AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0898830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0898830 MtrunA17_Chr6g0484641 89.655 174 15 2 1 174 1 171 4.67e-105 298
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0898830 AT1G73885.1 40.541 185 92 10 1 173 1 179 1.52e-26 100

Find 70 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCTAGATTGTAATTTA+TGG 0.123274 6_1:-93457849 None:intergenic
TGAAATTTAGAGTTGATATT+TGG 0.189417 6_1:+93458217 Msa0898830:three_prime_UTR
TTGGATTCAAATGTTGAATA+TGG 0.194234 6_1:+93458236 Msa0898830:three_prime_UTR
TATACACTTTAGGCCTTGTT+TGG 0.281238 6_1:+93458397 Msa0898830:three_prime_UTR
GGAGAATGGTTGTGGATTCT+TGG 0.288850 6_1:+93455980 Msa0898830:CDS
GGTATGTTTGCTTGTATCTA+TGG 0.292996 6_1:-93458003 None:intergenic
AAAGAGCCTGATTTCTTTGA+AGG 0.327839 6_1:+93455929 Msa0898830:CDS
TGATTCACTTAAGTTATGTT+TGG 0.348540 6_1:+93458345 Msa0898830:three_prime_UTR
TCTACCAACATATACACTTT+AGG 0.348982 6_1:+93458387 Msa0898830:three_prime_UTR
CTTATTGCACTCAATTTGTA+AGG 0.365549 6_1:+93458068 Msa0898830:three_prime_UTR
CAACAGTGGTTGTTGGTTGT+TGG 0.374252 6_1:-93455817 None:intergenic
TGGAATACTGTTGGGTTTGT+TGG 0.381813 6_1:+93455959 Msa0898830:CDS
ATGTCCGATTCAGATGTTTC+AGG 0.388886 6_1:-93457932 None:intergenic
AATATGGATAGTGGTTTGTA+TGG 0.398965 6_1:+93458252 Msa0898830:three_prime_UTR
ATCATCATCACTTTCTCTAA+TGG 0.401728 6_1:+93455643 Msa0898830:exon
CAAATGTTGAATATGGATAG+TGG 0.416010 6_1:+93458243 Msa0898830:three_prime_UTR
GGTATTTCAACTTCATTCCT+TGG 0.418384 6_1:-93455854 None:intergenic
TCCTCATCAACAGTGGTTGT+TGG 0.422081 6_1:-93455824 None:intergenic
ATATCAACTCTAAATTTCAA+TGG 0.429258 6_1:-93458213 None:intergenic
GTTCTTCTTCTTGAAGAAGA+TGG 0.430048 6_1:-93455746 None:intergenic
GCAGCCATAAATTACAATCT+AGG 0.431465 6_1:+93457845 Msa0898830:CDS
AGGAAGTAATAACGTTTGTA+TGG 0.434209 6_1:-93455608 None:intergenic
TTCTTGAAGAAGATGGTTGT+AGG 0.434747 6_1:-93455739 None:intergenic
ATACACTTTAGGCCTTGTTT+GGG 0.443269 6_1:+93458398 Msa0898830:three_prime_UTR
TGAGGACCTTCAAAGAAATC+AGG 0.443462 6_1:-93455935 None:intergenic
TGATTGCAGGTACTCGGTGG+TGG 0.443641 6_1:+93457818 Msa0898830:intron
GGTTTGTTGGAGAATGGTTG+TGG 0.447045 6_1:+93455972 Msa0898830:CDS
TAAGGAAACTCCTGCATACA+AGG 0.456201 6_1:+93457880 Msa0898830:CDS
CTGTTGGGTTTGTTGGAGAA+TGG 0.461075 6_1:+93455966 Msa0898830:CDS
AGATGGTTGTAGGAGGGTGT+AGG 0.465259 6_1:-93455729 None:intergenic
GGTGTAGGGTGTTGTTGTGG+TGG 0.465718 6_1:-93455714 None:intergenic
GAAAGTGATGATGATGTTGT+AGG 0.471955 6_1:-93455635 None:intergenic
GATGGTTGTAGGAGGGTGTA+GGG 0.481591 6_1:-93455728 None:intergenic
GAGGGTGTAGGGTGTTGTTG+TGG 0.482266 6_1:-93455717 None:intergenic
GTCCTCAGTGGAATACTGTT+GGG 0.482795 6_1:+93455951 Msa0898830:CDS
ACAACCTGAAACATCTGAAT+CGG 0.485907 6_1:+93457928 Msa0898830:CDS
TTGTGGTGGTCTTGTTGTAG+AGG 0.490468 6_1:-93455700 None:intergenic
TGTTTGCTTGTATCTATGGA+TGG 0.492165 6_1:-93457999 None:intergenic
GTAGCTACATGCGGTGGTGC+AGG 0.492658 6_1:+93455674 Msa0898830:CDS
AGGAGCTACCTCTGTAGGAT+TGG 0.496936 6_1:-93457963 None:intergenic
GACTGAGATTCCTTGTATGC+AGG 0.497420 6_1:-93457890 None:intergenic
CCAGGAGGTCTCCATTCAAA+AGG 0.515241 6_1:-93455899 None:intergenic
AGATTTCTTCACGTTCAAGA+AGG 0.538426 6_1:+93455792 Msa0898830:CDS
GGTCCTCAGTGGAATACTGT+TGG 0.542352 6_1:+93455950 Msa0898830:CDS
TGAAGAAGATGGTTGTAGGA+GGG 0.544992 6_1:-93455735 None:intergenic
CAATCTTCATCAGAGTAAAA+CGG 0.547523 6_1:-93455875 None:intergenic
TCATCGTGATTGCAGGTACT+CGG 0.560112 6_1:+93457812 Msa0898830:intron
TGCACCACCGCATGTAGCTA+CGG 0.561836 6_1:-93455672 None:intergenic
GAATGGTTGTGGATTCTTGG+TGG 0.562063 6_1:+93455983 Msa0898830:CDS
ACCAACAACCACTGTTGATG+AGG 0.563474 6_1:+93455823 Msa0898830:CDS
TTCTATTTCCTCATCAACAG+TGG 0.566937 6_1:-93455831 None:intergenic
TTATTAAGTTCTCCCAAACA+AGG 0.578223 6_1:-93458410 None:intergenic
GATTGCAGGTACTCGGTGGT+GGG 0.579381 6_1:+93457819 Msa0898830:intron
TGGATGGACTAGTTCAAACT+AGG 0.580396 6_1:-93457983 None:intergenic
TTGAAGAAGATGGTTGTAGG+AGG 0.580456 6_1:-93455736 None:intergenic
TCAGGCTCTTTGTAAGTACC+AGG 0.580767 6_1:-93455917 None:intergenic
CTGAGGCAAAATTGTCGTGT+TGG 0.595005 6_1:+93458132 Msa0898830:three_prime_UTR
AAGGCCTAAAGTGTATATGT+TGG 0.608192 6_1:-93458391 None:intergenic
ACAGACAATAACTATGCTTG+AGG 0.609619 6_1:-93455578 None:intergenic
ATTTCTTTGAAGGTCCTCAG+TGG 0.623902 6_1:+93455939 Msa0898830:CDS
GATTCATATATGCTAAAACA+AGG 0.637122 6_1:-93458024 None:intergenic
ATGATGATGTTGTAGGAACA+AGG 0.639639 6_1:-93455628 None:intergenic
ACTTAAGTGTATCAATTCTG+AGG 0.669053 6_1:+93458115 Msa0898830:three_prime_UTR
GCATTCACCGTAGCTACATG+CGG 0.676586 6_1:+93455665 Msa0898830:CDS
TCGTGATTGCAGGTACTCGG+TGG 0.679621 6_1:+93457815 Msa0898830:intron
TTCACCGTAGCTACATGCGG+TGG 0.691064 6_1:+93455668 Msa0898830:CDS
GGCTCTTTGTAAGTACCAGG+AGG 0.691981 6_1:-93455914 None:intergenic
TTGATGAGGAAATAGAACCA+AGG 0.699980 6_1:+93455837 Msa0898830:CDS
ATTCGAGTCCAATCCTACAG+AGG 0.715767 6_1:+93457955 Msa0898830:CDS
AACCCAACAGTATTCCACTG+AGG 0.795226 6_1:-93455953 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGTATAAGAAGAAATT+TGG + chr6_1:93457205-93457224 Msa0898830:intron 15.0%
!!! TATTTTTATGAACTTGTTTT+AGG - chr6_1:93457307-93457326 None:intergenic 15.0%
!! TTAGCTTCTTACAAAAAAAA+AGG + chr6_1:93456369-93456388 Msa0898830:intron 20.0%
!!! TTTTGATTGACTGATTTTTT+TGG + chr6_1:93456673-93456692 Msa0898830:intron 20.0%
!!! TTTTGGTATAAGAAGAAATT+TGG + chr6_1:93456690-93456709 Msa0898830:intron 20.0%
!!! ACTTAGTTCATATTTTGAAT+TGG - chr6_1:93456899-93456918 None:intergenic 20.0%
!! ACATTTAAATAACCTAGTTA+TGG - chr6_1:93457374-93457393 None:intergenic 20.0%
!! ACTAGGTTATTTAAATGTTA+AGG + chr6_1:93457376-93457395 Msa0898830:intron 20.0%
!! ATAATATTGCAAAACAATTG+TGG - chr6_1:93457450-93457469 None:intergenic 20.0%
!!! TAATTTTATCTTCGAAAACT+TGG - chr6_1:93457542-93457561 None:intergenic 20.0%
!!! TAATCTATTTAGGAAGTTTT+TGG - chr6_1:93457701-93457720 None:intergenic 20.0%
!! AAAAACTTCCTAAATAGATT+AGG + chr6_1:93457700-93457719 Msa0898830:intron 20.0%
!! ACTGAAAAAAATATACAACA+CGG - chr6_1:93458161-93458180 None:intergenic 20.0%
!! ATATCAACTCTAAATTTCAA+TGG - chr6_1:93458216-93458235 None:intergenic 20.0%
!!! TGAAATTTAGAGTTGATATT+TGG + chr6_1:93458217-93458236 Msa0898830:three_prime_UTR 20.0%
!!! TACTATTTTGTTACAAATGT+TGG + chr6_1:93458309-93458328 Msa0898830:three_prime_UTR 20.0%
!! CTTGAGTATTAGAAGAATTT+TGG + chr6_1:93456113-93456132 Msa0898830:intron 25.0%
! ATAAGTTGTTTATCCAAACA+GGG - chr6_1:93456151-93456170 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+AGG - chr6_1:93456152-93456171 None:intergenic 25.0%
! AGTTAAAATGTTTCGATACA+AGG + chr6_1:93456255-93456274 Msa0898830:intron 25.0%
! GTTAAAATGTTTCGATACAA+GGG + chr6_1:93456256-93456275 Msa0898830:intron 25.0%
!! TGTTTTCATAAGTATCTTGA+AGG + chr6_1:93456399-93456418 Msa0898830:intron 25.0%
!! GTTTTCATAAGTATCTTGAA+GGG + chr6_1:93456400-93456419 Msa0898830:intron 25.0%
! GTATTGTGCTTGAATATTAA+TGG - chr6_1:93456562-93456581 None:intergenic 25.0%
! TACTACTAGGTTTCTATATT+AGG - chr6_1:93456645-93456664 None:intergenic 25.0%
!!! AGTTAACTTTTGAGTTTATC+TGG + chr6_1:93456723-93456742 Msa0898830:intron 25.0%
!!! TAGTTCATATTTTGAATTGG+CGG - chr6_1:93456896-93456915 None:intergenic 25.0%
! TCATAAGTAACTAGAACAAT+TGG + chr6_1:93456959-93456978 Msa0898830:intron 25.0%
! CATAAGTAACTAGAACAATT+GGG + chr6_1:93456960-93456979 Msa0898830:intron 25.0%
! TAGTATAAGAAGAAATTTGG+AGG + chr6_1:93457208-93457227 Msa0898830:intron 25.0%
! CGAAGATAAAATTACTTATG+TGG + chr6_1:93457548-93457567 Msa0898830:intron 25.0%
! GATTCATATATGCTAAAACA+AGG - chr6_1:93458027-93458046 None:intergenic 25.0%
!!! GTTTGAAATTTTCATTCACT+TGG - chr6_1:93458049-93458068 None:intergenic 25.0%
! CTGAAAAAAATATACAACAC+GGG - chr6_1:93458160-93458179 None:intergenic 25.0%
! TTGGATTCAAATGTTGAATA+TGG + chr6_1:93458236-93458255 Msa0898830:three_prime_UTR 25.0%
! TGATTCACTTAAGTTATGTT+TGG + chr6_1:93458345-93458364 Msa0898830:three_prime_UTR 25.0%
AGGAAGTAATAACGTTTGTA+TGG - chr6_1:93455611-93455630 None:intergenic 30.0%
ATCATCATCACTTTCTCTAA+TGG + chr6_1:93455643-93455662 Msa0898830:exon 30.0%
CAATCTTCATCAGAGTAAAA+CGG - chr6_1:93455878-93455897 None:intergenic 30.0%
! TTTGTTTGTTGCTGAATTGT+TGG + chr6_1:93456050-93456069 Msa0898830:intron 30.0%
GCTTGAATATTAATGGTTGT+TGG - chr6_1:93456555-93456574 None:intergenic 30.0%
GATCGAAATATTAGATCATG+TGG - chr6_1:93457048-93457067 None:intergenic 30.0%
TCTAATATTTCGATCCATCT+TGG + chr6_1:93457053-93457072 Msa0898830:intron 30.0%
TCGCAAAATAGCAAAAGAAA+AGG - chr6_1:93457106-93457125 None:intergenic 30.0%
AGTTTCTGCTAATGAATTGT+AGG + chr6_1:93457139-93457158 Msa0898830:intron 30.0%
TATAAGAAGAAATTTGGAGG+AGG + chr6_1:93457211-93457230 Msa0898830:intron 30.0%
TGGTCAAATATAGTATCATG+CGG - chr6_1:93457430-93457449 None:intergenic 30.0%
GCAGAGCAATAAAATTTGAA+AGG - chr6_1:93457606-93457625 None:intergenic 30.0%
! GTTTGTTGAATTTAAGCACA+AGG + chr6_1:93457639-93457658 Msa0898830:intron 30.0%
CAAACATGCCTAATCTATTT+AGG - chr6_1:93457711-93457730 None:intergenic 30.0%
CTTGTCATATATCAACATGT+AGG + chr6_1:93457763-93457782 Msa0898830:intron 30.0%
TGCTCCTAGATTGTAATTTA+TGG - chr6_1:93457852-93457871 None:intergenic 30.0%
CTTATTGCACTCAATTTGTA+AGG + chr6_1:93458068-93458087 Msa0898830:three_prime_UTR 30.0%
ACTTAAGTGTATCAATTCTG+AGG + chr6_1:93458115-93458134 Msa0898830:three_prime_UTR 30.0%
CAAATGTTGAATATGGATAG+TGG + chr6_1:93458243-93458262 Msa0898830:three_prime_UTR 30.0%
! AATATGGATAGTGGTTTGTA+TGG + chr6_1:93458252-93458271 Msa0898830:three_prime_UTR 30.0%
TCTACCAACATATACACTTT+AGG + chr6_1:93458387-93458406 Msa0898830:three_prime_UTR 30.0%
ACAGACAATAACTATGCTTG+AGG - chr6_1:93455581-93455600 None:intergenic 35.0%
! ATGATGATGTTGTAGGAACA+AGG - chr6_1:93455631-93455650 None:intergenic 35.0%
! GAAAGTGATGATGATGTTGT+AGG - chr6_1:93455638-93455657 None:intergenic 35.0%
TTCTTGAAGAAGATGGTTGT+AGG - chr6_1:93455742-93455761 None:intergenic 35.0%
GTTCTTCTTCTTGAAGAAGA+TGG - chr6_1:93455749-93455768 None:intergenic 35.0%
AGATTTCTTCACGTTCAAGA+AGG + chr6_1:93455792-93455811 Msa0898830:CDS 35.0%
TTCTATTTCCTCATCAACAG+TGG - chr6_1:93455834-93455853 None:intergenic 35.0%
TTGATGAGGAAATAGAACCA+AGG + chr6_1:93455837-93455856 Msa0898830:CDS 35.0%
GGTATTTCAACTTCATTCCT+TGG - chr6_1:93455857-93455876 None:intergenic 35.0%
! CGTTTTACTCTGATGAAGAT+TGG + chr6_1:93455876-93455895 Msa0898830:CDS 35.0%
!!! ATGAAGATTGGCCTTTTGAA+TGG + chr6_1:93455888-93455907 Msa0898830:CDS 35.0%
AAAGAGCCTGATTTCTTTGA+AGG + chr6_1:93455929-93455948 Msa0898830:CDS 35.0%
GAAGAATATATGACCCTGTT+TGG + chr6_1:93456135-93456154 Msa0898830:intron 35.0%
CAACTTATTGTGCAGCTTAT+AGG + chr6_1:93456163-93456182 Msa0898830:intron 35.0%
CTTGAAGGGTTTGTGATATA+CGG + chr6_1:93456414-93456433 Msa0898830:intron 35.0%
CTGATGACTGATATCATATC+AGG - chr6_1:93456515-93456534 None:intergenic 35.0%
CAAAATGCACACATACTACT+AGG - chr6_1:93456658-93456677 None:intergenic 35.0%
CACTTATCTAGGAACATGTT+TGG + chr6_1:93456755-93456774 Msa0898830:intron 35.0%
TAGGAACATGTTTGGATTGA+CGG + chr6_1:93456763-93456782 Msa0898830:intron 35.0%
TTTGAACTTTGACGAAAGCA+CGG + chr6_1:93456790-93456809 Msa0898830:intron 35.0%
AGTAACTAGAACAATTGGGT+TGG + chr6_1:93456964-93456983 Msa0898830:intron 35.0%
TAGATCATGTGGCAACAATT+AGG - chr6_1:93457037-93457056 None:intergenic 35.0%
ACTGCAGCACATAGATAAAT+GGG - chr6_1:93457335-93457354 None:intergenic 35.0%
TACTGCAGCACATAGATAAA+TGG - chr6_1:93457336-93457355 None:intergenic 35.0%
ATCTATGTGCTGCAGTATTA+AGG + chr6_1:93457339-93457358 Msa0898830:intron 35.0%
! AGGTTTTTCATGCCATAACT+AGG + chr6_1:93457359-93457378 Msa0898830:intron 35.0%
TATAAGTTCATCGTGATTGC+AGG + chr6_1:93457805-93457824 Msa0898830:intron 35.0%
GCAGCCATAAATTACAATCT+AGG + chr6_1:93457845-93457864 Msa0898830:CDS 35.0%
!!! TCTAGGAGCATCAGATTTTA+AGG + chr6_1:93457862-93457881 Msa0898830:CDS 35.0%
ACAACCTGAAACATCTGAAT+CGG + chr6_1:93457928-93457947 Msa0898830:CDS 35.0%
TGTTTGCTTGTATCTATGGA+TGG - chr6_1:93458002-93458021 None:intergenic 35.0%
GGTATGTTTGCTTGTATCTA+TGG - chr6_1:93458006-93458025 None:intergenic 35.0%
!!! GTGTTTTGATCTGCTTTGTT+TGG + chr6_1:93458284-93458303 Msa0898830:three_prime_UTR 35.0%
AAGGCCTAAAGTGTATATGT+TGG - chr6_1:93458394-93458413 None:intergenic 35.0%
!! TATACACTTTAGGCCTTGTT+TGG + chr6_1:93458397-93458416 Msa0898830:three_prime_UTR 35.0%
!! ATACACTTTAGGCCTTGTTT+GGG + chr6_1:93458398-93458417 Msa0898830:three_prime_UTR 35.0%
TGAAGAAGATGGTTGTAGGA+GGG - chr6_1:93455738-93455757 None:intergenic 40.0%
TTGAAGAAGATGGTTGTAGG+AGG - chr6_1:93455739-93455758 None:intergenic 40.0%
TGAGGACCTTCAAAGAAATC+AGG - chr6_1:93455938-93455957 None:intergenic 40.0%
! ATTTCTTTGAAGGTCCTCAG+TGG + chr6_1:93455939-93455958 Msa0898830:CDS 40.0%
TGGAATACTGTTGGGTTTGT+TGG + chr6_1:93455959-93455978 Msa0898830:CDS 40.0%
!! GATTCTTGGTGGTCTTTTTG+CGG + chr6_1:93455994-93456013 Msa0898830:CDS 40.0%
CGGTATCTCACAAGTACTTA+TGG + chr6_1:93456434-93456453 Msa0898830:intron 40.0%
!! TCTTACGAGTTGGTTCTGTA+AGG + chr6_1:93456465-93456484 Msa0898830:intron 40.0%
TCATCAGAGCCTATCCATTA+AGG + chr6_1:93456528-93456547 Msa0898830:intron 40.0%
CATCAGAGCCTATCCATTAA+GGG + chr6_1:93456529-93456548 Msa0898830:intron 40.0%
TAATGGTTGTTGGCCCTTAA+TGG - chr6_1:93456545-93456564 None:intergenic 40.0%
GGCGACATAATCACTTATCT+AGG + chr6_1:93456744-93456763 Msa0898830:intron 40.0%
AGGAACATGTTTGGATTGAC+GGG + chr6_1:93456764-93456783 Msa0898830:intron 40.0%
TTTCTTGCCAAAATTGCGCT+GGG + chr6_1:93456848-93456867 Msa0898830:intron 40.0%
GATGTCTCACAACGTTATTG+TGG + chr6_1:93457404-93457423 Msa0898830:intron 40.0%
! GTTTAAAGCAGCGTTTCATC+AGG - chr6_1:93457477-93457496 None:intergenic 40.0%
TAAGGAAACTCCTGCATACA+AGG + chr6_1:93457880-93457899 Msa0898830:CDS 40.0%
ATGTCCGATTCAGATGTTTC+AGG - chr6_1:93457935-93457954 None:intergenic 40.0%
!! TGGATGGACTAGTTCAAACT+AGG - chr6_1:93457986-93458005 None:intergenic 40.0%
!! TTGTGGTGGTCTTGTTGTAG+AGG - chr6_1:93455703-93455722 None:intergenic 45.0%
! CAACAGTGGTTGTTGGTTGT+TGG - chr6_1:93455820-93455839 None:intergenic 45.0%
ACCAACAACCACTGTTGATG+AGG + chr6_1:93455823-93455842 Msa0898830:CDS 45.0%
TCCTCATCAACAGTGGTTGT+TGG - chr6_1:93455827-93455846 None:intergenic 45.0%
TCAGGCTCTTTGTAAGTACC+AGG - chr6_1:93455920-93455939 None:intergenic 45.0%
GTCCTCAGTGGAATACTGTT+GGG + chr6_1:93455951-93455970 Msa0898830:CDS 45.0%
AACCCAACAGTATTCCACTG+AGG - chr6_1:93455956-93455975 None:intergenic 45.0%
!! CTGTTGGGTTTGTTGGAGAA+TGG + chr6_1:93455966-93455985 Msa0898830:CDS 45.0%
!! GGTTTGTTGGAGAATGGTTG+TGG + chr6_1:93455972-93455991 Msa0898830:CDS 45.0%
GGAGAATGGTTGTGGATTCT+TGG + chr6_1:93455980-93455999 Msa0898830:CDS 45.0%
GAATGGTTGTGGATTCTTGG+TGG + chr6_1:93455983-93456002 Msa0898830:CDS 45.0%
ATGTTTCGATACAAGGGACC+TGG + chr6_1:93456262-93456281 Msa0898830:intron 45.0%
!! GTGGTATTGACTTGGGACTT+GGG + chr6_1:93456284-93456303 Msa0898830:intron 45.0%
GAATCGAACATGAGACCTTG+AGG - chr6_1:93456321-93456340 None:intergenic 45.0%
GTCTCATGTTCGATTCTCTC+CGG + chr6_1:93456325-93456344 Msa0898830:intron 45.0%
! TCTCCGGTGTCAATTTGAGT+GGG + chr6_1:93456341-93456360 Msa0898830:intron 45.0%
TAGCCCACTCAAATTGACAC+CGG - chr6_1:93456347-93456366 None:intergenic 45.0%
GGACTCATCATCTTACGAGT+TGG + chr6_1:93456455-93456474 Msa0898830:intron 45.0%
! GTTGTTGGCCCTTAATGGAT+AGG - chr6_1:93456540-93456559 None:intergenic 45.0%
CTCTCACGCTCAACACTATT+GGG - chr6_1:93456584-93456603 None:intergenic 45.0%
! CAATAGTGTTGAGCGTGAGA+GGG + chr6_1:93456583-93456602 Msa0898830:intron 45.0%
GGAACATGTTTGGATTGACG+GGG + chr6_1:93456765-93456784 Msa0898830:intron 45.0%
GTTTCTTGCCAAAATTGCGC+TGG + chr6_1:93456847-93456866 Msa0898830:intron 45.0%
TCGCGAAAACACAACCAAGA+TGG - chr6_1:93457070-93457089 None:intergenic 45.0%
TCATCGTGATTGCAGGTACT+CGG + chr6_1:93457812-93457831 Msa0898830:intron 45.0%
GACTGAGATTCCTTGTATGC+AGG - chr6_1:93457893-93457912 None:intergenic 45.0%
ATTCGAGTCCAATCCTACAG+AGG + chr6_1:93457955-93457974 Msa0898830:CDS 45.0%
AAACTAGGAGCTACCTCTGT+AGG - chr6_1:93457971-93457990 None:intergenic 45.0%
CTGAGGCAAAATTGTCGTGT+TGG + chr6_1:93458132-93458151 Msa0898830:three_prime_UTR 45.0%
GCATTCACCGTAGCTACATG+CGG + chr6_1:93455665-93455684 Msa0898830:CDS 50.0%
! GATGGTTGTAGGAGGGTGTA+GGG - chr6_1:93455731-93455750 None:intergenic 50.0%
! AGATGGTTGTAGGAGGGTGT+AGG - chr6_1:93455732-93455751 None:intergenic 50.0%
CCAGGAGGTCTCCATTCAAA+AGG - chr6_1:93455902-93455921 None:intergenic 50.0%
! CCTTTTGAATGGAGACCTCC+TGG + chr6_1:93455899-93455918 Msa0898830:CDS 50.0%
GGCTCTTTGTAAGTACCAGG+AGG - chr6_1:93455917-93455936 None:intergenic 50.0%
GGTCCTCAGTGGAATACTGT+TGG + chr6_1:93455950-93455969 Msa0898830:CDS 50.0%
TTTCGATACAAGGGACCTGG+TGG + chr6_1:93456265-93456284 Msa0898830:intron 50.0%
!! GGACCTGGTGGTATTGACTT+GGG + chr6_1:93456277-93456296 Msa0898830:intron 50.0%
AGTCCCAAGTCAATACCACC+AGG - chr6_1:93456283-93456302 None:intergenic 50.0%
!! GGTGGTATTGACTTGGGACT+TGG + chr6_1:93456283-93456302 Msa0898830:intron 50.0%
TCGAACATGAGACCTTGAGG+AGG - chr6_1:93456318-93456337 None:intergenic 50.0%
! CTCTCCGGTGTCAATTTGAG+TGG + chr6_1:93456340-93456359 Msa0898830:intron 50.0%
CCTCTCACGCTCAACACTAT+TGG - chr6_1:93456585-93456604 None:intergenic 50.0%
! CCAATAGTGTTGAGCGTGAG+AGG + chr6_1:93456582-93456601 Msa0898830:intron 50.0%
! TGAGAGGGTGTATGCGTGAA+GGG + chr6_1:93456598-93456617 Msa0898830:intron 50.0%
TATGCGTGAAGGGGCTTACT+GGG + chr6_1:93456608-93456627 Msa0898830:intron 50.0%
! CAGATGACCCAGCGCAATTT+TGG - chr6_1:93456858-93456877 None:intergenic 50.0%
AATTGGCGGTGAGTCTGACA+TGG - chr6_1:93456882-93456901 None:intergenic 50.0%
AGGAGCTACCTCTGTAGGAT+TGG - chr6_1:93457966-93457985 None:intergenic 50.0%
TTCACCGTAGCTACATGCGG+TGG + chr6_1:93455668-93455687 Msa0898830:CDS 55.0%
TGCACCACCGCATGTAGCTA+CGG - chr6_1:93455675-93455694 None:intergenic 55.0%
!! GGTGTAGGGTGTTGTTGTGG+TGG - chr6_1:93455717-93455736 None:intergenic 55.0%
!! GAGGGTGTAGGGTGTTGTTG+TGG - chr6_1:93455720-93455739 None:intergenic 55.0%
!! GGGACCTGGTGGTATTGACT+TGG + chr6_1:93456276-93456295 Msa0898830:intron 55.0%
! TGGGAGTGTGTTCCTCCTCA+AGG + chr6_1:93456303-93456322 Msa0898830:intron 55.0%
! GTGAGAGGGTGTATGCGTGA+AGG + chr6_1:93456597-93456616 Msa0898830:intron 55.0%
! GAGAGGGTGTATGCGTGAAG+GGG + chr6_1:93456599-93456618 Msa0898830:intron 55.0%
GTATGCGTGAAGGGGCTTAC+TGG + chr6_1:93456607-93456626 Msa0898830:intron 55.0%
ATGCGTGAAGGGGCTTACTG+GGG + chr6_1:93456609-93456628 Msa0898830:intron 55.0%
TCGTGATTGCAGGTACTCGG+TGG + chr6_1:93457815-93457834 Msa0898830:intron 55.0%
! TGATTGCAGGTACTCGGTGG+TGG + chr6_1:93457818-93457837 Msa0898830:intron 55.0%
! GATTGCAGGTACTCGGTGGT+GGG + chr6_1:93457819-93457838 Msa0898830:intron 55.0%
GTAGCTACATGCGGTGGTGC+AGG + chr6_1:93455674-93455693 Msa0898830:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 93455562 93458428 93455562 ID=Msa0898830;Name=Msa0898830
chr6_1 mRNA 93455562 93458428 93455562 ID=Msa0898830-mRNA-1;Parent=Msa0898830;Name=Msa0898830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=100|1|1|1|1|1|2|431|174
chr6_1 exon 93455562 93456015 93455562 ID=Msa0898830-mRNA-1:exon:15856;Parent=Msa0898830-mRNA-1
chr6_1 exon 93457827 93458428 93457827 ID=Msa0898830-mRNA-1:exon:15857;Parent=Msa0898830-mRNA-1
chr6_1 five_prime_UTR 93455562 93455661 93455562 ID=Msa0898830-mRNA-1:five_prime_utr;Parent=Msa0898830-mRNA-1
chr6_1 CDS 93455662 93456015 93455662 ID=Msa0898830-mRNA-1:cds;Parent=Msa0898830-mRNA-1
chr6_1 CDS 93457827 93457997 93457827 ID=Msa0898830-mRNA-1:cds;Parent=Msa0898830-mRNA-1
chr6_1 three_prime_UTR 93457998 93458428 93457998 ID=Msa0898830-mRNA-1:three_prime_utr;Parent=Msa0898830-mRNA-1
Gene Sequence

>Msa0898830

ATGGCATTCACCGTAGCTACATGCGGTGGTGCAGGAATCCTCTACAACAAGACCACCACAACAACACCCTACACCCTCCTACAACCATCTTCTTCAAGAAGAAGAACACTTCACATAGTTTCAGCTAAGAAGATTTCTTCACGTTCAAGAAGGAACCAACAACCAACAACCACTGTTGATGAGGAAATAGAACCAAGGAATGAAGTTGAAATACCGTTTTACTCTGATGAAGATTGGCCTTTTGAATGGAGACCTCCTGGTACTTACAAAGAGCCTGATTTCTTTGAAGGTCCTCAGTGGAATACTGTTGGGTTTGTTGGAGAATGGTTGTGGATTCTTGGTGGTCTTTTTGCGGTACTCGGTGGTGGGTATGCAGCCATAAATTACAATCTAGGAGCATCAGATTTTAAGGAAACTCCTGCATACAAGGAATCTCAGTCTCAAGAACTTTTAGAACAACCTGAAACATCTGAATCGGACATATTCGAGTCCAATCCTACAGAGGTAGCTCCTAGTTTGAACTAG

Protein sequence

>Msa0898830

MAFTVATCGGAGILYNKTTTTTPYTLLQPSSSRRRTLHIVSAKKISSRSRRNQQPTTTVDEEIEPRNEVEIPFYSDEDWPFEWRPPGTYKEPDFFEGPQWNTVGFVGEWLWILGGLFAVLGGGYAAINYNLGASDFKETPAYKESQSQELLEQPETSESDIFESNPTEVAPSLN*