AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1149570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1149570 MtrunA17_Chr7g0238741 92.462 199 15 0 3 201 47 245 1.96e-129 377
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 165 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACACTCTCCACTCATTT+TGG 0.132312 7_4:-31517377 None:intergenic
TCCTTAACCTTTATTGTATC+TGG 0.203390 7_4:-31519636 None:intergenic
AAGGGACTAGTTAGCAAATT+AGG 0.216610 7_4:+31517278 Msa1149570:five_prime_UTR
TCTTCTTGTACAAGGGTTAA+TGG 0.231394 7_4:+31520122 Msa1149570:three_prime_UTR
GAACCAATAGTTGCAGTTTC+AGG 0.263237 7_4:-31520625 None:intergenic
GTTCACGACCAAAACTTTCT+AGG 0.280251 7_4:+31521374 Msa1149570:three_prime_UTR
GAATCAAGTAGGATCGTTTA+AGG 0.284561 7_4:+31519044 Msa1149570:CDS
AGCTAATGCATCCATGTTAA+TGG 0.287279 7_4:-31521836 None:intergenic
GTTACATTTACCATACCTTA+TGG 0.298261 7_4:+31523064 Msa1149570:three_prime_UTR
TCATTCTTTATGATTATTGA+TGG 0.309675 7_4:+31519941 Msa1149570:three_prime_UTR
ACCTTTATTGTATCTGGTGG+TGG 0.323994 7_4:-31519630 None:intergenic
GTTCCATACCGGCGTAAATC+AGG 0.326139 7_4:+31521862 Msa1149570:three_prime_UTR
CATACCTTATGGTCAAATAT+TGG 0.326860 7_4:+31523075 Msa1149570:three_prime_UTR
CCTAAAACAGGTAAAGGTTT+GGG 0.326983 7_4:+31523009 Msa1149570:three_prime_UTR
TTCGCCGAAGCAGCATTATC+AGG 0.328575 7_4:-31518973 None:intergenic
ATAACTACACTAAATCTTTC+TGG 0.334579 7_4:-31522915 None:intergenic
CCCTAAAACAGGTAAAGGTT+TGG 0.338648 7_4:+31523008 Msa1149570:three_prime_UTR
AATGGTTACCTAGAAAGTTT+TGG 0.349626 7_4:-31521382 None:intergenic
TCTACTTCTAGAACCGAAAA+TGG 0.357304 7_4:-31521919 None:intergenic
ATGATTATAATTTGACCATA+TGG 0.358478 7_4:+31523042 Msa1149570:three_prime_UTR
CCGAAAATGGCCTCCTGATT+CGG 0.370780 7_4:-31521906 None:intergenic
TCATGTTTCCCTTGCAAACT+AGG 0.375599 7_4:-31519117 None:intergenic
AATTTATATTTCCCTAAAAC+AGG 0.376080 7_4:+31522997 Msa1149570:three_prime_UTR
ATTGTATCTGGTGGTGGGTC+AGG 0.376926 7_4:-31519624 None:intergenic
GATGACAAACGTCATAGGTT+AGG 0.387281 7_4:+31521280 Msa1149570:three_prime_UTR
TACCGAATGGTTCCGGTACT+AGG 0.387844 7_4:+31519532 Msa1149570:CDS
ATTCAATTGTACCTCTTCAT+AGG 0.387946 7_4:-31523208 None:intergenic
GCATTGTTGTTGAGACCAAT+AGG 0.397180 7_4:-31522798 None:intergenic
GATTCTTTACCGAATGGTTC+CGG 0.397478 7_4:+31519525 Msa1149570:CDS
TTCTTTCTTCATACGTAAGA+AGG 0.399341 7_4:-31522846 None:intergenic
TCTTATCTGCTCATGCCTAT+TGG 0.403689 7_4:+31522783 Msa1149570:three_prime_UTR
ACTTTGGACAGCGCCGAATC+AGG 0.407176 7_4:+31521893 Msa1149570:three_prime_UTR
CATTGGAGGGCCGTTTCAGC+AGG 0.407601 7_4:+31519496 Msa1149570:CDS
TCGAGAAGCTCTTGAGGAAC+AGG 0.408362 7_4:-31522755 None:intergenic
ATACCTGAAACTGCAACTAT+TGG 0.409414 7_4:+31520622 Msa1149570:three_prime_UTR
CACGTAGGCATCCTTCTTCA+AGG 0.423941 7_4:+31521205 Msa1149570:three_prime_UTR
TTTCCTACCATTACAACCCT+TGG 0.429959 7_4:-31520317 None:intergenic
ACCAGATACAATAAAGGTTA+AGG 0.432280 7_4:+31519635 Msa1149570:CDS
AGAAGTAGAAGCTTTGGTTC+AGG 0.435287 7_4:+31521933 Msa1149570:three_prime_UTR
CTTACCAATATTTGACCATA+AGG 0.438301 7_4:-31523079 None:intergenic
GGTTCTAGAAGTAGAAGCTT+TGG 0.440736 7_4:+31521927 Msa1149570:three_prime_UTR
CAGTTGATTCTTCTTGTACA+AGG 0.447047 7_4:+31520114 Msa1149570:three_prime_UTR
AACTCTGAGTCTTCTGCAAA+AGG 0.448193 7_4:-31518945 None:intergenic
CACTGGCTTGAATCACAATT+CGG 0.449184 7_4:-31519744 None:intergenic
CCTTTATTGTATCTGGTGGT+GGG 0.454587 7_4:-31519629 None:intergenic
AAGGAGGAGCAATTTGAGAA+TGG 0.454790 7_4:+31519063 Msa1149570:CDS
TCTTTGTACCGAGTATAGTA+AGG 0.460741 7_4:-31517498 None:intergenic
CTGAAACGGCCCTCCAATGA+AGG 0.461967 7_4:-31519492 None:intergenic
ACTTGCAGTGAAGTTGTCTC+TGG 0.465134 7_4:+31519087 Msa1149570:CDS
TCATGTGGAGAAACCTTCAT+TGG 0.466265 7_4:+31519479 Msa1149570:CDS
CCCACCACCAGATACAATAA+AGG 0.467536 7_4:+31519629 Msa1149570:CDS
TATTTCCCTAAAACAGGTAA+AGG 0.469003 7_4:+31523003 Msa1149570:three_prime_UTR
AATCAAGATTCCTGCTGAAA+CGG 0.469109 7_4:-31519506 None:intergenic
TTGGTCGTGAACCAGTGGTT+AGG 0.470589 7_4:-31521363 None:intergenic
GACCCTTGTTTCCTAACCAC+TGG 0.473534 7_4:+31521352 Msa1149570:three_prime_UTR
CATGTCAAAGTGCCGAGCTC+TGG 0.477561 7_4:+31521801 Msa1149570:three_prime_UTR
CGTTCCTGATAATGCTGCTT+CGG 0.479497 7_4:+31518969 Msa1149570:CDS
CCTGAGTCCAAGGGTTGTAA+TGG 0.480044 7_4:+31520310 Msa1149570:three_prime_UTR
TGTATCTCGGGAACGTTCTA+CGG 0.481631 7_4:+31521702 Msa1149570:three_prime_UTR
AAGGAACATATAATGTATCT+CGG 0.482346 7_4:+31521689 Msa1149570:three_prime_UTR
ATTCTTTGAGTTCAGTTCAG+TGG 0.484041 7_4:-31519595 None:intergenic
ATCATCACAAACTAAGGAAC+CGG 0.484327 7_4:+31517445 Msa1149570:five_prime_UTR
CTCAAGATGACAAACGTCAT+AGG 0.485216 7_4:+31521275 Msa1149570:three_prime_UTR
TCGAACTTATGTCGATTTGA+AGG 0.486100 7_4:+31522111 Msa1149570:three_prime_UTR
TCGAAATTCTGCAGGATAAG+TGG 0.488393 7_4:+31522681 Msa1149570:intron
ATTAAGTAATTTCCTAGTAC+CGG 0.489621 7_4:-31519544 None:intergenic
TAATCTTCTTCCCTTGAAGA+AGG 0.490156 7_4:-31521216 None:intergenic
TATCTGCTTCAGATTCAAAC+AGG 0.493220 7_4:+31518252 Msa1149570:five_prime_UTR
GTATGGTAAATGTAACCATA+TGG 0.493229 7_4:-31523057 None:intergenic
ATGACAAACGTCATAGGTTA+GGG 0.494107 7_4:+31521281 Msa1149570:three_prime_UTR
AAATCAGGGAATTCCTACTT+TGG 0.494182 7_4:+31521877 Msa1149570:three_prime_UTR
ATCAATAATCATAAAGAATG+AGG 0.496095 7_4:-31519939 None:intergenic
CATGTTTCCCTTGCAAACTA+GGG 0.496574 7_4:-31519116 None:intergenic
TTTCATGACAGTCATCTTGA+AGG 0.501074 7_4:+31519315 Msa1149570:CDS
GAGTGGATCATCACAAACTA+AGG 0.504587 7_4:+31517439 Msa1149570:five_prime_UTR
CCATTACAACCCTTGGACTC+AGG 0.507069 7_4:-31520310 None:intergenic
ATGATGACGAAAACTTTGTT+CGG 0.512282 7_4:+31519571 Msa1149570:CDS
CACAGTTCCTGCCATTAACA+TGG 0.513821 7_4:+31521825 Msa1149570:three_prime_UTR
GATGCAAGTCCTTTCATGAA+TGG 0.516270 7_4:+31519657 Msa1149570:CDS
TTAACCTTTATTGTATCTGG+TGG 0.516316 7_4:-31519633 None:intergenic
GATAACAGTGTCTTCAACAT+GGG 0.518933 7_4:+31518274 Msa1149570:exon
CTCAACATGGTCTCCTCTCT+AGG 0.519368 7_4:+31521754 Msa1149570:three_prime_UTR
TTCCTAGTACCGGAACCATT+CGG 0.524514 7_4:-31519534 None:intergenic
CATCTTGAGATATCCCGGTC+TGG 0.533217 7_4:-31521261 None:intergenic
GACCATAAAACATATATCCT+AGG 0.535063 7_4:-31517535 None:intergenic
CATTAGCTGTGGTTCCATAC+CGG 0.536414 7_4:+31521851 Msa1149570:three_prime_UTR
AATCTTGATTCTTTACCGAA+TGG 0.536477 7_4:+31519519 Msa1149570:CDS
GTCTCCAAGTATAGTTGTCA+CGG 0.537258 7_4:-31521176 None:intergenic
GGTTCTCCTCTCCTTTGTTG+AGG 0.539618 7_4:-31522734 None:intergenic
CAATATTTGACCATAAGGTA+TGG 0.540732 7_4:-31523074 None:intergenic
GGATGTGTCCCTAGTTTGCA+AGG 0.546500 7_4:+31519108 Msa1149570:CDS
CATAAGTTCGATGCTTTGCA+TGG 0.547294 7_4:-31522099 None:intergenic
CAAAACTCTTCAATGATGCA+TGG 0.549128 7_4:+31519883 Msa1149570:three_prime_UTR
AGTTGATTCTTCTTGTACAA+GGG 0.551085 7_4:+31520115 Msa1149570:three_prime_UTR
ATAAAACATATATCCTAGGA+AGG 0.552936 7_4:-31517531 None:intergenic
TTATTTGCAGAGGACAGTAA+TGG 0.553373 7_4:+31521150 Msa1149570:intron
GTTCTATAAATCCATCAGAT+CGG 0.553470 7_4:-31519419 None:intergenic
AGGAACATATAATGTATCTC+GGG 0.554305 7_4:+31521690 Msa1149570:three_prime_UTR
AGTAAAACTTTGATCCAGAC+CGG 0.558827 7_4:+31521247 Msa1149570:three_prime_UTR
TTTGTCATCTTGAGATATCC+CGG 0.559326 7_4:-31521266 None:intergenic
AAAATTGAAAATTGTGCTGA+AGG 0.559691 7_4:+31521727 Msa1149570:three_prime_UTR
AGACATGTTAGACCCTTCCT+AGG 0.561581 7_4:+31517518 Msa1149570:five_prime_UTR
TAACTAAACCTTACTATACT+CGG 0.562035 7_4:+31517490 Msa1149570:five_prime_UTR
TCACTTCTTTGTTTAACATG+TGG 0.562145 7_4:-31517398 None:intergenic
GAAGCCGTGACAACTATACT+TGG 0.562287 7_4:+31521172 Msa1149570:three_prime_UTR
AGAAGTTCTTCCTGAGTCCA+AGG 0.567088 7_4:+31520300 Msa1149570:three_prime_UTR
AATGCATCCATGTTAATGGC+AGG 0.570258 7_4:-31521832 None:intergenic
GATTCGGCGCTGTCCAAAGT+AGG 0.570894 7_4:-31521890 None:intergenic
GAACCAGTGGTTAGGAAACA+AGG 0.575620 7_4:-31521355 None:intergenic
TTCCATACCGGCGTAAATCA+GGG 0.575681 7_4:+31521863 Msa1149570:three_prime_UTR
TTCATGACAGTCATCTTGAA+GGG 0.576236 7_4:+31519316 Msa1149570:CDS
TTGCTGCTATATGACTACAC+TGG 0.577842 7_4:-31519761 None:intergenic
TACACATACCACTATTCACT+AGG 0.579857 7_4:+31517669 Msa1149570:five_prime_UTR
AATGGCACGAACCATGGTAC+AGG 0.581155 7_4:+31520140 Msa1149570:three_prime_UTR
GATGAAATTCGATTATGTCT+CGG 0.581676 7_4:-31521316 None:intergenic
AGAATAACACAAAGGTGTGG+TGG 0.584093 7_4:+31517605 Msa1149570:five_prime_UTR
AGGGTTAATGGCACGAACCA+TGG 0.584303 7_4:+31520134 Msa1149570:three_prime_UTR
AAGGGAAACATGAAAATCAA+AGG 0.584574 7_4:+31519127 Msa1149570:CDS
GGATAACAGTGTCTTCAACA+TGG 0.584830 7_4:+31518273 Msa1149570:exon
GACAGTTGGTCTCACTGTCA+AGG 0.585006 7_4:+31520089 Msa1149570:three_prime_UTR
ATCTCTCCTCAACAAAGGAG+AGG 0.585008 7_4:+31522728 Msa1149570:three_prime_UTR
TGCAACTATTGGTTCGCTGA+AGG 0.585230 7_4:+31520633 Msa1149570:three_prime_UTR
TGTGGAGAAACCTTCATTGG+AGG 0.586442 7_4:+31519482 Msa1149570:CDS
CAGGAACTGTGACCAGAGCT+CGG 0.586900 7_4:-31521813 None:intergenic
GCATTGTTCCGCCTGTACCA+TGG 0.590636 7_4:-31520151 None:intergenic
GGTACAGGCGGAACAATGCA+TGG 0.593594 7_4:+31520155 Msa1149570:three_prime_UTR
ACTCTGTCGAGAAGCTCTTG+AGG 0.596757 7_4:-31522761 None:intergenic
AGCTGAAGCTTCTCCTAGAG+AGG 0.598142 7_4:-31521767 None:intergenic
GTGGAGAAACCTTCATTGGA+GGG 0.598653 7_4:+31519483 Msa1149570:CDS
TCATAGGTTAGGGTTCATGT+TGG 0.599261 7_4:+31521291 Msa1149570:three_prime_UTR
AGCTAAATACCATTCATGAA+AGG 0.599996 7_4:-31519666 None:intergenic
GCAGGATAAGTGGAAGACAT+TGG 0.603024 7_4:+31522691 Msa1149570:intron
ATAAAGAATGACCTATGAAG+AGG 0.608505 7_4:+31523197 Msa1149570:three_prime_UTR
AACAAACAAGAGAATCAAGT+AGG 0.610792 7_4:+31519033 Msa1149570:CDS
ACGTAGGCATCCTTCTTCAA+GGG 0.611020 7_4:+31521206 Msa1149570:three_prime_UTR
GAAGTTCTTCCTGAGTCCAA+GGG 0.612005 7_4:+31520301 Msa1149570:three_prime_UTR
CAAAGAAGTGACATAAAGCA+AGG 0.615451 7_4:+31517410 Msa1149570:five_prime_UTR
TAGCAAATTAGGAGAAGATG+TGG 0.618244 7_4:+31517289 Msa1149570:five_prime_UTR
CAAGAATCTCTCCTCAACAA+AGG 0.620660 7_4:+31522723 Msa1149570:three_prime_UTR
TACAAAGTGTTGTCAAATAG+CGG 0.626326 7_4:+31519835 Msa1149570:three_prime_UTR
AAGGACAAAATGTCATTGAG+AGG 0.626823 7_4:+31519340 Msa1149570:CDS
TAACATGGATGCATTAGCTG+TGG 0.627343 7_4:+31521840 Msa1149570:three_prime_UTR
AGGAATTCCCTGATTTACGC+CGG 0.631176 7_4:-31521870 None:intergenic
GGCACGAACCATGGTACAGG+CGG 0.636398 7_4:+31520143 Msa1149570:three_prime_UTR
TAAAACATATATCCTAGGAA+GGG 0.638779 7_4:-31517530 None:intergenic
TTGGACAGCGCCGAATCAGG+AGG 0.641138 7_4:+31521896 Msa1149570:three_prime_UTR
GACAGTCATCTTGAAGGGCA+AGG 0.644277 7_4:+31519321 Msa1149570:CDS
CATCGTCTACGTCTGACAGT+TGG 0.645131 7_4:+31520075 Msa1149570:three_prime_UTR
CGAAGCAGCATTATCAGGAA+CGG 0.647438 7_4:-31518968 None:intergenic
ATAAAGCAAGGAGTGATGAG+TGG 0.647740 7_4:+31517422 Msa1149570:five_prime_UTR
AGGACAAAATGTCATTGAGA+GGG 0.654084 7_4:+31519341 Msa1149570:CDS
TTGCAGTGCAGAAAATCATG+TGG 0.655690 7_4:+31519464 Msa1149570:CDS
TCAAGTAGGATCGTTTAAGG+AGG 0.657594 7_4:+31519047 Msa1149570:CDS
GATGTGTCCCTAGTTTGCAA+GGG 0.670828 7_4:+31519109 Msa1149570:CDS
ACATCTTTAATGTTACAACA+AGG 0.673582 7_4:+31521670 Msa1149570:three_prime_UTR
ACTGTCAGACGTAGACGATG+AGG 0.673863 7_4:-31520072 None:intergenic
AACCAGTGGTTAGGAAACAA+GGG 0.674807 7_4:-31521354 None:intergenic
TTAAGAATAACACAAAGGTG+TGG 0.678067 7_4:+31517602 Msa1149570:five_prime_UTR
TGCTGAAGGTGATCTCAACA+TGG 0.680051 7_4:+31521741 Msa1149570:three_prime_UTR
TAGCGGCTATATCATTGTAG+CGG 0.680102 7_4:+31519852 Msa1149570:three_prime_UTR
GAGGTTTAAGAATAACACAA+AGG 0.684353 7_4:+31517597 Msa1149570:five_prime_UTR
GTAAAACTTTGATCCAGACC+GGG 0.689896 7_4:+31521248 Msa1149570:three_prime_UTR
ATAACAGTGTCTTCAACATG+GGG 0.693185 7_4:+31518275 Msa1149570:exon
CTTGGAGACGAACTGCACGT+AGG 0.749412 7_4:+31521190 Msa1149570:three_prime_UTR
CACAGATGAGAACAACAGCG+AGG 0.769396 7_4:+31519983 Msa1149570:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAATTTTTTTTATACTTAT+TGG + chr7_4:31518407-31518426 Msa1149570:intron 10.0%
!!! CATAAAAAAAACACTTTTTT+TGG - chr7_4:31517767-31517786 None:intergenic 15.0%
!!! AAATTGATATACTGATTTAA+GGG - chr7_4:31517823-31517842 None:intergenic 15.0%
!!! GATTATTATTTCTTATTAAG+TGG + chr7_4:31518037-31518056 Msa1149570:intron 15.0%
!!! TTACTTTTGAAAATATTGAA+GGG + chr7_4:31518225-31518244 Msa1149570:intron 15.0%
!!! TTTTTTATACTTATTGGTTA+TGG + chr7_4:31518413-31518432 Msa1149570:intron 15.0%
!!! TTAATTCAATGTTACTTTTA+TGG + chr7_4:31519220-31519239 Msa1149570:intron 15.0%
!!! TAATTCAATGTTACTTTTAT+GGG + chr7_4:31519221-31519240 Msa1149570:intron 15.0%
!!! AAAAACTTTCTTTTCTTAAA+TGG - chr7_4:31520044-31520063 None:intergenic 15.0%
!! TTATATTAAATGATCAAATG+TGG - chr7_4:31520360-31520379 None:intergenic 15.0%
!! CATTTGATCATTTAATATAA+AGG + chr7_4:31520360-31520379 Msa1149570:intron 15.0%
!! TCATATAAGTACTTATATAT+AGG - chr7_4:31520975-31520994 None:intergenic 15.0%
!!! TTTGAAATATATTTTGACTT+TGG - chr7_4:31521038-31521057 None:intergenic 15.0%
!!! TTTTATTTAATCTTTTGCTT+TGG + chr7_4:31521993-31522012 Msa1149570:intron 15.0%
!!! TCTTTAATAGTTAAAGTATT+AGG + chr7_4:31522554-31522573 Msa1149570:intron 15.0%
!!! TTTTAGGGAAATATAAATTA+TGG - chr7_4:31522996-31523015 None:intergenic 15.0%
!! GTTAAAAAAGAAGAAGTTAA+GGG + chr7_4:31517260-31517279 Msa1149570:five_prime_UTR 20.0%
!!! TTCTTTTTGAACTTGAAAAA+GGG + chr7_4:31517738-31517757 Msa1149570:intron 20.0%
!!! CAAATTGATATACTGATTTA+AGG - chr7_4:31517824-31517843 None:intergenic 20.0%
!! TGAATAATCCTAGAAAAAAT+TGG - chr7_4:31517870-31517889 None:intergenic 20.0%
!! AAAATTAAAACAGGAAAAGT+AGG - chr7_4:31517922-31517941 None:intergenic 20.0%
!! ATTCAAAAATCAAAAATCAC+TGG - chr7_4:31518069-31518088 None:intergenic 20.0%
!!! TGATCTTTATTTAACAATTG+TGG + chr7_4:31518140-31518159 Msa1149570:intron 20.0%
!!! GTTACTTTTGAAAATATTGA+AGG + chr7_4:31518224-31518243 Msa1149570:intron 20.0%
!! ATTGAAAACTAACATGTAAA+TGG - chr7_4:31518323-31518342 None:intergenic 20.0%
!!! ATCTAATGACTTTTTCTTAT+AGG + chr7_4:31518510-31518529 Msa1149570:intron 20.0%
!!! TCTAATGACTTTTTCTTATA+GGG + chr7_4:31518511-31518530 Msa1149570:intron 20.0%
!! TATGTAATAGTTTGAGAAAA+TGG + chr7_4:31518720-31518739 Msa1149570:intron 20.0%
!! TAATTCCAATATACATGTTT+AGG + chr7_4:31518846-31518865 Msa1149570:intron 20.0%
!! AATTCCAATATACATGTTTA+GGG + chr7_4:31518847-31518866 Msa1149570:intron 20.0%
!!! TTTTTCTGGTATTAACATAA+AGG + chr7_4:31519008-31519027 Msa1149570:CDS 20.0%
!! ATCAATAATCATAAAGAATG+AGG - chr7_4:31519942-31519961 None:intergenic 20.0%
!! TCATTCTTTATGATTATTGA+TGG + chr7_4:31519941-31519960 Msa1149570:three_prime_UTR 20.0%
!! AAATAAAAAAGAGAGAAAGA+AGG - chr7_4:31520184-31520203 None:intergenic 20.0%
!!! ATTTAATATAAAGGCTTGTT+TGG + chr7_4:31520369-31520388 Msa1149570:intron 20.0%
!! TTAAGTTATTTATCCAAACT+GGG + chr7_4:31520492-31520511 Msa1149570:intron 20.0%
!! TAATGCTCTTAATAAATTCA+TGG + chr7_4:31520735-31520754 Msa1149570:intron 20.0%
!!! TATTTTGTTATTATTTGCAG+AGG + chr7_4:31521140-31521159 Msa1149570:intron 20.0%
!! AGAAAATCTATAGATACTTT+AGG + chr7_4:31521456-31521475 Msa1149570:intron 20.0%
!! TTTAGGTACAAACATATATT+CGG + chr7_4:31521473-31521492 Msa1149570:intron 20.0%
!! AATTTATATTTCCCTAAAAC+AGG + chr7_4:31522997-31523016 Msa1149570:three_prime_UTR 20.0%
!! ATGATTATAATTTGACCATA+TGG + chr7_4:31523042-31523061 Msa1149570:three_prime_UTR 20.0%
! AAAAACTAGAAACATTTGAC+CGG - chr7_4:31517467-31517486 None:intergenic 25.0%
! TAACTAAACCTTACTATACT+CGG + chr7_4:31517490-31517509 Msa1149570:five_prime_UTR 25.0%
! TAAAACATATATCCTAGGAA+GGG - chr7_4:31517533-31517552 None:intergenic 25.0%
! ATAAAACATATATCCTAGGA+AGG - chr7_4:31517534-31517553 None:intergenic 25.0%
!! TTCCTAGGATATATGTTTTA+TGG + chr7_4:31517533-31517552 Msa1149570:five_prime_UTR 25.0%
!! CTTCTTTTTGAACTTGAAAA+AGG + chr7_4:31517737-31517756 Msa1149570:intron 25.0%
! TAATCCTAGAAAAAATTGGA+AGG - chr7_4:31517866-31517885 None:intergenic 25.0%
! TGATTTAATATGACTGTGTA+TGG + chr7_4:31518110-31518129 Msa1149570:intron 25.0%
! TATCATAATACAAGTCAGTA+GGG - chr7_4:31518653-31518672 None:intergenic 25.0%
! ATTCCAATATACATGTTTAG+GGG + chr7_4:31518848-31518867 Msa1149570:intron 25.0%
!! GATACAAGCATTTGATATTT+TGG + chr7_4:31518906-31518925 Msa1149570:intron 25.0%
! ATTAAGTAATTTCCTAGTAC+CGG - chr7_4:31519547-31519566 None:intergenic 25.0%
! TCTGTGACAAAAACAATTAA+TGG - chr7_4:31519969-31519988 None:intergenic 25.0%
! AATTACTGCAAATGATAGTT+TGG - chr7_4:31520254-31520273 None:intergenic 25.0%
! CTTAAGTTATTTATCCAAAC+TGG + chr7_4:31520491-31520510 Msa1149570:intron 25.0%
!!! TCTAACATGCTTGTTATATA+AGG + chr7_4:31520521-31520540 Msa1149570:intron 25.0%
! GTATATCAATAAAAAGCTCT+GGG - chr7_4:31520606-31520625 None:intergenic 25.0%
! TACTTATATATAGGCTATCT+TGG - chr7_4:31520966-31520985 None:intergenic 25.0%
! TGACAAAAATCCATACATAA+TGG - chr7_4:31521403-31521422 None:intergenic 25.0%
!! ATTATGTATGGATTTTTGTC+AGG + chr7_4:31521402-31521421 Msa1149570:intron 25.0%
!! GTATCTATAGATTTTCTCTA+AGG - chr7_4:31521453-31521472 None:intergenic 25.0%
! ACAAGAAATGTGTAAAATGA+AGG - chr7_4:31521544-31521563 None:intergenic 25.0%
! AATGAGCATATTAGTTATTG+CGG - chr7_4:31521631-31521650 None:intergenic 25.0%
!! TATGCTCATTTTCAATAAAC+AGG + chr7_4:31521641-31521660 Msa1149570:intron 25.0%
! ACATCTTTAATGTTACAACA+AGG + chr7_4:31521670-31521689 Msa1149570:three_prime_UTR 25.0%
! AAGGAACATATAATGTATCT+CGG + chr7_4:31521689-31521708 Msa1149570:three_prime_UTR 25.0%
! AAAATTGAAAATTGTGCTGA+AGG + chr7_4:31521727-31521746 Msa1149570:three_prime_UTR 25.0%
! ATAACTACACTAAATCTTTC+TGG - chr7_4:31522918-31522937 None:intergenic 25.0%
! TCACTTCTTTGTTTAACATG+TGG - chr7_4:31517401-31517420 None:intergenic 30.0%
GACCATAAAACATATATCCT+AGG - chr7_4:31517538-31517557 None:intergenic 30.0%
! ATGTTTTATGGTCAAACGTT+TGG + chr7_4:31517545-31517564 Msa1149570:five_prime_UTR 30.0%
GTTTGGAAAAAACAGTTAGT+TGG + chr7_4:31517562-31517581 Msa1149570:five_prime_UTR 30.0%
GAGGTTTAAGAATAACACAA+AGG + chr7_4:31517597-31517616 Msa1149570:five_prime_UTR 30.0%
TTAAGAATAACACAAAGGTG+TGG + chr7_4:31517602-31517621 Msa1149570:five_prime_UTR 30.0%
! TTTTCAAACCTAGTGAATAG+TGG - chr7_4:31517680-31517699 None:intergenic 30.0%
!!! ATCTCCTTCCAATTTTTTCT+AGG + chr7_4:31517859-31517878 Msa1149570:intron 30.0%
AATTAATCAAGCACTAGGAA+AGG - chr7_4:31517897-31517916 None:intergenic 30.0%
AGGAAAATTAATCAAGCACT+AGG - chr7_4:31517902-31517921 None:intergenic 30.0%
TATTCAAGACATTGTTCACA+TGG - chr7_4:31518013-31518032 None:intergenic 30.0%
TGACAATGTAAGATGAGATA+AGG - chr7_4:31518386-31518405 None:intergenic 30.0%
TTGAATTTGATTATGCTGAC+AGG + chr7_4:31518444-31518463 Msa1149570:intron 30.0%
AAGATATGATTATGCAGAAG+AGG + chr7_4:31518544-31518563 Msa1149570:intron 30.0%
!! AGGTTGGATTACAGTTTTAA+TGG + chr7_4:31518564-31518583 Msa1149570:intron 30.0%
!! GAAAATAATTTGCTTACCCT+AGG - chr7_4:31518618-31518637 None:intergenic 30.0%
GTATCATAATACAAGTCAGT+AGG - chr7_4:31518654-31518673 None:intergenic 30.0%
GTAATAGTTTGAGAAAATGG+AGG + chr7_4:31518723-31518742 Msa1149570:intron 30.0%
AACAAACAAGAGAATCAAGT+AGG + chr7_4:31519033-31519052 Msa1149570:CDS 30.0%
AAGGGAAACATGAAAATCAA+AGG + chr7_4:31519127-31519146 Msa1149570:CDS 30.0%
ATCAAAGGTAAATGTTGAAG+AGG + chr7_4:31519142-31519161 Msa1149570:intron 30.0%
GTTCTATAAATCCATCAGAT+CGG - chr7_4:31519422-31519441 None:intergenic 30.0%
! TGCAATCTTTTGATACTCTT+TGG - chr7_4:31519449-31519468 None:intergenic 30.0%
AATCTTGATTCTTTACCGAA+TGG + chr7_4:31519519-31519538 Msa1149570:CDS 30.0%
! ATGATGACGAAAACTTTGTT+CGG + chr7_4:31519571-31519590 Msa1149570:CDS 30.0%
TTAACCTTTATTGTATCTGG+TGG - chr7_4:31519636-31519655 None:intergenic 30.0%
ACCAGATACAATAAAGGTTA+AGG + chr7_4:31519635-31519654 Msa1149570:CDS 30.0%
TCCTTAACCTTTATTGTATC+TGG - chr7_4:31519639-31519658 None:intergenic 30.0%
AGCTAAATACCATTCATGAA+AGG - chr7_4:31519669-31519688 None:intergenic 30.0%
!! TACAAAGTGTTGTCAAATAG+CGG + chr7_4:31519835-31519854 Msa1149570:three_prime_UTR 30.0%
! AGTTGATTCTTCTTGTACAA+GGG + chr7_4:31520115-31520134 Msa1149570:three_prime_UTR 30.0%
TACGGAAAAACAAGCAAAAA+AGG - chr7_4:31520218-31520237 None:intergenic 30.0%
!! TTTTGCTTGTTTTTCCGTAT+TGG + chr7_4:31520219-31520238 Msa1149570:intron 30.0%
GAGCTTATGAAAACAACTTA+TGG + chr7_4:31520446-31520465 Msa1149570:intron 30.0%
ATAACAAGCATGTTAGACTA+AGG - chr7_4:31520518-31520537 None:intergenic 30.0%
GGTATATCAATAAAAAGCTC+TGG - chr7_4:31520607-31520626 None:intergenic 30.0%
TGCTCTTAATAAATTCATGG+AGG + chr7_4:31520738-31520757 Msa1149570:intron 30.0%
TAGCTTACTATATGTCCATA+AGG + chr7_4:31520913-31520932 Msa1149570:intron 30.0%
AGAGTGCGAAAAATATACAA+TGG - chr7_4:31521098-31521117 None:intergenic 30.0%
GATGAAATTCGATTATGTCT+CGG - chr7_4:31521319-31521338 None:intergenic 30.0%
! AATGGTTACCTAGAAAGTTT+TGG - chr7_4:31521385-31521404 None:intergenic 30.0%
TTCTAGGTAACCATTATGTA+TGG + chr7_4:31521390-31521409 Msa1149570:intron 30.0%
AGGAACATATAATGTATCTC+GGG + chr7_4:31521690-31521709 Msa1149570:three_prime_UTR 30.0%
ATATATTACTTGTGTGTTGC+AGG + chr7_4:31522047-31522066 Msa1149570:intron 30.0%
CAAAAGAACCTTTATGAAAG+CGG - chr7_4:31522186-31522205 None:intergenic 30.0%
! GAAGAGTTGGCTTAAAAAAT+TGG + chr7_4:31522218-31522237 Msa1149570:intron 30.0%
CAATTTAGACTGTCTGATTA+AGG + chr7_4:31522381-31522400 Msa1149570:intron 30.0%
! CATGATTCCTCTTTCTATTT+TGG - chr7_4:31522443-31522462 None:intergenic 30.0%
!!! TAGGAAGCATTTTAAAGACT+AGG + chr7_4:31522573-31522592 Msa1149570:intron 30.0%
TTCTTTCTTCATACGTAAGA+AGG - chr7_4:31522849-31522868 None:intergenic 30.0%
TATTTCCCTAAAACAGGTAA+AGG + chr7_4:31523003-31523022 Msa1149570:three_prime_UTR 30.0%
GTATGGTAAATGTAACCATA+TGG - chr7_4:31523060-31523079 None:intergenic 30.0%
GTTACATTTACCATACCTTA+TGG + chr7_4:31523064-31523083 Msa1149570:three_prime_UTR 30.0%
CAATATTTGACCATAAGGTA+TGG - chr7_4:31523077-31523096 None:intergenic 30.0%
CATACCTTATGGTCAAATAT+TGG + chr7_4:31523075-31523094 Msa1149570:three_prime_UTR 30.0%
CTTACCAATATTTGACCATA+AGG - chr7_4:31523082-31523101 None:intergenic 30.0%
ATAAAGAATGACCTATGAAG+AGG + chr7_4:31523197-31523216 Msa1149570:three_prime_UTR 30.0%
ATTCAATTGTACCTCTTCAT+AGG - chr7_4:31523211-31523230 None:intergenic 30.0%
!! AAGGGACTAGTTAGCAAATT+AGG + chr7_4:31517278-31517297 Msa1149570:five_prime_UTR 35.0%
TAGCAAATTAGGAGAAGATG+TGG + chr7_4:31517289-31517308 Msa1149570:five_prime_UTR 35.0%
CAAAGAAGTGACATAAAGCA+AGG + chr7_4:31517410-31517429 Msa1149570:five_prime_UTR 35.0%
ATCATCACAAACTAAGGAAC+CGG + chr7_4:31517445-31517464 Msa1149570:five_prime_UTR 35.0%
TCTTTGTACCGAGTATAGTA+AGG - chr7_4:31517501-31517520 None:intergenic 35.0%
GGAAAAAACAGTTAGTTGGT+TGG + chr7_4:31517566-31517585 Msa1149570:five_prime_UTR 35.0%
!!! TAGTTGGTTGGTTTTGTAAG+AGG + chr7_4:31517578-31517597 Msa1149570:five_prime_UTR 35.0%
TACACATACCACTATTCACT+AGG + chr7_4:31517669-31517688 Msa1149570:five_prime_UTR 35.0%
!! GTTTGATCTGTGTGTTTTTG+TGG + chr7_4:31517960-31517979 Msa1149570:intron 35.0%
TATCTGCTTCAGATTCAAAC+AGG + chr7_4:31518252-31518271 Msa1149570:five_prime_UTR 35.0%
GATAACAGTGTCTTCAACAT+GGG + chr7_4:31518274-31518293 Msa1149570:exon 35.0%
ATAACAGTGTCTTCAACATG+GGG + chr7_4:31518275-31518294 Msa1149570:exon 35.0%
TATGATTATGCAGAAGAGGT+TGG + chr7_4:31518548-31518567 Msa1149570:intron 35.0%
CAATATACATGTTTAGGGGA+GGG + chr7_4:31518852-31518871 Msa1149570:intron 35.0%
AATATACATGTTTAGGGGAG+GGG + chr7_4:31518853-31518872 Msa1149570:intron 35.0%
TGCTTGTATCTGATTACTGT+CGG - chr7_4:31518896-31518915 None:intergenic 35.0%
TTAATACCAGAAAAAGCGAG+AGG - chr7_4:31519003-31519022 None:intergenic 35.0%
GAATCAAGTAGGATCGTTTA+AGG + chr7_4:31519044-31519063 Msa1149570:CDS 35.0%
TTTCATGACAGTCATCTTGA+AGG + chr7_4:31519315-31519334 Msa1149570:CDS 35.0%
TTCATGACAGTCATCTTGAA+GGG + chr7_4:31519316-31519335 Msa1149570:CDS 35.0%
AAGGACAAAATGTCATTGAG+AGG + chr7_4:31519340-31519359 Msa1149570:CDS 35.0%
AGGACAAAATGTCATTGAGA+GGG + chr7_4:31519341-31519360 Msa1149570:CDS 35.0%
! TCTTTTGATACTCTTTGGCT+TGG - chr7_4:31519444-31519463 None:intergenic 35.0%
AATCAAGATTCCTGCTGAAA+CGG - chr7_4:31519509-31519528 None:intergenic 35.0%
! ATTCTTTGAGTTCAGTTCAG+TGG - chr7_4:31519598-31519617 None:intergenic 35.0%
CAAAACTCTTCAATGATGCA+TGG + chr7_4:31519883-31519902 Msa1149570:three_prime_UTR 35.0%
! CAGTTGATTCTTCTTGTACA+AGG + chr7_4:31520114-31520133 Msa1149570:three_prime_UTR 35.0%
TCTTCTTGTACAAGGGTTAA+TGG + chr7_4:31520122-31520141 Msa1149570:three_prime_UTR 35.0%
AAATGTGGTCAATCATTTCG+CGG - chr7_4:31520345-31520364 None:intergenic 35.0%
! TGTTATATAAGGCTCTGACA+TGG + chr7_4:31520532-31520551 Msa1149570:intron 35.0%
!! AAAAAGCTCTGGGACTTTAA+AGG - chr7_4:31520596-31520615 None:intergenic 35.0%
ATACCTGAAACTGCAACTAT+TGG + chr7_4:31520622-31520641 Msa1149570:three_prime_UTR 35.0%
GTACAATACTGAAGCATATG+TGG + chr7_4:31520764-31520783 Msa1149570:intron 35.0%
AGACTGTTTGGAAAAGCTTA+TGG + chr7_4:31520887-31520906 Msa1149570:intron 35.0%
AATCAAGTGAAAACGCCTTA+TGG - chr7_4:31520931-31520950 None:intergenic 35.0%
! AGGCTATCTTGGAGATTTTA+TGG - chr7_4:31520955-31520974 None:intergenic 35.0%
TTATTTGCAGAGGACAGTAA+TGG + chr7_4:31521150-31521169 Msa1149570:intron 35.0%
TAATCTTCTTCCCTTGAAGA+AGG - chr7_4:31521219-31521238 None:intergenic 35.0%
AGTAAAACTTTGATCCAGAC+CGG + chr7_4:31521247-31521266 Msa1149570:three_prime_UTR 35.0%
TTTGTCATCTTGAGATATCC+CGG - chr7_4:31521269-31521288 None:intergenic 35.0%
ATGACAAACGTCATAGGTTA+GGG + chr7_4:31521281-31521300 Msa1149570:three_prime_UTR 35.0%
AGCTAATGCATCCATGTTAA+TGG - chr7_4:31521839-31521858 None:intergenic 35.0%
AAATCAGGGAATTCCTACTT+TGG + chr7_4:31521877-31521896 Msa1149570:three_prime_UTR 35.0%
!! TCTACTTCTAGAACCGAAAA+TGG - chr7_4:31521922-31521941 None:intergenic 35.0%
!! TCGAACTTATGTCGATTTGA+AGG + chr7_4:31522111-31522130 Msa1149570:three_prime_UTR 35.0%
TTAGACTGTCTGATTAAGGT+TGG + chr7_4:31522385-31522404 Msa1149570:intron 35.0%
ATAGGGTCCAAAATAGAAAG+AGG + chr7_4:31522433-31522452 Msa1149570:intron 35.0%
GATACTTTCTCTATGACTGT+GGG - chr7_4:31522532-31522551 None:intergenic 35.0%
AGATACTTTCTCTATGACTG+TGG - chr7_4:31522533-31522552 None:intergenic 35.0%
TTAAAGACTAGGATGATACG+CGG + chr7_4:31522584-31522603 Msa1149570:intron 35.0%
GAGAGATCATACTTATCAAC+TGG - chr7_4:31522634-31522653 None:intergenic 35.0%
! TGTGATTTTCGAAATTCTGC+AGG + chr7_4:31522673-31522692 Msa1149570:intron 35.0%
! CCAAACCTTTACCTGTTTTA+GGG - chr7_4:31523011-31523030 None:intergenic 35.0%
CCTAAAACAGGTAAAGGTTT+GGG + chr7_4:31523009-31523028 Msa1149570:three_prime_UTR 35.0%
TAAAAACCCCCCAAAATGAG+TGG + chr7_4:31517367-31517386 Msa1149570:five_prime_UTR 40.0%
ATAAAGCAAGGAGTGATGAG+TGG + chr7_4:31517422-31517441 Msa1149570:five_prime_UTR 40.0%
GAGTGGATCATCACAAACTA+AGG + chr7_4:31517439-31517458 Msa1149570:five_prime_UTR 40.0%
! AGAATAACACAAAGGTGTGG+TGG + chr7_4:31517605-31517624 Msa1149570:five_prime_UTR 40.0%
GGATAACAGTGTCTTCAACA+TGG + chr7_4:31518273-31518292 Msa1149570:exon 40.0%
TAGAGCTTCAAGATCTCCTA+GGG + chr7_4:31518599-31518618 Msa1149570:intron 40.0%
TACAAGTCAGTAGGGAATGT+AGG - chr7_4:31518645-31518664 None:intergenic 40.0%
ACGCCTTCAATCAGAAAAGT+CGG + chr7_4:31518784-31518803 Msa1149570:intron 40.0%
!!! GTACCGACTTTTCTGATTGA+AGG - chr7_4:31518790-31518809 None:intergenic 40.0%
CCTCCCCTAAACATGTATAT+TGG - chr7_4:31518854-31518873 None:intergenic 40.0%
CCAATATACATGTTTAGGGG+AGG + chr7_4:31518851-31518870 Msa1149570:intron 40.0%
GCTTGTATCTGATTACTGTC+GGG - chr7_4:31518895-31518914 None:intergenic 40.0%
!!! GATATTTTGGCTAGTGTAGC+TGG + chr7_4:31518919-31518938 Msa1149570:intron 40.0%
AACTCTGAGTCTTCTGCAAA+AGG - chr7_4:31518948-31518967 None:intergenic 40.0%
!!! AAAGATCCTCTCGCTTTTTC+TGG + chr7_4:31518994-31519013 Msa1149570:CDS 40.0%
TCAAGTAGGATCGTTTAAGG+AGG + chr7_4:31519047-31519066 Msa1149570:CDS 40.0%
AAGGAGGAGCAATTTGAGAA+TGG + chr7_4:31519063-31519082 Msa1149570:CDS 40.0%
CATGTTTCCCTTGCAAACTA+GGG - chr7_4:31519119-31519138 None:intergenic 40.0%
TCATGTTTCCCTTGCAAACT+AGG - chr7_4:31519120-31519139 None:intergenic 40.0%
GTTGAAGAGGTTAATGTCTC+TGG + chr7_4:31519155-31519174 Msa1149570:intron 40.0%
TTGCAGTGCAGAAAATCATG+TGG + chr7_4:31519464-31519483 Msa1149570:CDS 40.0%
TCATGTGGAGAAACCTTCAT+TGG + chr7_4:31519479-31519498 Msa1149570:CDS 40.0%
GATTCTTTACCGAATGGTTC+CGG + chr7_4:31519525-31519544 Msa1149570:CDS 40.0%
CCTTTATTGTATCTGGTGGT+GGG - chr7_4:31519632-31519651 None:intergenic 40.0%
ACCTTTATTGTATCTGGTGG+TGG - chr7_4:31519633-31519652 None:intergenic 40.0%
GATGCAAGTCCTTTCATGAA+TGG + chr7_4:31519657-31519676 Msa1149570:CDS 40.0%
!! CACTGGCTTGAATCACAATT+CGG - chr7_4:31519747-31519766 None:intergenic 40.0%
TTGCTGCTATATGACTACAC+TGG - chr7_4:31519764-31519783 None:intergenic 40.0%
TAGCGGCTATATCATTGTAG+CGG + chr7_4:31519852-31519871 Msa1149570:three_prime_UTR 40.0%
TTTGGATCGTTGAGCCAATA+CGG - chr7_4:31520236-31520255 None:intergenic 40.0%
TTTCCTACCATTACAACCCT+TGG - chr7_4:31520320-31520339 None:intergenic 40.0%
GAACCAATAGTTGCAGTTTC+AGG - chr7_4:31520628-31520647 None:intergenic 40.0%
AAAGATGCTAGCTAGGTTCA+AGG - chr7_4:31520813-31520832 None:intergenic 40.0%
TGAACCTAGCTAGCATCTTT+AGG + chr7_4:31520813-31520832 Msa1149570:intron 40.0%
GAACCTAGCTAGCATCTTTA+GGG + chr7_4:31520814-31520833 Msa1149570:intron 40.0%
TAAGTACCTGTGAGACTGTT+TGG + chr7_4:31520875-31520894 Msa1149570:intron 40.0%
GTCTCCAAGTATAGTTGTCA+CGG - chr7_4:31521179-31521198 None:intergenic 40.0%
GTAAAACTTTGATCCAGACC+GGG + chr7_4:31521248-31521267 Msa1149570:three_prime_UTR 40.0%
CTCAAGATGACAAACGTCAT+AGG + chr7_4:31521275-31521294 Msa1149570:three_prime_UTR 40.0%
GATGACAAACGTCATAGGTT+AGG + chr7_4:31521280-31521299 Msa1149570:three_prime_UTR 40.0%
TCATAGGTTAGGGTTCATGT+TGG + chr7_4:31521291-31521310 Msa1149570:three_prime_UTR 40.0%
AACCAGTGGTTAGGAAACAA+GGG - chr7_4:31521357-31521376 None:intergenic 40.0%
GTTCACGACCAAAACTTTCT+AGG + chr7_4:31521374-31521393 Msa1149570:three_prime_UTR 40.0%
!!! ATTTTCTCTAAGGCGTCGTT+TGG - chr7_4:31521443-31521462 None:intergenic 40.0%
ACACATTTCTTGTCGATGTG+AGG + chr7_4:31521551-31521570 Msa1149570:intron 40.0%
CACATTTCTTGTCGATGTGA+GGG + chr7_4:31521552-31521571 Msa1149570:intron 40.0%
TCCAACATTGTGTCAGTATC+AGG + chr7_4:31521596-31521615 Msa1149570:intron 40.0%
AATGCATCCATGTTAATGGC+AGG - chr7_4:31521835-31521854 None:intergenic 40.0%
TAACATGGATGCATTAGCTG+TGG + chr7_4:31521840-31521859 Msa1149570:three_prime_UTR 40.0%
!! GGTTCTAGAAGTAGAAGCTT+TGG + chr7_4:31521927-31521946 Msa1149570:three_prime_UTR 40.0%
! AGAAGTAGAAGCTTTGGTTC+AGG + chr7_4:31521933-31521952 Msa1149570:three_prime_UTR 40.0%
TCGAAAAACTAGGAACTGGA+AGG + chr7_4:31521959-31521978 Msa1149570:three_prime_UTR 40.0%
TATTACTTGTGTGTTGCAGG+TGG + chr7_4:31522050-31522069 Msa1149570:intron 40.0%
CATAAGTTCGATGCTTTGCA+TGG - chr7_4:31522102-31522121 None:intergenic 40.0%
AGAACCTTTATGAAAGCGGT+CGG - chr7_4:31522182-31522201 None:intergenic 40.0%
! GGTTCTTTTGTGCCAAATAG+TGG + chr7_4:31522196-31522215 Msa1149570:intron 40.0%
AAGCCAACTCTTCCACTATT+TGG - chr7_4:31522211-31522230 None:intergenic 40.0%
GGCTTAAAAAATTGGCCAGT+TGG + chr7_4:31522226-31522245 Msa1149570:intron 40.0%
! CTAGCAATCTTGAAAGCACA+AGG - chr7_4:31522275-31522294 None:intergenic 40.0%
ACTGTCTGATTAAGGTTGGA+TGG + chr7_4:31522389-31522408 Msa1149570:intron 40.0%
! ACATTGCAGCTCTGGTAAAT+AGG + chr7_4:31522415-31522434 Msa1149570:intron 40.0%
! CATTGCAGCTCTGGTAAATA+GGG + chr7_4:31522416-31522435 Msa1149570:intron 40.0%
AGTATGATCTCTCTGCATTG+TGG + chr7_4:31522641-31522660 Msa1149570:intron 40.0%
TCGAAATTCTGCAGGATAAG+TGG + chr7_4:31522681-31522700 Msa1149570:intron 40.0%
CAAGAATCTCTCCTCAACAA+AGG + chr7_4:31522723-31522742 Msa1149570:three_prime_UTR 40.0%
TCTTATCTGCTCATGCCTAT+TGG + chr7_4:31522783-31522802 Msa1149570:three_prime_UTR 40.0%
! GCATTGTTGTTGAGACCAAT+AGG - chr7_4:31522801-31522820 None:intergenic 40.0%
CCCTAAAACAGGTAAAGGTT+TGG + chr7_4:31523008-31523027 Msa1149570:three_prime_UTR 40.0%
! CCCAAACCTTTACCTGTTTT+AGG - chr7_4:31523012-31523031 None:intergenic 40.0%
! ACACTCTCCACTCATTTTGG+GGG - chr7_4:31517377-31517396 None:intergenic 45.0%
! CACACTCTCCACTCATTTTG+GGG - chr7_4:31517378-31517397 None:intergenic 45.0%
! GCACACTCTCCACTCATTTT+GGG - chr7_4:31517379-31517398 None:intergenic 45.0%
AGACATGTTAGACCCTTCCT+AGG + chr7_4:31517518-31517537 Msa1149570:five_prime_UTR 45.0%
! AGGTGTGGTGGTTTTTCACA+AGG + chr7_4:31517617-31517636 Msa1149570:five_prime_UTR 45.0%
! TATGCTGACAGGTTCTGATC+TGG + chr7_4:31518455-31518474 Msa1149570:intron 45.0%
! ATGCTGACAGGTTCTGATCT+GGG + chr7_4:31518456-31518475 Msa1149570:intron 45.0%
CTAGGAGATCTTGAAGCTCT+AGG - chr7_4:31518600-31518619 None:intergenic 45.0%
CTAGAGCTTCAAGATCTCCT+AGG + chr7_4:31518598-31518617 Msa1149570:intron 45.0%
ATGATACGAATCACCGAGAC+AGG + chr7_4:31518667-31518686 Msa1149570:intron 45.0%
! TTTCTGATTGAAGGCGTGTC+TGG - chr7_4:31518781-31518800 None:intergenic 45.0%
CGAAGCAGCATTATCAGGAA+CGG - chr7_4:31518971-31518990 None:intergenic 45.0%
! CGTTCCTGATAATGCTGCTT+CGG + chr7_4:31518969-31518988 Msa1149570:CDS 45.0%
ACTTGCAGTGAAGTTGTCTC+TGG + chr7_4:31519087-31519106 Msa1149570:CDS 45.0%
! GATGTGTCCCTAGTTTGCAA+GGG + chr7_4:31519109-31519128 Msa1149570:CDS 45.0%
AATGTCTCTGGATGTGTCTC+TGG + chr7_4:31519167-31519186 Msa1149570:intron 45.0%
CGATGAATCACATGTGACTC+TGG - chr7_4:31519295-31519314 None:intergenic 45.0%
CGCATCAAAAACCGATCTGA+TGG + chr7_4:31519408-31519427 Msa1149570:CDS 45.0%
TGTGGAGAAACCTTCATTGG+AGG + chr7_4:31519482-31519501 Msa1149570:CDS 45.0%
GTGGAGAAACCTTCATTGGA+GGG + chr7_4:31519483-31519502 Msa1149570:CDS 45.0%
! TTCCTAGTACCGGAACCATT+CGG - chr7_4:31519537-31519556 None:intergenic 45.0%
CCCACCACCAGATACAATAA+AGG + chr7_4:31519629-31519648 Msa1149570:CDS 45.0%
AGAAGTTCTTCCTGAGTCCA+AGG + chr7_4:31520300-31520319 Msa1149570:three_prime_UTR 45.0%
GAAGTTCTTCCTGAGTCCAA+GGG + chr7_4:31520301-31520320 Msa1149570:three_prime_UTR 45.0%
AGTCCAAGGGTTGTAATGGT+AGG + chr7_4:31520314-31520333 Msa1149570:intron 45.0%
TGTTAGACTAAGGCCCAGTT+TGG - chr7_4:31520508-31520527 None:intergenic 45.0%
!! TGCAACTATTGGTTCGCTGA+AGG + chr7_4:31520633-31520652 Msa1149570:three_prime_UTR 45.0%
!! TAGCATCTTTAGGGCCTGTT+TGG + chr7_4:31520823-31520842 Msa1149570:intron 45.0%
!! TCTTTAGGGCCTGTTTGGAT+CGG + chr7_4:31520828-31520847 Msa1149570:intron 45.0%
TCGAATAAGCCGATCCAAAC+AGG - chr7_4:31520840-31520859 None:intergenic 45.0%
TCACAGGTACTTACACTAGC+AGG - chr7_4:31520868-31520887 None:intergenic 45.0%
! GCTTTTCCAAACAGTCTCAC+AGG - chr7_4:31520884-31520903 None:intergenic 45.0%
CGCACTCTCACAATGTCTAT+TGG + chr7_4:31521110-31521129 Msa1149570:intron 45.0%
GAAGCCGTGACAACTATACT+TGG + chr7_4:31521172-31521191 Msa1149570:three_prime_UTR 45.0%
ACGTAGGCATCCTTCTTCAA+GGG + chr7_4:31521206-31521225 Msa1149570:three_prime_UTR 45.0%
GAACCAGTGGTTAGGAAACA+AGG - chr7_4:31521358-31521377 None:intergenic 45.0%
!! AAGTTTTGGTCGTGAACCAG+TGG - chr7_4:31521371-31521390 None:intergenic 45.0%
GCCTGATACTGACACAATGT+TGG - chr7_4:31521600-31521619 None:intergenic 45.0%
TGTATCTCGGGAACGTTCTA+CGG + chr7_4:31521702-31521721 Msa1149570:three_prime_UTR 45.0%
TGCTGAAGGTGATCTCAACA+TGG + chr7_4:31521741-31521760 Msa1149570:three_prime_UTR 45.0%
CACAGTTCCTGCCATTAACA+TGG + chr7_4:31521825-31521844 Msa1149570:three_prime_UTR 45.0%
CATTAGCTGTGGTTCCATAC+CGG + chr7_4:31521851-31521870 Msa1149570:three_prime_UTR 45.0%
TTCCATACCGGCGTAAATCA+GGG + chr7_4:31521863-31521882 Msa1149570:three_prime_UTR 45.0%
AGGAATTCCCTGATTTACGC+CGG - chr7_4:31521873-31521892 None:intergenic 45.0%
GTTCAGGCAGTCGAAAAACT+AGG + chr7_4:31521949-31521968 Msa1149570:three_prime_UTR 45.0%
GCAGTCGAAAAACTAGGAAC+TGG + chr7_4:31521955-31521974 Msa1149570:three_prime_UTR 45.0%
TATGAAAGCGGTCGGAAGAA+AGG - chr7_4:31522174-31522193 None:intergenic 45.0%
TCTTCCGACCGCTTTCATAA+AGG + chr7_4:31522175-31522194 Msa1149570:intron 45.0%
! GTGCCAAATAGTGGAAGAGT+TGG + chr7_4:31522205-31522224 Msa1149570:intron 45.0%
GCAGGATAAGTGGAAGACAT+TGG + chr7_4:31522691-31522710 Msa1149570:intron 45.0%
ATCTCTCCTCAACAAAGGAG+AGG + chr7_4:31522728-31522747 Msa1149570:three_prime_UTR 45.0%
!! ATTTAAAAAAAAATTAAAAC+AGG - chr7_4:31517931-31517950 None:intergenic 5.0%
! CACTCTCCACTCATTTTGGG+GGG - chr7_4:31517376-31517395 None:intergenic 50.0%
! GGCACACTCTCCACTCATTT+TGG - chr7_4:31517380-31517399 None:intergenic 50.0%
! TGCTGACAGGTTCTGATCTG+GGG + chr7_4:31518457-31518476 Msa1149570:intron 50.0%
! TTTAGGGGAGGGGTACAATC+AGG + chr7_4:31518863-31518882 Msa1149570:intron 50.0%
TTCGCCGAAGCAGCATTATC+AGG - chr7_4:31518976-31518995 None:intergenic 50.0%
! GGATGTGTCCCTAGTTTGCA+AGG + chr7_4:31519108-31519127 Msa1149570:CDS 50.0%
GACAGTCATCTTGAAGGGCA+AGG + chr7_4:31519321-31519340 Msa1149570:CDS 50.0%
TACCGAATGGTTCCGGTACT+AGG + chr7_4:31519532-31519551 Msa1149570:CDS 50.0%
!! ATTGTATCTGGTGGTGGGTC+AGG - chr7_4:31519627-31519646 None:intergenic 50.0%
CACAGATGAGAACAACAGCG+AGG + chr7_4:31519983-31520002 Msa1149570:three_prime_UTR 50.0%
ACTGTCAGACGTAGACGATG+AGG - chr7_4:31520075-31520094 None:intergenic 50.0%
CATCGTCTACGTCTGACAGT+TGG + chr7_4:31520075-31520094 Msa1149570:three_prime_UTR 50.0%
! GACAGTTGGTCTCACTGTCA+AGG + chr7_4:31520089-31520108 Msa1149570:three_prime_UTR 50.0%
AGGGTTAATGGCACGAACCA+TGG + chr7_4:31520134-31520153 Msa1149570:three_prime_UTR 50.0%
AATGGCACGAACCATGGTAC+AGG + chr7_4:31520140-31520159 Msa1149570:three_prime_UTR 50.0%
CCATTACAACCCTTGGACTC+AGG - chr7_4:31520313-31520332 None:intergenic 50.0%
CCTGAGTCCAAGGGTTGTAA+TGG + chr7_4:31520310-31520329 Msa1149570:three_prime_UTR 50.0%
AGGCCCTAAAGATGCTAGCT+AGG - chr7_4:31520820-31520839 None:intergenic 50.0%
CACGTAGGCATCCTTCTTCA+AGG + chr7_4:31521205-31521224 Msa1149570:three_prime_UTR 50.0%
CATCTTGAGATATCCCGGTC+TGG - chr7_4:31521264-31521283 None:intergenic 50.0%
! GACCCTTGTTTCCTAACCAC+TGG + chr7_4:31521352-31521371 Msa1149570:three_prime_UTR 50.0%
TTGGTCGTGAACCAGTGGTT+AGG - chr7_4:31521366-31521385 None:intergenic 50.0%
CTCAACATGGTCTCCTCTCT+AGG + chr7_4:31521754-31521773 Msa1149570:three_prime_UTR 50.0%
AGCTGAAGCTTCTCCTAGAG+AGG - chr7_4:31521770-31521789 None:intergenic 50.0%
GTTCCATACCGGCGTAAATC+AGG + chr7_4:31521862-31521881 Msa1149570:three_prime_UTR 50.0%
TTCCCTGATTTACGCCGGTA+TGG - chr7_4:31521868-31521887 None:intergenic 50.0%
CCGAAAATGGCCTCCTGATT+CGG - chr7_4:31521909-31521928 None:intergenic 50.0%
!! CCGAATCAGGAGGCCATTTT+CGG + chr7_4:31521906-31521925 Msa1149570:three_prime_UTR 50.0%
GGTTCTCCTCTCCTTTGTTG+AGG - chr7_4:31522737-31522756 None:intergenic 50.0%
TCGAGAAGCTCTTGAGGAAC+AGG - chr7_4:31522758-31522777 None:intergenic 50.0%
ACTCTGTCGAGAAGCTCTTG+AGG - chr7_4:31522764-31522783 None:intergenic 50.0%
! GCTGACAGGTTCTGATCTGG+GGG + chr7_4:31518458-31518477 Msa1149570:intron 55.0%
! CTGACAGGTTCTGATCTGGG+GGG + chr7_4:31518459-31518478 Msa1149570:intron 55.0%
! TGACAGGTTCTGATCTGGGG+GGG + chr7_4:31518460-31518479 Msa1149570:intron 55.0%
CTGAAACGGCCCTCCAATGA+AGG - chr7_4:31519495-31519514 None:intergenic 55.0%
GCATTGTTCCGCCTGTACCA+TGG - chr7_4:31520154-31520173 None:intergenic 55.0%
GGTACAGGCGGAACAATGCA+TGG + chr7_4:31520155-31520174 Msa1149570:three_prime_UTR 55.0%
CTTGGAGACGAACTGCACGT+AGG + chr7_4:31521190-31521209 Msa1149570:three_prime_UTR 55.0%
!! CATGTCAAAGTGCCGAGCTC+TGG + chr7_4:31521801-31521820 Msa1149570:three_prime_UTR 55.0%
CAGGAACTGTGACCAGAGCT+CGG - chr7_4:31521816-31521835 None:intergenic 55.0%
GATTCGGCGCTGTCCAAAGT+AGG - chr7_4:31521893-31521912 None:intergenic 55.0%
! ACTTTGGACAGCGCCGAATC+AGG + chr7_4:31521893-31521912 Msa1149570:three_prime_UTR 55.0%
GATGGCTCACATTGCAGCTC+TGG + chr7_4:31522407-31522426 Msa1149570:intron 55.0%
GCACTCACGCAACTGCTGAT+TGG - chr7_4:31522491-31522510 None:intergenic 55.0%
TGCGTCAGTTGCGCCTGTCT+CGG - chr7_4:31518683-31518702 None:intergenic 60.0%
CATTGGAGGGCCGTTTCAGC+AGG + chr7_4:31519496-31519515 Msa1149570:CDS 60.0%
GGCACGAACCATGGTACAGG+CGG + chr7_4:31520143-31520162 Msa1149570:three_prime_UTR 60.0%
! TTGGACAGCGCCGAATCAGG+AGG + chr7_4:31521896-31521915 Msa1149570:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 31517260 31523235 31517260 ID=Msa1149570;Name=Msa1149570
chr7_4 mRNA 31517260 31523235 31517260 ID=Msa1149570-mRNA-1;Parent=Msa1149570;Name=Msa1149570-mRNA-1;_AED=0.16;_eAED=0.16;_QI=477|0.88|0.9|1|0.77|0.7|10|1792|203
chr7_4 exon 31517260 31517690 31517260 ID=Msa1149570-mRNA-1:exon:7594;Parent=Msa1149570-mRNA-1
chr7_4 exon 31518246 31518296 31518246 ID=Msa1149570-mRNA-1:exon:7595;Parent=Msa1149570-mRNA-1
chr7_4 exon 31518933 31519148 31518933 ID=Msa1149570-mRNA-1:exon:7596;Parent=Msa1149570-mRNA-1
chr7_4 exon 31519296 31520176 31519296 ID=Msa1149570-mRNA-1:exon:7597;Parent=Msa1149570-mRNA-1
chr7_4 exon 31520269 31520331 31520269 ID=Msa1149570-mRNA-1:exon:7598;Parent=Msa1149570-mRNA-1
chr7_4 exon 31520575 31520654 31520575 ID=Msa1149570-mRNA-1:exon:7599;Parent=Msa1149570-mRNA-1
chr7_4 exon 31521160 31521395 31521160 ID=Msa1149570-mRNA-1:exon:7600;Parent=Msa1149570-mRNA-1
chr7_4 exon 31521663 31521980 31521663 ID=Msa1149570-mRNA-1:exon:7601;Parent=Msa1149570-mRNA-1
chr7_4 exon 31522069 31522132 31522069 ID=Msa1149570-mRNA-1:exon:7602;Parent=Msa1149570-mRNA-1
chr7_4 exon 31522695 31523235 31522695 ID=Msa1149570-mRNA-1:exon:7603;Parent=Msa1149570-mRNA-1
chr7_4 five_prime_UTR 31517260 31517690 31517260 ID=Msa1149570-mRNA-1:five_prime_utr;Parent=Msa1149570-mRNA-1
chr7_4 five_prime_UTR 31518246 31518291 31518246 ID=Msa1149570-mRNA-1:five_prime_utr;Parent=Msa1149570-mRNA-1
chr7_4 CDS 31518292 31518296 31518292 ID=Msa1149570-mRNA-1:cds;Parent=Msa1149570-mRNA-1
chr7_4 CDS 31518933 31519148 31518933 ID=Msa1149570-mRNA-1:cds;Parent=Msa1149570-mRNA-1
chr7_4 CDS 31519296 31519686 31519296 ID=Msa1149570-mRNA-1:cds;Parent=Msa1149570-mRNA-1
chr7_4 three_prime_UTR 31519687 31520176 31519687 ID=Msa1149570-mRNA-1:three_prime_utr;Parent=Msa1149570-mRNA-1
chr7_4 three_prime_UTR 31520269 31520331 31520269 ID=Msa1149570-mRNA-1:three_prime_utr;Parent=Msa1149570-mRNA-1
chr7_4 three_prime_UTR 31520575 31520654 31520575 ID=Msa1149570-mRNA-1:three_prime_utr;Parent=Msa1149570-mRNA-1
chr7_4 three_prime_UTR 31521160 31521395 31521160 ID=Msa1149570-mRNA-1:three_prime_utr;Parent=Msa1149570-mRNA-1
chr7_4 three_prime_UTR 31521663 31521980 31521663 ID=Msa1149570-mRNA-1:three_prime_utr;Parent=Msa1149570-mRNA-1
chr7_4 three_prime_UTR 31522069 31522132 31522069 ID=Msa1149570-mRNA-1:three_prime_utr;Parent=Msa1149570-mRNA-1
chr7_4 three_prime_UTR 31522695 31523235 31522695 ID=Msa1149570-mRNA-1:three_prime_utr;Parent=Msa1149570-mRNA-1
Gene Sequence

>Msa1149570

ATGGGTGTAGCTGGCAACCTTTTGCAGAAGACTCAGAGTTCCGTTCCTGATAATGCTGCTTCGGCGAAAGATCCTCTCGCTTTTTCTGGTATTAACATAAAGGATAACAAACAAGAGAATCAAGTAGGATCGTTTAAGGAGGAGCAATTTGAGAATGGAACTTGCAGTGAAGTTGTCTCTGGATGTGTCCCTAGTTTGCAAGGGAAACATGAAAATCAAAGAGTCACATGTGATTCATCGTTTCATGACAGTCATCTTGAAGGGCAAGGACAAAATGTCATTGAGAGGGAAGATGAACGTGTGAAATTGAGAAGTACAAATGAGAAGACTATTCGCATCAAAAACCGATCTGATGGATTTATAGAACCAAGCCAAAGAGTATCAAAAGATTGCAGTGCAGAAAATCATGTGGAGAAACCTTCATTGGAGGGCCGTTTCAGCAGGAATCTTGATTCTTTACCGAATGGTTCCGGTACTAGGAAATTACTTAATAGAGATGATGACGAAAACTTTGTTCGGTCCACTGAACTGAACTCAAAGAATAAGATACCTGACCCACCACCAGATACAATAAAGGTTAAGGATGCAAGTCCTTTCATGAATGGTATTTAG

Protein sequence

>Msa1149570

MGVAGNLLQKTQSSVPDNAASAKDPLAFSGINIKDNKQENQVGSFKEEQFENGTCSEVVSGCVPSLQGKHENQRVTCDSSFHDSHLEGQGQNVIEREDERVKLRSTNEKTIRIKNRSDGFIEPSQRVSKDCSAENHVEKPSLEGRFSRNLDSLPNGSGTRKLLNRDDDENFVRSTELNSKNKIPDPPPDTIKVKDASPFMNGI*