;Name=Msa0217480
chr2_1	mRNA	64306039	64308474	64306039	ID=Msa0217480-mRNA-1;Parent=Msa0217480;Name=Msa0217480-mRNA-1;_AED=0.13;_eAED=0.13;_QI=22\|1\|1\|1\|1\|1\|3\|411\|122
chr2_1	exon	64306039	64306162	64306039	ID=Msa0217480-mRNA-1:exon:17839;Parent=Msa0217480-mRNA-1
chr2_1	exon	64306416	64306538	64306416	ID=Msa0217480-mRNA-1:exon:17840;Parent=Msa0217480-mRNA-1
chr2_1	exon	64307920	64308474	64307920	ID=Msa0217480-mRNA-1:exon:17841;Parent=Msa0217480-mRNA-1
chr2_1	five_prime_UTR	64306039	64306060	64306039	ID=Msa0217480-mRNA-1:five_prime_utr;Parent=Msa0217480-mRNA-1
chr2_1	CDS	64306061	64306162	64306061	ID=Msa0217480-mRNA-1:cds;Parent=Msa0217480-mRNA-1
chr2_1	CDS	64306416	64306538	64306416	ID=Msa0217480-mRNA-1:cds;Parent=Msa0217480-mRNA-1
chr2_1	CDS	64307920	64308063	64307920	ID=Msa0217480-mRNA-1:cds;Parent=Msa0217480-mRNA-1
chr2_1	three_prime_UTR	64308064	64308474	64308064	ID=Msa0217480-mRNA-1:three_prime_utr;Parent=Msa0217480-mRNA-1

Gene Sequence	>Msa0217480 ATGGAGGGCCAAAAATATCTCAAAAATTCTAAGGTTATCAAAATAGACTCAAAAAAATCATGGGAACATTACATCTCTTATGCTACCAATCAAAGTTACCCAGTTGTGGTTCATTTCTCTGCTTTTTGGTGTGCTCCTTCTATACAAATGAATCCTTTCTTTCAAGAATTGGCATCAAACTATCAAGATGTTCTCTTTCTCACATTGGATGTGGATGAGGTTAAGGAAATTGCCTCCAAGATGGAAATTAAAGCCATACCTACCTTTCTTTTTTTGAATGGAGGAACTCTTGTGGACAAAATTGTGGGTGCAAATCCTGATGAAATAAGGAAAAGGGTTGATCATTTTATTCAATCAACTCCTTCCTAA
Protein sequence	>Msa0217480 MEGQKYLKNSKVIKIDSKKSWEHYISYATNQSYPVVVHFSAFWCAPSIQMNPFFQELASNYQDVLFLTLDVDEVKEIASKMEIKAIPTFLFLNGGTLVDKIVGANPDEIRKRVDHFIQSTPS*