AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0217480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217480 MtrunA17_Chr2g0319291 97.541 122 3 0 1 122 1 122 2.18e-87 249
Msa0217480 MtrunA17_Chr4g0042051 71.311 122 35 0 1 122 1 122 4.38e-64 191
Msa0217480 MtrunA17_Chr2g0280411 61.261 111 43 0 10 120 9 119 1.21e-48 151
Msa0217480 MtrunA17_Chr8g0334481 39.394 99 60 0 15 113 31 129 2.36e-24 90.5
Msa0217480 MtrunA17_Chr7g0245141 36.364 110 70 0 12 121 26 135 3.97e-24 90.1
Msa0217480 MtrunA17_Chr7g0216481 39.175 97 59 0 17 113 33 129 5.61e-24 89.4
Msa0217480 MtrunA17_Chr5g0404831 34.513 113 74 0 8 120 6 118 7.82e-24 88.6
Msa0217480 MtrunA17_Chr1g0155721 34.513 113 74 0 8 120 4 116 1.35e-22 85.5
Msa0217480 MtrunA17_Chr3g0142051 36.275 102 65 0 12 113 8 109 2.55e-22 84.7
Msa0217480 MtrunA17_Chr8g0393201 34.579 107 70 0 7 113 224 330 2.48e-21 86.7
Msa0217480 MtrunA17_Chr5g0415771 34.286 105 69 0 10 114 19 123 6.34e-17 71.2
Msa0217480 MtrunA17_Chr5g0415761 33.019 106 71 0 9 114 19 124 2.93e-15 67.0
Msa0217480 MtrunA17_Chr5g0415741 31.776 107 73 0 8 114 16 122 8.44e-14 63.2
Msa0217480 MtrunA17_Chr4g0052481 25.000 108 75 2 13 118 62 165 1.72e-12 60.8
Msa0217480 MtrunA17_Chr4g0047431 35.000 80 52 0 34 113 23 102 4.25e-12 61.6
Msa0217480 MtrunA17_Chr2g0317731 37.838 74 45 1 34 106 88 161 1.63e-11 58.2
Msa0217480 MtrunA17_Chr7g0249461 34.884 86 55 1 35 119 101 186 7.74e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217480 AT1G11530.1 63.063 111 41 0 10 120 2 112 2.47e-52 161
Msa0217480 AT3G08710.2 42.056 107 62 0 15 121 28 134 3.54e-26 95.5
Msa0217480 AT3G08710.3 42.056 107 62 0 15 121 28 134 3.54e-26 95.5
Msa0217480 AT3G08710.1 42.056 107 62 0 15 121 28 134 3.54e-26 95.5
Msa0217480 AT3G51030.1 39.623 106 64 0 8 113 4 109 6.11e-25 91.7
Msa0217480 AT3G56420.1 38.462 104 64 0 10 113 40 143 3.15e-23 88.6
Msa0217480 AT3G56420.2 38.462 104 64 0 10 113 40 143 3.15e-23 88.6
Msa0217480 AT3G56420.3 38.462 104 64 0 10 113 40 143 3.15e-23 88.6
Msa0217480 AT2G40790.2 37.037 108 68 0 6 113 36 143 2.09e-22 86.3
Msa0217480 AT2G40790.1 37.037 108 68 0 6 113 36 143 2.09e-22 86.3
Msa0217480 AT1G59730.1 31.776 107 73 0 9 115 20 126 2.41e-22 85.5
Msa0217480 AT1G45145.1 32.692 104 70 0 10 113 5 108 1.07e-21 83.6
Msa0217480 AT5G39950.1 34.615 104 68 0 10 113 25 128 3.06e-21 82.8
Msa0217480 AT3G17880.2 33.036 112 75 0 2 113 255 366 2.18e-19 82.4
Msa0217480 AT3G17880.1 33.036 112 75 0 2 113 262 373 2.53e-19 82.0
Msa0217480 AT1G19730.1 30.841 107 73 1 8 113 4 110 3.23e-19 77.0
Msa0217480 AT5G42980.1 32.673 101 68 0 9 109 4 104 1.08e-18 75.9
Msa0217480 AT1G69880.1 27.778 108 78 0 12 119 39 146 1.63e-17 73.6
Msa0217480 AT2G35010.2 30.841 107 72 1 12 116 86 192 1.86e-14 66.6
Msa0217480 AT2G35010.1 30.841 107 72 1 12 116 86 192 1.86e-14 66.6
Msa0217480 AT1G43560.1 27.523 109 77 2 12 118 56 164 3.17e-13 62.8
Msa0217480 AT4G04950.1 34.831 89 58 0 34 122 23 111 3.35e-13 65.1
Msa0217480 AT4G32580.1 33.333 90 59 1 34 122 23 112 1.27e-12 61.2
Msa0217480 AT1G31020.1 31.633 98 65 1 10 105 49 146 2.14e-12 60.5
Msa0217480 AT4G03520.1 30.841 107 69 3 13 117 82 185 6.34e-12 59.7
Msa0217480 AT3G15360.1 32.558 86 56 2 34 117 106 191 3.87e-11 57.8

Find 29 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTATATCAAGTTTCATTT+AGG 0.145756 2_1:+64308250 Msa0217480:three_prime_UTR
ATTATATCAAGTTTCATTTA+GGG 0.286470 2_1:+64308251 Msa0217480:three_prime_UTR
TCCTTCCTAAAGATCTATTA+TGG 0.287061 2_1:+64308054 Msa0217480:exon
GGCCTAGAACTATATAGTTT+TGG 0.304697 2_1:+64308119 Msa0217480:three_prime_UTR
GAATCCTTTCTTTCAAGAAT+TGG 0.317619 2_1:+64306463 Msa0217480:CDS
AAAGGATTCATTTGTATAGA+AGG 0.325800 2_1:-64306449 None:intergenic
TATGGCTTTAATTTCCATCT+TGG 0.365887 2_1:-64307930 None:intergenic
GTTTACTAAAGTTGTAACTA+TGG 0.369757 2_1:+64308098 Msa0217480:three_prime_UTR
GATGCCAATTCTTGAAAGAA+AGG 0.374604 2_1:-64306467 None:intergenic
ACTTACTGGGTAACTTTGAT+TGG 0.376028 2_1:-64306146 None:intergenic
GTGCAAATCCTGATGAAATA+AGG 0.381132 2_1:+64308002 Msa0217480:CDS
GTCCAAAACTATATAGTTCT+AGG 0.383064 2_1:-64308121 None:intergenic
ATTGGATGTGGATGAGGTTA+AGG 0.406643 2_1:+64306517 Msa0217480:CDS
TCTCTTTCTCACATTGGATG+TGG 0.439009 2_1:+64306505 Msa0217480:CDS
GGCTTTAATTTCCATCTTGG+AGG 0.439612 2_1:-64307927 None:intergenic
ATCCTGATGAAATAAGGAAA+AGG 0.449385 2_1:+64308008 Msa0217480:CDS
ACAACAACAAAAGAAAGAAA+TGG 0.465941 2_1:+64306042 Msa0217480:exon
TCTCACATTGGATGTGGATG+AGG 0.476730 2_1:+64306511 Msa0217480:CDS
TCCTGATGAAATAAGGAAAA+GGG 0.497571 2_1:+64308009 Msa0217480:CDS
AGATGTTCTCTTTCTCACAT+TGG 0.507095 2_1:+64306499 Msa0217480:CDS
TCAGGAAATTGCCTCCAAGA+TGG 0.538009 2_1:+64307916 Msa0217480:intron
TCCATAATAGATCTTTAGGA+AGG 0.541604 2_1:-64308055 None:intergenic
AACTCTTGTGGACAAAATTG+TGG 0.565813 2_1:+64307979 Msa0217480:CDS
TTTGAATGGAGGAACTCTTG+TGG 0.568819 2_1:+64307967 Msa0217480:CDS
ACAACAAAAGAAAGAAATGG+AGG 0.594542 2_1:+64306045 Msa0217480:exon
CAACAAAAGAAAGAAATGGA+GGG 0.610986 2_1:+64306046 Msa0217480:exon
ACTCTTGTGGACAAAATTGT+GGG 0.620063 2_1:+64307980 Msa0217480:CDS
TTATATCAAGTTTCATTTAG+GGG 0.624874 2_1:+64308252 Msa0217480:three_prime_UTR
AAACACACACAACAACCAGT+AGG 0.679842 2_1:-64308143 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTAAATATTACTAAAAT+TGG + chr2_1:64306378-64306397 Msa0217480:intron 10.0%
!!! AAAAAATTCTAATTTTTTTC+AGG - chr2_1:64307238-64307257 None:intergenic 10.0%
!!! TATAATATTTTGAATTTTTC+TGG + chr2_1:64307363-64307382 Msa0217480:intron 10.0%
!!! TGAAAATTGAAAATTTTATA+GGG + chr2_1:64307447-64307466 Msa0217480:intron 10.0%
!!! TAATAATTAACTTTTGATAT+AGG - chr2_1:64307783-64307802 None:intergenic 10.0%
!!! CTTTTAAATATTACTAAAAT+TGG + chr2_1:64306378-64306397 Msa0217480:intron 10.0%
!!! AAAAAATTCTAATTTTTTTC+AGG - chr2_1:64307238-64307257 None:intergenic 10.0%
!!! TATAATATTTTGAATTTTTC+TGG + chr2_1:64307363-64307382 Msa0217480:intron 10.0%
!!! TGAAAATTGAAAATTTTATA+GGG + chr2_1:64307447-64307466 Msa0217480:intron 10.0%
!!! TAATAATTAACTTTTGATAT+AGG - chr2_1:64307783-64307802 None:intergenic 10.0%
!!! TAGAATTTTTGAGATATTTT+TGG - chr2_1:64306072-64306091 None:intergenic 15.0%
!! AAAATATCTCAAAAATTCTA+AGG + chr2_1:64306072-64306091 Msa0217480:CDS 15.0%
!! TTTAATTGCATATACTATAA+AGG - chr2_1:64306842-64306861 None:intergenic 15.0%
!!! ATTTGGAGTAAAAAAATAAA+AGG - chr2_1:64306948-64306967 None:intergenic 15.0%
!!! TTTTTTTACTCCAAATTAAA+TGG + chr2_1:64306952-64306971 Msa0217480:intron 15.0%
!!! TTTTTTACTCCAAATTAAAT+GGG + chr2_1:64306953-64306972 Msa0217480:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr2_1:64307133-64307152 None:intergenic 15.0%
!!! CATAAATTAAGTTGAAAATA+GGG - chr2_1:64307164-64307183 None:intergenic 15.0%
!!! ACATAAATTAAGTTGAAAAT+AGG - chr2_1:64307165-64307184 None:intergenic 15.0%
!!! AAATTTTCAATTTTCACTTT+TGG - chr2_1:64307443-64307462 None:intergenic 15.0%
!!! GTGAAAATTGAAAATTTTAT+AGG + chr2_1:64307446-64307465 Msa0217480:intron 15.0%
!! TAAATTTCATAATGTTAATG+AGG + chr2_1:64307646-64307665 Msa0217480:intron 15.0%
!! AATTATATCAAGTTTCATTT+AGG + chr2_1:64308250-64308269 Msa0217480:three_prime_UTR 15.0%
!! ATTATATCAAGTTTCATTTA+GGG + chr2_1:64308251-64308270 Msa0217480:three_prime_UTR 15.0%
!!! AAGTATATCATGTTTTTATT+TGG + chr2_1:64308275-64308294 Msa0217480:three_prime_UTR 15.0%
!!! GTACATAATAGTTTTTTTTA+AGG - chr2_1:64308328-64308347 None:intergenic 15.0%
!! ATAAAAACTAAATAATCAAG+TGG + chr2_1:64308453-64308472 Msa0217480:three_prime_UTR 15.0%
!!! TAGAATTTTTGAGATATTTT+TGG - chr2_1:64306072-64306091 None:intergenic 15.0%
!! AAAATATCTCAAAAATTCTA+AGG + chr2_1:64306072-64306091 Msa0217480:CDS 15.0%
!! TTTAATTGCATATACTATAA+AGG - chr2_1:64306842-64306861 None:intergenic 15.0%
!!! ATTTGGAGTAAAAAAATAAA+AGG - chr2_1:64306948-64306967 None:intergenic 15.0%
!!! TTTTTTTACTCCAAATTAAA+TGG + chr2_1:64306952-64306971 Msa0217480:intron 15.0%
!!! TTTTTTACTCCAAATTAAAT+GGG + chr2_1:64306953-64306972 Msa0217480:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr2_1:64307133-64307152 None:intergenic 15.0%
!!! CATAAATTAAGTTGAAAATA+GGG - chr2_1:64307164-64307183 None:intergenic 15.0%
!!! ACATAAATTAAGTTGAAAAT+AGG - chr2_1:64307165-64307184 None:intergenic 15.0%
!!! AAATTTTCAATTTTCACTTT+TGG - chr2_1:64307443-64307462 None:intergenic 15.0%
!!! GTGAAAATTGAAAATTTTAT+AGG + chr2_1:64307446-64307465 Msa0217480:intron 15.0%
!! TAAATTTCATAATGTTAATG+AGG + chr2_1:64307646-64307665 Msa0217480:intron 15.0%
!! AATTATATCAAGTTTCATTT+AGG + chr2_1:64308250-64308269 Msa0217480:three_prime_UTR 15.0%
!! ATTATATCAAGTTTCATTTA+GGG + chr2_1:64308251-64308270 Msa0217480:three_prime_UTR 15.0%
!!! AAGTATATCATGTTTTTATT+TGG + chr2_1:64308275-64308294 Msa0217480:three_prime_UTR 15.0%
!!! GTACATAATAGTTTTTTTTA+AGG - chr2_1:64308328-64308347 None:intergenic 15.0%
!! AAATAGACTCAAAAAAATCA+TGG + chr2_1:64306101-64306120 Msa0217480:CDS 20.0%
!! AATAGACTCAAAAAAATCAT+GGG + chr2_1:64306102-64306121 Msa0217480:CDS 20.0%
!!! AATGATTTTTCATAAAGGAA+AGG - chr2_1:64306174-64306193 None:intergenic 20.0%
!!! TGCTAAATGATTTTTCATAA+AGG - chr2_1:64306179-64306198 None:intergenic 20.0%
!!! TAAAGGGTTAAATATGTTTT+TGG + chr2_1:64307046-64307065 Msa0217480:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG - chr2_1:64307507-64307526 None:intergenic 20.0%
!!! TAAAATTTTCCTTCAACTTT+TGG + chr2_1:64307106-64307125 Msa0217480:intron 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr2_1:64307134-64307153 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr2_1:64307137-64307156 Msa0217480:intron 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG + chr2_1:64307415-64307434 Msa0217480:intron 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG + chr2_1:64307416-64307435 Msa0217480:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG + chr2_1:64307507-64307526 Msa0217480:intron 20.0%
!! CTGTAAAAAAAAAATCTACA+TGG - chr2_1:64307704-64307723 None:intergenic 20.0%
!! TGTTTACATTAATATATACG+TGG + chr2_1:64307887-64307906 Msa0217480:intron 20.0%
!!! TTTTTCCATAATAGATCTTT+AGG - chr2_1:64308062-64308081 None:intergenic 20.0%
!! TTATATCAAGTTTCATTTAG+GGG + chr2_1:64308252-64308271 Msa0217480:three_prime_UTR 20.0%
!!! TATATCATGTTTTTATTTGG+TGG + chr2_1:64308278-64308297 Msa0217480:three_prime_UTR 20.0%
!!! ATATCATGTTTTTATTTGGT+GGG + chr2_1:64308279-64308298 Msa0217480:three_prime_UTR 20.0%
!! AAATAGACTCAAAAAAATCA+TGG + chr2_1:64306101-64306120 Msa0217480:CDS 20.0%
!! AATAGACTCAAAAAAATCAT+GGG + chr2_1:64306102-64306121 Msa0217480:CDS 20.0%
!!! AATGATTTTTCATAAAGGAA+AGG - chr2_1:64306174-64306193 None:intergenic 20.0%
!!! TGCTAAATGATTTTTCATAA+AGG - chr2_1:64306179-64306198 None:intergenic 20.0%
!!! TAAAGGGTTAAATATGTTTT+TGG + chr2_1:64307046-64307065 Msa0217480:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG - chr2_1:64307507-64307526 None:intergenic 20.0%
!!! TAAAATTTTCCTTCAACTTT+TGG + chr2_1:64307106-64307125 Msa0217480:intron 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr2_1:64307134-64307153 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr2_1:64307137-64307156 Msa0217480:intron 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG + chr2_1:64307415-64307434 Msa0217480:intron 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG + chr2_1:64307416-64307435 Msa0217480:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG + chr2_1:64307507-64307526 Msa0217480:intron 20.0%
!! CTGTAAAAAAAAAATCTACA+TGG - chr2_1:64307704-64307723 None:intergenic 20.0%
!! TGTTTACATTAATATATACG+TGG + chr2_1:64307887-64307906 Msa0217480:intron 20.0%
!!! TTTTTCCATAATAGATCTTT+AGG - chr2_1:64308062-64308081 None:intergenic 20.0%
!! TTATATCAAGTTTCATTTAG+GGG + chr2_1:64308252-64308271 Msa0217480:three_prime_UTR 20.0%
!!! TATATCATGTTTTTATTTGG+TGG + chr2_1:64308278-64308297 Msa0217480:three_prime_UTR 20.0%
!!! ATATCATGTTTTTATTTGGT+GGG + chr2_1:64308279-64308298 Msa0217480:three_prime_UTR 20.0%
! ACAACAACAAAAGAAAGAAA+TGG + chr2_1:64306042-64306061 Msa0217480:exon 25.0%
!!! CTCACTGTAATTTTAATATG+CGG - chr2_1:64306204-64306223 None:intergenic 25.0%
! AAAGGATTCATTTGTATAGA+AGG - chr2_1:64306452-64306471 None:intergenic 25.0%
! ATGGTATATAAAGGAAATCA+AGG + chr2_1:64306637-64306656 Msa0217480:intron 25.0%
!! ATGTGCTTAACTTTTAACAA+TGG + chr2_1:64306809-64306828 Msa0217480:intron 25.0%
!! TGTGCTTAACTTTTAACAAT+GGG + chr2_1:64306810-64306829 Msa0217480:intron 25.0%
!! CATATTTAACCCTTTAAAAG+AGG - chr2_1:64307042-64307061 None:intergenic 25.0%
! CGAAAAGTTGACATATTTAT+AGG - chr2_1:64307506-64307525 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr2_1:64307476-64307495 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr2_1:64307475-64307494 None:intergenic 25.0%
! TTATAGGGATTAAAAGTTGA+AGG + chr2_1:64307462-64307481 Msa0217480:intron 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr2_1:64307475-64307494 Msa0217480:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr2_1:64307476-64307495 Msa0217480:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG + chr2_1:64307506-64307525 Msa0217480:intron 25.0%
!! AAGAGGGTTAAATATGTTTT+TGG - chr2_1:64307534-64307553 None:intergenic 25.0%
!!! ATAATGTTAATGAGGTATTG+AGG + chr2_1:64307654-64307673 Msa0217480:intron 25.0%
!! TATTTTCCCTAACGTTAATA+TGG - chr2_1:64307745-64307764 None:intergenic 25.0%
! GTTTACTAAAGTTGTAACTA+TGG + chr2_1:64308098-64308117 Msa0217480:three_prime_UTR 25.0%
! ACAACAACAAAAGAAAGAAA+TGG + chr2_1:64306042-64306061 Msa0217480:exon 25.0%
!!! CTCACTGTAATTTTAATATG+CGG - chr2_1:64306204-64306223 None:intergenic 25.0%
! AAAGGATTCATTTGTATAGA+AGG - chr2_1:64306452-64306471 None:intergenic 25.0%
! ATGGTATATAAAGGAAATCA+AGG + chr2_1:64306637-64306656 Msa0217480:intron 25.0%
!! ATGTGCTTAACTTTTAACAA+TGG + chr2_1:64306809-64306828 Msa0217480:intron 25.0%
!! TGTGCTTAACTTTTAACAAT+GGG + chr2_1:64306810-64306829 Msa0217480:intron 25.0%
!! CATATTTAACCCTTTAAAAG+AGG - chr2_1:64307042-64307061 None:intergenic 25.0%
! CGAAAAGTTGACATATTTAT+AGG - chr2_1:64307506-64307525 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr2_1:64307476-64307495 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr2_1:64307475-64307494 None:intergenic 25.0%
! TTATAGGGATTAAAAGTTGA+AGG + chr2_1:64307462-64307481 Msa0217480:intron 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr2_1:64307475-64307494 Msa0217480:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr2_1:64307476-64307495 Msa0217480:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG + chr2_1:64307506-64307525 Msa0217480:intron 25.0%
!! AAGAGGGTTAAATATGTTTT+TGG - chr2_1:64307534-64307553 None:intergenic 25.0%
!!! ATAATGTTAATGAGGTATTG+AGG + chr2_1:64307654-64307673 Msa0217480:intron 25.0%
!! TATTTTCCCTAACGTTAATA+TGG - chr2_1:64307745-64307764 None:intergenic 25.0%
! GTTTACTAAAGTTGTAACTA+TGG + chr2_1:64308098-64308117 Msa0217480:three_prime_UTR 25.0%
ACAACAAAAGAAAGAAATGG+AGG + chr2_1:64306045-64306064 Msa0217480:exon 30.0%
CAACAAAAGAAAGAAATGGA+GGG + chr2_1:64306046-64306065 Msa0217480:exon 30.0%
!! AAGTTTTGTCAAAATCACAG+TGG + chr2_1:64306284-64306303 Msa0217480:intron 30.0%
! AAATTGGTCTAAAATACTGC+AGG + chr2_1:64306394-64306413 Msa0217480:intron 30.0%
GAATCCTTTCTTTCAAGAAT+TGG + chr2_1:64306463-64306482 Msa0217480:CDS 30.0%
TATATACCATTTGCATGTCT+TGG - chr2_1:64306627-64306646 None:intergenic 30.0%
GACATGCAAATGGTATATAA+AGG + chr2_1:64306628-64306647 Msa0217480:intron 30.0%
! ACACTTTAGATGGATTTGTA+TGG - chr2_1:64306672-64306691 None:intergenic 30.0%
! CCATCTAAAGTGTTTGTATT+CGG + chr2_1:64306679-64306698 Msa0217480:intron 30.0%
ATATGATACATAGTGGTGTT+TGG - chr2_1:64306708-64306727 None:intergenic 30.0%
GCATATAGTATAAGCAAACA+AGG - chr2_1:64306734-64306753 None:intergenic 30.0%
AAGCATGAACCCATTTAATT+TGG - chr2_1:64306965-64306984 None:intergenic 30.0%
AAGTGAACCATATTAACGTT+AGG + chr2_1:64307735-64307754 Msa0217480:intron 30.0%
AGTGAACCATATTAACGTTA+GGG + chr2_1:64307736-64307755 Msa0217480:intron 30.0%
ATATATACGTGGCTATATTC+AGG + chr2_1:64307898-64307917 Msa0217480:intron 30.0%
!! TATGGCTTTAATTTCCATCT+TGG - chr2_1:64307933-64307952 None:intergenic 30.0%
CAAAAAAAGAAAGGTAGGTA+TGG - chr2_1:64307951-64307970 None:intergenic 30.0%
CCATTCAAAAAAAGAAAGGT+AGG - chr2_1:64307956-64307975 None:intergenic 30.0%
!!! CCTACCTTTCTTTTTTTGAA+TGG + chr2_1:64307953-64307972 Msa0217480:CDS 30.0%
!!! ACCTTTCTTTTTTTGAATGG+AGG + chr2_1:64307956-64307975 Msa0217480:CDS 30.0%
TCCTCCATTCAAAAAAAGAA+AGG - chr2_1:64307960-64307979 None:intergenic 30.0%
ATCCTGATGAAATAAGGAAA+AGG + chr2_1:64308008-64308027 Msa0217480:CDS 30.0%
TCCTGATGAAATAAGGAAAA+GGG + chr2_1:64308009-64308028 Msa0217480:CDS 30.0%
TCCTTCCTAAAGATCTATTA+TGG + chr2_1:64308054-64308073 Msa0217480:exon 30.0%
! TCCATAATAGATCTTTAGGA+AGG - chr2_1:64308058-64308077 None:intergenic 30.0%
TGGAAAAAGTGAAATGAACA+AGG + chr2_1:64308074-64308093 Msa0217480:three_prime_UTR 30.0%
GTCCAAAACTATATAGTTCT+AGG - chr2_1:64308124-64308143 None:intergenic 30.0%
ACAACAAAAGAAAGAAATGG+AGG + chr2_1:64306045-64306064 Msa0217480:exon 30.0%
CAACAAAAGAAAGAAATGGA+GGG + chr2_1:64306046-64306065 Msa0217480:exon 30.0%
!! AAGTTTTGTCAAAATCACAG+TGG + chr2_1:64306284-64306303 Msa0217480:intron 30.0%
! AAATTGGTCTAAAATACTGC+AGG + chr2_1:64306394-64306413 Msa0217480:intron 30.0%
GAATCCTTTCTTTCAAGAAT+TGG + chr2_1:64306463-64306482 Msa0217480:CDS 30.0%
TATATACCATTTGCATGTCT+TGG - chr2_1:64306627-64306646 None:intergenic 30.0%
GACATGCAAATGGTATATAA+AGG + chr2_1:64306628-64306647 Msa0217480:intron 30.0%
! ACACTTTAGATGGATTTGTA+TGG - chr2_1:64306672-64306691 None:intergenic 30.0%
! CCATCTAAAGTGTTTGTATT+CGG + chr2_1:64306679-64306698 Msa0217480:intron 30.0%
ATATGATACATAGTGGTGTT+TGG - chr2_1:64306708-64306727 None:intergenic 30.0%
GCATATAGTATAAGCAAACA+AGG - chr2_1:64306734-64306753 None:intergenic 30.0%
AAGCATGAACCCATTTAATT+TGG - chr2_1:64306965-64306984 None:intergenic 30.0%
AAGTGAACCATATTAACGTT+AGG + chr2_1:64307735-64307754 Msa0217480:intron 30.0%
AGTGAACCATATTAACGTTA+GGG + chr2_1:64307736-64307755 Msa0217480:intron 30.0%
ATATATACGTGGCTATATTC+AGG + chr2_1:64307898-64307917 Msa0217480:intron 30.0%
!! TATGGCTTTAATTTCCATCT+TGG - chr2_1:64307933-64307952 None:intergenic 30.0%
CAAAAAAAGAAAGGTAGGTA+TGG - chr2_1:64307951-64307970 None:intergenic 30.0%
CCATTCAAAAAAAGAAAGGT+AGG - chr2_1:64307956-64307975 None:intergenic 30.0%
!!! CCTACCTTTCTTTTTTTGAA+TGG + chr2_1:64307953-64307972 Msa0217480:CDS 30.0%
!!! ACCTTTCTTTTTTTGAATGG+AGG + chr2_1:64307956-64307975 Msa0217480:CDS 30.0%
TCCTCCATTCAAAAAAAGAA+AGG - chr2_1:64307960-64307979 None:intergenic 30.0%
ATCCTGATGAAATAAGGAAA+AGG + chr2_1:64308008-64308027 Msa0217480:CDS 30.0%
TCCTGATGAAATAAGGAAAA+GGG + chr2_1:64308009-64308028 Msa0217480:CDS 30.0%
TCCTTCCTAAAGATCTATTA+TGG + chr2_1:64308054-64308073 Msa0217480:exon 30.0%
! TCCATAATAGATCTTTAGGA+AGG - chr2_1:64308058-64308077 None:intergenic 30.0%
TGGAAAAAGTGAAATGAACA+AGG + chr2_1:64308074-64308093 Msa0217480:three_prime_UTR 30.0%
GTCCAAAACTATATAGTTCT+AGG - chr2_1:64308124-64308143 None:intergenic 30.0%
ACTTACTGGGTAACTTTGAT+TGG - chr2_1:64306149-64306168 None:intergenic 35.0%
TAAAGGAAAGGAGACTTACT+GGG - chr2_1:64306162-64306181 None:intergenic 35.0%
ATAAAGGAAAGGAGACTTAC+TGG - chr2_1:64306163-64306182 None:intergenic 35.0%
!! TGGTTCATTTCTCTGCTTTT+TGG + chr2_1:64306420-64306439 Msa0217480:CDS 35.0%
GATGCCAATTCTTGAAAGAA+AGG - chr2_1:64306470-64306489 None:intergenic 35.0%
AGATGTTCTCTTTCTCACAT+TGG + chr2_1:64306499-64306518 Msa0217480:CDS 35.0%
CCGAATACAAACACTTTAGA+TGG - chr2_1:64306682-64306701 None:intergenic 35.0%
! AAGGAGCATATGATACATAG+TGG - chr2_1:64306715-64306734 None:intergenic 35.0%
GATCTAGAAACTGAAATTGC+AGG - chr2_1:64306917-64306936 None:intergenic 35.0%
TACAAACTACCACCAATAGT+TGG - chr2_1:64306988-64307007 None:intergenic 35.0%
! ATTGCTTCTGCCTCTTTTAA+AGG + chr2_1:64307029-64307048 Msa0217480:intron 35.0%
! TTGCTTCTGCCTCTTTTAAA+GGG + chr2_1:64307030-64307049 Msa0217480:intron 35.0%
TTATAGGGACCAAAAGTTGA+AGG - chr2_1:64307118-64307137 None:intergenic 35.0%
TGGTTGTTACACTGGAAAAA+TGG - chr2_1:64307684-64307703 None:intergenic 35.0%
AATCTACATGGTTGTTACAC+TGG - chr2_1:64307692-64307711 None:intergenic 35.0%
AACTCTTGTGGACAAAATTG+TGG + chr2_1:64307979-64307998 Msa0217480:CDS 35.0%
ACTCTTGTGGACAAAATTGT+GGG + chr2_1:64307980-64307999 Msa0217480:CDS 35.0%
GTGCAAATCCTGATGAAATA+AGG + chr2_1:64308002-64308021 Msa0217480:CDS 35.0%
!! ACCCTTTTCCTTATTTCATC+AGG - chr2_1:64308013-64308032 None:intergenic 35.0%
! GGCCTAGAACTATATAGTTT+TGG + chr2_1:64308119-64308138 Msa0217480:three_prime_UTR 35.0%
!!! CTATATAGTTTTGGACCTAC+TGG + chr2_1:64308128-64308147 Msa0217480:three_prime_UTR 35.0%
ACTTACTGGGTAACTTTGAT+TGG - chr2_1:64306149-64306168 None:intergenic 35.0%
TAAAGGAAAGGAGACTTACT+GGG - chr2_1:64306162-64306181 None:intergenic 35.0%
ATAAAGGAAAGGAGACTTAC+TGG - chr2_1:64306163-64306182 None:intergenic 35.0%
!! TGGTTCATTTCTCTGCTTTT+TGG + chr2_1:64306420-64306439 Msa0217480:CDS 35.0%
GATGCCAATTCTTGAAAGAA+AGG - chr2_1:64306470-64306489 None:intergenic 35.0%
AGATGTTCTCTTTCTCACAT+TGG + chr2_1:64306499-64306518 Msa0217480:CDS 35.0%
CCGAATACAAACACTTTAGA+TGG - chr2_1:64306682-64306701 None:intergenic 35.0%
! AAGGAGCATATGATACATAG+TGG - chr2_1:64306715-64306734 None:intergenic 35.0%
GATCTAGAAACTGAAATTGC+AGG - chr2_1:64306917-64306936 None:intergenic 35.0%
TACAAACTACCACCAATAGT+TGG - chr2_1:64306988-64307007 None:intergenic 35.0%
! ATTGCTTCTGCCTCTTTTAA+AGG + chr2_1:64307029-64307048 Msa0217480:intron 35.0%
! TTGCTTCTGCCTCTTTTAAA+GGG + chr2_1:64307030-64307049 Msa0217480:intron 35.0%
TTATAGGGACCAAAAGTTGA+AGG - chr2_1:64307118-64307137 None:intergenic 35.0%
TGGTTGTTACACTGGAAAAA+TGG - chr2_1:64307684-64307703 None:intergenic 35.0%
AATCTACATGGTTGTTACAC+TGG - chr2_1:64307692-64307711 None:intergenic 35.0%
AACTCTTGTGGACAAAATTG+TGG + chr2_1:64307979-64307998 Msa0217480:CDS 35.0%
ACTCTTGTGGACAAAATTGT+GGG + chr2_1:64307980-64307999 Msa0217480:CDS 35.0%
GTGCAAATCCTGATGAAATA+AGG + chr2_1:64308002-64308021 Msa0217480:CDS 35.0%
!! ACCCTTTTCCTTATTTCATC+AGG - chr2_1:64308013-64308032 None:intergenic 35.0%
! GGCCTAGAACTATATAGTTT+TGG + chr2_1:64308119-64308138 Msa0217480:three_prime_UTR 35.0%
!!! CTATATAGTTTTGGACCTAC+TGG + chr2_1:64308128-64308147 Msa0217480:three_prime_UTR 35.0%
! GTCTAAAATACTGCAGGTTG+TGG + chr2_1:64306400-64306419 Msa0217480:intron 40.0%
TCTCTTTCTCACATTGGATG+TGG + chr2_1:64306505-64306524 Msa0217480:CDS 40.0%
ATTGGATGTGGATGAGGTTA+AGG + chr2_1:64306517-64306536 Msa0217480:CDS 40.0%
CATTTGCATGTCTTGGCAAA+TGG - chr2_1:64306620-64306639 None:intergenic 40.0%
CATTTGCCAAGACATGCAAA+TGG + chr2_1:64306618-64306637 Msa0217480:intron 40.0%
TTCATGCTTCCAACTATTGG+TGG + chr2_1:64306976-64306995 Msa0217480:intron 40.0%
! GGCTTTAATTTCCATCTTGG+AGG - chr2_1:64307930-64307949 None:intergenic 40.0%
TTTGAATGGAGGAACTCTTG+TGG + chr2_1:64307967-64307986 Msa0217480:CDS 40.0%
AAACACACACAACAACCAGT+AGG - chr2_1:64308146-64308165 None:intergenic 40.0%
! TTTGTGCGTGCATTTTTGTG+TGG + chr2_1:64308423-64308442 Msa0217480:three_prime_UTR 40.0%
! GTCTAAAATACTGCAGGTTG+TGG + chr2_1:64306400-64306419 Msa0217480:intron 40.0%
TCTCTTTCTCACATTGGATG+TGG + chr2_1:64306505-64306524 Msa0217480:CDS 40.0%
ATTGGATGTGGATGAGGTTA+AGG + chr2_1:64306517-64306536 Msa0217480:CDS 40.0%
CATTTGCATGTCTTGGCAAA+TGG - chr2_1:64306620-64306639 None:intergenic 40.0%
CATTTGCCAAGACATGCAAA+TGG + chr2_1:64306618-64306637 Msa0217480:intron 40.0%
TTCATGCTTCCAACTATTGG+TGG + chr2_1:64306976-64306995 Msa0217480:intron 40.0%
! GGCTTTAATTTCCATCTTGG+AGG - chr2_1:64307930-64307949 None:intergenic 40.0%
TTTGAATGGAGGAACTCTTG+TGG + chr2_1:64307967-64307986 Msa0217480:CDS 40.0%
AAACACACACAACAACCAGT+AGG - chr2_1:64308146-64308165 None:intergenic 40.0%
! TTTGTGCGTGCATTTTTGTG+TGG + chr2_1:64308423-64308442 Msa0217480:three_prime_UTR 40.0%
TCTCACATTGGATGTGGATG+AGG + chr2_1:64306511-64306530 Msa0217480:CDS 45.0%
GGGTTCATGCTTCCAACTAT+TGG + chr2_1:64306973-64306992 Msa0217480:intron 45.0%
TCAGGAAATTGCCTCCAAGA+TGG + chr2_1:64307916-64307935 Msa0217480:intron 45.0%
TCTCACATTGGATGTGGATG+AGG + chr2_1:64306511-64306530 Msa0217480:CDS 45.0%
GGGTTCATGCTTCCAACTAT+TGG + chr2_1:64306973-64306992 Msa0217480:intron 45.0%
TCAGGAAATTGCCTCCAAGA+TGG + chr2_1:64307916-64307935 Msa0217480:intron 45.0%
!!! ATGAATTTTTATATTTTTTA+AGG - chr2_1:64307292-64307311 None:intergenic 5.0%
!!! AAAAAATTCTAAATTTTTTT+TGG + chr2_1:64307331-64307350 Msa0217480:intron 5.0%
!! TAATAAAATAATTTAAAAGA+GGG - chr2_1:64307550-64307569 None:intergenic 5.0%
!! ATAATAAAATAATTTAAAAG+AGG - chr2_1:64307551-64307570 None:intergenic 5.0%
!!! TATAATAAATTATTCATTTT+TGG + chr2_1:64307596-64307615 Msa0217480:intron 5.0%
!!! ATGAATTTTTATATTTTTTA+AGG - chr2_1:64307292-64307311 None:intergenic 5.0%
!!! AAAAAATTCTAAATTTTTTT+TGG + chr2_1:64307331-64307350 Msa0217480:intron 5.0%
!! TAATAAAATAATTTAAAAGA+GGG - chr2_1:64307550-64307569 None:intergenic 5.0%
!! ATAATAAAATAATTTAAAAG+AGG - chr2_1:64307551-64307570 None:intergenic 5.0%
!!! TATAATAAATTATTCATTTT+TGG + chr2_1:64307596-64307615 Msa0217480:intron 5.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 64306039 64308474 64306039 ID=Msa0217480;Name=Msa0217480
chr2_1 mRNA 64306039 64308474 64306039 ID=Msa0217480-mRNA-1;Parent=Msa0217480;Name=Msa0217480-mRNA-1;_AED=0.13;_eAED=0.13;_QI=22|1|1|1|1|1|3|411|122
chr2_1 exon 64306039 64306162 64306039 ID=Msa0217480-mRNA-1:exon:17839;Parent=Msa0217480-mRNA-1
chr2_1 exon 64306416 64306538 64306416 ID=Msa0217480-mRNA-1:exon:17840;Parent=Msa0217480-mRNA-1
chr2_1 exon 64307920 64308474 64307920 ID=Msa0217480-mRNA-1:exon:17841;Parent=Msa0217480-mRNA-1
chr2_1 five_prime_UTR 64306039 64306060 64306039 ID=Msa0217480-mRNA-1:five_prime_utr;Parent=Msa0217480-mRNA-1
chr2_1 CDS 64306061 64306162 64306061 ID=Msa0217480-mRNA-1:cds;Parent=Msa0217480-mRNA-1
chr2_1 CDS 64306416 64306538 64306416 ID=Msa0217480-mRNA-1:cds;Parent=Msa0217480-mRNA-1
chr2_1 CDS 64307920 64308063 64307920 ID=Msa0217480-mRNA-1:cds;Parent=Msa0217480-mRNA-1
chr2_1 three_prime_UTR 64308064 64308474 64308064 ID=Msa0217480-mRNA-1:three_prime_utr;Parent=Msa0217480-mRNA-1
Gene Sequence

>Msa0217480

ATGGAGGGCCAAAAATATCTCAAAAATTCTAAGGTTATCAAAATAGACTCAAAAAAATCATGGGAACATTACATCTCTTATGCTACCAATCAAAGTTACCCAGTTGTGGTTCATTTCTCTGCTTTTTGGTGTGCTCCTTCTATACAAATGAATCCTTTCTTTCAAGAATTGGCATCAAACTATCAAGATGTTCTCTTTCTCACATTGGATGTGGATGAGGTTAAGGAAATTGCCTCCAAGATGGAAATTAAAGCCATACCTACCTTTCTTTTTTTGAATGGAGGAACTCTTGTGGACAAAATTGTGGGTGCAAATCCTGATGAAATAAGGAAAAGGGTTGATCATTTTATTCAATCAACTCCTTCCTAA

Protein sequence

>Msa0217480

MEGQKYLKNSKVIKIDSKKSWEHYISYATNQSYPVVVHFSAFWCAPSIQMNPFFQELASNYQDVLFLTLDVDEVKEIASKMEIKAIPTFLFLNGGTLVDKIVGANPDEIRKRVDHFIQSTPS*