AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0332920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0332920 MtrunA17_Chr2g0316011 94.958 238 2 1 5 232 26 263 8.22e-167 460
Msa0332920 MtrunA17_Chr2g0325591 75.319 235 47 2 5 228 25 259 4.68e-131 370
Msa0332920 MtrunA17_Chr8g0379011 80.275 218 33 1 5 212 25 242 1.99e-129 365
Msa0332920 MtrunA17_Chr2g0283791 74.449 227 46 3 5 220 23 248 1.11e-124 353
Msa0332920 MtrunA17_Chr5g0418971 73.543 223 49 1 5 217 25 247 3.27e-121 345
Msa0332920 MtrunA17_Chr4g0043141 69.068 236 44 2 6 212 1 236 2.44e-114 327
Msa0332920 MtrunA17_Chr5g0426551 65.532 235 68 3 5 227 26 259 8.91e-107 308
Msa0332920 MtrunA17_Chr3g0132301 65.652 230 67 2 5 222 26 255 2.31e-106 307
Msa0332920 MtrunA17_Chr3g0133161 63.594 217 66 2 5 208 29 245 5.64e-95 278
Msa0332920 MtrunA17_Chr1g0164601 48.848 217 93 5 5 207 29 241 4.38e-60 189
Msa0332920 MtrunA17_Chr3g0082111 48.387 217 94 5 5 207 59 271 5.03e-58 185
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0332920 AT2G42590.2 71.610 236 56 2 5 229 25 260 4.08e-122 347
Msa0332920 AT2G42590.1 71.308 237 56 2 5 229 25 261 1.77e-121 346
Msa0332920 AT2G42590.3 71.308 237 56 2 5 229 25 261 2.05e-121 346
Msa0332920 AT1G26480.1 74.771 218 45 1 5 212 28 245 7.35e-121 345
Msa0332920 AT1G22300.2 72.851 221 50 1 5 215 23 243 4.97e-120 342
Msa0332920 AT1G22300.1 70.940 234 56 3 5 228 23 254 5.79e-120 342
Msa0332920 AT1G34760.2 72.523 222 51 1 5 216 23 244 1.18e-119 341
Msa0332920 AT1G34760.1 72.523 222 51 1 5 216 23 244 1.22e-119 341
Msa0332920 AT1G22300.3 73.853 218 47 1 5 212 23 240 2.88e-119 340
Msa0332920 AT5G38480.1 67.521 234 64 3 5 226 22 255 1.65e-109 315
Msa0332920 AT5G38480.3 70.089 224 55 3 5 216 22 245 1.33e-108 313
Msa0332920 AT5G38480.2 70.089 224 55 3 5 216 22 245 1.33e-108 313
Msa0332920 AT3G02520.1 64.255 235 72 3 5 227 23 257 1.33e-104 303
Msa0332920 AT3G02520.2 64.255 235 72 3 5 227 23 257 1.33e-104 303
Msa0332920 AT1G78300.1 62.869 237 76 3 5 229 23 259 3.34e-103 300
Msa0332920 AT4G09000.1 62.447 237 77 2 5 229 28 264 1.18e-101 296
Msa0332920 AT1G35160.1 61.506 239 79 3 5 230 29 267 2.12e-101 295
Msa0332920 AT1G35160.2 65.278 216 63 2 5 208 29 244 2.47e-99 291
Msa0332920 AT4G09000.2 65.741 216 62 2 5 208 28 243 5.01e-99 291
Msa0332920 AT5G65430.1 64.840 219 64 2 5 210 25 243 8.07e-99 288
Msa0332920 AT5G65430.2 64.545 220 65 2 5 211 25 244 1.38e-98 287
Msa0332920 AT5G16050.1 61.603 237 78 3 5 229 25 260 5.55e-98 286
Msa0332920 AT5G16050.2 61.603 237 78 3 5 229 25 260 5.55e-98 286
Msa0332920 AT5G65430.3 64.977 217 63 2 5 208 25 241 1.19e-97 285
Msa0332920 AT5G10450.1 62.557 219 69 2 5 210 25 243 4.04e-97 283
Msa0332920 AT5G10450.2 62.273 220 70 2 5 211 25 244 5.73e-97 283
Msa0332920 AT5G10450.3 62.673 217 68 2 5 208 25 241 2.70e-96 282
Msa0332920 AT5G10450.4 62.673 217 68 2 5 208 25 241 5.78e-96 281
Msa0332920 AT1G78220.1 47.887 213 100 2 5 206 23 235 5.83e-67 207
Msa0332920 AT1G22290.2 51.366 183 75 4 5 184 27 198 2.33e-50 164
Msa0332920 AT1G22290.1 51.111 180 74 4 5 181 27 195 4.03e-50 162

Find 112 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCGAGACAACCTTACTTTA+TGG 0.114948 2_4:+50283894 Msa0332920:CDS
CCTTGTAAGAATCTTCATTT+AGG 0.161442 2_4:-50283847 None:intergenic
AAAATTCTAGAGAACTAAAT+TGG 0.173446 2_4:-50280163 None:intergenic
AAGTAAAGTAATGTGATTTA+TGG 0.176142 2_4:+50279959 Msa0332920:five_prime_UTR
TATGTTTGGGTCATTATATT+AGG 0.193909 2_4:+50280265 Msa0332920:five_prime_UTR
AGGAGATTATTATCGGTATT+TGG 0.208721 2_4:+50281018 Msa0332920:CDS
AAATCATGAATGTTATATTT+TGG 0.227050 2_4:-50285007 None:intergenic
AATGAGTAAGAAAGAGAAAA+TGG 0.232475 2_4:-50279835 None:intergenic
ATGTTTGGGTCATTATATTA+GGG 0.250262 2_4:+50280266 Msa0332920:five_prime_UTR
GTGTCGAACACCTTCAATTC+AGG 0.269356 2_4:+50280497 Msa0332920:five_prime_UTR
ACCTTCAAGAATCCATTTAC+TGG 0.275962 2_4:+50284983 Msa0332920:three_prime_UTR
ATTGAATGTTAAGCGTATTA+AGG 0.286248 2_4:+50280755 Msa0332920:CDS
AGTATCTTACCACCATCTTC+TGG 0.289512 2_4:-50283929 None:intergenic
ATATTAGGGGAACTAATTTC+TGG 0.294320 2_4:+50280280 Msa0332920:five_prime_UTR
TACCGGGGACAAATTATGTT+TGG 0.321608 2_4:+50280251 Msa0332920:five_prime_UTR
TTTGAGCAGAGAGAAATTTC+AGG 0.331959 2_4:+50279614 Msa0332920:five_prime_UTR
TGTCCGTATCCGTGCTTCAT+AGG 0.342603 2_4:+50280113 Msa0332920:five_prime_UTR
ATCTTCATCTTGACCGCTCT+TGG 0.357030 2_4:-50284703 None:intergenic
CGGTCAAGATGAAGATGAAT+TGG 0.358772 2_4:+50284710 Msa0332920:CDS
CTTGTAAGAATCTTCATTTA+GGG 0.359911 2_4:-50283846 None:intergenic
ACACCTTCAATTCAGGGCTT+TGG 0.378954 2_4:+50280504 Msa0332920:five_prime_UTR
GGCTTGCTTTGCCAGGTGGC+AGG 0.380270 2_4:-50283795 None:intergenic
TCAGGGCTTTGGTGTTTCAT+AGG 0.395614 2_4:+50280515 Msa0332920:five_prime_UTR
ATATCTAAACTAGTCTCTTC+CGG 0.409827 2_4:+50280220 Msa0332920:five_prime_UTR
ACCGGGGACAAATTATGTTT+GGG 0.410875 2_4:+50280252 Msa0332920:five_prime_UTR
ACATACCCACACTCTTGTAA+TGG 0.430575 2_4:-50279934 None:intergenic
GTAGAGTGTCTGTGCTTCAT+AGG 0.431565 2_4:-50280000 None:intergenic
CATACCCACACTCTTGTAAT+GGG 0.437270 2_4:-50279933 None:intergenic
CATCAAAGGCTTGCTTTGCC+AGG 0.441295 2_4:-50283802 None:intergenic
CATAATGTCATTGCAAATGT+TGG 0.442212 2_4:-50280808 None:intergenic
GAGAGAAACTTGTTCTCTGT+TGG 0.448642 2_4:+50280648 Msa0332920:CDS
TAGAATGTGGTGTGCAGAAA+TGG 0.449705 2_4:+50280575 Msa0332920:exon
ATGAGTAAGAAAGAGAAAAT+GGG 0.449790 2_4:-50279834 None:intergenic
GAGCAGAAAGAAGAATCAAA+AGG 0.455348 2_4:+50280726 Msa0332920:CDS
TATTAGGGGAACTAATTTCT+GGG 0.457075 2_4:+50280281 Msa0332920:five_prime_UTR
ACACCAAAGCCCTGAATTGA+AGG 0.457203 2_4:-50280507 None:intergenic
TCCAGTAAATGGATTCTTGA+AGG 0.459852 2_4:-50284984 None:intergenic
ACATCCTATCCGATTGGGTC+TGG 0.460221 2_4:+50283646 Msa0332920:CDS
TGATGATGGTGTCTCAGAAC+TGG 0.464411 2_4:+50283820 Msa0332920:CDS
AGAGAAACTTGTTCTCTGTT+GGG 0.468182 2_4:+50280649 Msa0332920:CDS
GATTCAGCAATATTAGTAGA+TGG 0.470268 2_4:-50280855 None:intergenic
TTCTCCAATGTAGTGAAGCC+TGG 0.471758 2_4:+50284801 Msa0332920:three_prime_UTR
GTAGGAAAGGAGATTATTAT+CGG 0.471770 2_4:+50281011 Msa0332920:intron
GGTGGAGGCAATGAAGAAAC+TGG 0.479492 2_4:+50280596 Msa0332920:CDS
AAATTCTAGAGAACTAAATT+GGG 0.480981 2_4:-50280162 None:intergenic
TATCAGAAGTCCATAAAGTA+AGG 0.486680 2_4:-50283904 None:intergenic
TGGGTTCTAGAAGAGCTTCA+TGG 0.491874 2_4:+50280685 Msa0332920:CDS
AATGAAGAAACTGGCGAAGA+TGG 0.495701 2_4:+50280605 Msa0332920:CDS
CAGAGAGAAATTTCAGGCCA+TGG 0.502730 2_4:+50279620 Msa0332920:five_prime_UTR
CAATGGTTTGTCACACAGAC+AGG 0.502837 2_4:-50284913 None:intergenic
TGTCGAACACCTTCAATTCA+GGG 0.503553 2_4:+50280498 Msa0332920:five_prime_UTR
TCGCAACAGCTGCATGATCA+AGG 0.508740 2_4:-50283876 None:intergenic
ACCAACACATCCTATCCGAT+TGG 0.515197 2_4:+50283640 Msa0332920:CDS
AGCTGCGTCTGTGCCGTGTC+CGG 0.515937 2_4:+50280084 Msa0332920:five_prime_UTR
TAAGGAGTATAGGCAGAAGG+TGG 0.522406 2_4:+50280773 Msa0332920:CDS
AGCAGAAAGAAGAATCAAAA+GGG 0.534447 2_4:+50280727 Msa0332920:CDS
GGTCAAGATGAAGATGAATT+GGG 0.536356 2_4:+50284711 Msa0332920:CDS
CCAACACATCCTATCCGATT+GGG 0.541379 2_4:+50283641 Msa0332920:CDS
TTAAGCGTATTAAGGAGTAT+AGG 0.542232 2_4:+50280763 Msa0332920:CDS
TTACTTTCTTAAATTATCAC+CGG 0.542984 2_4:-50280429 None:intergenic
AATTTAGAGCCAGACCCAAT+CGG 0.545062 2_4:-50283655 None:intergenic
GAACAAGCTGAACGCTATGA+TGG 0.545101 2_4:+50279693 Msa0332920:five_prime_UTR
GGAGTATAGGCAGAAGGTGG+AGG 0.546524 2_4:+50280776 Msa0332920:CDS
TGTCCCCGGTATGAAAATAC+CGG 0.548133 2_4:-50280239 None:intergenic
ACTTCTGATATTCCAGAAGA+TGG 0.552034 2_4:+50283917 Msa0332920:CDS
GTCACCAGGCTTCACTACAT+TGG 0.558627 2_4:-50284805 None:intergenic
GACGTTGGTGGAAGAAGCCA+TGG 0.558760 2_4:-50279637 None:intergenic
TATTTGGCGGAATTCAAAGC+TGG 0.559761 2_4:+50281034 Msa0332920:CDS
TTCTGAGACACCATCATCAA+AGG 0.562143 2_4:-50283816 None:intergenic
AAAGTTCTCACGGACGTTGG+TGG 0.569457 2_4:-50279649 None:intergenic
GTATAGGCAGAAGGTGGAGG+CGG 0.569485 2_4:+50280779 Msa0332920:CDS
CCCAATCGGATAGGATGTGT+TGG 0.570799 2_4:-50283641 None:intergenic
AATCATGTATTACAAACCAA+TGG 0.575699 2_4:-50284930 None:intergenic
CCTAAATGAAGATTCTTACA+AGG 0.576397 2_4:+50283847 Msa0332920:CDS
AATGTGGTGTGCAGAAATGG+TGG 0.577560 2_4:+50280578 Msa0332920:exon
ACGGACACAAACACCGGACA+CGG 0.579080 2_4:-50280097 None:intergenic
CAGCCTATGAAGCACGGATA+CGG 0.580126 2_4:-50280116 None:intergenic
ATTGACCCATTACAAGAGTG+TGG 0.586176 2_4:+50279928 Msa0332920:five_prime_UTR
ATAATTTAAGAAAGTAAATG+TGG 0.587019 2_4:+50280435 Msa0332920:five_prime_UTR
AGATTATTATCGGTATTTGG+CGG 0.594864 2_4:+50281021 Msa0332920:CDS
ACCCAAACATAATTTGTCCC+CGG 0.597816 2_4:-50280253 None:intergenic
GCAAAGCAAGCCTTTGATGA+TGG 0.597901 2_4:+50283806 Msa0332920:CDS
CAAAGGCTTGCTTTGCCAGG+TGG 0.598428 2_4:-50283799 None:intergenic
TGTTGGGTACAAGAATGTGG+TGG 0.598652 2_4:+50280665 Msa0332920:CDS
TTGTAATTCATTCTCAGCAG+TGG 0.600849 2_4:-50283618 None:intergenic
CTGTCTGTGTGACAAACCAT+TGG 0.603173 2_4:+50284914 Msa0332920:three_prime_UTR
AGCTGGCGATGAAAAGAAAG+AGG 0.603332 2_4:+50281051 Msa0332920:CDS
AATTTGAATGATTTAGAATG+TGG 0.603952 2_4:+50280562 Msa0332920:exon
ACTTGTGTTGGTGTCAGACA+TGG 0.606091 2_4:+50280470 Msa0332920:five_prime_UTR
CTCTGTTGGGTACAAGAATG+TGG 0.607343 2_4:+50280662 Msa0332920:CDS
AGAGCCAGACCCAATCGGAT+AGG 0.608618 2_4:-50283650 None:intergenic
TTGACCCATTACAAGAGTGT+GGG 0.608808 2_4:+50279929 Msa0332920:five_prime_UTR
CAACATAGACAAAGTTCTCA+CGG 0.612211 2_4:-50279659 None:intergenic
TATTAAGGAGTATAGGCAGA+AGG 0.612763 2_4:+50280770 Msa0332920:CDS
GTAATTATATGTATCAGTGT+CGG 0.614985 2_4:-50280029 None:intergenic
GTTGGGTACAAGAATGTGGT+GGG 0.615161 2_4:+50280666 Msa0332920:CDS
TGTTTGGGTCATTATATTAG+GGG 0.615699 2_4:+50280267 Msa0332920:five_prime_UTR
AGATAATGAATTCACCTGAA+AGG 0.617561 2_4:+50283696 Msa0332920:CDS
ATGGAAAGCGCAACCAAGAG+CGG 0.619108 2_4:+50284690 Msa0332920:CDS
ATTAGGGGAACTAATTTCTG+GGG 0.624992 2_4:+50280282 Msa0332920:five_prime_UTR
TCGAATGTAATCACTTGTGT+TGG 0.625212 2_4:+50280458 Msa0332920:five_prime_UTR
ACGGATACGGACACAAACAC+CGG 0.627222 2_4:-50280103 None:intergenic
GATGGATGTTGAACTAAGTG+TGG 0.633294 2_4:+50280623 Msa0332920:CDS
CACACACAGCCTATGAAGCA+CGG 0.636801 2_4:-50280122 None:intergenic
GTGGTGTGCAGAAATGGTGG+AGG 0.663377 2_4:+50280581 Msa0332920:CDS
GACAAAGTTCTCACGGACGT+TGG 0.666574 2_4:-50279652 None:intergenic
TTAGGGGAACTAATTTCTGG+GGG 0.668272 2_4:+50280283 Msa0332920:five_prime_UTR
TCTGATATTCCAGAAGATGG+TGG 0.680888 2_4:+50283920 Msa0332920:CDS
ATACATCTTATAATAAAACA+CGG 0.718122 2_4:-50280880 None:intergenic
CATCTTATAATAAAACACGG+TGG 0.748656 2_4:-50280877 None:intergenic
GTTCTAGAAGAGCTTCATGG+AGG 0.750544 2_4:+50280688 Msa0332920:CDS
TTATAGTTATCATGACAGAG+CGG 0.791059 2_4:-50284745 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACAAAAAAAAAATGTTA+TGG - chr2_4:50281836-50281855 None:intergenic 10.0%
!!! TAATTTTTAAGGTAAAATAT+TGG - chr2_4:50282938-50282957 None:intergenic 10.0%
!! AAAATTGACAAAAAAAAAAA+TGG - chr2_4:50284240-50284259 None:intergenic 10.0%
!! AAACAAAATCAATAAAAATA+TGG - chr2_4:50284385-50284404 None:intergenic 10.0%
!! ATAATTTAAGAAAGTAAATG+TGG + chr2_4:50280435-50280454 Msa0332920:five_prime_UTR 15.0%
!! ATACATCTTATAATAAAACA+CGG - chr2_4:50280883-50280902 None:intergenic 15.0%
!! ACTTATTTAAATTTATCTAC+TGG - chr2_4:50281328-50281347 None:intergenic 15.0%
!!! TTTTTTTCTTATACATTAGT+GGG + chr2_4:50281663-50281682 Msa0332920:intron 15.0%
!!! AAACTTAATTTGAAACAATT+TGG - chr2_4:50281805-50281824 None:intergenic 15.0%
!! AAAAAAAAATGTTATGGTAT+TGG - chr2_4:50281830-50281849 None:intergenic 15.0%
!!! ATTTTTTTTTTGTTTAGATC+TGG + chr2_4:50281840-50281859 Msa0332920:intron 15.0%
!! AAAAATGTATAAGTAAAACT+TGG + chr2_4:50281984-50282003 Msa0332920:intron 15.0%
!!! ATAATAATATTGTCATTTCA+TGG - chr2_4:50282080-50282099 None:intergenic 15.0%
!!! TTATTTGTTGTATACAATTA+AGG + chr2_4:50282377-50282396 Msa0332920:intron 15.0%
!! TTGAAATATATTGAAGAATA+AGG - chr2_4:50283504-50283523 None:intergenic 15.0%
!! AGTTATTTATATATGTTCTT+TGG + chr2_4:50284622-50284641 Msa0332920:intron 15.0%
!!! AAATCATGAATGTTATATTT+TGG - chr2_4:50285010-50285029 None:intergenic 15.0%
!! AAGTAAAGTAATGTGATTTA+TGG + chr2_4:50279959-50279978 Msa0332920:five_prime_UTR 20.0%
!!! AAATTCTAGAGAACTAAATT+GGG - chr2_4:50280165-50280184 None:intergenic 20.0%
!!! AAAATTCTAGAGAACTAAAT+TGG - chr2_4:50280166-50280185 None:intergenic 20.0%
!!! AATTTTTGTCGAAACTAAAT+TGG + chr2_4:50280321-50280340 Msa0332920:five_prime_UTR 20.0%
!!! ATTTTTGTCGAAACTAAATT+GGG + chr2_4:50280322-50280341 Msa0332920:five_prime_UTR 20.0%
!! TTACTTTCTTAAATTATCAC+CGG - chr2_4:50280432-50280451 None:intergenic 20.0%
!!! AATTTGAATGATTTAGAATG+TGG + chr2_4:50280562-50280581 Msa0332920:exon 20.0%
!!! TTTGTTTTTGTGTTTGATTT+TGG + chr2_4:50280955-50280974 Msa0332920:intron 20.0%
!!! AGTAATTTTGAGTATTTGAT+TGG + chr2_4:50280986-50281005 Msa0332920:intron 20.0%
!! TAACTTATGAAAATAGTGTA+TGG - chr2_4:50281231-50281250 None:intergenic 20.0%
!!! ACTATTTTCATAAGTTATCT+TGG + chr2_4:50281234-50281253 Msa0332920:intron 20.0%
!!! TTAGGCATAAAAAAGTATAA+GGG - chr2_4:50281364-50281383 None:intergenic 20.0%
!! ATTTGTATCATAAGATTAGA+TGG + chr2_4:50281511-50281530 Msa0332920:intron 20.0%
!! TTTGTATCATAAGATTAGAT+GGG + chr2_4:50281512-50281531 Msa0332920:intron 20.0%
!! CACTAATGTATAAGAAAAAA+AGG - chr2_4:50281664-50281683 None:intergenic 20.0%
!!! CTTTTTTTCTTATACATTAG+TGG + chr2_4:50281662-50281681 Msa0332920:intron 20.0%
!!! ATTTGAAACAATTTGGTAAA+AGG - chr2_4:50281798-50281817 None:intergenic 20.0%
!!! AATCTATGTTTTTCACTTAA+AGG + chr2_4:50281921-50281940 Msa0332920:intron 20.0%
!! TGCTAAAAGATAAACTATTT+AGG + chr2_4:50282253-50282272 Msa0332920:intron 20.0%
!! ATAATCAAATGAAACATGAA+CGG - chr2_4:50282361-50282380 None:intergenic 20.0%
!!! TCAACTATCTTTTCATATTA+TGG - chr2_4:50282456-50282475 None:intergenic 20.0%
!!! TATGAAAAGATAGTTGATAT+AGG + chr2_4:50282459-50282478 Msa0332920:intron 20.0%
!! TGATAGAGAGATAATTTATA+GGG + chr2_4:50282616-50282635 Msa0332920:intron 20.0%
!! GAACTATAATGATGATAAAA+TGG - chr2_4:50282713-50282732 None:intergenic 20.0%
!!! TAAAATATTGGCTAAAAGAT+TGG - chr2_4:50282926-50282945 None:intergenic 20.0%
!!! CTTGATAGAATTTATCATTT+TGG + chr2_4:50283349-50283368 Msa0332920:intron 20.0%
!!! ATAGAATTTATCATTTTGGT+AGG + chr2_4:50283353-50283372 Msa0332920:intron 20.0%
!! ATATTTCAACTTAGTATTAG+TGG + chr2_4:50283515-50283534 Msa0332920:intron 20.0%
!! TTGACAAAAAAAAAAATGGT+TGG - chr2_4:50284236-50284255 None:intergenic 20.0%
!!! GAATCTTAATTTTATAACCA+TGG + chr2_4:50284473-50284492 Msa0332920:intron 20.0%
!! ATATAAATAACTCAAACCAT+AGG - chr2_4:50284614-50284633 None:intergenic 20.0%
!! ATATCTTAGAAGTTGAAAAA+AGG - chr2_4:50284830-50284849 None:intergenic 20.0%
!!! AGTTGATGTTATATTTTCAA+TGG - chr2_4:50285046-50285065 None:intergenic 20.0%
! ATGAGTAAGAAAGAGAAAAT+GGG - chr2_4:50279837-50279856 None:intergenic 25.0%
! AATGAGTAAGAAAGAGAAAA+TGG - chr2_4:50279838-50279857 None:intergenic 25.0%
! GTAATTATATGTATCAGTGT+CGG - chr2_4:50280032-50280051 None:intergenic 25.0%
! TATGTTTGGGTCATTATATT+AGG + chr2_4:50280265-50280284 Msa0332920:five_prime_UTR 25.0%
! ATGTTTGGGTCATTATATTA+GGG + chr2_4:50280266-50280285 Msa0332920:five_prime_UTR 25.0%
! ATTGAATGTTAAGCGTATTA+AGG + chr2_4:50280755-50280774 Msa0332920:CDS 25.0%
!!! ACAAAAGCATTTAATTAAGC+TGG - chr2_4:50281178-50281197 None:intergenic 25.0%
!! AAAAAGTATAAGGGTCTATT+TGG - chr2_4:50281355-50281374 None:intergenic 25.0%
!! GTTAGGCATAAAAAAGTATA+AGG - chr2_4:50281365-50281384 None:intergenic 25.0%
!! TACGAATAACTTTTATGTCA+TGG + chr2_4:50281576-50281595 Msa0332920:intron 25.0%
! GTACTAGAGAGTTTATTAAA+GGG - chr2_4:50281640-50281659 None:intergenic 25.0%
! TGTACTAGAGAGTTTATTAA+AGG - chr2_4:50281641-50281660 None:intergenic 25.0%
! TTAATGCATAACTAAGTTAC+TGG - chr2_4:50282103-50282122 None:intergenic 25.0%
! GAAAAAATGTTGTCAAATAG+CGG + chr2_4:50282275-50282294 Msa0332920:intron 25.0%
! TTATAGAATTTGACAACTCT+GGG + chr2_4:50282325-50282344 Msa0332920:intron 25.0%
! TAGAAAAAATGCATCTGATA+GGG + chr2_4:50282578-50282597 Msa0332920:intron 25.0%
! GTGATAGAGAGATAATTTAT+AGG + chr2_4:50282615-50282634 Msa0332920:intron 25.0%
! TCCTAAAAGTTCCATTATAT+TGG + chr2_4:50282880-50282899 Msa0332920:intron 25.0%
!!! ACCAATATAATGGAACTTTT+AGG - chr2_4:50282884-50282903 None:intergenic 25.0%
! TCAAAACTTGACCAATATAA+TGG - chr2_4:50282894-50282913 None:intergenic 25.0%
! AGAAAACTTGAAAAATTTCC+AGG + chr2_4:50283538-50283557 Msa0332920:intron 25.0%
! AATTACGCAAAATTACGATT+TGG - chr2_4:50283764-50283783 None:intergenic 25.0%
!!! ATTTTGCGTAATTTGTTTTC+AGG + chr2_4:50283771-50283790 Msa0332920:intron 25.0%
!!! TTTTGCGTAATTTGTTTTCA+GGG + chr2_4:50283772-50283791 Msa0332920:intron 25.0%
! CTTGTAAGAATCTTCATTTA+GGG - chr2_4:50283849-50283868 None:intergenic 25.0%
! ATAAGAAGCAACTTAATGTT+GGG - chr2_4:50284004-50284023 None:intergenic 25.0%
! AATAAGAAGCAACTTAATGT+TGG - chr2_4:50284005-50284024 None:intergenic 25.0%
!! AACATTAAGTTGCTTCTTAT+TGG + chr2_4:50284004-50284023 Msa0332920:intron 25.0%
!! TCTCTATTGTGTATCAATTT+TGG + chr2_4:50284107-50284126 Msa0332920:intron 25.0%
!! TTGTGTATCAATTTTGGATA+TGG + chr2_4:50284113-50284132 Msa0332920:intron 25.0%
! CAAGATTCATCATAATGAAT+AGG - chr2_4:50284154-50284173 None:intergenic 25.0%
!! TCTTAATTTTATAACCATGG+TGG + chr2_4:50284476-50284495 Msa0332920:intron 25.0%
! AATCATGTATTACAAACCAA+TGG - chr2_4:50284933-50284952 None:intergenic 25.0%
!!! TTATATTTTGGTCCAGTAAA+TGG - chr2_4:50284998-50285017 None:intergenic 25.0%
!!! GAAGTTTTGAACAGTGTTTA+TGG + chr2_4:50279754-50279773 Msa0332920:five_prime_UTR 30.0%
!!! AGTTCTCTAGAATTTTCTTG+CGG + chr2_4:50280170-50280189 Msa0332920:five_prime_UTR 30.0%
! ATATCTAAACTAGTCTCTTC+CGG + chr2_4:50280220-50280239 Msa0332920:five_prime_UTR 30.0%
TGTTTGGGTCATTATATTAG+GGG + chr2_4:50280267-50280286 Msa0332920:five_prime_UTR 30.0%
ATATTAGGGGAACTAATTTC+TGG + chr2_4:50280280-50280299 Msa0332920:five_prime_UTR 30.0%
TATTAGGGGAACTAATTTCT+GGG + chr2_4:50280281-50280300 Msa0332920:five_prime_UTR 30.0%
CAATCACTTCAGAAAAAGTA+CGG + chr2_4:50280383-50280402 Msa0332920:five_prime_UTR 30.0%
AGCAGAAAGAAGAATCAAAA+GGG + chr2_4:50280727-50280746 Msa0332920:CDS 30.0%
! TTAAGCGTATTAAGGAGTAT+AGG + chr2_4:50280763-50280782 Msa0332920:CDS 30.0%
CATAATGTCATTGCAAATGT+TGG - chr2_4:50280811-50280830 None:intergenic 30.0%
GATTCAGCAATATTAGTAGA+TGG - chr2_4:50280858-50280877 None:intergenic 30.0%
CATCTTATAATAAAACACGG+TGG - chr2_4:50280880-50280899 None:intergenic 30.0%
!! ATTTGATCTTGTTGTTTGTG+AGG + chr2_4:50280915-50280934 Msa0332920:intron 30.0%
TTGAGTATTTGATTGGATGT+AGG + chr2_4:50280993-50281012 Msa0332920:intron 30.0%
TATTTGATTGGATGTAGGAA+AGG + chr2_4:50280998-50281017 Msa0332920:intron 30.0%
GTAGGAAAGGAGATTATTAT+CGG + chr2_4:50281011-50281030 Msa0332920:intron 30.0%
AGGAGATTATTATCGGTATT+TGG + chr2_4:50281018-50281037 Msa0332920:CDS 30.0%
AGATTATTATCGGTATTTGG+CGG + chr2_4:50281021-50281040 Msa0332920:CDS 30.0%
ACAAGGATAGATGAACTTTA+TGG + chr2_4:50281393-50281412 Msa0332920:intron 30.0%
AAAAGTTATTCGTACATAGC+AGG - chr2_4:50281570-50281589 None:intergenic 30.0%
! ACTTTTATGTCATGGCTTAT+TGG + chr2_4:50281584-50281603 Msa0332920:intron 30.0%
! CTTTTATGTCATGGCTTATT+GGG + chr2_4:50281585-50281604 Msa0332920:intron 30.0%
! GGCAAGAAGCATAAATATAA+AGG - chr2_4:50281699-50281718 None:intergenic 30.0%
! TGGATTTATGTCCATAGTTT+TGG + chr2_4:50281737-50281756 Msa0332920:intron 30.0%
TTAGATTAGCACCAAAACTA+TGG - chr2_4:50281751-50281770 None:intergenic 30.0%
AATTGAATTGTGATGTCGTA+TGG - chr2_4:50281955-50281974 None:intergenic 30.0%
TTGGTATTGCATGAATACTT+TGG + chr2_4:50282003-50282022 Msa0332920:intron 30.0%
TGATTCTCTGTGTCATATTA+TGG + chr2_4:50282130-50282149 Msa0332920:intron 30.0%
GTTATAGAATTTGACAACTC+TGG + chr2_4:50282324-50282343 Msa0332920:intron 30.0%
CTAGAAAAAATGCATCTGAT+AGG + chr2_4:50282577-50282596 Msa0332920:intron 30.0%
AATACAATAAGCCGAGAAAT+TGG - chr2_4:50282672-50282691 None:intergenic 30.0%
ATGTAAATTCGTTTACTGGT+GGG + chr2_4:50282817-50282836 Msa0332920:intron 30.0%
! GTGAGACTGAGTAATTTTTA+AGG - chr2_4:50282949-50282968 None:intergenic 30.0%
AAAGAAAAAACATGAAAGCG+AGG - chr2_4:50283132-50283151 None:intergenic 30.0%
CAGATTGAAATCTTACTTAG+GGG - chr2_4:50283423-50283442 None:intergenic 30.0%
CCAGATTGAAATCTTACTTA+GGG - chr2_4:50283424-50283443 None:intergenic 30.0%
ACCAGATTGAAATCTTACTT+AGG - chr2_4:50283425-50283444 None:intergenic 30.0%
AGATAATGAATTCACCTGAA+AGG + chr2_4:50283696-50283715 Msa0332920:CDS 30.0%
CCTTGTAAGAATCTTCATTT+AGG - chr2_4:50283850-50283869 None:intergenic 30.0%
CCTAAATGAAGATTCTTACA+AGG + chr2_4:50283847-50283866 Msa0332920:CDS 30.0%
TATCAGAAGTCCATAAAGTA+AGG - chr2_4:50283907-50283926 None:intergenic 30.0%
ATGGTGGTAAGATACTTAAA+CGG + chr2_4:50283936-50283955 Msa0332920:intron 30.0%
!! AATAGAGATTCGTATCGATT+AGG - chr2_4:50284095-50284114 None:intergenic 30.0%
AGTGACAAGAGAAAAATGAT+TGG - chr2_4:50284269-50284288 None:intergenic 30.0%
AACATAAGTCTTCTGATTCA+CGG + chr2_4:50284447-50284466 Msa0332920:intron 30.0%
CATAATAACTATTACCACCA+TGG - chr2_4:50284493-50284512 None:intergenic 30.0%
TTATGTGCATATGACAATTG+TGG + chr2_4:50284508-50284527 Msa0332920:intron 30.0%
TATGTGCATATGACAATTGT+GGG + chr2_4:50284509-50284528 Msa0332920:intron 30.0%
ACTCAATCTTAGCTTCTTAT+TGG + chr2_4:50284565-50284584 Msa0332920:intron 30.0%
! ATCTCAAACTTTTGTTCCTA+TGG + chr2_4:50284595-50284614 Msa0332920:intron 30.0%
TTATAGTTATCATGACAGAG+CGG - chr2_4:50284748-50284767 None:intergenic 30.0%
TTTGAGCAGAGAGAAATTTC+AGG + chr2_4:50279614-50279633 Msa0332920:five_prime_UTR 35.0%
CAACATAGACAAAGTTCTCA+CGG - chr2_4:50279662-50279681 None:intergenic 35.0%
ATTAGGGGAACTAATTTCTG+GGG + chr2_4:50280282-50280301 Msa0332920:five_prime_UTR 35.0%
TCGAATGTAATCACTTGTGT+TGG + chr2_4:50280458-50280477 Msa0332920:five_prime_UTR 35.0%
! AGAGAAACTTGTTCTCTGTT+GGG + chr2_4:50280649-50280668 Msa0332920:CDS 35.0%
GAGCAGAAAGAAGAATCAAA+AGG + chr2_4:50280726-50280745 Msa0332920:CDS 35.0%
! TATTAAGGAGTATAGGCAGA+AGG + chr2_4:50280770-50280789 Msa0332920:CDS 35.0%
! TCTGTCACTTAAAGCATATC+AGG + chr2_4:50281081-50281100 Msa0332920:intron 35.0%
TAATGACTGAATCTCTTCAC+AGG + chr2_4:50281451-50281470 Msa0332920:intron 35.0%
TCACAGGCTTGTAATATATC+AGG + chr2_4:50281467-50281486 Msa0332920:intron 35.0%
GGATCTTAATGGGGATAATA+AGG - chr2_4:50281549-50281568 None:intergenic 35.0%
TACATAGCAGGATCTTAATG+GGG - chr2_4:50281558-50281577 None:intergenic 35.0%
GTACATAGCAGGATCTTAAT+GGG - chr2_4:50281559-50281578 None:intergenic 35.0%
ATTTATGCTTCTTGCCTTGT+TGG + chr2_4:50281703-50281722 Msa0332920:intron 35.0%
GAAGATGTTTGTTCCTAAGA+GGG - chr2_4:50282031-50282050 None:intergenic 35.0%
TGAAGATGTTTGTTCCTAAG+AGG - chr2_4:50282032-50282051 None:intergenic 35.0%
TATGACACAGAGAATCATGA+TGG - chr2_4:50282127-50282146 None:intergenic 35.0%
TTCTCTGTGTCATATTATGG+AGG + chr2_4:50282133-50282152 Msa0332920:intron 35.0%
TTAACCTGTTGTAGACGATT+TGG + chr2_4:50282158-50282177 Msa0332920:intron 35.0%
! AACACTGAGCTCAATTTTCT+TGG - chr2_4:50282524-50282543 None:intergenic 35.0%
GTCACAAATCTTTCCCAATT+TGG + chr2_4:50282644-50282663 Msa0332920:intron 35.0%
CGAGAAATTGGTACCAAATT+GGG - chr2_4:50282660-50282679 None:intergenic 35.0%
CCAATTTGGTACCAATTTCT+CGG + chr2_4:50282658-50282677 Msa0332920:intron 35.0%
AAAATGGTCACTAGTGCAAA+AGG - chr2_4:50282697-50282716 None:intergenic 35.0%
TCGCATGTAAATTCGTTTAC+TGG + chr2_4:50282813-50282832 Msa0332920:intron 35.0%
CATGTAAATTCGTTTACTGG+TGG + chr2_4:50282816-50282835 Msa0332920:intron 35.0%
CCCTAAGTAAGATTTCAATC+TGG + chr2_4:50283421-50283440 Msa0332920:intron 35.0%
! TTTAAAACCTATGCCAACCA+AGG - chr2_4:50283453-50283472 None:intergenic 35.0%
CAACAGTTGAAATCTTTGTC+TGG - chr2_4:50283565-50283584 None:intergenic 35.0%
TTGTAATTCATTCTCAGCAG+TGG - chr2_4:50283621-50283640 None:intergenic 35.0%
ATGAATTCACCTGAAAGGTA+CGG + chr2_4:50283701-50283720 Msa0332920:intron 35.0%
ACTTCTGATATTCCAGAAGA+TGG + chr2_4:50283917-50283936 Msa0332920:CDS 35.0%
!! CTTCTTATTGGTGCTAATCA+TGG + chr2_4:50284016-50284035 Msa0332920:intron 35.0%
AGAAGCTAAGATTGAGTGAT+TGG - chr2_4:50284562-50284581 None:intergenic 35.0%
! CTTCCAATTTTCCATTTCAG+AGG + chr2_4:50284659-50284678 Msa0332920:intron 35.0%
!!! CATTTTTTGGTCCTCTGAAA+TGG - chr2_4:50284673-50284692 None:intergenic 35.0%
CATTTCAGAGGACCAAAAAA+TGG + chr2_4:50284671-50284690 Msa0332920:intron 35.0%
GGTCAAGATGAAGATGAATT+GGG + chr2_4:50284711-50284730 Msa0332920:CDS 35.0%
ACCTTCAAGAATCCATTTAC+TGG + chr2_4:50284983-50285002 Msa0332920:three_prime_UTR 35.0%
! TCCAGTAAATGGATTCTTGA+AGG - chr2_4:50284987-50285006 None:intergenic 35.0%
ATTGACCCATTACAAGAGTG+TGG + chr2_4:50279928-50279947 Msa0332920:five_prime_UTR 40.0%
! TTGACCCATTACAAGAGTGT+GGG + chr2_4:50279929-50279948 Msa0332920:five_prime_UTR 40.0%
CATACCCACACTCTTGTAAT+GGG - chr2_4:50279936-50279955 None:intergenic 40.0%
ACATACCCACACTCTTGTAA+TGG - chr2_4:50279937-50279956 None:intergenic 40.0%
! CTCTTCCGGTATTTTCATAC+CGG + chr2_4:50280234-50280253 Msa0332920:five_prime_UTR 40.0%
! TCTTCCGGTATTTTCATACC+GGG + chr2_4:50280235-50280254 Msa0332920:five_prime_UTR 40.0%
TACCGGGGACAAATTATGTT+TGG + chr2_4:50280251-50280270 Msa0332920:five_prime_UTR 40.0%
ACCGGGGACAAATTATGTTT+GGG + chr2_4:50280252-50280271 Msa0332920:five_prime_UTR 40.0%
! ACCCAAACATAATTTGTCCC+CGG - chr2_4:50280256-50280275 None:intergenic 40.0%
! TTAGGGGAACTAATTTCTGG+GGG + chr2_4:50280283-50280302 Msa0332920:five_prime_UTR 40.0%
AATTATCACCGGTGTTTACG+CGG - chr2_4:50280421-50280440 None:intergenic 40.0%
TGTCGAACACCTTCAATTCA+GGG + chr2_4:50280498-50280517 Msa0332920:five_prime_UTR 40.0%
TAGAATGTGGTGTGCAGAAA+TGG + chr2_4:50280575-50280594 Msa0332920:exon 40.0%
AATGAAGAAACTGGCGAAGA+TGG + chr2_4:50280605-50280624 Msa0332920:CDS 40.0%
GATGGATGTTGAACTAAGTG+TGG + chr2_4:50280623-50280642 Msa0332920:CDS 40.0%
! GAGAGAAACTTGTTCTCTGT+TGG + chr2_4:50280648-50280667 Msa0332920:CDS 40.0%
TATTTGGCGGAATTCAAAGC+TGG + chr2_4:50281034-50281053 Msa0332920:CDS 40.0%
TCGTAACATGAGTTTGCCTT+AGG + chr2_4:50281138-50281157 Msa0332920:intron 40.0%
AGTTTGCCTTAGGTCATGTT+TGG + chr2_4:50281148-50281167 Msa0332920:intron 40.0%
GGTTATCCAAACATGACCTA+AGG - chr2_4:50281157-50281176 None:intergenic 40.0%
CGTACATAGCAGGATCTTAA+TGG - chr2_4:50281560-50281579 None:intergenic 40.0%
CCAAATGAAGTTCTCCAACA+AGG - chr2_4:50281720-50281739 None:intergenic 40.0%
CCTTGTTGGAGAACTTCATT+TGG + chr2_4:50281717-50281736 Msa0332920:intron 40.0%
GAATTGTGATGTCGTATGGA+AGG - chr2_4:50281951-50281970 None:intergenic 40.0%
AAATGAAACATGAACGGCCA+AGG - chr2_4:50282355-50282374 None:intergenic 40.0%
!! TGCTGAAGTTCTGAAAACAG+AGG + chr2_4:50282549-50282568 Msa0332920:intron 40.0%
!! GCTGAAGTTCTGAAAACAGA+GGG + chr2_4:50282550-50282569 Msa0332920:intron 40.0%
CCGAGAAATTGGTACCAAAT+TGG - chr2_4:50282661-50282680 None:intergenic 40.0%
! TTTTATGACCTTACAGCCAC+TGG + chr2_4:50282780-50282799 Msa0332920:intron 40.0%
TTTATGACCTTACAGCCACT+GGG + chr2_4:50282781-50282800 Msa0332920:intron 40.0%
TGTCTGTTGAAAACCAGTTG+GGG - chr2_4:50283070-50283089 None:intergenic 40.0%
GTGTCTGTTGAAAACCAGTT+GGG - chr2_4:50283071-50283090 None:intergenic 40.0%
GCACAAGTACAGATGAACTT+GGG - chr2_4:50283155-50283174 None:intergenic 40.0%
TGCACAAGTACAGATGAACT+TGG - chr2_4:50283156-50283175 None:intergenic 40.0%
TCTGTACTTGTGCATTCTCA+TGG + chr2_4:50283162-50283181 Msa0332920:intron 40.0%
TCAGTGCTAATTGTGAGTCA+TGG + chr2_4:50283240-50283259 Msa0332920:intron 40.0%
TTGAAATCTTTGTCTGGACC+TGG - chr2_4:50283559-50283578 None:intergenic 40.0%
! AATTTAGAGCCAGACCCAAT+CGG - chr2_4:50283658-50283677 None:intergenic 40.0%
! TGAATTCACCTGAAAGGTAC+GGG + chr2_4:50283702-50283721 Msa0332920:intron 40.0%
GTTTGTGTTAATGAGAACCG+AGG + chr2_4:50283732-50283751 Msa0332920:intron 40.0%
!! TTCTGAGACACCATCATCAA+AGG - chr2_4:50283819-50283838 None:intergenic 40.0%
TGCGAGACAACCTTACTTTA+TGG + chr2_4:50283894-50283913 Msa0332920:CDS 40.0%
TCTGATATTCCAGAAGATGG+TGG + chr2_4:50283920-50283939 Msa0332920:CDS 40.0%
AGTATCTTACCACCATCTTC+TGG - chr2_4:50283932-50283951 None:intergenic 40.0%
!! GGTCCTCTGAAATGGAAAAT+TGG - chr2_4:50284665-50284684 None:intergenic 40.0%
!!! TGGTTGCGCTTTCCATTTTT+TGG - chr2_4:50284686-50284705 None:intergenic 40.0%
CGGTCAAGATGAAGATGAAT+TGG + chr2_4:50284710-50284729 Msa0332920:CDS 40.0%
GAAGTTGAAAAAAGGTCACC+AGG - chr2_4:50284822-50284841 None:intergenic 40.0%
CAGAGAGAAATTTCAGGCCA+TGG + chr2_4:50279620-50279639 Msa0332920:five_prime_UTR 45.0%
GAACAAGCTGAACGCTATGA+TGG + chr2_4:50279693-50279712 Msa0332920:five_prime_UTR 45.0%
! GTAGAGTGTCTGTGCTTCAT+AGG - chr2_4:50280003-50280022 None:intergenic 45.0%
! CTTCCGGTATTTTCATACCG+GGG + chr2_4:50280236-50280255 Msa0332920:five_prime_UTR 45.0%
TGTCCCCGGTATGAAAATAC+CGG - chr2_4:50280242-50280261 None:intergenic 45.0%
!! ACTTGTGTTGGTGTCAGACA+TGG + chr2_4:50280470-50280489 Msa0332920:five_prime_UTR 45.0%
GTGTCGAACACCTTCAATTC+AGG + chr2_4:50280497-50280516 Msa0332920:five_prime_UTR 45.0%
ACACCTTCAATTCAGGGCTT+TGG + chr2_4:50280504-50280523 Msa0332920:five_prime_UTR 45.0%
ACACCAAAGCCCTGAATTGA+AGG - chr2_4:50280510-50280529 None:intergenic 45.0%
!! TCAGGGCTTTGGTGTTTCAT+AGG + chr2_4:50280515-50280534 Msa0332920:five_prime_UTR 45.0%
AATGTGGTGTGCAGAAATGG+TGG + chr2_4:50280578-50280597 Msa0332920:exon 45.0%
CTCTGTTGGGTACAAGAATG+TGG + chr2_4:50280662-50280681 Msa0332920:CDS 45.0%
TGTTGGGTACAAGAATGTGG+TGG + chr2_4:50280665-50280684 Msa0332920:CDS 45.0%
GTTGGGTACAAGAATGTGGT+GGG + chr2_4:50280666-50280685 Msa0332920:CDS 45.0%
!! TGGGTTCTAGAAGAGCTTCA+TGG + chr2_4:50280685-50280704 Msa0332920:CDS 45.0%
!! GTTCTAGAAGAGCTTCATGG+AGG + chr2_4:50280688-50280707 Msa0332920:CDS 45.0%
! TAAGGAGTATAGGCAGAAGG+TGG + chr2_4:50280773-50280792 Msa0332920:CDS 45.0%
AGCTGGCGATGAAAAGAAAG+AGG + chr2_4:50281051-50281070 Msa0332920:CDS 45.0%
TGGCGATGAAAAGAAAGAGG+TGG + chr2_4:50281054-50281073 Msa0332920:intron 45.0%
CGATGAAAAGAAAGAGGTGG+CGG + chr2_4:50281057-50281076 Msa0332920:intron 45.0%
TCCAAAACAGTCTCCCAACA+AGG + chr2_4:50281296-50281315 Msa0332920:intron 45.0%
CCAAAACAGTCTCCCAACAA+GGG + chr2_4:50281297-50281316 Msa0332920:intron 45.0%
CTACTGGCATAACCCTTGTT+GGG - chr2_4:50281312-50281331 None:intergenic 45.0%
TCTACTGGCATAACCCTTGT+TGG - chr2_4:50281313-50281332 None:intergenic 45.0%
TATCCTTGTCAGCAGTGGTT+AGG - chr2_4:50281382-50281401 None:intergenic 45.0%
TCATCTATCCTTGTCAGCAG+TGG - chr2_4:50281387-50281406 None:intergenic 45.0%
!! GAATACTTTGGTGCCCTCTT+AGG + chr2_4:50282015-50282034 Msa0332920:intron 45.0%
TCAAATAGCGGCTAATGTGC+CGG + chr2_4:50282287-50282306 Msa0332920:intron 45.0%
AGCAGATTAAGCACCATGCA+AGG + chr2_4:50282485-50282504 Msa0332920:intron 45.0%
AGATTAAGCACCATGCAAGG+AGG + chr2_4:50282488-50282507 Msa0332920:intron 45.0%
!! ACCATGCAAGGAGGTATTTG+TGG + chr2_4:50282497-50282516 Msa0332920:intron 45.0%
ACCACAAATACCTCCTTGCA+TGG - chr2_4:50282501-50282520 None:intergenic 45.0%
!! AAGTTCTGAAAACAGAGGGC+AGG + chr2_4:50282554-50282573 Msa0332920:intron 45.0%
ATCTGATAGGGAGCAGTTGT+GGG + chr2_4:50282590-50282609 Msa0332920:intron 45.0%
CAATCCTACGATCTAACTCG+CGG - chr2_4:50282755-50282774 None:intergenic 45.0%
GCTTGCAAGATTGCTGAGAT+CGG + chr2_4:50282843-50282862 Msa0332920:intron 45.0%
TGTTGAAAACCAGTTGGGGA+GGG - chr2_4:50283066-50283085 None:intergenic 45.0%
GGTGTCTGTTGAAAACCAGT+TGG - chr2_4:50283072-50283091 None:intergenic 45.0%
TGACTGCAATGAAGCAGTAG+AGG - chr2_4:50283093-50283112 None:intergenic 45.0%
TGCATTCTCATGGCATCTAG+TGG + chr2_4:50283172-50283191 Msa0332920:intron 45.0%
GCATTCTCATGGCATCTAGT+GGG + chr2_4:50283173-50283192 Msa0332920:intron 45.0%
CATTCTCATGGCATCTAGTG+GGG + chr2_4:50283174-50283193 Msa0332920:intron 45.0%
TTTCAATCTGGTGACCACCT+TGG + chr2_4:50283433-50283452 Msa0332920:intron 45.0%
AAAACCTATGCCAACCAAGG+TGG - chr2_4:50283450-50283469 None:intergenic 45.0%
ACCAACACATCCTATCCGAT+TGG + chr2_4:50283640-50283659 Msa0332920:CDS 45.0%
CCAACACATCCTATCCGATT+GGG + chr2_4:50283641-50283660 Msa0332920:CDS 45.0%
GCAAAGCAAGCCTTTGATGA+TGG + chr2_4:50283806-50283825 Msa0332920:CDS 45.0%
!! TGATGATGGTGTCTCAGAAC+TGG + chr2_4:50283820-50283839 Msa0332920:CDS 45.0%
CTGATATGTGCATGTGTGTG+TGG - chr2_4:50283965-50283984 None:intergenic 45.0%
ATCTTCATCTTGACCGCTCT+TGG - chr2_4:50284706-50284725 None:intergenic 45.0%
TTCTCCAATGTAGTGAAGCC+TGG + chr2_4:50284801-50284820 Msa0332920:three_prime_UTR 45.0%
! CAATGGTTTGTCACACAGAC+AGG - chr2_4:50284916-50284935 None:intergenic 45.0%
CTGTCTGTGTGACAAACCAT+TGG + chr2_4:50284914-50284933 Msa0332920:three_prime_UTR 45.0%
!!! AATTTATTAAAATAGATTTT+GGG - chr2_4:50284193-50284212 None:intergenic 5.0%
!!! TAATTTATTAAAATAGATTT+TGG - chr2_4:50284194-50284213 None:intergenic 5.0%
AAAGTTCTCACGGACGTTGG+TGG - chr2_4:50279652-50279671 None:intergenic 50.0%
GACAAAGTTCTCACGGACGT+TGG - chr2_4:50279655-50279674 None:intergenic 50.0%
ACGGATACGGACACAAACAC+CGG - chr2_4:50280106-50280125 None:intergenic 50.0%
TGTCCGTATCCGTGCTTCAT+AGG + chr2_4:50280113-50280132 Msa0332920:five_prime_UTR 50.0%
CAGCCTATGAAGCACGGATA+CGG - chr2_4:50280119-50280138 None:intergenic 50.0%
CACACACAGCCTATGAAGCA+CGG - chr2_4:50280125-50280144 None:intergenic 50.0%
GGTGGAGGCAATGAAGAAAC+TGG + chr2_4:50280596-50280615 Msa0332920:CDS 50.0%
! CCCTTGTTGGGAGACTGTTT+TGG - chr2_4:50281300-50281319 None:intergenic 50.0%
ATGCCTAACCACTGCTGACA+AGG + chr2_4:50281376-50281395 Msa0332920:intron 50.0%
GTGGCCAAATCGTCTACAAC+AGG - chr2_4:50282165-50282184 None:intergenic 50.0%
GTTCAAAGTCAGCTGTGCTC+TGG - chr2_4:50282223-50282242 None:intergenic 50.0%
ATAACGCCACAGCACTGTAC+CGG - chr2_4:50282309-50282328 None:intergenic 50.0%
TGACAACTCTGGGTTTGCCT+TGG + chr2_4:50282335-50282354 Msa0332920:intron 50.0%
CATCTGATAGGGAGCAGTTG+TGG + chr2_4:50282589-50282608 Msa0332920:intron 50.0%
AAGACCGCGAGTTAGATCGT+AGG + chr2_4:50282748-50282767 Msa0332920:intron 50.0%
CGCGAGTTAGATCGTAGGAT+TGG + chr2_4:50282753-50282772 Msa0332920:intron 50.0%
CTGTTGAAAACCAGTTGGGG+AGG - chr2_4:50283067-50283086 None:intergenic 50.0%
CATGAAAGCGAGGAGCTTGT+TGG - chr2_4:50283122-50283141 None:intergenic 50.0%
TCAGGGGGTTAGGTGTCAAT+GGG + chr2_4:50283217-50283236 Msa0332920:intron 50.0%
AATCTGGTGACCACCTTGGT+TGG + chr2_4:50283437-50283456 Msa0332920:intron 50.0%
CCCAATCGGATAGGATGTGT+TGG - chr2_4:50283644-50283663 None:intergenic 50.0%
ACATCCTATCCGATTGGGTC+TGG + chr2_4:50283646-50283665 Msa0332920:CDS 50.0%
! CATTTTCGCCCGTACCTTTC+AGG - chr2_4:50283713-50283732 None:intergenic 50.0%
! TTACGATTTGGCAGCAGCCT+CGG - chr2_4:50283752-50283771 None:intergenic 50.0%
! CATCAAAGGCTTGCTTTGCC+AGG - chr2_4:50283805-50283824 None:intergenic 50.0%
TCGCAACAGCTGCATGATCA+AGG - chr2_4:50283879-50283898 None:intergenic 50.0%
! ATGGAAAGCGCAACCAAGAG+CGG + chr2_4:50284690-50284709 Msa0332920:CDS 50.0%
GTCACCAGGCTTCACTACAT+TGG - chr2_4:50284808-50284827 None:intergenic 50.0%
! GACGTTGGTGGAAGAAGCCA+TGG - chr2_4:50279640-50279659 None:intergenic 55.0%
ACGGACACAAACACCGGACA+CGG - chr2_4:50280100-50280119 None:intergenic 55.0%
CATCACTGCCGCGTAAACAC+CGG + chr2_4:50280410-50280429 Msa0332920:intron 55.0%
GTGGTGTGCAGAAATGGTGG+AGG + chr2_4:50280581-50280600 Msa0332920:CDS 55.0%
GGAGTATAGGCAGAAGGTGG+AGG + chr2_4:50280776-50280795 Msa0332920:CDS 55.0%
GTATAGGCAGAAGGTGGAGG+CGG + chr2_4:50280779-50280798 Msa0332920:CDS 55.0%
CAGCTGCGGTTTGACAACAG+TGG - chr2_4:50282184-50282203 None:intergenic 55.0%
TTGTCAAACCGCAGCTGCAG+CGG + chr2_4:50282187-50282206 Msa0332920:intron 55.0%
! AATGTGCCGGTACAGTGCTG+TGG + chr2_4:50282300-50282319 Msa0332920:intron 55.0%
TGATAGGGAGCAGTTGTGGG+TGG + chr2_4:50282593-50282612 Msa0332920:intron 55.0%
TAGATCGCCCAGTGGCTGTA+AGG - chr2_4:50282791-50282810 None:intergenic 55.0%
ATGCGAGTTAGATCGCCCAG+TGG - chr2_4:50282799-50282818 None:intergenic 55.0%
GAAAACCAGTTGGGGAGGGA+GGG - chr2_4:50283062-50283081 None:intergenic 55.0%
TGAAAACCAGTTGGGGAGGG+AGG - chr2_4:50283063-50283082 None:intergenic 55.0%
CATGGCATCTAGTGGGGTTG+CGG + chr2_4:50283180-50283199 Msa0332920:intron 55.0%
GTCAGGGGGTTAGGTGTCAA+TGG + chr2_4:50283216-50283235 Msa0332920:intron 55.0%
GTGACCACCTTGGTTGGCAT+AGG + chr2_4:50283443-50283462 Msa0332920:intron 55.0%
AGAGCCAGACCCAATCGGAT+AGG - chr2_4:50283653-50283672 None:intergenic 55.0%
! CAAAGGCTTGCTTTGCCAGG+TGG - chr2_4:50283802-50283821 None:intergenic 55.0%
CTATAGCACCGCTGCAGCTG+CGG - chr2_4:50282198-50282217 None:intergenic 60.0%
GCATCTAGTGGGGTTGCGGT+AGG + chr2_4:50283184-50283203 Msa0332920:intron 60.0%
TCTAGTGGGGTTGCGGTAGG+TGG + chr2_4:50283187-50283206 Msa0332920:intron 60.0%
GGGTTGCGGTAGGTGGTAGT+GGG + chr2_4:50283194-50283213 Msa0332920:intron 60.0%
!! CGGTAGGTGGTAGTGGGTCA+GGG + chr2_4:50283200-50283219 Msa0332920:intron 60.0%
!! GGTAGGTGGTAGTGGGTCAG+GGG + chr2_4:50283201-50283220 Msa0332920:intron 60.0%
!! GTAGGTGGTAGTGGGTCAGG+GGG + chr2_4:50283202-50283221 Msa0332920:intron 60.0%
!! TGGTAGTGGGTCAGGGGGTT+AGG + chr2_4:50283207-50283226 Msa0332920:intron 60.0%
!! TGTTTTCAGGGCCTGCCACC+TGG + chr2_4:50283784-50283803 Msa0332920:intron 60.0%
AGCTGCGTCTGTGCCGTGTC+CGG + chr2_4:50280084-50280103 Msa0332920:five_prime_UTR 65.0%
ACCAGTTGGGGAGGGAGGGA+GGG - chr2_4:50283058-50283077 None:intergenic 65.0%
AACCAGTTGGGGAGGGAGGG+AGG - chr2_4:50283059-50283078 None:intergenic 65.0%
GGGGTTGCGGTAGGTGGTAG+TGG + chr2_4:50283193-50283212 Msa0332920:intron 65.0%
!! GCGGTAGGTGGTAGTGGGTC+AGG + chr2_4:50283199-50283218 Msa0332920:intron 65.0%
! GGCTTGCTTTGCCAGGTGGC+AGG - chr2_4:50283798-50283817 None:intergenic 65.0%
GAGGGAGGGAGGGAGGGAGA+GGG - chr2_4:50283012-50283031 None:intergenic 70.0%
AGGGAGAGGGAGGGAGGGAG+GGG - chr2_4:50283039-50283058 None:intergenic 70.0%
GAGGGAGAGGGAGGGAGGGA+GGG - chr2_4:50283040-50283059 None:intergenic 70.0%
GAGGGAGGGAGAGGGAGGGA+GGG - chr2_4:50283044-50283063 None:intergenic 70.0%
GAGGGAGGGAGGGAGAGGGA+GGG - chr2_4:50283008-50283027 None:intergenic 70.0%
TGGGGAGGGAGGGAGGGAGA+GGG - chr2_4:50283052-50283071 None:intergenic 70.0%
TTGGGGAGGGAGGGAGGGAG+AGG - chr2_4:50283053-50283072 None:intergenic 70.0%
TCCCTCCCTCCCTCCCCAAC+TGG + chr2_4:50283054-50283073 Msa0332920:intron 70.0%
GGAGGGAGGGAGGGAGGGAG+AGG - chr2_4:50283013-50283032 None:intergenic 75.0%
GGGAGGGAGGGAGGGAGGGA+GGG - chr2_4:50283014-50283033 None:intergenic 75.0%
GAGGGGGAGGGAGGGAGGGA+GGG - chr2_4:50283022-50283041 None:intergenic 75.0%
GAGGGAGGGGGAGGGAGGGA+GGG - chr2_4:50283026-50283045 None:intergenic 75.0%
GAGGGAGGGAGGGGGAGGGA+GGG - chr2_4:50283030-50283049 None:intergenic 75.0%
GAGGGAGGGAGGGAGGGGGA+GGG - chr2_4:50283034-50283053 None:intergenic 75.0%
AGAGGGAGGGAGGGAGGGGG+AGG - chr2_4:50283035-50283054 None:intergenic 75.0%
GGGAGAGGGAGGGAGGGAGG+GGG - chr2_4:50283038-50283057 None:intergenic 75.0%
GGAGGGAGAGGGAGGGAGGG+AGG - chr2_4:50283041-50283060 None:intergenic 75.0%
GGAGGGAGGGAGAGGGAGGG+AGG - chr2_4:50283045-50283064 None:intergenic 75.0%
GGAGGGAGGGAGGGAGAGGG+AGG - chr2_4:50283009-50283028 None:intergenic 75.0%
! GGGGAGGGAGGGAGGGAGGG+AGG - chr2_4:50283019-50283038 None:intergenic 80.0%
! GGAGGGGGAGGGAGGGAGGG+AGG - chr2_4:50283023-50283042 None:intergenic 80.0%
! GGAGGGAGGGGGAGGGAGGG+AGG - chr2_4:50283027-50283046 None:intergenic 80.0%
! GGAGGGAGGGAGGGGGAGGG+AGG - chr2_4:50283031-50283050 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 50279579 50285069 50279579 ID=Msa0332920;Name=Msa0332920
chr2_4 mRNA 50279579 50285069 50279579 ID=Msa0332920-mRNA-1;Parent=Msa0332920;Name=Msa0332920-mRNA-1;_AED=0.05;_eAED=0.05;_QI=980|0.8|0.83|1|0.8|0.66|6|329|232
chr2_4 exon 50279579 50280405 50279579 ID=Msa0332920-mRNA-1:exon:15012;Parent=Msa0332920-mRNA-1
chr2_4 exon 50280426 50280898 50280426 ID=Msa0332920-mRNA-1:exon:15013;Parent=Msa0332920-mRNA-1
chr2_4 exon 50281015 50281072 50281015 ID=Msa0332920-mRNA-1:exon:15014;Parent=Msa0332920-mRNA-1
chr2_4 exon 50283608 50283717 50283608 ID=Msa0332920-mRNA-1:exon:15015;Parent=Msa0332920-mRNA-1
chr2_4 exon 50283793 50283941 50283793 ID=Msa0332920-mRNA-1:exon:15016;Parent=Msa0332920-mRNA-1
chr2_4 exon 50284679 50285069 50284679 ID=Msa0332920-mRNA-1:exon:15017;Parent=Msa0332920-mRNA-1
chr2_4 five_prime_UTR 50279579 50280405 50279579 ID=Msa0332920-mRNA-1:five_prime_utr;Parent=Msa0332920-mRNA-1
chr2_4 five_prime_UTR 50280426 50280578 50280426 ID=Msa0332920-mRNA-1:five_prime_utr;Parent=Msa0332920-mRNA-1
chr2_4 CDS 50280579 50280898 50280579 ID=Msa0332920-mRNA-1:cds;Parent=Msa0332920-mRNA-1
chr2_4 CDS 50281015 50281072 50281015 ID=Msa0332920-mRNA-1:cds;Parent=Msa0332920-mRNA-1
chr2_4 CDS 50283608 50283717 50283608 ID=Msa0332920-mRNA-1:cds;Parent=Msa0332920-mRNA-1
chr2_4 CDS 50283793 50283941 50283793 ID=Msa0332920-mRNA-1:cds;Parent=Msa0332920-mRNA-1
chr2_4 CDS 50284679 50284740 50284679 ID=Msa0332920-mRNA-1:cds;Parent=Msa0332920-mRNA-1
chr2_4 three_prime_UTR 50284741 50285069 50284741 ID=Msa0332920-mRNA-1:three_prime_utr;Parent=Msa0332920-mRNA-1
Gene Sequence

>Msa0332920

ATGTGGTGTGCAGAAATGGTGGAGGCAATGAAGAAACTGGCGAAGATGGATGTTGAACTAAGTGTGGAAGAGAGAAACTTGTTCTCTGTTGGGTACAAGAATGTGGTGGGTTCTAGAAGAGCTTCATGGAGGATCTTATCATCAATTGAGCAGAAAGAAGAATCAAAAGGGAATGAATTGAATGTTAAGCGTATTAAGGAGTATAGGCAGAAGGTGGAGGCGGAGCTTTCCAACATTTGCAATGACATTATGATTATTATTGATGAGCATCTTATTCCATCTACTAATATTGCTGAATCCACCGTGTTTTATTATAAGATGAAAGGAGATTATTATCGGTATTTGGCGGAATTCAAAGCTGGCGATGAAAAGAAAGAGACAGCTTCTGCCACTGCTGAGAATGAATTACAACCAACACATCCTATCCGATTGGGTCTGGCTCTAAATTTCTCAGTGTTTTATTATGAGATAATGAATTCACCTGAAAGGGCCTGCCACCTGGCAAAGCAAGCCTTTGATGATGGTGTCTCAGAACTGGATACCCTAAATGAAGATTCTTACAAGGACAGTACCTTGATCATGCAGCTGTTGCGAGACAACCTTACTTTATGGACTTCTGATATTCCAGAAGATGGTGAGGACCAAAAAATGGAAAGCGCAACCAAGAGCGGTCAAGATGAAGATGAATTGGGTCGCTAA

Protein sequence

>Msa0332920

MWCAEMVEAMKKLAKMDVELSVEERNLFSVGYKNVVGSRRASWRILSSIEQKEESKGNELNVKRIKEYRQKVEAELSNICNDIMIIIDEHLIPSTNIAESTVFYYKMKGDYYRYLAEFKAGDEKKETASATAENELQPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDDGVSELDTLNEDSYKDSTLIMQLLRDNLTLWTSDIPEDGEDQKMESATKSGQDEDELGR*