AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1454960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454960 MtrunA17_Chr1g0192211 97.191 178 2 1 1 178 1 175 3.46e-128 366
Msa1454960 MtrunA17_Chr7g0272281 79.470 151 29 1 28 178 16 164 2.24e-87 262
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454960 AT3G05545.1 61.957 184 55 5 1 176 1 177 5.48e-75 231
Msa1454960 AT2G47700.2 60.897 156 49 3 25 178 28 173 3.89e-60 188
Msa1454960 AT2G47700.1 60.897 156 49 3 25 178 28 173 9.69e-60 190
Msa1454960 AT4G13490.1 35.833 120 60 3 35 153 22 125 2.71e-20 84.7
Msa1454960 AT2G15260.1 40.157 127 70 4 6 128 95 219 6.31e-18 80.1

Find 45 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCAGCATTCAATATAAA+AGG 0.253162 tig0035540:+22420 Msa1454960:CDS
CAGTCATCCATGCTGAATTC+TGG 0.287241 tig0035540:-22516 None:intergenic
AATTGTCGGAAGATTGAAAA+AGG 0.289088 tig0035540:+22459 Msa1454960:CDS
CTTGAGGTTGTTACCGATAA+TGG 0.300180 tig0035540:+20173 Msa1454960:CDS
TAATAATAATAATCATAATA+AGG 0.319028 tig0035540:+20100 Msa1454960:CDS
ATGAAGGAAGCAAGTCTTTA+GGG 0.323769 tig0035540:+20129 Msa1454960:CDS
TGCAGTCATTTGGAGTTCAT+TGG 0.343375 tig0035540:+23193 Msa1454960:intron
GATGAAGGAAGCAAGTCTTT+AGG 0.345860 tig0035540:+20128 Msa1454960:CDS
GATGCAGATCCTGATATAAT+TGG 0.357139 tig0035540:+25899 Msa1454960:intron
GGAGTTCATTGGTGCCCATT+TGG 0.365386 tig0035540:+23204 Msa1454960:CDS
GGGCAATGGCTTTATGCTAA+TGG 0.375917 tig0035540:+22480 Msa1454960:CDS
ATTGTGTTCGTGTTGGGATT+AGG 0.382080 tig0035540:-19962 None:intergenic
TGCCCGTATGTTGCTTACTT+TGG 0.391036 tig0035540:+25974 Msa1454960:CDS
TCCTTCGCTAAGCTTCTTTG+TGG 0.392617 tig0035540:+20203 Msa1454960:CDS
GCATGTTGTCCAATTATATC+AGG 0.397854 tig0035540:-25926 None:intergenic
GGCTTTATGCTAATGGTTCT+CGG 0.403781 tig0035540:+22487 Msa1454960:CDS
AAATGGTTTCTGCAGTCATT+TGG 0.407123 tig0035540:+23183 Msa1454960:intron
TTAGAAAGATGTGAGATCTA+AGG 0.414359 tig0035540:-19932 None:intergenic
GTCTTCGTTTGGTTAATGTT+TGG 0.424252 tig0035540:-19910 None:intergenic
GAAGGATCTATCACCATTAT+CGG 0.424636 tig0035540:-20186 None:intergenic
CATAATAAGGTTGTTGATGA+AGG 0.442708 tig0035540:+20113 Msa1454960:CDS
TGATCTTAGCTACTCTGAAA+TGG 0.446810 tig0035540:+22560 Msa1454960:CDS
ATGTGAATTGTGTTCGTGTT+GGG 0.447314 tig0035540:-19968 None:intergenic
TGTGGTCATCAATTTCATCT+TGG 0.452243 tig0035540:+20221 Msa1454960:CDS
GTCGTGCCATGTTGCCAAAT+GGG 0.453928 tig0035540:-23218 None:intergenic
TTATGTCATGTAGATTGCAT+TGG 0.472051 tig0035540:+22399 Msa1454960:intron
CAGAATTCAGCATGGATGAC+TGG 0.481270 tig0035540:+22517 Msa1454960:CDS
TGAGATCTAAGGTCTTCGTT+TGG 0.492649 tig0035540:-19921 None:intergenic
TGCTGCATTTGCTGAACATA+CGG 0.498654 tig0035540:+25928 Msa1454960:CDS
AAAGTAAGCAACATACGGGC+AGG 0.507918 tig0035540:-25990 None:intergenic
TAGGCTTACTCGAAAGATGA+TGG 0.510811 tig0035540:-23243 None:intergenic
AGTCGTGCCATGTTGCCAAA+TGG 0.512759 tig0035540:-23219 None:intergenic
CAATGCAATGTCCTAATTGT+CGG 0.518244 tig0035540:+22445 Msa1454960:CDS
TTGGTGCCCATTTGGCAACA+TGG 0.526111 tig0035540:+23212 Msa1454960:CDS
ACAAAACACAATGTCATAGT+TGG 0.526899 tig0035540:+19866 Msa1454960:five_prime_UTR
TATGTGAATTGTGTTCGTGT+TGG 0.528043 tig0035540:-19969 None:intergenic
CAGAGTAGCTAAGATCATAT+AGG 0.528717 tig0035540:-22554 None:intergenic
GTCTTGTTCAATTTGTCTTG+AGG 0.541701 tig0035540:+20157 Msa1454960:CDS
GGGATGACTAGCAGATGATA+CGG 0.579316 tig0035540:-25969 None:intergenic
TTCGTGTTGGGATTAGGACA+TGG 0.620735 tig0035540:-19956 None:intergenic
AAGTAAGCAACATACGGGCA+GGG 0.633760 tig0035540:-25989 None:intergenic
ACCACAAAGAAGCTTAGCGA+AGG 0.648349 tig0035540:-20204 None:intergenic
TGGAAGAAGAAAGAAGAGAG+AGG 0.650396 tig0035540:-19890 None:intergenic
GTCATATCCAGAATTCAGCA+TGG 0.655390 tig0035540:+22509 Msa1454960:CDS
GGATGACTGGACGCATGATG+AGG 0.669707 tig0035540:+22530 Msa1454960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAAAAAACAATTTTTTT+GGG - tig0035540:23533-23552 None:intergenic 10.0%
!! ATCAAAAAAAAAAATTTACA+GGG - tig0035540:24107-24126 None:intergenic 10.0%
!! AATCAAAAAAAAAAATTTAC+AGG - tig0035540:24108-24127 None:intergenic 10.0%
!!! AATAATTTCTCTTTATTTAT+AGG + tig0035540:24872-24891 Msa1454960:intron 10.0%
!! AAAAAGATGTAAAATAATTA+GGG - tig0035540:25339-25358 None:intergenic 10.0%
!! TAAAATTTAAGAAACATTAA+AGG - tig0035540:25698-25717 None:intergenic 10.0%
!!! TTTAATGTTTCTTAAATTTT+AGG + tig0035540:25697-25716 Msa1454960:intron 10.0%
!! TTTCAATAAATTAATATATC+TGG - tig0035540:25873-25892 None:intergenic 10.0%
!!! TTTTTTCTCTTTTCAATTTT+AGG + tig0035540:20027-20046 Msa1454960:five_prime_UTR 15.0%
!!! TTTTTCTCTTTTCAATTTTA+GGG + tig0035540:20028-20047 Msa1454960:five_prime_UTR 15.0%
!! GACAATAAAAATTCTATAAT+GGG + tig0035540:21285-21304 Msa1454960:intron 15.0%
!! GCAAAAATATAATAACAAAT+AGG - tig0035540:22363-22382 None:intergenic 15.0%
!!! TTTTTTTAGTTACAATACAT+TGG - tig0035540:22933-22952 None:intergenic 15.0%
!! GATCATTTATGTATTATAAA+TGG - tig0035540:23014-23033 None:intergenic 15.0%
!!! GGAGAAAAAAAAATTATTTT+AGG - tig0035540:23445-23464 None:intergenic 15.0%
!!! GAAGAAAAAAACAATTTTTT+TGG - tig0035540:23534-23553 None:intergenic 15.0%
!! TCAAAAAAAAAAATTTACAG+GGG - tig0035540:24106-24125 None:intergenic 15.0%
!! AAGTAATTTCACTAAAAATT+TGG - tig0035540:24425-24444 None:intergenic 15.0%
!!! ATATTTTATTCTTTTAAGCT+AGG + tig0035540:25009-25028 Msa1454960:intron 15.0%
!! AAAAGATGTAAAATAATTAG+GGG - tig0035540:25338-25357 None:intergenic 15.0%
!! GAAAAAGATGTAAAATAATT+AGG - tig0035540:25340-25359 None:intergenic 15.0%
!!! AATTTTAGGGTTTTTGTAAT+GGG + tig0035540:20041-20060 Msa1454960:exon 20.0%
!! TCAAATTCATACAATAGTAA+CGG - tig0035540:20359-20378 None:intergenic 20.0%
!! ATTCTGAATTATATGTTTGT+TGG + tig0035540:20378-20397 Msa1454960:intron 20.0%
!!! AAAATCAGAAGAATTTTTGT+TGG + tig0035540:20414-20433 Msa1454960:intron 20.0%
!!! AAAATATTGATGATTGGATT+TGG + tig0035540:20518-20537 Msa1454960:intron 20.0%
!!! AACATGTTTTCAATTTTGAT+CGG + tig0035540:20576-20595 Msa1454960:intron 20.0%
!!! TTATGCACAAATTTGATTTA+TGG + tig0035540:20985-21004 Msa1454960:intron 20.0%
!! TTATACATAAAAAACTAAGC+TGG - tig0035540:21039-21058 None:intergenic 20.0%
!! CGACAATAAAAATTCTATAA+TGG + tig0035540:21284-21303 Msa1454960:intron 20.0%
!!! TATTTCATTTTGGTGAATAA+TGG + tig0035540:22067-22086 Msa1454960:intron 20.0%
!!! ATTTCATTTTGGTGAATAAT+GGG + tig0035540:22068-22087 Msa1454960:intron 20.0%
!!! AGCTTTAATCTTCTTAATAT+AGG - tig0035540:22654-22673 None:intergenic 20.0%
!!! ATAAAAATGGATTTCATCTT+TGG - tig0035540:23036-23055 None:intergenic 20.0%
!!! TCCATTTTTATATGTATAAG+TGG + tig0035540:23045-23064 Msa1454960:intron 20.0%
!! ACCACTTATACATATAAAAA+TGG - tig0035540:23049-23068 None:intergenic 20.0%
!!! TTTTTATATGTATAAGTGGT+TGG + tig0035540:23049-23068 Msa1454960:intron 20.0%
!! TGTCTCTCAATATAATAAAA+GGG - tig0035540:23122-23141 None:intergenic 20.0%
!! TTGTCTCTCAATATAATAAA+AGG - tig0035540:23123-23142 None:intergenic 20.0%
!! ATGACAAATGAAAGTTAATT+AGG - tig0035540:23265-23284 None:intergenic 20.0%
!!! TATGATATGATTTTGTTCTT+TGG + tig0035540:23288-23307 Msa1454960:intron 20.0%
!!! AAAAAATTATTTTAGGACAC+TGG - tig0035540:23438-23457 None:intergenic 20.0%
!! TGATTAGTAAAAGTCAAATA+AGG - tig0035540:23925-23944 None:intergenic 20.0%
!! AAAAAAAAAAATTTACAGGG+GGG - tig0035540:24104-24123 None:intergenic 20.0%
!! CAAAAAAAAAAATTTACAGG+GGG - tig0035540:24105-24124 None:intergenic 20.0%
!!! TTACTGTTATTAAGATTTTG+TGG + tig0035540:24223-24242 Msa1454960:intron 20.0%
!! TTCTTCTCTTGTAATATAAT+TGG + tig0035540:24696-24715 Msa1454960:intron 20.0%
!!! TTAATGGATTCCTATATTTA+GGG + tig0035540:25511-25530 Msa1454960:intron 20.0%
!!! CTTAAATTTTAGGTGTTTTT+AGG + tig0035540:25707-25726 Msa1454960:intron 20.0%
!!! CAATTTTAGGGTTTTTGTAA+TGG + tig0035540:20040-20059 Msa1454960:exon 25.0%
!!! GAGATCTGTTTTTTAGTTTT+TGG + tig0035540:20327-20346 Msa1454960:intron 25.0%
!! AATTATATGTTTGTTGGTGT+TGG + tig0035540:20384-20403 Msa1454960:intron 25.0%
!! ATTATATGTTTGTTGGTGTT+GGG + tig0035540:20385-20404 Msa1454960:intron 25.0%
!! GATGACAAAATATTGATGAT+TGG + tig0035540:20512-20531 Msa1454960:intron 25.0%
!! TTGGATATACATGTTTCTTT+TGG + tig0035540:20537-20556 Msa1454960:intron 25.0%
! AACTTTGTCGAATATAACAT+CGG - tig0035540:20627-20646 None:intergenic 25.0%
!!! ACAAAGTTAGCTTTTAATGA+TGG + tig0035540:20639-20658 Msa1454960:intron 25.0%
!! TTTCATGATTTAGAGTAGAT+AGG + tig0035540:20684-20703 Msa1454960:intron 25.0%
!! CTACCAATTTTACAACAAAT+TGG - tig0035540:20795-20814 None:intergenic 25.0%
! CAATGTGTAGTTATAAACTT+AGG + tig0035540:20897-20916 Msa1454960:intron 25.0%
! GTAGTTATAAACTTAGGATT+AGG + tig0035540:20903-20922 Msa1454960:intron 25.0%
! TTCAGCATAACAACAATATA+TGG - tig0035540:21068-21087 None:intergenic 25.0%
! CCAAAGTTTCTCTTATAAAT+AGG - tig0035540:21114-21133 None:intergenic 25.0%
! CCTATTTATAAGAGAAACTT+TGG + tig0035540:21111-21130 Msa1454960:intron 25.0%
! CCTATTTATAAGAGAAAGTT+AGG - tig0035540:21196-21215 None:intergenic 25.0%
! CCTAACTTTCTCTTATAAAT+AGG + tig0035540:21193-21212 Msa1454960:intron 25.0%
! AATATAGTTAATATCAGTCC+CGG + tig0035540:21243-21262 Msa1454960:intron 25.0%
! TTGCAGAAATTCAATGAAAT+TGG + tig0035540:21476-21495 Msa1454960:intron 25.0%
!! ATGAAATTGGCAATTACTTT+TGG + tig0035540:21489-21508 Msa1454960:intron 25.0%
!! ATTAAGTATTTTCCCTTTAC+AGG - tig0035540:21575-21594 None:intergenic 25.0%
! AAGAAGATATTTCAGCTTTA+GGG + tig0035540:21996-22015 Msa1454960:intron 25.0%
!! TAACCATCAGTGTTATTATA+TGG - tig0035540:22680-22699 None:intergenic 25.0%
!! CATAAATTTTCTATTGCTCT+TGG - tig0035540:22795-22814 None:intergenic 25.0%
! ACAAAAAGATCTACAAATGA+AGG - tig0035540:22885-22904 None:intergenic 25.0%
! GAACAAGAAATAATTCCAAA+CGG - tig0035540:23100-23119 None:intergenic 25.0%
! TTTATTTATCCATCCACTAT+CGG - tig0035540:23682-23701 None:intergenic 25.0%
! ACTGCTAATGTAAAAAACTT+AGG - tig0035540:23865-23884 None:intergenic 25.0%
! AATAAGGTTAAAATGAAGCA+AGG - tig0035540:23909-23928 None:intergenic 25.0%
!! TGACTTTTACTAATCAACTT+TGG + tig0035540:23929-23948 Msa1454960:intron 25.0%
!! GACTTTTACTAATCAACTTT+GGG + tig0035540:23930-23949 Msa1454960:intron 25.0%
!!! TGATGTGCTGAATTTTAATA+TGG + tig0035540:24005-24024 Msa1454960:intron 25.0%
!! TGATTTTACTCATCAGAATT+AGG - tig0035540:24033-24052 None:intergenic 25.0%
! AATTCTGATGAGTAAAATCA+AGG + tig0035540:24033-24052 Msa1454960:intron 25.0%
! ATTCTGATGAGTAAAATCAA+GGG + tig0035540:24034-24053 Msa1454960:intron 25.0%
! TAATAACAGTAAGATTTCCA+TGG - tig0035540:24215-24234 None:intergenic 25.0%
!! AAATTCAAAAGTTGGTTTCT+TGG + tig0035540:24260-24279 Msa1454960:intron 25.0%
! CATATTCTGGATTAAACAAT+TGG - tig0035540:24328-24347 None:intergenic 25.0%
!! ACTTTTAGATTCAACTTAGT+TGG + tig0035540:24457-24476 Msa1454960:intron 25.0%
! ACTATTACAGATATTAGTGT+GGG - tig0035540:24630-24649 None:intergenic 25.0%
! TTATATTACAAGAGAAGAAC+AGG - tig0035540:24695-24714 None:intergenic 25.0%
! ATGTAAGAAGTTAGCTAATT+AGG - tig0035540:24949-24968 None:intergenic 25.0%
! ATAAAATATGTACTTCTGCT+GGG - tig0035540:24998-25017 None:intergenic 25.0%
! AATAAAATATGTACTTCTGC+TGG - tig0035540:24999-25018 None:intergenic 25.0%
! AATGACAGGAAATAATAAAC+TGG - tig0035540:25060-25079 None:intergenic 25.0%
!! GACAAAATAATTTGTCAAGA+GGG - tig0035540:25245-25264 None:intergenic 25.0%
! AATGCCTTTCAAAATTCAAA+GGG - tig0035540:25282-25301 None:intergenic 25.0%
! TAAAATAATTAGGGGAATGT+TGG - tig0035540:25330-25349 None:intergenic 25.0%
! AATCAACAATTAATGCTATG+AGG + tig0035540:25363-25382 Msa1454960:intron 25.0%
!!! GTTAATGGATTCCTATATTT+AGG + tig0035540:25510-25529 Msa1454960:intron 25.0%
ACAAAACACAATGTCATAGT+TGG + tig0035540:19866-19885 Msa1454960:five_prime_UTR 30.0%
TTAGAAAGATGTGAGATCTA+AGG - tig0035540:19935-19954 None:intergenic 30.0%
! CATAATAAGGTTGTTGATGA+AGG + tig0035540:20113-20132 Msa1454960:CDS 30.0%
!! TTATATGTTTGTTGGTGTTG+GGG + tig0035540:20386-20405 Msa1454960:intron 30.0%
CAATCACAAAACAAACAAAC+AGG - tig0035540:20451-20470 None:intergenic 30.0%
! GTTTTGTGATTGTTGTCATT+TGG + tig0035540:20459-20478 Msa1454960:intron 30.0%
ACTTTGTCGAATATAACATC+GGG - tig0035540:20626-20645 None:intergenic 30.0%
!! AGCTTTTAATGATGGAATTG+TGG + tig0035540:20647-20666 Msa1454960:intron 30.0%
!! CGACCAATTTGTTGTAAAAT+TGG + tig0035540:20789-20808 Msa1454960:intron 30.0%
!! TGACATATTTTGTTTCCTTG+TGG + tig0035540:20825-20844 Msa1454960:intron 30.0%
GTTTCTCTTATAAATAGGAC+CGG - tig0035540:21109-21128 None:intergenic 30.0%
CTTTCTCTTATAAATAGGAC+CGG + tig0035540:21198-21217 Msa1454960:intron 30.0%
TTGAACATAACTAATCAGTG+AGG + tig0035540:21375-21394 Msa1454960:intron 30.0%
!! TGGCAATTACTTTTGGATTT+TGG + tig0035540:21496-21515 Msa1454960:intron 30.0%
TTTACCTAAATCACCTGTAA+AGG + tig0035540:21559-21578 Msa1454960:intron 30.0%
TTACCTAAATCACCTGTAAA+GGG + tig0035540:21560-21579 Msa1454960:intron 30.0%
ACAAATCGCCAAAGAATAAT+GGG - tig0035540:21802-21821 None:intergenic 30.0%
AACAAATCGCCAAAGAATAA+TGG - tig0035540:21803-21822 None:intergenic 30.0%
GAAGAAGATATTTCAGCTTT+AGG + tig0035540:21995-22014 Msa1454960:intron 30.0%
!! ATATTTCAGCTTTAGGGTTT+GGG + tig0035540:22002-22021 Msa1454960:intron 30.0%
!! ATGGGCTAACTATTTCATTT+TGG + tig0035540:22057-22076 Msa1454960:intron 30.0%
CATGTTTATTTCACTAGACA+TGG - tig0035540:22094-22113 None:intergenic 30.0%
CATGTCTAGTGAAATAAACA+TGG + tig0035540:22092-22111 Msa1454960:intron 30.0%
CTATCTGCAATTAATAGCTA+TGG + tig0035540:22264-22283 Msa1454960:intron 30.0%
TTATGTCATGTAGATTGCAT+TGG + tig0035540:22399-22418 Msa1454960:intron 30.0%
GGTTCAGCATTCAATATAAA+AGG + tig0035540:22420-22439 Msa1454960:CDS 30.0%
! TTTTCAATCTTCCGACAATT+AGG - tig0035540:22459-22478 None:intergenic 30.0%
AATTGTCGGAAGATTGAAAA+AGG + tig0035540:22459-22478 Msa1454960:CDS 30.0%
ATTGTCGGAAGATTGAAAAA+GGG + tig0035540:22460-22479 Msa1454960:CDS 30.0%
TGACCATATAATAACACTGA+TGG + tig0035540:22674-22693 Msa1454960:intron 30.0%
CATACTAATGGAAAAAGGAA+CGG - tig0035540:22737-22756 None:intergenic 30.0%
TCATATCAGGTCTAATAAGA+TGG - tig0035540:22839-22858 None:intergenic 30.0%
ATCAGGTATTAATGGTACAT+TGG - tig0035540:22961-22980 None:intergenic 30.0%
AACGTATCATCAGGTATTAA+TGG - tig0035540:22969-22988 None:intergenic 30.0%
AAGAGAAATAACGTATCATC+AGG - tig0035540:22978-22997 None:intergenic 30.0%
!! GATACGTTATTTCTCTTCAT+TGG + tig0035540:22981-23000 Msa1454960:intron 30.0%
TTTGGATGCTATACATTCTT+TGG + tig0035540:23306-23325 Msa1454960:intron 30.0%
! AAGCTATGTTGATTAATGAG+AGG + tig0035540:23622-23641 Msa1454960:intron 30.0%
!!! ATTATTAGCTTTTCCGATAG+TGG + tig0035540:23666-23685 Msa1454960:intron 30.0%
ATAAATTAACATCCGTGTAG+TGG + tig0035540:23830-23849 Msa1454960:intron 30.0%
GCTTTAACCACATATATAAG+TGG + tig0035540:23962-23981 Msa1454960:intron 30.0%
TGAACAACCACTTATATATG+TGG - tig0035540:23972-23991 None:intergenic 30.0%
GAGTAAAATCAAGGGTTAAT+AGG + tig0035540:24042-24061 Msa1454960:intron 30.0%
TGATTTACCCCTGTAAAAAA+AGG + tig0035540:24123-24142 Msa1454960:intron 30.0%
GATTTACCCCTGTAAAAAAA+GGG + tig0035540:24124-24143 Msa1454960:intron 30.0%
ATTTACCCCTGTAAAAAAAG+GGG + tig0035540:24125-24144 Msa1454960:intron 30.0%
CTTGTAATATAGGTCATTTC+CGG - tig0035540:24157-24176 None:intergenic 30.0%
GGAAATGACCTATATTACAA+GGG + tig0035540:24156-24175 Msa1454960:intron 30.0%
CAAAAACTCCCTTGTAATAT+AGG - tig0035540:24167-24186 None:intergenic 30.0%
! CTATATTACAAGGGAGTTTT+TGG + tig0035540:24165-24184 Msa1454960:intron 30.0%
! GAGAAATGTTTGAAATACCA+TGG + tig0035540:24195-24214 Msa1454960:intron 30.0%
TTTGAATTTACTGATGCTAC+TGG - tig0035540:24249-24268 None:intergenic 30.0%
GCATCAGTAAATTCAAAAGT+TGG + tig0035540:24252-24271 Msa1454960:intron 30.0%
CACTATTACAGATATTAGTG+TGG - tig0035540:24631-24650 None:intergenic 30.0%
GGCTTATTTATTTCAAGACT+AGG + tig0035540:24717-24736 Msa1454960:intron 30.0%
!! TTCAAGACTAGGAGTATTAT+AGG + tig0035540:24728-24747 Msa1454960:intron 30.0%
TGGTATGGTTACAGAAAAAT+TGG + tig0035540:24757-24776 Msa1454960:intron 30.0%
GGTATGGTTACAGAAAAATT+GGG + tig0035540:24758-24777 Msa1454960:intron 30.0%
!! TGCATTGTTTTGCAATCAAA+GGG - tig0035540:24791-24810 None:intergenic 30.0%
!! AGTTTGTTAGAGAGATAGTT+AGG - tig0035540:24915-24934 None:intergenic 30.0%
CTATATTCGCTCCTAAATAT+AGG + tig0035540:25218-25237 Msa1454960:intron 30.0%
! GGACAAAATAATTTGTCAAG+AGG - tig0035540:25246-25265 None:intergenic 30.0%
ATGCCTTTCAAAATTCAAAG+GGG - tig0035540:25281-25300 None:intergenic 30.0%
CAATGCCTTTCAAAATTCAA+AGG - tig0035540:25283-25302 None:intergenic 30.0%
ACGGGAAATAAGAAAATTTG+TGG - tig0035540:25484-25503 None:intergenic 30.0%
ATTTCCCGTGATTTAGTTAA+TGG + tig0035540:25495-25514 Msa1454960:intron 30.0%
GAATCCATTAACTAAATCAC+GGG - tig0035540:25502-25521 None:intergenic 30.0%
GGAATCCATTAACTAAATCA+CGG - tig0035540:25503-25522 None:intergenic 30.0%
ACAGTGGTAGTATGTTATAA+TGG + tig0035540:25534-25553 Msa1454960:intron 30.0%
CAGTGGTAGTATGTTATAAT+GGG + tig0035540:25535-25554 Msa1454960:intron 30.0%
!! TATAATGGGATATACCCTTT+TGG + tig0035540:25549-25568 Msa1454960:intron 30.0%
! TTTTGTACTGTTGAATTCTC+TGG + tig0035540:25619-25638 Msa1454960:intron 30.0%
! TTTATGTTTCCGATTTTTCC+AGG + tig0035540:25758-25777 Msa1454960:intron 30.0%
! TTATGTTTCCGATTTTTCCA+GGG + tig0035540:25759-25778 Msa1454960:intron 30.0%
AGAGGCTTATTAAAAGGAAA+GGG - tig0035540:25819-25838 None:intergenic 30.0%
!! AAGCATTGACTTAAAAAGAG+CGG - tig0035540:25842-25861 None:intergenic 30.0%
GTCTTCGTTTGGTTAATGTT+TGG - tig0035540:19913-19932 None:intergenic 35.0%
ATGTGAATTGTGTTCGTGTT+GGG - tig0035540:19971-19990 None:intergenic 35.0%
TATGTGAATTGTGTTCGTGT+TGG - tig0035540:19972-19991 None:intergenic 35.0%
ATGAAGGAAGCAAGTCTTTA+GGG + tig0035540:20129-20148 Msa1454960:CDS 35.0%
! GTCTTGTTCAATTTGTCTTG+AGG + tig0035540:20157-20176 Msa1454960:CDS 35.0%
GAAGGATCTATCACCATTAT+CGG - tig0035540:20189-20208 None:intergenic 35.0%
TGTGGTCATCAATTTCATCT+TGG + tig0035540:20221-20240 Msa1454960:CDS 35.0%
!! TATATGTTTGTTGGTGTTGG+GGG + tig0035540:20387-20406 Msa1454960:intron 35.0%
ATCTTCCTGTAAGTCATGAT+TGG + tig0035540:20712-20731 Msa1454960:intron 35.0%
AGTTTCCAATCATGACTTAC+AGG - tig0035540:20720-20739 None:intergenic 35.0%
AGTCATGATTGGAAACTATG+TGG + tig0035540:20723-20742 Msa1454960:intron 35.0%
GTCATGATTGGAAACTATGT+GGG + tig0035540:20724-20743 Msa1454960:intron 35.0%
TTGACTGTGGATGTCTAATT+TGG + tig0035540:20869-20888 Msa1454960:intron 35.0%
TGACTGTGGATGTCTAATTT+GGG + tig0035540:20870-20889 Msa1454960:intron 35.0%
ATTATGTTGAATACTCCCTC+CGG + tig0035540:21087-21106 Msa1454960:intron 35.0%
AAATAACGATATACTCCCTC+CGG - tig0035540:21220-21239 None:intergenic 35.0%
AACATAACTAATCAGTGAGG+AGG + tig0035540:21378-21397 Msa1454960:intron 35.0%
ACATAACTAATCAGTGAGGA+GGG + tig0035540:21379-21398 Msa1454960:intron 35.0%
TTTCCCTTTACAGGTGATTT+AGG - tig0035540:21566-21585 None:intergenic 35.0%
ACAAGATCAAGTCCAAATAG+AGG - tig0035540:21675-21694 None:intergenic 35.0%
!!! TTGTTGCCAAAAGGTGTTTT+CGG + tig0035540:21818-21837 Msa1454960:intron 35.0%
AAGACAAGAAGAAACGAAAG+AGG + tig0035540:21892-21911 Msa1454960:intron 35.0%
TTACGGAAGTAAGAGAAAAG+AGG + tig0035540:21954-21973 Msa1454960:intron 35.0%
!! GATATTTCAGCTTTAGGGTT+TGG + tig0035540:22001-22020 Msa1454960:intron 35.0%
CATTTAATAAGCCCAACGAT+GGG + tig0035540:22039-22058 Msa1454960:intron 35.0%
ACAAAAACCATATAGCAGGA+TGG - tig0035540:22235-22254 None:intergenic 35.0%
! ATCCTGCTATATGGTTTTTG+TGG + tig0035540:22234-22253 Msa1454960:intron 35.0%
!! GCTTGCTTTCATGTTTTTAC+TGG + tig0035540:22311-22330 Msa1454960:intron 35.0%
CAATGCAATGTCCTAATTGT+CGG + tig0035540:22445-22464 Msa1454960:CDS 35.0%
CAGAGTAGCTAAGATCATAT+AGG - tig0035540:22557-22576 None:intergenic 35.0%
! TGATCTTAGCTACTCTGAAA+TGG + tig0035540:22560-22579 Msa1454960:CDS 35.0%
! CGTTCCTTTTTCCATTAGTA+TGG + tig0035540:22735-22754 Msa1454960:intron 35.0%
GTAGCCATACTAATGGAAAA+AGG - tig0035540:22742-22761 None:intergenic 35.0%
GTAGTTAGTAGCCATACTAA+TGG - tig0035540:22749-22768 None:intergenic 35.0%
! AAATGAAGGCATACAGTAGA+TGG - tig0035540:22871-22890 None:intergenic 35.0%
TATAAGTGGTTGGAACTTCA+AGG + tig0035540:23059-23078 Msa1454960:intron 35.0%
GAAATAATTCCAAACGGAAG+AGG - tig0035540:23094-23113 None:intergenic 35.0%
! GACTACATTTTCCCCTTAAA+TGG + tig0035540:23166-23185 Msa1454960:intron 35.0%
TGACTGCAGAAACCATTTAA+GGG - tig0035540:23181-23200 None:intergenic 35.0%
ATGACTGCAGAAACCATTTA+AGG - tig0035540:23182-23201 None:intergenic 35.0%
AAATGGTTTCTGCAGTCATT+TGG + tig0035540:23183-23202 Msa1454960:intron 35.0%
!! TAGAAGTGTCAATGCTTCAT+AGG - tig0035540:23359-23378 None:intergenic 35.0%
!!! TTATTTTAGGACACTGGTCT+GGG - tig0035540:23432-23451 None:intergenic 35.0%
!!! ATTATTTTAGGACACTGGTC+TGG - tig0035540:23433-23452 None:intergenic 35.0%
!!! TTTTTTTCTCCAACACTCCT+TGG + tig0035540:23454-23473 Msa1454960:intron 35.0%
GAAATGACCTATATTACAGG+GGG - tig0035540:24074-24093 None:intergenic 35.0%
GGAAATGACCTATATTACAG+GGG - tig0035540:24075-24094 None:intergenic 35.0%
CGGAAATGACCTATATTACA+GGG - tig0035540:24155-24174 None:intergenic 35.0%
CCTGTAATATAGGTCATTTC+CGG + tig0035540:24074-24093 Msa1454960:intron 35.0%
TTTACCCCTGTAAAAAAAGG+GGG + tig0035540:24126-24145 Msa1454960:intron 35.0%
CGGAAATGACCTATATTACA+AGG + tig0035540:24155-24174 Msa1454960:intron 35.0%
CAGAATATGACTTCTGAGTT+CGG + tig0035540:24339-24358 Msa1454960:intron 35.0%
AGAATATGACTTCTGAGTTC+GGG + tig0035540:24340-24359 Msa1454960:intron 35.0%
GGGAATTGTTATAAGCACAA+TGG + tig0035540:24374-24393 Msa1454960:intron 35.0%
TAAAGTGAGTAAGCAAGCAA+GGG + tig0035540:24553-24572 Msa1454960:intron 35.0%
! CAACAAAGGTCATCTAAAGT+GGG - tig0035540:24595-24614 None:intergenic 35.0%
TTTCTGTAACCATACCAGTT+GGG - tig0035540:24754-24773 None:intergenic 35.0%
! TTTTCTGTAACCATACCAGT+TGG - tig0035540:24755-24774 None:intergenic 35.0%
!! GCATTGTTTTGCAATCAAAG+GGG - tig0035540:24790-24809 None:intergenic 35.0%
!! CTGCATTGTTTTGCAATCAA+AGG - tig0035540:24792-24811 None:intergenic 35.0%
TTATAGGCTGCATGTCATAT+TGG + tig0035540:24888-24907 Msa1454960:intron 35.0%
TATAGGCTGCATGTCATATT+GGG + tig0035540:24889-24908 Msa1454960:intron 35.0%
CTAGGCTTGTATTACATTCT+TGG + tig0035540:25027-25046 Msa1454960:intron 35.0%
GTAGTTGAAGCTTGTATGAA+TGG + tig0035540:25080-25099 Msa1454960:intron 35.0%
! AGACCCCTTTGAATTTTGAA+AGG + tig0035540:25275-25294 Msa1454960:intron 35.0%
ATTCCTATATTTAGGGACAG+TGG + tig0035540:25518-25537 Msa1454960:intron 35.0%
ACAAACATGTTGAGCAAACT+TGG - tig0035540:25654-25673 None:intergenic 35.0%
GAGGCTTATTAAAAGGAAAG+GGG - tig0035540:25818-25837 None:intergenic 35.0%
GAGAGGCTTATTAAAAGGAA+AGG - tig0035540:25820-25839 None:intergenic 35.0%
GATGCAGATCCTGATATAAT+TGG + tig0035540:25899-25918 Msa1454960:intron 35.0%
GCATGTTGTCCAATTATATC+AGG - tig0035540:25911-25930 None:intergenic 35.0%
TGGAAGAAGAAAGAAGAGAG+AGG - tig0035540:19893-19912 None:intergenic 40.0%
! TGAGATCTAAGGTCTTCGTT+TGG - tig0035540:19924-19943 None:intergenic 40.0%
ATTGTGTTCGTGTTGGGATT+AGG - tig0035540:19965-19984 None:intergenic 40.0%
!!! AGGGTTTTTGTAATGGGTCT+TGG + tig0035540:20047-20066 Msa1454960:exon 40.0%
GATGAAGGAAGCAAGTCTTT+AGG + tig0035540:20128-20147 Msa1454960:CDS 40.0%
CTTGAGGTTGTTACCGATAA+TGG + tig0035540:20173-20192 Msa1454960:CDS 40.0%
TTTGTTTCCTTGTGGAGTTG+TGG + tig0035540:20833-20852 Msa1454960:intron 40.0%
!! TTAGAGGTATGCATTGACTG+TGG + tig0035540:20856-20875 Msa1454960:intron 40.0%
GACTGTGGATGTCTAATTTG+GGG + tig0035540:20871-20890 Msa1454960:intron 40.0%
CTCTTATAAATAGGACCGGA+GGG - tig0035540:21202-21221 None:intergenic 40.0%
TCTCTTATAAATAGGACCGG+AGG - tig0035540:21201-21220 None:intergenic 40.0%
TCTCTTATAAATAGGACCGG+AGG + tig0035540:21201-21220 Msa1454960:intron 40.0%
CTCTTATAAATAGGACCGGA+GGG + tig0035540:21202-21221 Msa1454960:intron 40.0%
TTTACTCTGCTTTGCTTTCC+GGG - tig0035540:21264-21283 None:intergenic 40.0%
GTTTACTCTGCTTTGCTTTC+CGG - tig0035540:21265-21284 None:intergenic 40.0%
ATCAGTGAGGAGGGATAAAA+AGG + tig0035540:21388-21407 Msa1454960:intron 40.0%
AGTCATGCAGTAACAGAATG+GGG - tig0035540:21772-21791 None:intergenic 40.0%
GAGTCATGCAGTAACAGAAT+GGG - tig0035540:21773-21792 None:intergenic 40.0%
TGAGTCATGCAGTAACAGAA+TGG - tig0035540:21774-21793 None:intergenic 40.0%
TCATCCGACCCATTATTCTT+TGG + tig0035540:21791-21810 Msa1454960:intron 40.0%
!! ATCGCCAAAGAATAATGGGT+CGG - tig0035540:21798-21817 None:intergenic 40.0%
!! TTTGGCGATTTGTTGCCAAA+AGG + tig0035540:21809-21828 Msa1454960:intron 40.0%
CGTTTCTTCTCTACATGTGA+AGG - tig0035540:21850-21869 None:intergenic 40.0%
! AGAAGTATGCAGATTTCCAG+CGG + tig0035540:21918-21937 Msa1454960:intron 40.0%
! AGGGTTTGGGTTTCATGTTA+TGG + tig0035540:22015-22034 Msa1454960:intron 40.0%
! GGGTTTGGGTTTCATGTTAT+GGG + tig0035540:22016-22035 Msa1454960:intron 40.0%
GCATTTAATAAGCCCAACGA+TGG + tig0035540:22038-22057 Msa1454960:intron 40.0%
GAAATAGTTAGCCCATCGTT+GGG - tig0035540:22053-22072 None:intergenic 40.0%
TGAAATAGTTAGCCCATCGT+TGG - tig0035540:22054-22073 None:intergenic 40.0%
GACCACAAAAACCATATAGC+AGG - tig0035540:22239-22258 None:intergenic 40.0%
GGAAGATTGAAAAAGGGCAA+TGG + tig0035540:22466-22485 Msa1454960:CDS 40.0%
! GGCTTTATGCTAATGGTTCT+CGG + tig0035540:22487-22506 Msa1454960:CDS 40.0%
GTCATATCCAGAATTCAGCA+TGG + tig0035540:22509-22528 Msa1454960:CDS 40.0%
! CAACAAAGCCTAAGTTGAAC+AGG - tig0035540:22592-22611 None:intergenic 40.0%
! CTGTTCAACTTAGGCTTTGT+TGG + tig0035540:22590-22609 Msa1454960:intron 40.0%
TTGCCGAAGAACTTGCATAA+AGG + tig0035540:22628-22647 Msa1454960:intron 40.0%
AGGCCTTTATGCAAGTTCTT+CGG - tig0035540:22634-22653 None:intergenic 40.0%
ATGGAGCTGAAACTCATATC+AGG - tig0035540:22852-22871 None:intergenic 40.0%
TTGCAATTACCTCTTCCGTT+TGG + tig0035540:23082-23101 Msa1454960:intron 40.0%
GGGGAAAATGTAGTCAAAAC+AGG - tig0035540:23161-23180 None:intergenic 40.0%
GACTGCAGAAACCATTTAAG+GGG - tig0035540:23180-23199 None:intergenic 40.0%
! TGCAGTCATTTGGAGTTCAT+TGG + tig0035540:23193-23212 Msa1454960:intron 40.0%
TAGGCTTACTCGAAAGATGA+TGG - tig0035540:23246-23265 None:intergenic 40.0%
GGATGCTATACATTCTTTGG+TGG + tig0035540:23309-23328 Msa1454960:intron 40.0%
! GCATTGACACTTCTAGCATA+AGG + tig0035540:23364-23383 Msa1454960:intron 40.0%
! ATGTGTTCAAGGAGGGTATA+GGG - tig0035540:23568-23587 None:intergenic 40.0%
! GTTTGAGATGTGTTCAAGGA+GGG - tig0035540:23575-23594 None:intergenic 40.0%
! TGTTTGAGATGTGTTCAAGG+AGG - tig0035540:23576-23595 None:intergenic 40.0%
! ACGTGTTTGAGATGTGTTCA+AGG - tig0035540:23579-23598 None:intergenic 40.0%
!!! TTAGCTTTTCCGATAGTGGA+TGG + tig0035540:23670-23689 Msa1454960:intron 40.0%
GTCTTTACCCCCTGTAATAT+AGG + tig0035540:24064-24083 Msa1454960:intron 40.0%
CCGGAAATGACCTATATTAC+AGG - tig0035540:24154-24173 None:intergenic 40.0%
AAATTTACAGGGGGGAAAAC+CGG - tig0035540:24096-24115 None:intergenic 40.0%
TTACCCCTGTAAAAAAAGGG+GGG + tig0035540:24127-24146 Msa1454960:intron 40.0%
!!! TTTCCCCCCCTTTTTTTACA+GGG - tig0035540:24134-24153 None:intergenic 40.0%
CGAACTCAGAAGTCATATTC+TGG - tig0035540:24341-24360 None:intergenic 40.0%
! ACAATGGACCTGTCCATTTT+TGG + tig0035540:24390-24409 Msa1454960:intron 40.0%
AGTTCCTACCAAAAATGGAC+AGG - tig0035540:24401-24420 None:intergenic 40.0%
TTGGCAGTTCCTACCAAAAA+TGG - tig0035540:24406-24425 None:intergenic 40.0%
TGGAAACCATTGTGACATGT+TGG + tig0035540:24477-24496 Msa1454960:intron 40.0%
CTAAAGTGAGTAAGCAAGCA+AGG + tig0035540:24552-24571 Msa1454960:intron 40.0%
CCAACAAAGGTCATCTAAAG+TGG - tig0035540:24596-24615 None:intergenic 40.0%
CCACTTTAGATGACCTTTGT+TGG + tig0035540:24593-24612 Msa1454960:intron 40.0%
AGGCAGCAATCAAAAGAAGA+GGG - tig0035540:24667-24686 None:intergenic 40.0%
TTACAAGAGAAGAACAGGAC+AGG - tig0035540:24690-24709 None:intergenic 40.0%
TATTATAGGCCCAACTGGTA+TGG + tig0035540:24742-24761 Msa1454960:intron 40.0%
AAAACAATGCAGCTCTTCGA+GGG + tig0035540:24800-24819 Msa1454960:intron 40.0%
!! TTGAGTGATTTAGGGCCTTT+TGG - tig0035540:24844-24863 None:intergenic 40.0%
AATTTACCAGCTGCAACAGA+AGG + tig0035540:24972-24991 Msa1454960:intron 40.0%
CAAGCTTCAACTACAATGAC+AGG - tig0035540:25074-25093 None:intergenic 40.0%
GTCAAGAGGGTCCTATATTT+AGG - tig0035540:25232-25251 None:intergenic 40.0%
TCAAAGGGGTCTCAGAAAAA+GGG - tig0035540:25267-25286 None:intergenic 40.0%
TTCAAAGGGGTCTCAGAAAA+AGG - tig0035540:25268-25287 None:intergenic 40.0%
CTACCACTGTCCCTAAATAT+AGG - tig0035540:25524-25543 None:intergenic 40.0%
! ATGGGATATACCCTTTTGGT+TGG + tig0035540:25553-25572 Msa1454960:intron 40.0%
ATGATGTCCTCCTTTAGCAA+AGG - tig0035540:25588-25607 None:intergenic 40.0%
TTGACTTAAAAAGAGCGGAG+AGG - tig0035540:25837-25856 None:intergenic 40.0%
! TGCTGCATTTGCTGAACATA+CGG + tig0035540:25928-25947 Msa1454960:CDS 40.0%
GTCCAAAGTAAGCAACATAC+GGG - tig0035540:25979-25998 None:intergenic 40.0%
GGTCCAAAGTAAGCAACATA+CGG - tig0035540:25980-25999 None:intergenic 40.0%
TTCGTGTTGGGATTAGGACA+TGG - tig0035540:19959-19978 None:intergenic 45.0%
TCCTTCGCTAAGCTTCTTTG+TGG + tig0035540:20203-20222 Msa1454960:CDS 45.0%
ACCACAAAGAAGCTTAGCGA+AGG - tig0035540:20207-20226 None:intergenic 45.0%
TCTGAATAGCGTCAGCTGTT+TGG - tig0035540:21314-21333 None:intergenic 45.0%
GGGATAAAAAGGAATGACCG+AGG + tig0035540:21399-21418 Msa1454960:intron 45.0%
! TTCTCTACATGTGAAGGTGC+TGG - tig0035540:21844-21863 None:intergenic 45.0%
TTATGCGCCATCCTGCTATA+TGG + tig0035540:22225-22244 Msa1454960:intron 45.0%
!! GGGCAATGGCTTTATGCTAA+TGG + tig0035540:22480-22499 Msa1454960:CDS 45.0%
CAGTCATCCATGCTGAATTC+TGG - tig0035540:22519-22538 None:intergenic 45.0%
CAGAATTCAGCATGGATGAC+TGG + tig0035540:22517-22536 Msa1454960:CDS 45.0%
GGTAACGTCCTGTTCAACTT+AGG + tig0035540:22581-22600 Msa1454960:intron 45.0%
TTCTAGCATAAGGTGTGCTG+AGG + tig0035540:23374-23393 Msa1454960:intron 45.0%
GACATGTATCATACGAGCGT+CGG - tig0035540:23403-23422 None:intergenic 45.0%
GACGCTCGTATGATACATGT+CGG + tig0035540:23402-23421 Msa1454960:intron 45.0%
TTCTCCAACACTCCTTGGAT+CGG + tig0035540:23459-23478 Msa1454960:intron 45.0%
! GATGTGTTCAAGGAGGGTAT+AGG - tig0035540:23569-23588 None:intergenic 45.0%
ATGAAGCAAGGATTCCGACA+TGG - tig0035540:23897-23916 None:intergenic 45.0%
TACCCCTGTAAAAAAAGGGG+GGG + tig0035540:24128-24147 Msa1454960:intron 45.0%
!!! TTCCCCCCCTTTTTTTACAG+GGG - tig0035540:24133-24152 None:intergenic 45.0%
!!! GTTTCCCCCCCTTTTTTTAC+AGG - tig0035540:24135-24154 None:intergenic 45.0%
GTAAAAAAAGGGGGGGAAAC+CGG + tig0035540:24135-24154 Msa1454960:intron 45.0%
!! TGAGTTCGGGAGTATTTGCT+TGG + tig0035540:24353-24372 Msa1454960:intron 45.0%
!! GAGTTCGGGAGTATTTGCTT+GGG + tig0035540:24354-24373 Msa1454960:intron 45.0%
!!! TGGACCTGTCCATTTTTGGT+AGG + tig0035540:24394-24413 Msa1454960:intron 45.0%
ACATTACAGTCCGTGTGTTG+TGG - tig0035540:24512-24531 None:intergenic 45.0%
! AAAGGTCATCTAAAGTGGGC+TGG - tig0035540:24591-24610 None:intergenic 45.0%
GGCAGCAATCAAAAGAAGAG+GGG - tig0035540:24666-24685 None:intergenic 45.0%
GAGGCAGCAATCAAAAGAAG+AGG - tig0035540:24668-24687 None:intergenic 45.0%
!! AGGAGTATTATAGGCCCAAC+TGG + tig0035540:24737-24756 Msa1454960:intron 45.0%
CAAAACAATGCAGCTCTTCG+AGG + tig0035540:24799-24818 Msa1454960:intron 45.0%
!! GATTTAGGGCCTTTTGGCAT+TGG - tig0035540:24838-24857 None:intergenic 45.0%
TCTCTCTCTCTCTCTCTTGA+AGG + tig0035540:25412-25431 Msa1454960:intron 45.0%
! GTTTCCGATTTTTCCAGGGA+AGG + tig0035540:25763-25782 Msa1454960:intron 45.0%
TTCGCCTTCCCTGGAAAAAT+CGG - tig0035540:25770-25789 None:intergenic 45.0%
GAGCGGAGAGGCTTATTAAA+AGG - tig0035540:25825-25844 None:intergenic 45.0%
GGGATGACTAGCAGATGATA+CGG - tig0035540:25954-25973 None:intergenic 45.0%
AAGTAAGCAACATACGGGCA+GGG - tig0035540:25974-25993 None:intergenic 45.0%
AAAGTAAGCAACATACGGGC+AGG - tig0035540:25975-25994 None:intergenic 45.0%
! TGCCCGTATGTTGCTTACTT+TGG + tig0035540:25974-25993 Msa1454960:CDS 45.0%
!! TAATAATAATAATCATAATA+AGG + tig0035540:20100-20119 Msa1454960:CDS 5.0%
CCTCTAACCACAACTCCACA+AGG - tig0035540:20843-20862 None:intergenic 50.0%
CCTTGTGGAGTTGTGGTTAG+AGG + tig0035540:20840-20859 Msa1454960:intron 50.0%
TAGAAGGTGAGGTCGTGACT+AGG + tig0035540:21442-21461 Msa1454960:intron 50.0%
AGGTCGTGACTAGGAATCTC+TGG + tig0035540:21451-21470 Msa1454960:intron 50.0%
TAAGCTGTCACAGAGCCGAA+CGG + tig0035540:21642-21661 Msa1454960:intron 50.0%
TCAGTTAGAAGCCGATGTCG+CGG + tig0035540:21702-21721 Msa1454960:intron 50.0%
GCGGCGTTATGCACACAAAA+GGG + tig0035540:21721-21740 Msa1454960:intron 50.0%
! TGCTGGCCGAAAACACCTTT+TGG - tig0035540:21827-21846 None:intergenic 50.0%
AGTATGCAGATTTCCAGCGG+TGG + tig0035540:21921-21940 Msa1454960:intron 50.0%
ATAGCAGGATGGCGCATAAC+AGG - tig0035540:22224-22243 None:intergenic 50.0%
! GGAGTTCATTGGTGCCCATT+TGG + tig0035540:23204-23223 Msa1454960:CDS 50.0%
! TTGGTGCCCATTTGGCAACA+TGG + tig0035540:23212-23231 Msa1454960:CDS 50.0%
GTCGTGCCATGTTGCCAAAT+GGG - tig0035540:23221-23240 None:intergenic 50.0%
AGTCGTGCCATGTTGCCAAA+TGG - tig0035540:23222-23241 None:intergenic 50.0%
ACGTGTCGTCATATGGGTGT+TGG - tig0035540:23487-23506 None:intergenic 50.0%
ACCCATATGACGACACGTGT+CGG + tig0035540:23489-23508 Msa1454960:intron 50.0%
TCCGACACGTGTCGTCATAT+GGG - tig0035540:23493-23512 None:intergenic 50.0%
AGGACACAGACACCACTACA+CGG - tig0035540:23845-23864 None:intergenic 50.0%
TACAGTCCGTGTGTTGTGGA+GGG - tig0035540:24508-24527 None:intergenic 50.0%
TTACAGTCCGTGTGTTGTGG+AGG - tig0035540:24509-24528 None:intergenic 50.0%
GGCTGCAAAGCAACCAACAA+AGG - tig0035540:24609-24628 None:intergenic 50.0%
CAAGAGAAGAACAGGACAGG+AGG - tig0035540:24687-24706 None:intergenic 50.0%
!!! GCCTTTTGGCATTGGTAGCT+GGG - tig0035540:24830-24849 None:intergenic 50.0%
GAGAGGCAAGCCAACCAAAA+GGG - tig0035540:25566-25585 None:intergenic 50.0%
GCTTGCCTCTCCTTTGCTAA+AGG + tig0035540:25575-25594 Msa1454960:intron 50.0%
TGCCTCTCCTTTGCTAAAGG+AGG + tig0035540:25578-25597 Msa1454960:intron 50.0%
GTCCTCCTTTAGCAAAGGAG+AGG - tig0035540:25583-25602 None:intergenic 50.0%
CGATGAAAATTCGCCTTCCC+TGG - tig0035540:25779-25798 None:intergenic 50.0%
AAAGGAATGACCGAGGCAGC+TGG + tig0035540:21406-21425 Msa1454960:intron 55.0%
TGGTCACCAGAGCTGGTAGA+AGG + tig0035540:21426-21445 Msa1454960:intron 55.0%
ACCAGAGCTGGTAGAAGGTG+AGG + tig0035540:21431-21450 Msa1454960:intron 55.0%
ACCTCACCTTCTACCAGCTC+TGG - tig0035540:21435-21454 None:intergenic 55.0%
AATAGAGGCCACCAGCCGTT+CGG - tig0035540:21660-21679 None:intergenic 55.0%
AACGGCTGGTGGCCTCTATT+TGG + tig0035540:21660-21679 Msa1454960:intron 55.0%
TGTGCATAACGCCGCGACAT+CGG - tig0035540:21716-21735 None:intergenic 55.0%
CGCGGCGTTATGCACACAAA+AGG + tig0035540:21720-21739 Msa1454960:intron 55.0%
ATGCAGATTTCCAGCGGTGG+TGG + tig0035540:21924-21943 Msa1454960:intron 55.0%
GGATGACTGGACGCATGATG+AGG + tig0035540:22530-22549 Msa1454960:CDS 55.0%
! GGAACCGATCCAAGGAGTGT+TGG - tig0035540:23466-23485 None:intergenic 55.0%
!! TGGGTGTTGGAACCGATCCA+AGG - tig0035540:23474-23493 None:intergenic 55.0%
GTCCGACACGTGTCGTCATA+TGG - tig0035540:23494-23513 None:intergenic 55.0%
!! GCAGTGTCGATGTGCCATGT+CGG + tig0035540:23880-23899 Msa1454960:intron 55.0%
ACAGTCCGTGTGTTGTGGAG+GGG - tig0035540:24507-24526 None:intergenic 55.0%
GCCCAGCTACCAATGCCAAA+AGG + tig0035540:24826-24845 Msa1454960:intron 55.0%
!!! GGCCTTTTGGCATTGGTAGC+TGG - tig0035540:24831-24850 None:intergenic 55.0%
GGAGAGGCAAGCCAACCAAA+AGG - tig0035540:25567-25586 None:intergenic 55.0%
! CAGATTTCCAGCGGTGGTGG+CGG + tig0035540:21927-21946 Msa1454960:intron 60.0%
TAAACAACCGCCACCACCGC+TGG - tig0035540:21937-21956 None:intergenic 60.0%
!! GCGGTGGTGGCGGTTGTTTA+CGG + tig0035540:21937-21956 Msa1454960:intron 60.0%
GGCGGGCCAACATGTCACAA+TGG - tig0035540:24486-24505 None:intergenic 60.0%
GCTCTGGTGACCAGCTGCCT+CGG - tig0035540:21419-21438 None:intergenic 65.0%
AGGCAGCTGGTCACCAGAGC+TGG + tig0035540:21419-21438 Msa1454960:intron 65.0%
CTGTCACAGAGCCGAACGGC+TGG + tig0035540:21646-21665 Msa1454960:intron 65.0%
TCACAGAGCCGAACGGCTGG+TGG + tig0035540:21649-21668 Msa1454960:intron 65.0%
TCCGTGTGTTGTGGAGGGGC+GGG - tig0035540:24503-24522 None:intergenic 65.0%
GTCCGTGTGTTGTGGAGGGG+CGG - tig0035540:24504-24523 None:intergenic 65.0%
GCTGGGCCTTCTGTTGCAGC+TGG - tig0035540:24981-25000 None:intergenic 65.0%
GCCCGCCCCTCCACAACACA+CGG + tig0035540:24499-24518 Msa1454960:intron 70.0%
Chromosome Type Strat End Strand Name
tig0035540 gene 19866 26000 19866 ID=Msa1454960;Name=Msa1454960
tig0035540 mRNA 19866 26000 19866 ID=Msa1454960-mRNA-1;Parent=Msa1454960;Name=Msa1454960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=193|1|1|1|0.5|0.6|5|0|178
tig0035540 exon 19866 20242 19866 ID=Msa1454960-mRNA-1:exon:20040;Parent=Msa1454960-mRNA-1
tig0035540 exon 22412 22581 22412 ID=Msa1454960-mRNA-1:exon:20041;Parent=Msa1454960-mRNA-1
tig0035540 exon 23198 23256 23198 ID=Msa1454960-mRNA-1:exon:20042;Parent=Msa1454960-mRNA-1
tig0035540 exon 25780 25805 25780 ID=Msa1454960-mRNA-1:exon:20043;Parent=Msa1454960-mRNA-1
tig0035540 exon 25906 26000 25906 ID=Msa1454960-mRNA-1:exon:20044;Parent=Msa1454960-mRNA-1
tig0035540 five_prime_UTR 19866 20058 19866 ID=Msa1454960-mRNA-1:five_prime_utr;Parent=Msa1454960-mRNA-1
tig0035540 CDS 20059 20242 20059 ID=Msa1454960-mRNA-1:cds;Parent=Msa1454960-mRNA-1
tig0035540 CDS 22412 22581 22412 ID=Msa1454960-mRNA-1:cds;Parent=Msa1454960-mRNA-1
tig0035540 CDS 23198 23256 23198 ID=Msa1454960-mRNA-1:cds;Parent=Msa1454960-mRNA-1
tig0035540 CDS 25780 25805 25780 ID=Msa1454960-mRNA-1:cds;Parent=Msa1454960-mRNA-1
tig0035540 CDS 25906 26000 25906 ID=Msa1454960-mRNA-1:cds;Parent=Msa1454960-mRNA-1
Gene Sequence

>Msa1454960

ATGGGTCTTGGTAACGAAGAAGAAGACGATAACAATAATAATAATAATAATAATCATAATAAGGTTGTTGATGAAGGAAGCAAGTCTTTAGGGTCAGTGTCTTGTTCAATTTGTCTTGAGGTTGTTACCGATAATGGTGATAGATCCTTCGCTAAGCTTCTTTGTGGTCATCAATTTCATCTTGATTGCATTGGTTCAGCATTCAATATAAAAGGAGCAATGCAATGTCCTAATTGTCGGAAGATTGAAAAAGGGCAATGGCTTTATGCTAATGGTTCTCGGTCATATCCAGAATTCAGCATGGATGACTGGACGCATGATGAGGACCTATATGATCTTAGCTACTCTGAAATGTCATTTGGAGTTCATTGGTGCCCATTTGGCAACATGGCACGACTTCCATCATCTTTCGAGGAAGGCGAATTTTCATCGATTGCATATCCTGATATAATTGGACAACATGCTGCATTTGCTGAACATACGGCCGTATCATCTGCTAGTCATCCCTGCCCGTATGTTGCTTACTTTGGACCA

Protein sequence

>Msa1454960

MGLGNEEEDDNNNNNNNNHNKVVDEGSKSLGSVSCSICLEVVTDNGDRSFAKLLCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGSRSYPEFSMDDWTHDEDLYDLSYSEMSFGVHWCPFGNMARLPSSFEEGEFSSIAYPDIIGQHAAFAEHTAVSSASHPCPYVAYFGP