AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0342400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0342400 MtrunA17_Chr2g0320631 98.450 387 6 0 1 387 1 387 0.0 792
Msa0342400 MtrunA17_Chr4g0027671 80.157 383 70 3 9 387 8 388 0.0 627
Msa0342400 MtrunA17_Chr1g0179611 69.767 387 102 4 7 387 11 388 0.0 568
Msa0342400 MtrunA17_Chr5g0407121 48.108 370 129 3 19 387 17 324 1.35e-118 351
Msa0342400 MtrunA17_Chr8g0370321 47.425 369 129 4 19 387 17 320 8.74e-114 339
Msa0342400 MtrunA17_Chr4g0058241 37.342 158 92 4 25 182 84 234 5.31e-27 111
Msa0342400 MtrunA17_Chr3g0116701 36.943 157 92 4 25 181 80 229 1.26e-25 107
Msa0342400 MtrunA17_Chr3g0116701 36.842 95 57 2 284 378 228 319 1.40e-12 68.6
Msa0342400 MtrunA17_Chr3g0139371 35.393 178 102 5 4 181 45 209 4.93e-25 105
Msa0342400 MtrunA17_Chr3g0139371 45.902 61 33 0 318 378 238 298 1.15e-12 68.9
Msa0342400 MtrunA17_Chr3g0123491 32.911 158 99 4 25 182 79 229 3.90e-23 100
Msa0342400 MtrunA17_Chr3g0123491 40.984 61 36 0 318 378 260 320 3.72e-11 64.3
Msa0342400 MtrunA17_Chr8g0369241 38.298 141 81 3 40 179 139 274 2.78e-21 96.3
Msa0342400 MtrunA17_Chr8g0369241 48.571 70 33 1 309 375 273 342 5.23e-13 70.9
Msa0342400 MtrunA17_Chr1g0210061 32.919 161 95 6 25 179 596 749 1.37e-15 78.6
Msa0342400 MtrunA17_Chr5g0437131 37.162 148 84 3 38 181 401 543 3.79e-15 77.4
Msa0342400 MtrunA17_Chr6g0480541 34.459 148 88 3 38 181 896 1038 6.36e-15 76.6
Msa0342400 MtrunA17_Chr6g0480541 43.333 60 34 0 316 375 1043 1102 1.64e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0342400 AT5G22840.1 72.135 384 89 3 7 387 12 380 0.0 548
Msa0342400 AT3G53030.1 69.029 381 105 2 7 387 9 376 0.0 538
Msa0342400 AT3G44850.1 71.646 395 100 4 1 387 1 391 0.0 535
Msa0342400 AT4G35500.1 48.238 369 128 4 21 387 19 326 8.69e-118 349
Msa0342400 AT4G35500.2 45.676 370 137 5 21 387 19 327 1.37e-108 326
Msa0342400 AT2G17530.2 63.483 178 65 0 21 198 19 196 2.09e-80 251
Msa0342400 AT2G17530.2 42.657 143 74 2 253 387 183 325 6.14e-30 118
Msa0342400 AT2G17530.1 59.896 192 74 1 21 212 19 207 5.24e-79 250
Msa0342400 AT2G17530.1 42.657 143 74 2 253 387 183 325 4.45e-29 117
Msa0342400 AT2G17530.3 59.896 192 74 1 21 212 19 207 5.24e-79 250
Msa0342400 AT2G17530.3 42.657 143 74 2 253 387 183 325 4.45e-29 117
Msa0342400 AT4G24740.4 34.171 199 116 6 25 216 84 274 8.82e-27 109
Msa0342400 AT4G24740.3 34.171 199 116 6 25 216 84 274 1.80e-26 108
Msa0342400 AT4G24740.3 45.902 61 33 0 318 378 263 323 1.36e-11 65.9
Msa0342400 AT4G24740.7 34.171 199 116 6 25 216 46 236 2.69e-26 109
Msa0342400 AT4G24740.7 45.902 61 33 0 318 378 225 285 1.37e-11 65.9
Msa0342400 AT4G24740.1 34.171 199 116 6 25 216 84 274 3.82e-26 109
Msa0342400 AT4G24740.1 45.902 61 33 0 318 378 263 323 1.37e-11 66.2
Msa0342400 AT4G32660.2 37.107 159 93 4 23 181 55 206 6.26e-25 104
Msa0342400 AT4G32660.2 47.541 61 32 0 318 378 235 295 6.96e-12 66.6
Msa0342400 AT4G32660.1 37.107 159 93 4 23 181 55 206 7.56e-25 105
Msa0342400 AT4G32660.1 47.541 61 32 0 318 378 235 295 8.62e-12 66.6
Msa0342400 AT4G32660.3 37.107 159 93 3 23 181 47 198 7.99e-25 105
Msa0342400 AT4G32660.3 47.541 61 32 0 318 378 227 287 9.00e-12 66.6
Msa0342400 AT3G53570.1 36.943 157 92 4 25 181 101 250 3.81e-24 103
Msa0342400 AT3G53570.1 34.737 95 61 1 284 378 249 342 1.59e-11 66.2
Msa0342400 AT3G53570.4 36.943 157 92 4 25 181 101 250 3.81e-24 103
Msa0342400 AT3G53570.4 34.737 95 61 1 284 378 249 342 1.59e-11 66.2
Msa0342400 AT3G53570.2 36.943 157 92 4 25 181 101 250 3.81e-24 103
Msa0342400 AT3G53570.2 34.737 95 61 1 284 378 249 342 1.59e-11 66.2
Msa0342400 AT3G53570.3 36.943 157 92 4 25 181 87 236 4.76e-24 103
Msa0342400 AT3G53570.3 34.737 95 61 1 284 378 235 328 1.65e-11 65.9
Msa0342400 AT3G53570.5 36.943 157 92 4 25 181 87 236 4.76e-24 103
Msa0342400 AT3G53570.5 34.737 95 61 1 284 378 235 328 1.65e-11 65.9
Msa0342400 AT4G24740.5 38.411 151 86 4 46 196 1 144 5.54e-24 99.8
Msa0342400 AT4G24740.5 45.902 61 33 0 318 378 160 220 6.60e-12 65.5
Msa0342400 AT4G24740.6 38.411 151 86 4 46 196 1 144 1.51e-23 100
Msa0342400 AT4G24740.6 45.902 61 33 0 318 378 160 220 9.43e-12 65.9
Msa0342400 AT4G24740.9 38.411 151 86 4 46 196 1 144 1.51e-23 100
Msa0342400 AT4G24740.9 45.902 61 33 0 318 378 160 220 9.43e-12 65.9
Msa0342400 AT4G24740.2 38.411 151 86 4 46 196 1 144 1.51e-23 100
Msa0342400 AT4G24740.2 45.902 61 33 0 318 378 160 220 9.43e-12 65.9
Msa0342400 AT5G35980.1 37.584 149 87 3 40 187 122 265 1.34e-22 100
Msa0342400 AT5G35980.1 48.611 72 34 1 307 375 253 324 5.58e-13 71.2
Msa0342400 AT5G35980.3 37.584 149 87 3 40 187 87 230 1.50e-22 100
Msa0342400 AT5G35980.3 48.611 72 34 1 307 375 218 289 7.27e-13 70.9
Msa0342400 AT5G35980.2 37.584 149 87 3 40 187 122 265 2.72e-22 99.4
Msa0342400 AT5G35980.2 48.611 72 34 1 307 375 253 324 6.71e-13 70.9
Msa0342400 AT1G13350.1 33.750 160 95 5 25 179 428 581 2.89e-16 81.3
Msa0342400 AT1G13350.2 33.750 160 95 5 25 179 455 608 3.79e-16 80.9
Msa0342400 AT3G25840.1 32.500 160 97 5 25 179 603 756 4.31e-16 80.9
Msa0342400 AT1G13350.3 33.750 160 95 5 25 179 501 654 7.19e-16 80.1
Msa0342400 AT3G25840.2 32.500 160 97 5 25 179 341 494 1.66e-15 78.6
Msa0342400 AT1G73460.2 33.784 148 89 3 38 181 856 998 2.58e-14 75.5
Msa0342400 AT1G73460.2 43.333 60 34 0 316 375 1003 1062 3.84e-11 65.5
Msa0342400 AT1G73460.1 33.784 148 89 3 38 181 856 998 2.58e-14 75.5
Msa0342400 AT1G73460.1 43.333 60 34 0 316 375 1003 1062 3.84e-11 65.5
Msa0342400 AT1G73450.1 33.784 148 89 3 38 181 839 981 3.21e-14 75.1
Msa0342400 AT1G73450.1 43.333 60 34 0 316 375 986 1045 4.00e-11 65.5
Msa0342400 AT3G17750.1 33.784 148 89 3 38 181 825 967 5.93e-14 74.3
Msa0342400 AT3G17750.1 43.333 60 34 0 316 375 972 1031 4.60e-11 65.1
Msa0342400 AT4G32660.4 38.000 100 56 2 82 181 1 94 6.13e-14 72.0
Msa0342400 AT4G32660.4 47.541 61 32 0 318 378 123 183 5.74e-12 66.2
Msa0342400 AT3G53640.1 31.875 160 98 5 25 179 309 462 2.73e-13 72.0
Msa0342400 AT2G40120.1 33.548 155 94 3 31 181 252 401 3.24e-13 71.6
Msa0342400 AT4G24740.10 45.902 61 33 0 318 378 57 117 1.91e-12 66.6
Msa0342400 AT4G24740.8 45.902 61 33 0 318 378 57 117 1.91e-12 66.6

Find 99 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAGTGAATGGGAAAATT+AGG 0.138672 2_4:+64740768 None:intergenic
TCTTTACTTGTGGGACTATT+AGG 0.223443 2_4:+64738920 None:intergenic
AAGTGCAAGCTTGTGGATTT+TGG 0.224760 2_4:-64738791 Msa0342400:CDS
TTGGACCACTTTAAGCATTC+AGG 0.246674 2_4:-64739421 Msa0342400:CDS
AGAAATTTGCTACCATGTTT+TGG 0.273662 2_4:-64739293 Msa0342400:CDS
TTTCAACTGTTTGGCTCGCT+TGG 0.308825 2_4:-64740450 Msa0342400:CDS
GGATCTTTAGATGGATCTAT+TGG 0.324147 2_4:+64739193 None:intergenic
AGCAATGACTTCTGAAACTA+AGG 0.331800 2_4:-64738891 Msa0342400:CDS
CACAAGGAAGTCAGGTTTCT+AGG 0.332484 2_4:-64738862 Msa0342400:CDS
TTCAGTGAATGGGAAAATTA+GGG 0.339771 2_4:+64740769 None:intergenic
CGCTTGGGATACTCTCAAAT+TGG 0.345638 2_4:-64740434 Msa0342400:intron
GTGAAACCAATTGTAGAAAA+TGG 0.359586 2_4:-64738953 Msa0342400:CDS
TCTAAAGATCCTAGAAAATC+AGG 0.368774 2_4:-64739181 Msa0342400:CDS
GCTGATTCATCTTTACTTGT+GGG 0.369166 2_4:+64738911 None:intergenic
TGTTCAGAGTAAGCTTGGTT+GGG 0.371537 2_4:-64740479 Msa0342400:CDS
TGAATCTATTTGAAGAATAA+TGG 0.374054 2_4:+64740691 None:intergenic
TTACTACAATCATCTTGTTC+AGG 0.376415 2_4:+64738980 None:intergenic
AGATGTCCTGAGGTTCTTCT+AGG 0.395840 2_4:-64738713 Msa0342400:CDS
GAAATGTGTTGTGAAGCTTT+TGG 0.397383 2_4:-64739440 Msa0342400:CDS
TAATGGTCAGCATGTTTGTA+TGG 0.402029 2_4:-64739395 Msa0342400:CDS
TTTAAGCATTCAGGGCCTAA+TGG 0.407435 2_4:-64739412 Msa0342400:CDS
TTCAACTGTTTGGCTCGCTT+GGG 0.408495 2_4:-64740449 Msa0342400:CDS
AGAATCCTCCTCTGCTGCCT+CGG 0.415247 2_4:+64739009 None:intergenic
GGATACAGTCTTGACTTTAG+TGG 0.417337 2_4:+64739138 None:intergenic
TGCTGATTCATCTTTACTTG+TGG 0.423615 2_4:+64738910 None:intergenic
TGGACCACTTTAAGCATTCA+GGG 0.426302 2_4:-64739420 Msa0342400:CDS
ATTAAGCTTCAAACTAGTAT+TGG 0.429527 2_4:+64740636 None:intergenic
GACATCTATACTGCCTAGTC+TGG 0.431990 2_4:+64738729 None:intergenic
TTGTTCAGAGTAAGCTTGGT+TGG 0.440447 2_4:-64740480 Msa0342400:CDS
GCTTAATCCTTCGACTTCAA+TGG 0.441539 2_4:-64740620 Msa0342400:exon
TGGTGGTGGATGAGAAAGAT+TGG 0.445967 2_4:+64740711 None:intergenic
GGATGTTCCACAAGGAAGTC+AGG 0.451642 2_4:-64738870 Msa0342400:CDS
TTTCCCATTCACTGAATTCG+AGG 0.463468 2_4:-64740762 Msa0342400:five_prime_UTR
GAATCCTCCTCTGCTGCCTC+GGG 0.466324 2_4:+64739010 None:intergenic
GTTCAGAGTAAGCTTGGTTG+GGG 0.478128 2_4:-64740478 Msa0342400:CDS
TCAAGACTGTATCCAAGAAC+GGG 0.487936 2_4:-64739129 Msa0342400:CDS
ATACAAACATGCTGACCATT+AGG 0.491084 2_4:+64739397 None:intergenic
GTAGCAAATTTCTTTGACCA+TGG 0.492513 2_4:+64739303 None:intergenic
ATATGCTTTGAGCTTGCCAC+TGG 0.494568 2_4:-64738647 Msa0342400:CDS
ATTGGGTTGGAGTGAAATTG+AGG 0.498354 2_4:+64740729 None:intergenic
TATGTTGTTCAGAGTAAGCT+TGG 0.499567 2_4:-64740484 Msa0342400:CDS
GGAAAGTCCCGAGGCAGCAG+AGG 0.502003 2_4:-64739017 Msa0342400:CDS
AAAACCTCGAATTCAGTGAA+TGG 0.506638 2_4:+64740758 None:intergenic
AAACCTCGAATTCAGTGAAT+GGG 0.509572 2_4:+64740759 None:intergenic
TTGGGTTGGAGTGAAATTGA+GGG 0.513437 2_4:+64740730 None:intergenic
AATTTCTTTGACCATGGGAA+GGG 0.522927 2_4:+64739309 None:intergenic
GGTTATCATGCGGTTCAGAT+TGG 0.523054 2_4:-64740529 Msa0342400:CDS
TTAGTGGTTGGAAGTATAAG+TGG 0.528613 2_4:+64739154 None:intergenic
ATTTCTTTGACCATGGGAAG+GGG 0.529053 2_4:+64739310 None:intergenic
GCACTACACGGAAGCGGCAA+TGG 0.529430 2_4:-64739512 Msa0342400:CDS
TCTCAAACAAATTGCTGAAG+GGG 0.530198 2_4:-64739476 Msa0342400:CDS
AAGTCCCGAGGCAGCAGAGG+AGG 0.531648 2_4:-64739014 Msa0342400:CDS
AAACATGATAAAAGCTCGAA+TGG 0.532947 2_4:-64739100 Msa0342400:CDS
ATTCTCAAACAAATTGCTGA+AGG 0.536936 2_4:-64739478 Msa0342400:CDS
TTGGAGTGAAATTGAGGGAA+AGG 0.545619 2_4:+64740735 None:intergenic
ACTCGACTCCGGCAGATATG+TGG 0.548164 2_4:-64738682 Msa0342400:CDS
TCCTTCGACTTCAATGGCGG+AGG 0.550311 2_4:-64740614 Msa0342400:exon
ACAGTGGTGATAACTATGAC+AGG 0.561800 2_4:-64738604 Msa0342400:CDS
TTAGAACCTAGAAGAACCTC+AGG 0.563105 2_4:+64738707 None:intergenic
TTCTCAAACAAATTGCTGAA+GGG 0.564427 2_4:-64739477 Msa0342400:CDS
TGCTCAGCACTACACGGAAG+CGG 0.566332 2_4:-64739518 Msa0342400:CDS
AAATTTCTTTGACCATGGGA+AGG 0.567519 2_4:+64739308 None:intergenic
GTCAAGACTGTATCCAAGAA+CGG 0.569523 2_4:-64739130 Msa0342400:CDS
GTGGATGAGAAAGATTGGGT+TGG 0.570002 2_4:+64740716 None:intergenic
GTGTAAGAAGATTGTCCCCA+AGG 0.570530 2_4:+64739362 None:intergenic
TAGCAAATTTCTTTGACCAT+GGG 0.571005 2_4:+64739304 None:intergenic
GCAAAGGACCACATATCTGC+CGG 0.573521 2_4:+64738674 None:intergenic
GGTGGTGGATGAGAAAGATT+GGG 0.576553 2_4:+64740712 None:intergenic
TCGTGGTATTCCCCTTCCCA+TGG 0.577077 2_4:-64739320 Msa0342400:CDS
ACAGTCTTGACTTTAGTGGT+TGG 0.580495 2_4:+64739142 None:intergenic
CTCAAAGCATATGCAAGCAA+AGG 0.581090 2_4:+64738658 None:intergenic
GATTACAGTTCGGAAGATGA+AGG 0.582493 2_4:-64740574 Msa0342400:CDS
AGATGCGAGTGATTACAGTT+CGG 0.587171 2_4:-64740584 Msa0342400:CDS
TGATCTTAAGTGCAAGCTTG+TGG 0.588631 2_4:-64738798 Msa0342400:CDS
TGATAACTATGACAGGGATG+AGG 0.596142 2_4:-64738597 None:intergenic
AATTGCTGAAGGGGATCTAG+AGG 0.602637 2_4:-64739467 Msa0342400:CDS
GGAAGTCAGGTTTCTAGGAG+AGG 0.605679 2_4:-64738857 Msa0342400:CDS
TAGGCCCTGAATGCTTAAAG+TGG 0.607415 2_4:+64739416 None:intergenic
TATTTGAAGAATAATGGTGG+TGG 0.615793 2_4:+64740697 None:intergenic
TAGTGGTTGGAAGTATAAGT+GGG 0.617001 2_4:+64739155 None:intergenic
TCCTCCGCCATTGAAGTCGA+AGG 0.617006 2_4:+64740613 None:intergenic
CCAATTGTAGAAAATGGTGA+AGG 0.622581 2_4:-64738947 Msa0342400:CDS
CTAGAAACCTGACTTCCTTG+TGG 0.628911 2_4:+64738863 None:intergenic
AATCCAAACCCACCAAAACA+TGG 0.629227 2_4:+64739281 None:intergenic
AGGTTCTAAATACTCGACTC+CGG 0.631900 2_4:-64738693 Msa0342400:CDS
TAATCCTTCGACTTCAATGG+CGG 0.636314 2_4:-64740617 Msa0342400:exon
AGCTCAGAAGGAAAGTCCCG+AGG 0.651825 2_4:-64739026 Msa0342400:CDS
GAAAAGTGCTCAGCACTACA+CGG 0.656728 2_4:-64739524 Msa0342400:CDS
ATCTATTTGAAGAATAATGG+TGG 0.661720 2_4:+64740694 None:intergenic
CAGTGGTGATAACTATGACA+GGG 0.667534 2_4:-64738603 Msa0342400:CDS
CAAACGAGGTGGTTATCATG+CGG 0.669550 2_4:-64740539 Msa0342400:CDS
TTCGGAAGATGAAGGAACTG+AGG 0.673927 2_4:-64740566 Msa0342400:CDS
ATCAAGTATAGTGATTATCG+TGG 0.676361 2_4:-64739337 Msa0342400:CDS
GAAACTAAGGATGTTCCACA+AGG 0.679404 2_4:-64738878 Msa0342400:CDS
TTACAAATGATATCCAGACT+AGG 0.679700 2_4:-64738742 Msa0342400:CDS
TAGGCAGTATAGATGTCCTG+AGG 0.713543 2_4:-64738723 Msa0342400:CDS
GGAACTGAGGATTACAAACG+AGG 0.716479 2_4:-64740553 Msa0342400:CDS
ACTGAGGATTACAAACGAGG+TGG 0.729665 2_4:-64740550 Msa0342400:CDS
TCATAGTTATCACCACTGTG+AGG 0.731898 2_4:+64738608 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACTTGAAATTTGAAAT+AGG + chr2_4:64738752-64738771 None:intergenic 15.0%
!! ATAAATCAAAACAATGAAAA+GGG + chr2_4:64739014-64739033 None:intergenic 15.0%
!! AATAAATCAAAACAATGAAA+AGG + chr2_4:64739015-64739034 None:intergenic 15.0%
!!! TTTTCATTGTTTTGATTTAT+TGG - chr2_4:64739014-64739033 Msa0342400:CDS 15.0%
!!! TAATTTTCTCAAATTATTAG+TGG + chr2_4:64739494-64739513 None:intergenic 15.0%
!!! AAAAACTTGAAATTTGAAAT+AGG + chr2_4:64738752-64738771 None:intergenic 15.0%
!! ATAAATCAAAACAATGAAAA+GGG + chr2_4:64739014-64739033 None:intergenic 15.0%
!! AATAAATCAAAACAATGAAA+AGG + chr2_4:64739015-64739034 None:intergenic 15.0%
!!! TTTTCATTGTTTTGATTTAT+TGG - chr2_4:64739014-64739033 Msa0342400:CDS 15.0%
!!! TAATTTTCTCAAATTATTAG+TGG + chr2_4:64739494-64739513 None:intergenic 15.0%
!! TGAATCTATTTGAAGAATAA+TGG + chr2_4:64738728-64738747 None:intergenic 20.0%
!!! TGATTATTGATTATTGAGTT+TGG - chr2_4:64739063-64739082 Msa0342400:CDS 20.0%
!! TGTCAATTGAAACTAATATA+AGG - chr2_4:64739228-64739247 Msa0342400:CDS 20.0%
!! TTGAAACTAATATAAGGATT+AGG - chr2_4:64739234-64739253 Msa0342400:CDS 20.0%
!! TCATATATATTGTGTGTTAT+TGG - chr2_4:64739726-64739745 Msa0342400:intron 20.0%
!! TGAATCTATTTGAAGAATAA+TGG + chr2_4:64738728-64738747 None:intergenic 20.0%
!!! TGATTATTGATTATTGAGTT+TGG - chr2_4:64739063-64739082 Msa0342400:CDS 20.0%
!! TGTCAATTGAAACTAATATA+AGG - chr2_4:64739228-64739247 Msa0342400:CDS 20.0%
!! TTGAAACTAATATAAGGATT+AGG - chr2_4:64739234-64739253 Msa0342400:CDS 20.0%
!! TCATATATATTGTGTGTTAT+TGG - chr2_4:64739726-64739745 Msa0342400:intron 20.0%
! ATCTATTTGAAGAATAATGG+TGG + chr2_4:64738725-64738744 None:intergenic 25.0%
! ATTAAGCTTCAAACTAGTAT+TGG + chr2_4:64738783-64738802 None:intergenic 25.0%
!!! ATTATTGAGTTTGGTGTTTT+TGG - chr2_4:64739072-64739091 Msa0342400:CDS 25.0%
!!! TTATTGAGTTTGGTGTTTTT+GGG - chr2_4:64739073-64739092 Msa0342400:CDS 25.0%
!!! TGCTTTTTTCTTGTTTTCTA+TGG - chr2_4:64739147-64739166 Msa0342400:CDS 25.0%
! ATTGAAAACTCTACTAACAA+TGG - chr2_4:64739828-64739847 Msa0342400:intron 25.0%
! TTGAAAACTCTACTAACAAT+GGG - chr2_4:64739829-64739848 Msa0342400:intron 25.0%
!! AGCACTTTTCTGAATTTTTA+AGG + chr2_4:64739882-64739901 None:intergenic 25.0%
! ATCTATTTGAAGAATAATGG+TGG + chr2_4:64738725-64738744 None:intergenic 25.0%
! ATTAAGCTTCAAACTAGTAT+TGG + chr2_4:64738783-64738802 None:intergenic 25.0%
!!! ATTATTGAGTTTGGTGTTTT+TGG - chr2_4:64739072-64739091 Msa0342400:CDS 25.0%
!!! TTATTGAGTTTGGTGTTTTT+GGG - chr2_4:64739073-64739092 Msa0342400:CDS 25.0%
!!! TGCTTTTTTCTTGTTTTCTA+TGG - chr2_4:64739147-64739166 Msa0342400:CDS 25.0%
! ATTGAAAACTCTACTAACAA+TGG - chr2_4:64739828-64739847 Msa0342400:intron 25.0%
! TTGAAAACTCTACTAACAAT+GGG - chr2_4:64739829-64739848 Msa0342400:intron 25.0%
!! AGCACTTTTCTGAATTTTTA+AGG + chr2_4:64739882-64739901 None:intergenic 25.0%
!!! TTTTTGAGTTGTGTTTGGTT+TGG + chr2_4:64738627-64738646 None:intergenic 30.0%
TTCAGTGAATGGGAAAATTA+GGG + chr2_4:64738650-64738669 None:intergenic 30.0%
ATTCAGTGAATGGGAAAATT+AGG + chr2_4:64738651-64738670 None:intergenic 30.0%
TATTTGAAGAATAATGGTGG+TGG + chr2_4:64738722-64738741 None:intergenic 30.0%
! ATTGGTGACACTTTCAAAAA+TGG - chr2_4:64738905-64738924 Msa0342400:CDS 30.0%
! TTGGTGACACTTTCAAAAAT+GGG - chr2_4:64738906-64738925 Msa0342400:CDS 30.0%
TTGAATGTAACTACAAGTCT+CGG - chr2_4:64739352-64739371 Msa0342400:CDS 30.0%
TCTCAAATTATTAGTGGTGT+CGG + chr2_4:64739488-64739507 None:intergenic 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr2_4:64739519-64739538 Msa0342400:CDS 30.0%
GAAACTAGAAAGAGAATCAA+GGG + chr2_4:64739694-64739713 None:intergenic 30.0%
AGAAACTAGAAAGAGAATCA+AGG + chr2_4:64739695-64739714 None:intergenic 30.0%
!! CTCTTTCTAGTTTCTTTAGT+TGG - chr2_4:64739700-64739719 Msa0342400:intron 30.0%
!! TTTCTAGTTTCTTTAGTTGG+TGG - chr2_4:64739703-64739722 Msa0342400:intron 30.0%
! GTTATTGGAGTTCTTTTCAT+TGG - chr2_4:64739741-64739760 Msa0342400:intron 30.0%
TGAAAACTCTACTAACAATG+GGG - chr2_4:64739830-64739849 Msa0342400:intron 30.0%
ATTCTCAAACAAATTGCTGA+AGG - chr2_4:64739938-64739957 Msa0342400:intron 30.0%
TTCTCAAACAAATTGCTGAA+GGG - chr2_4:64739939-64739958 Msa0342400:intron 30.0%
! TGTATGGTTTTTGAATTCCT+TGG - chr2_4:64740037-64740056 Msa0342400:intron 30.0%
! GTATGGTTTTTGAATTCCTT+GGG - chr2_4:64740038-64740057 Msa0342400:intron 30.0%
! TATGGTTTTTGAATTCCTTG+GGG - chr2_4:64740039-64740058 Msa0342400:intron 30.0%
ATCAAGTATAGTGATTATCG+TGG - chr2_4:64740079-64740098 Msa0342400:intron 30.0%
TAGCAAATTTCTTTGACCAT+GGG + chr2_4:64740115-64740134 None:intergenic 30.0%
!!! AGAAATTTGCTACCATGTTT+TGG - chr2_4:64740123-64740142 Msa0342400:intron 30.0%
!!! GATTTTCTAGGATCTTTAGA+TGG + chr2_4:64740235-64740254 None:intergenic 30.0%
TCTAAAGATCCTAGAAAATC+AGG - chr2_4:64740235-64740254 Msa0342400:intron 30.0%
AAACATGATAAAAGCTCGAA+TGG - chr2_4:64740316-64740335 Msa0342400:intron 30.0%
TTACTACAATCATCTTGTTC+AGG + chr2_4:64740439-64740458 None:intergenic 30.0%
GTGAAACCAATTGTAGAAAA+TGG - chr2_4:64740463-64740482 Msa0342400:CDS 30.0%
TTACAAATGATATCCAGACT+AGG - chr2_4:64740674-64740693 Msa0342400:five_prime_UTR 30.0%
!!! TTTTTGAGTTGTGTTTGGTT+TGG + chr2_4:64738627-64738646 None:intergenic 30.0%
TTCAGTGAATGGGAAAATTA+GGG + chr2_4:64738650-64738669 None:intergenic 30.0%
ATTCAGTGAATGGGAAAATT+AGG + chr2_4:64738651-64738670 None:intergenic 30.0%
TATTTGAAGAATAATGGTGG+TGG + chr2_4:64738722-64738741 None:intergenic 30.0%
! ATTGGTGACACTTTCAAAAA+TGG - chr2_4:64738905-64738924 Msa0342400:CDS 30.0%
! TTGGTGACACTTTCAAAAAT+GGG - chr2_4:64738906-64738925 Msa0342400:CDS 30.0%
TTGAATGTAACTACAAGTCT+CGG - chr2_4:64739352-64739371 Msa0342400:CDS 30.0%
TCTCAAATTATTAGTGGTGT+CGG + chr2_4:64739488-64739507 None:intergenic 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr2_4:64739519-64739538 Msa0342400:CDS 30.0%
GAAACTAGAAAGAGAATCAA+GGG + chr2_4:64739694-64739713 None:intergenic 30.0%
AGAAACTAGAAAGAGAATCA+AGG + chr2_4:64739695-64739714 None:intergenic 30.0%
!! CTCTTTCTAGTTTCTTTAGT+TGG - chr2_4:64739700-64739719 Msa0342400:intron 30.0%
!! TTTCTAGTTTCTTTAGTTGG+TGG - chr2_4:64739703-64739722 Msa0342400:intron 30.0%
! GTTATTGGAGTTCTTTTCAT+TGG - chr2_4:64739741-64739760 Msa0342400:intron 30.0%
TGAAAACTCTACTAACAATG+GGG - chr2_4:64739830-64739849 Msa0342400:intron 30.0%
ATTCTCAAACAAATTGCTGA+AGG - chr2_4:64739938-64739957 Msa0342400:intron 30.0%
TTCTCAAACAAATTGCTGAA+GGG - chr2_4:64739939-64739958 Msa0342400:intron 30.0%
! TGTATGGTTTTTGAATTCCT+TGG - chr2_4:64740037-64740056 Msa0342400:intron 30.0%
! GTATGGTTTTTGAATTCCTT+GGG - chr2_4:64740038-64740057 Msa0342400:intron 30.0%
! TATGGTTTTTGAATTCCTTG+GGG - chr2_4:64740039-64740058 Msa0342400:intron 30.0%
ATCAAGTATAGTGATTATCG+TGG - chr2_4:64740079-64740098 Msa0342400:intron 30.0%
TAGCAAATTTCTTTGACCAT+GGG + chr2_4:64740115-64740134 None:intergenic 30.0%
!!! AGAAATTTGCTACCATGTTT+TGG - chr2_4:64740123-64740142 Msa0342400:intron 30.0%
!!! GATTTTCTAGGATCTTTAGA+TGG + chr2_4:64740235-64740254 None:intergenic 30.0%
TCTAAAGATCCTAGAAAATC+AGG - chr2_4:64740235-64740254 Msa0342400:intron 30.0%
AAACATGATAAAAGCTCGAA+TGG - chr2_4:64740316-64740335 Msa0342400:intron 30.0%
TTACTACAATCATCTTGTTC+AGG + chr2_4:64740439-64740458 None:intergenic 30.0%
GTGAAACCAATTGTAGAAAA+TGG - chr2_4:64740463-64740482 Msa0342400:CDS 30.0%
TTACAAATGATATCCAGACT+AGG - chr2_4:64740674-64740693 Msa0342400:five_prime_UTR 30.0%
!!! TTGTTGTTTTTGTTGTTGCC+GGG + chr2_4:64738601-64738620 None:intergenic 35.0%
!!! CTTGTTGTTTTTGTTGTTGC+CGG + chr2_4:64738602-64738621 None:intergenic 35.0%
!!! TAGGGTTTTTGAGTTGTGTT+TGG + chr2_4:64738632-64738651 None:intergenic 35.0%
AAACCTCGAATTCAGTGAAT+GGG + chr2_4:64738660-64738679 None:intergenic 35.0%
AAAACCTCGAATTCAGTGAA+TGG + chr2_4:64738661-64738680 None:intergenic 35.0%
TATGTTGTTCAGAGTAAGCT+TGG - chr2_4:64738932-64738951 Msa0342400:CDS 35.0%
!!! TTGGTGTTTTTGGGTTATGA+AGG - chr2_4:64739082-64739101 Msa0342400:CDS 35.0%
!!! TGGTGTTTTTGGGTTATGAA+GGG - chr2_4:64739083-64739102 Msa0342400:CDS 35.0%
TAGGTTGTGTGTGTTTAGTT+TGG - chr2_4:64739626-64739645 Msa0342400:intron 35.0%
! ACTATGTTTGTTGAAAGCCT+AGG - chr2_4:64739782-64739801 Msa0342400:intron 35.0%
TCTCAAACAAATTGCTGAAG+GGG - chr2_4:64739940-64739959 Msa0342400:intron 35.0%
! GAAATGTGTTGTGAAGCTTT+TGG - chr2_4:64739976-64739995 Msa0342400:intron 35.0%
ATACAAACATGCTGACCATT+AGG + chr2_4:64740022-64740041 None:intergenic 35.0%
TAATGGTCAGCATGTTTGTA+TGG - chr2_4:64740021-64740040 Msa0342400:intron 35.0%
AATTTCTTTGACCATGGGAA+GGG + chr2_4:64740110-64740129 None:intergenic 35.0%
AAATTTCTTTGACCATGGGA+AGG + chr2_4:64740111-64740130 None:intergenic 35.0%
GTAGCAAATTTCTTTGACCA+TGG + chr2_4:64740116-64740135 None:intergenic 35.0%
!!! AATTTGCTACCATGTTTTGG+TGG - chr2_4:64740126-64740145 Msa0342400:intron 35.0%
!!! ATTTGCTACCATGTTTTGGT+GGG - chr2_4:64740127-64740146 Msa0342400:intron 35.0%
! GAGACAAGCAAAACATTTTC+TGG + chr2_4:64740202-64740221 None:intergenic 35.0%
GGATCTTTAGATGGATCTAT+TGG + chr2_4:64740226-64740245 None:intergenic 35.0%
! TAGTGGTTGGAAGTATAAGT+GGG + chr2_4:64740264-64740283 None:intergenic 35.0%
! TTAGTGGTTGGAAGTATAAG+TGG + chr2_4:64740265-64740284 None:intergenic 35.0%
! CGAGCTTTTATCATGTTTTG+TGG + chr2_4:64740314-64740333 None:intergenic 35.0%
!!! CATCTTCTTTTTCTGGTTCT+TGG + chr2_4:64740350-64740369 None:intergenic 35.0%
AGAACCAGAAAAAGAAGATG+CGG - chr2_4:64740350-64740369 Msa0342400:intron 35.0%
! TTTTCCGCATCTTCTTTTTC+TGG + chr2_4:64740357-64740376 None:intergenic 35.0%
GAAAAAGAAGATGCGGAAAA+AGG - chr2_4:64740357-64740376 Msa0342400:intron 35.0%
! CCTTCACCATTTTCTACAAT+TGG + chr2_4:64740472-64740491 None:intergenic 35.0%
CCAATTGTAGAAAATGGTGA+AGG - chr2_4:64740469-64740488 Msa0342400:CDS 35.0%
TCTTTACTTGTGGGACTATT+AGG + chr2_4:64740499-64740518 None:intergenic 35.0%
! GCTGATTCATCTTTACTTGT+GGG + chr2_4:64740508-64740527 None:intergenic 35.0%
!! TGCTGATTCATCTTTACTTG+TGG + chr2_4:64740509-64740528 None:intergenic 35.0%
!! AGCAATGACTTCTGAAACTA+AGG - chr2_4:64740525-64740544 Msa0342400:CDS 35.0%
!! TGGATTTTGGAAATGCTTGT+TGG - chr2_4:64740638-64740657 Msa0342400:five_prime_UTR 35.0%
!!! TTGTTGTTTTTGTTGTTGCC+GGG + chr2_4:64738601-64738620 None:intergenic 35.0%
!!! CTTGTTGTTTTTGTTGTTGC+CGG + chr2_4:64738602-64738621 None:intergenic 35.0%
!!! TAGGGTTTTTGAGTTGTGTT+TGG + chr2_4:64738632-64738651 None:intergenic 35.0%
AAACCTCGAATTCAGTGAAT+GGG + chr2_4:64738660-64738679 None:intergenic 35.0%
AAAACCTCGAATTCAGTGAA+TGG + chr2_4:64738661-64738680 None:intergenic 35.0%
TATGTTGTTCAGAGTAAGCT+TGG - chr2_4:64738932-64738951 Msa0342400:CDS 35.0%
!!! TTGGTGTTTTTGGGTTATGA+AGG - chr2_4:64739082-64739101 Msa0342400:CDS 35.0%
!!! TGGTGTTTTTGGGTTATGAA+GGG - chr2_4:64739083-64739102 Msa0342400:CDS 35.0%
TAGGTTGTGTGTGTTTAGTT+TGG - chr2_4:64739626-64739645 Msa0342400:intron 35.0%
! ACTATGTTTGTTGAAAGCCT+AGG - chr2_4:64739782-64739801 Msa0342400:intron 35.0%
TCTCAAACAAATTGCTGAAG+GGG - chr2_4:64739940-64739959 Msa0342400:intron 35.0%
! GAAATGTGTTGTGAAGCTTT+TGG - chr2_4:64739976-64739995 Msa0342400:intron 35.0%
ATACAAACATGCTGACCATT+AGG + chr2_4:64740022-64740041 None:intergenic 35.0%
TAATGGTCAGCATGTTTGTA+TGG - chr2_4:64740021-64740040 Msa0342400:intron 35.0%
AATTTCTTTGACCATGGGAA+GGG + chr2_4:64740110-64740129 None:intergenic 35.0%
AAATTTCTTTGACCATGGGA+AGG + chr2_4:64740111-64740130 None:intergenic 35.0%
GTAGCAAATTTCTTTGACCA+TGG + chr2_4:64740116-64740135 None:intergenic 35.0%
!!! AATTTGCTACCATGTTTTGG+TGG - chr2_4:64740126-64740145 Msa0342400:intron 35.0%
!!! ATTTGCTACCATGTTTTGGT+GGG - chr2_4:64740127-64740146 Msa0342400:intron 35.0%
! GAGACAAGCAAAACATTTTC+TGG + chr2_4:64740202-64740221 None:intergenic 35.0%
GGATCTTTAGATGGATCTAT+TGG + chr2_4:64740226-64740245 None:intergenic 35.0%
! TAGTGGTTGGAAGTATAAGT+GGG + chr2_4:64740264-64740283 None:intergenic 35.0%
! TTAGTGGTTGGAAGTATAAG+TGG + chr2_4:64740265-64740284 None:intergenic 35.0%
! CGAGCTTTTATCATGTTTTG+TGG + chr2_4:64740314-64740333 None:intergenic 35.0%
!!! CATCTTCTTTTTCTGGTTCT+TGG + chr2_4:64740350-64740369 None:intergenic 35.0%
AGAACCAGAAAAAGAAGATG+CGG - chr2_4:64740350-64740369 Msa0342400:intron 35.0%
! TTTTCCGCATCTTCTTTTTC+TGG + chr2_4:64740357-64740376 None:intergenic 35.0%
GAAAAAGAAGATGCGGAAAA+AGG - chr2_4:64740357-64740376 Msa0342400:intron 35.0%
! CCTTCACCATTTTCTACAAT+TGG + chr2_4:64740472-64740491 None:intergenic 35.0%
CCAATTGTAGAAAATGGTGA+AGG - chr2_4:64740469-64740488 Msa0342400:CDS 35.0%
TCTTTACTTGTGGGACTATT+AGG + chr2_4:64740499-64740518 None:intergenic 35.0%
! GCTGATTCATCTTTACTTGT+GGG + chr2_4:64740508-64740527 None:intergenic 35.0%
!! TGCTGATTCATCTTTACTTG+TGG + chr2_4:64740509-64740528 None:intergenic 35.0%
!! AGCAATGACTTCTGAAACTA+AGG - chr2_4:64740525-64740544 Msa0342400:CDS 35.0%
!! TGGATTTTGGAAATGCTTGT+TGG - chr2_4:64740638-64740657 Msa0342400:five_prime_UTR 35.0%
TTTCCCATTCACTGAATTCG+AGG - chr2_4:64738654-64738673 Msa0342400:CDS 40.0%
TTGGAGTGAAATTGAGGGAA+AGG + chr2_4:64738684-64738703 None:intergenic 40.0%
!! TTGGGTTGGAGTGAAATTGA+GGG + chr2_4:64738689-64738708 None:intergenic 40.0%
!! ATTGGGTTGGAGTGAAATTG+AGG + chr2_4:64738690-64738709 None:intergenic 40.0%
GCTTAATCCTTCGACTTCAA+TGG - chr2_4:64738796-64738815 Msa0342400:CDS 40.0%
TAATCCTTCGACTTCAATGG+CGG - chr2_4:64738799-64738818 Msa0342400:CDS 40.0%
AGATGCGAGTGATTACAGTT+CGG - chr2_4:64738832-64738851 Msa0342400:CDS 40.0%
GATTACAGTTCGGAAGATGA+AGG - chr2_4:64738842-64738861 Msa0342400:CDS 40.0%
TTGTTCAGAGTAAGCTTGGT+TGG - chr2_4:64738936-64738955 Msa0342400:CDS 40.0%
TGTTCAGAGTAAGCTTGGTT+GGG - chr2_4:64738937-64738956 Msa0342400:CDS 40.0%
!!! GGGGTCATTTTTCAACTGTT+TGG - chr2_4:64738957-64738976 Msa0342400:CDS 40.0%
! ATGATGCACCGACATATACA+CGG - chr2_4:64739272-64739291 Msa0342400:CDS 40.0%
CGACATGTCATTGTCATATC+CGG + chr2_4:64739301-64739320 None:intergenic 40.0%
TATGTAGCACCAATGAAGCA+CGG + chr2_4:64739608-64739627 None:intergenic 40.0%
! TCAGAGCATGTTTGTTACCT+AGG + chr2_4:64739802-64739821 None:intergenic 40.0%
TTGGACCACTTTAAGCATTC+AGG - chr2_4:64739995-64740014 Msa0342400:intron 40.0%
TGGACCACTTTAAGCATTCA+GGG - chr2_4:64739996-64740015 Msa0342400:intron 40.0%
TTTAAGCATTCAGGGCCTAA+TGG - chr2_4:64740004-64740023 Msa0342400:intron 40.0%
ATTTCTTTGACCATGGGAAG+GGG + chr2_4:64740109-64740128 None:intergenic 40.0%
AATCCAAACCCACCAAAACA+TGG + chr2_4:64740138-64740157 None:intergenic 40.0%
ACAGTCTTGACTTTAGTGGT+TGG + chr2_4:64740277-64740296 None:intergenic 40.0%
GGATACAGTCTTGACTTTAG+TGG + chr2_4:64740281-64740300 None:intergenic 40.0%
GTCAAGACTGTATCCAAGAA+CGG - chr2_4:64740286-64740305 Msa0342400:intron 40.0%
TCAAGACTGTATCCAAGAAC+GGG - chr2_4:64740287-64740306 Msa0342400:intron 40.0%
GAAACTAAGGATGTTCCACA+AGG - chr2_4:64740538-64740557 Msa0342400:CDS 40.0%
TGATCTTAAGTGCAAGCTTG+TGG - chr2_4:64740618-64740637 Msa0342400:exon 40.0%
! AAGTGCAAGCTTGTGGATTT+TGG - chr2_4:64740625-64740644 Msa0342400:five_prime_UTR 40.0%
TTAGAACCTAGAAGAACCTC+AGG + chr2_4:64740712-64740731 None:intergenic 40.0%
!! AGGTTCTAAATACTCGACTC+CGG - chr2_4:64740723-64740742 Msa0342400:five_prime_UTR 40.0%
CTCAAAGCATATGCAAGCAA+AGG + chr2_4:64740761-64740780 None:intergenic 40.0%
ATCAAAAAGAACATCGCCAG+TGG + chr2_4:64740788-64740807 None:intergenic 40.0%
! GTTCTTTTTGATCCTCACAG+TGG - chr2_4:64740796-64740815 Msa0342400:five_prime_UTR 40.0%
TCATAGTTATCACCACTGTG+AGG + chr2_4:64740811-64740830 None:intergenic 40.0%
ACAGTGGTGATAACTATGAC+AGG - chr2_4:64740812-64740831 Msa0342400:five_prime_UTR 40.0%
CAGTGGTGATAACTATGACA+GGG - chr2_4:64740813-64740832 Msa0342400:five_prime_UTR 40.0%
TTTCCCATTCACTGAATTCG+AGG - chr2_4:64738654-64738673 Msa0342400:CDS 40.0%
TTGGAGTGAAATTGAGGGAA+AGG + chr2_4:64738684-64738703 None:intergenic 40.0%
!! TTGGGTTGGAGTGAAATTGA+GGG + chr2_4:64738689-64738708 None:intergenic 40.0%
!! ATTGGGTTGGAGTGAAATTG+AGG + chr2_4:64738690-64738709 None:intergenic 40.0%
GCTTAATCCTTCGACTTCAA+TGG - chr2_4:64738796-64738815 Msa0342400:CDS 40.0%
TAATCCTTCGACTTCAATGG+CGG - chr2_4:64738799-64738818 Msa0342400:CDS 40.0%
AGATGCGAGTGATTACAGTT+CGG - chr2_4:64738832-64738851 Msa0342400:CDS 40.0%
GATTACAGTTCGGAAGATGA+AGG - chr2_4:64738842-64738861 Msa0342400:CDS 40.0%
TTGTTCAGAGTAAGCTTGGT+TGG - chr2_4:64738936-64738955 Msa0342400:CDS 40.0%
TGTTCAGAGTAAGCTTGGTT+GGG - chr2_4:64738937-64738956 Msa0342400:CDS 40.0%
!!! GGGGTCATTTTTCAACTGTT+TGG - chr2_4:64738957-64738976 Msa0342400:CDS 40.0%
! ATGATGCACCGACATATACA+CGG - chr2_4:64739272-64739291 Msa0342400:CDS 40.0%
CGACATGTCATTGTCATATC+CGG + chr2_4:64739301-64739320 None:intergenic 40.0%
TATGTAGCACCAATGAAGCA+CGG + chr2_4:64739608-64739627 None:intergenic 40.0%
! TCAGAGCATGTTTGTTACCT+AGG + chr2_4:64739802-64739821 None:intergenic 40.0%
TTGGACCACTTTAAGCATTC+AGG - chr2_4:64739995-64740014 Msa0342400:intron 40.0%
TGGACCACTTTAAGCATTCA+GGG - chr2_4:64739996-64740015 Msa0342400:intron 40.0%
TTTAAGCATTCAGGGCCTAA+TGG - chr2_4:64740004-64740023 Msa0342400:intron 40.0%
ATTTCTTTGACCATGGGAAG+GGG + chr2_4:64740109-64740128 None:intergenic 40.0%
AATCCAAACCCACCAAAACA+TGG + chr2_4:64740138-64740157 None:intergenic 40.0%
ACAGTCTTGACTTTAGTGGT+TGG + chr2_4:64740277-64740296 None:intergenic 40.0%
GGATACAGTCTTGACTTTAG+TGG + chr2_4:64740281-64740300 None:intergenic 40.0%
GTCAAGACTGTATCCAAGAA+CGG - chr2_4:64740286-64740305 Msa0342400:intron 40.0%
TCAAGACTGTATCCAAGAAC+GGG - chr2_4:64740287-64740306 Msa0342400:intron 40.0%
GAAACTAAGGATGTTCCACA+AGG - chr2_4:64740538-64740557 Msa0342400:CDS 40.0%
TGATCTTAAGTGCAAGCTTG+TGG - chr2_4:64740618-64740637 Msa0342400:exon 40.0%
! AAGTGCAAGCTTGTGGATTT+TGG - chr2_4:64740625-64740644 Msa0342400:five_prime_UTR 40.0%
TTAGAACCTAGAAGAACCTC+AGG + chr2_4:64740712-64740731 None:intergenic 40.0%
!! AGGTTCTAAATACTCGACTC+CGG - chr2_4:64740723-64740742 Msa0342400:five_prime_UTR 40.0%
CTCAAAGCATATGCAAGCAA+AGG + chr2_4:64740761-64740780 None:intergenic 40.0%
ATCAAAAAGAACATCGCCAG+TGG + chr2_4:64740788-64740807 None:intergenic 40.0%
! GTTCTTTTTGATCCTCACAG+TGG - chr2_4:64740796-64740815 Msa0342400:five_prime_UTR 40.0%
TCATAGTTATCACCACTGTG+AGG + chr2_4:64740811-64740830 None:intergenic 40.0%
ACAGTGGTGATAACTATGAC+AGG - chr2_4:64740812-64740831 Msa0342400:five_prime_UTR 40.0%
CAGTGGTGATAACTATGACA+GGG - chr2_4:64740813-64740832 Msa0342400:five_prime_UTR 40.0%
GTGGATGAGAAAGATTGGGT+TGG + chr2_4:64738703-64738722 None:intergenic 45.0%
!! GGTGGTGGATGAGAAAGATT+GGG + chr2_4:64738707-64738726 None:intergenic 45.0%
!! TGGTGGTGGATGAGAAAGAT+TGG + chr2_4:64738708-64738727 None:intergenic 45.0%
TTCGGAAGATGAAGGAACTG+AGG - chr2_4:64738850-64738869 Msa0342400:CDS 45.0%
GGAACTGAGGATTACAAACG+AGG - chr2_4:64738863-64738882 Msa0342400:CDS 45.0%
ACTGAGGATTACAAACGAGG+TGG - chr2_4:64738866-64738885 Msa0342400:CDS 45.0%
CAAACGAGGTGGTTATCATG+CGG - chr2_4:64738877-64738896 Msa0342400:CDS 45.0%
GGTTATCATGCGGTTCAGAT+TGG - chr2_4:64738887-64738906 Msa0342400:CDS 45.0%
GTTCAGAGTAAGCTTGGTTG+GGG - chr2_4:64738938-64738957 Msa0342400:CDS 45.0%
! TTTCAACTGTTTGGCTCGCT+TGG - chr2_4:64738966-64738985 Msa0342400:CDS 45.0%
! TTCAACTGTTTGGCTCGCTT+GGG - chr2_4:64738967-64738986 Msa0342400:CDS 45.0%
CGCTTGGGATACTCTCAAAT+TGG - chr2_4:64738982-64739001 Msa0342400:CDS 45.0%
GACCAATGTCCAACACATGT+CGG + chr2_4:64739392-64739411 None:intergenic 45.0%
GACATTGGTCACACCTTTGA+TGG - chr2_4:64739402-64739421 Msa0342400:CDS 45.0%
! CACACCTTTGATGGAAGTGT+TGG - chr2_4:64739411-64739430 Msa0342400:CDS 45.0%
GTGCCTATGAAGCATGGATA+CGG - chr2_4:64739433-64739452 Msa0342400:CDS 45.0%
TGTCCGTATCCATGCTTCAT+AGG + chr2_4:64739439-64739458 None:intergenic 45.0%
!! TACAAGTGTCGGTGTTGTGT+CGG - chr2_4:64739530-64739549 Msa0342400:CDS 45.0%
!! GTGCTTCATTGGTGCTACAT+AGG - chr2_4:64739607-64739626 Msa0342400:intron 45.0%
!! GAAAAGTGCTCAGCACTACA+CGG - chr2_4:64739892-64739911 Msa0342400:intron 45.0%
AATTGCTGAAGGGGATCTAG+AGG - chr2_4:64739949-64739968 Msa0342400:intron 45.0%
TAGGCCCTGAATGCTTAAAG+TGG + chr2_4:64740003-64740022 None:intergenic 45.0%
GTGTAAGAAGATTGTCCCCA+AGG + chr2_4:64740057-64740076 None:intergenic 45.0%
!!! CTACCATGTTTTGGTGGGTT+TGG - chr2_4:64740132-64740151 Msa0342400:intron 45.0%
! AGTGGGACTCCTGATTTTCT+AGG + chr2_4:64740247-64740266 None:intergenic 45.0%
! ATGTTTTGTGGTCCCGTTCT+TGG + chr2_4:64740302-64740321 None:intergenic 45.0%
GGCTAAAAAAGCAGCTCAGA+AGG - chr2_4:64740378-64740397 Msa0342400:intron 45.0%
CTAGAAACCTGACTTCCTTG+TGG + chr2_4:64740556-64740575 None:intergenic 45.0%
CACAAGGAAGTCAGGTTTCT+AGG - chr2_4:64740554-64740573 Msa0342400:CDS 45.0%
GACATCTATACTGCCTAGTC+TGG + chr2_4:64740690-64740709 None:intergenic 45.0%
TAGGCAGTATAGATGTCCTG+AGG - chr2_4:64740693-64740712 Msa0342400:five_prime_UTR 45.0%
AGATGTCCTGAGGTTCTTCT+AGG - chr2_4:64740703-64740722 Msa0342400:five_prime_UTR 45.0%
! ATATGCTTTGAGCTTGCCAC+TGG - chr2_4:64740769-64740788 Msa0342400:five_prime_UTR 45.0%
GTGGATGAGAAAGATTGGGT+TGG + chr2_4:64738703-64738722 None:intergenic 45.0%
!! GGTGGTGGATGAGAAAGATT+GGG + chr2_4:64738707-64738726 None:intergenic 45.0%
!! TGGTGGTGGATGAGAAAGAT+TGG + chr2_4:64738708-64738727 None:intergenic 45.0%
TTCGGAAGATGAAGGAACTG+AGG - chr2_4:64738850-64738869 Msa0342400:CDS 45.0%
GGAACTGAGGATTACAAACG+AGG - chr2_4:64738863-64738882 Msa0342400:CDS 45.0%
ACTGAGGATTACAAACGAGG+TGG - chr2_4:64738866-64738885 Msa0342400:CDS 45.0%
CAAACGAGGTGGTTATCATG+CGG - chr2_4:64738877-64738896 Msa0342400:CDS 45.0%
GGTTATCATGCGGTTCAGAT+TGG - chr2_4:64738887-64738906 Msa0342400:CDS 45.0%
GTTCAGAGTAAGCTTGGTTG+GGG - chr2_4:64738938-64738957 Msa0342400:CDS 45.0%
! TTTCAACTGTTTGGCTCGCT+TGG - chr2_4:64738966-64738985 Msa0342400:CDS 45.0%
! TTCAACTGTTTGGCTCGCTT+GGG - chr2_4:64738967-64738986 Msa0342400:CDS 45.0%
CGCTTGGGATACTCTCAAAT+TGG - chr2_4:64738982-64739001 Msa0342400:CDS 45.0%
GACCAATGTCCAACACATGT+CGG + chr2_4:64739392-64739411 None:intergenic 45.0%
GACATTGGTCACACCTTTGA+TGG - chr2_4:64739402-64739421 Msa0342400:CDS 45.0%
! CACACCTTTGATGGAAGTGT+TGG - chr2_4:64739411-64739430 Msa0342400:CDS 45.0%
GTGCCTATGAAGCATGGATA+CGG - chr2_4:64739433-64739452 Msa0342400:CDS 45.0%
TGTCCGTATCCATGCTTCAT+AGG + chr2_4:64739439-64739458 None:intergenic 45.0%
!! TACAAGTGTCGGTGTTGTGT+CGG - chr2_4:64739530-64739549 Msa0342400:CDS 45.0%
!! GTGCTTCATTGGTGCTACAT+AGG - chr2_4:64739607-64739626 Msa0342400:intron 45.0%
!! GAAAAGTGCTCAGCACTACA+CGG - chr2_4:64739892-64739911 Msa0342400:intron 45.0%
AATTGCTGAAGGGGATCTAG+AGG - chr2_4:64739949-64739968 Msa0342400:intron 45.0%
TAGGCCCTGAATGCTTAAAG+TGG + chr2_4:64740003-64740022 None:intergenic 45.0%
GTGTAAGAAGATTGTCCCCA+AGG + chr2_4:64740057-64740076 None:intergenic 45.0%
!!! CTACCATGTTTTGGTGGGTT+TGG - chr2_4:64740132-64740151 Msa0342400:intron 45.0%
! AGTGGGACTCCTGATTTTCT+AGG + chr2_4:64740247-64740266 None:intergenic 45.0%
! ATGTTTTGTGGTCCCGTTCT+TGG + chr2_4:64740302-64740321 None:intergenic 45.0%
GGCTAAAAAAGCAGCTCAGA+AGG - chr2_4:64740378-64740397 Msa0342400:intron 45.0%
CTAGAAACCTGACTTCCTTG+TGG + chr2_4:64740556-64740575 None:intergenic 45.0%
CACAAGGAAGTCAGGTTTCT+AGG - chr2_4:64740554-64740573 Msa0342400:CDS 45.0%
GACATCTATACTGCCTAGTC+TGG + chr2_4:64740690-64740709 None:intergenic 45.0%
TAGGCAGTATAGATGTCCTG+AGG - chr2_4:64740693-64740712 Msa0342400:five_prime_UTR 45.0%
AGATGTCCTGAGGTTCTTCT+AGG - chr2_4:64740703-64740722 Msa0342400:five_prime_UTR 45.0%
! ATATGCTTTGAGCTTGCCAC+TGG - chr2_4:64740769-64740788 Msa0342400:five_prime_UTR 45.0%
ACCGACATATACACGGACAC+CGG - chr2_4:64739279-64739298 Msa0342400:CDS 50.0%
TCCGGTGTCCGTGTATATGT+CGG + chr2_4:64739283-64739302 None:intergenic 50.0%
TGTCAGAGTCCGACATGTGT+TGG - chr2_4:64739380-64739399 Msa0342400:CDS 50.0%
GTCCGACATGTGTTGGACAT+TGG - chr2_4:64739387-64739406 Msa0342400:CDS 50.0%
GGCACCAACACTTCCATCAA+AGG + chr2_4:64739418-64739437 None:intergenic 50.0%
! GTGTTGGTGCCTATGAAGCA+TGG - chr2_4:64739427-64739446 Msa0342400:CDS 50.0%
TGAAGCATGGATACGGACAC+CGG - chr2_4:64739440-64739459 Msa0342400:CDS 50.0%
GATTATGCGTGTCCCAGTGT+TGG + chr2_4:64739575-64739594 None:intergenic 50.0%
GACACGCATAATCCGAGAAG+TGG - chr2_4:64739582-64739601 Msa0342400:intron 50.0%
AATGAAGCACGGCCACTTCT+CGG + chr2_4:64739597-64739616 None:intergenic 50.0%
GGATGTTCCACAAGGAAGTC+AGG - chr2_4:64740546-64740565 Msa0342400:CDS 50.0%
! GGAAGTCAGGTTTCTAGGAG+AGG - chr2_4:64740559-64740578 Msa0342400:CDS 50.0%
GCAAAGGACCACATATCTGC+CGG + chr2_4:64740745-64740764 None:intergenic 50.0%
ACCGACATATACACGGACAC+CGG - chr2_4:64739279-64739298 Msa0342400:CDS 50.0%
TCCGGTGTCCGTGTATATGT+CGG + chr2_4:64739283-64739302 None:intergenic 50.0%
TGTCAGAGTCCGACATGTGT+TGG - chr2_4:64739380-64739399 Msa0342400:CDS 50.0%
GTCCGACATGTGTTGGACAT+TGG - chr2_4:64739387-64739406 Msa0342400:CDS 50.0%
GGCACCAACACTTCCATCAA+AGG + chr2_4:64739418-64739437 None:intergenic 50.0%
! GTGTTGGTGCCTATGAAGCA+TGG - chr2_4:64739427-64739446 Msa0342400:CDS 50.0%
TGAAGCATGGATACGGACAC+CGG - chr2_4:64739440-64739459 Msa0342400:CDS 50.0%
GATTATGCGTGTCCCAGTGT+TGG + chr2_4:64739575-64739594 None:intergenic 50.0%
GACACGCATAATCCGAGAAG+TGG - chr2_4:64739582-64739601 Msa0342400:intron 50.0%
AATGAAGCACGGCCACTTCT+CGG + chr2_4:64739597-64739616 None:intergenic 50.0%
GGATGTTCCACAAGGAAGTC+AGG - chr2_4:64740546-64740565 Msa0342400:CDS 50.0%
! GGAAGTCAGGTTTCTAGGAG+AGG - chr2_4:64740559-64740578 Msa0342400:CDS 50.0%
GCAAAGGACCACATATCTGC+CGG + chr2_4:64740745-64740764 None:intergenic 50.0%
TCCTTCGACTTCAATGGCGG+AGG - chr2_4:64738802-64738821 Msa0342400:CDS 55.0%
TCCTCCGCCATTGAAGTCGA+AGG + chr2_4:64738806-64738825 None:intergenic 55.0%
GTCAGTGTCTGTGTCGTGTC+CGG + chr2_4:64739462-64739481 None:intergenic 55.0%
ACACGACACGTGTCCAACAC+TGG - chr2_4:64739559-64739578 Msa0342400:intron 55.0%
CACGACACGTGTCCAACACT+GGG - chr2_4:64739560-64739579 Msa0342400:intron 55.0%
GAGAAGTGGCCGTGCTTCAT+TGG - chr2_4:64739596-64739615 Msa0342400:intron 55.0%
TGCTCAGCACTACACGGAAG+CGG - chr2_4:64739898-64739917 Msa0342400:intron 55.0%
TCGTGGTATTCCCCTTCCCA+TGG - chr2_4:64740096-64740115 Msa0342400:intron 55.0%
AGCTCAGAAGGAAAGTCCCG+AGG - chr2_4:64740390-64740409 Msa0342400:intron 55.0%
AGAATCCTCCTCTGCTGCCT+CGG + chr2_4:64740410-64740429 None:intergenic 55.0%
ACTCGACTCCGGCAGATATG+TGG - chr2_4:64740734-64740753 Msa0342400:five_prime_UTR 55.0%
TCCTTCGACTTCAATGGCGG+AGG - chr2_4:64738802-64738821 Msa0342400:CDS 55.0%
TCCTCCGCCATTGAAGTCGA+AGG + chr2_4:64738806-64738825 None:intergenic 55.0%
GTCAGTGTCTGTGTCGTGTC+CGG + chr2_4:64739462-64739481 None:intergenic 55.0%
ACACGACACGTGTCCAACAC+TGG - chr2_4:64739559-64739578 Msa0342400:intron 55.0%
CACGACACGTGTCCAACACT+GGG - chr2_4:64739560-64739579 Msa0342400:intron 55.0%
GAGAAGTGGCCGTGCTTCAT+TGG - chr2_4:64739596-64739615 Msa0342400:intron 55.0%
TGCTCAGCACTACACGGAAG+CGG - chr2_4:64739898-64739917 Msa0342400:intron 55.0%
TCGTGGTATTCCCCTTCCCA+TGG - chr2_4:64740096-64740115 Msa0342400:intron 55.0%
AGCTCAGAAGGAAAGTCCCG+AGG - chr2_4:64740390-64740409 Msa0342400:intron 55.0%
AGAATCCTCCTCTGCTGCCT+CGG + chr2_4:64740410-64740429 None:intergenic 55.0%
ACTCGACTCCGGCAGATATG+TGG - chr2_4:64740734-64740753 Msa0342400:five_prime_UTR 55.0%
GCACTACACGGAAGCGGCAA+TGG - chr2_4:64739904-64739923 Msa0342400:intron 60.0%
GAATCCTCCTCTGCTGCCTC+GGG + chr2_4:64740409-64740428 None:intergenic 60.0%
GCACTACACGGAAGCGGCAA+TGG - chr2_4:64739904-64739923 Msa0342400:intron 60.0%
GAATCCTCCTCTGCTGCCTC+GGG + chr2_4:64740409-64740428 None:intergenic 60.0%
GGAAAGTCCCGAGGCAGCAG+AGG - chr2_4:64740399-64740418 Msa0342400:intron 65.0%
AAGTCCCGAGGCAGCAGAGG+AGG - chr2_4:64740402-64740421 Msa0342400:intron 65.0%
GGAAAGTCCCGAGGCAGCAG+AGG - chr2_4:64740399-64740418 Msa0342400:intron 65.0%
AAGTCCCGAGGCAGCAGAGG+AGG - chr2_4:64740402-64740421 Msa0342400:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 64738598 64740840 64738598 ID=Msa0342400;Name=Msa0342400
chr2_4 mRNA 64738598 64740840 64738598 ID=Msa0342400-mRNA-1;Parent=Msa0342400;Name=Msa0342400-mRNA-1;_AED=0.01;_eAED=0.01;_QI=217|1|0.5|1|1|1|2|0|387
chr2_4 exon 64738598 64739569 64738598 ID=Msa0342400-mRNA-1:exon:20765;Parent=Msa0342400-mRNA-1
chr2_4 exon 64740435 64740840 64740435 ID=Msa0342400-mRNA-1:exon:20764;Parent=Msa0342400-mRNA-1
chr2_4 five_prime_UTR 64740624 64740840 64740624 ID=Msa0342400-mRNA-1:five_prime_utr;Parent=Msa0342400-mRNA-1
chr2_4 CDS 64740435 64740623 64740435 ID=Msa0342400-mRNA-1:cds;Parent=Msa0342400-mRNA-1
chr2_4 CDS 64738598 64739569 64738598 ID=Msa0342400-mRNA-1:cds;Parent=Msa0342400-mRNA-1
Gene Sequence

>Msa0342400

ATGGCGGAGGATCGCAAAGATGCGAGTGATTACAGTTCGGAAGATGAAGGAACTGAGGATTACAAACGAGGTGGTTATCATGCGGTTCAGATTGGTGACACTTTCAAAAATGGGTGCTATGTTGTTCAGAGTAAGCTTGGTTGGGGTCATTTTTCAACTGTTTGGCTCGCTTGGGATACTCTCAAATTGCGATATGTTGCCTTAAAAATTCAGAAAAGTGCTCAGCACTACACGGAAGCGGCAATGGATGAAATAAAGATTCTCAAACAAATTGCTGAAGGGGATCTAGAGGATAAGAAATGTGTTGTGAAGCTTTTGGACCACTTTAAGCATTCAGGGCCTAATGGTCAGCATGTTTGTATGGTTTTTGAATTCCTTGGGGACAATCTTCTTACACTTATCAAGTATAGTGATTATCGTGGTATTCCCCTTCCCATGGTCAAAGAAATTTGCTACCATGTTTTGGTGGGTTTGGATTATTTGCATCGTGAGCTTTCTATAATACACACTGATTTGAAGCCAGAAAATGTTTTGCTTGTCTCTCCAATAGATCCATCTAAAGATCCTAGAAAATCAGGAGTCCCACTTATACTTCCAACCACTAAAGTCAAGACTGTATCCAAGAACGGGACCACAAAACATGATAAAAGCTCGAATGGAGATTTAACCAAGAACCAGAAAAAGAAGATGCGGAAAAAGGCTAAAAAAGCAGCTCAGAAGGAAAGTCCCGAGGCAGCAGAGGAGGATTCTGAAGCACCTGAACAAGATGATTGTAGTAATGATGTGAAACCAATTGTAGAAAATGGTGAAGGTAAACCTAATAGTCCCACAAGTAAAGATGAATCAGCAATGACTTCTGAAACTAAGGATGTTCCACAAGGAAGTCAGGTTTCTAGGAGAGGTAGTTGCTCTACGAGAAAGAAGTTGCTCGCAGCTGCTGATCTTAAGTGCAAGCTTGTGGATTTTGGAAATGCTTGTTGGACGTATAAACAATTTACAAATGATATCCAGACTAGGCAGTATAGATGTCCTGAGGTTCTTCTAGGTTCTAAATACTCGACTCCGGCAGATATGTGGTCCTTTGCTTGCATATGCTTTGAGCTTGCCACTGGCGATGTTCTTTTTGATCCTCACAGTGGTGATAACTATGACAGGGATGAG

Protein sequence

>Msa0342400

MAEDRKDASDYSSEDEGTEDYKRGGYHAVQIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTLKLRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDLEDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGIPLPMVKEICYHVLVGLDYLHRELSIIHTDLKPENVLLVSPIDPSKDPRKSGVPLILPTTKVKTVSKNGTTKHDKSSNGDLTKNQKKKMRKKAKKAAQKESPEAAEEDSEAPEQDDCSNDVKPIVENGEGKPNSPTSKDESAMTSETKDVPQGSQVSRRGSCSTRKKLLAAADLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADMWSFACICFELATGDVLFDPHSGDNYDRDE