AlfalfaGEDB | Msa0778060

M. sativa cultivar zhongmu-4 / Msa0778060

KEGG: K02291
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF00494.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0778060	XP_003616147.1	98.618	434	6	0	1	434	1	434	0.0	884

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0778060	sp\|P49293\|PSY_CUCME	73.986	419	98	6	13	428	12	422	0.0	630

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0778060	G7KFR8	98.618	434	6	0	1	434	1	434	0.0	884

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0778060	0.842836	2.026970e-58	-8.615850e-47
Msa0000310	Msa0778060	0.802623	5.139166e-49	-8.615850e-47
Msa0008330	Msa0778060	0.834971	2.201355e-56	-8.615850e-47
Msa0012740	Msa0778060	0.803874	2.831008e-49	-8.615850e-47
Msa0015370	Msa0778060	0.840029	1.111747e-57	-8.615850e-47
Msa0016830	Msa0778060	0.820124	8.093551e-53	-8.615850e-47
Msa0017120	Msa0778060	0.824765	6.758768e-54	-8.615850e-47
Msa0018010	Msa0778060	0.810747	9.884043e-51	-8.615850e-47
Msa0018870	Msa0778060	0.806797	6.910236e-50	-8.615850e-47
Msa0023150	Msa0778060	0.839054	1.993018e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0778060	MtrunA17_Chr5g0433601	98.618	434	6	0	1	434	1	434	0.0	884
Msa0778060	MtrunA17_Chr3g0095661	74.085	355	83	2	77	427	37	386	0.0	542
Msa0778060	MtrunA17_Chr5g0442671	73.714	350	81	4	87	431	42	385	0.0	530
Msa0778060	MtrunA17_Chr3g0121311	67.905	296	94	1	138	433	86	380	3.73e-155	444

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0778060	AT5G17230.2	69.142	431	113	6	2	429	4	417	595
Msa0778060	AT5G17230.1	69.142	431	113	6	2	429	4	417	595
Msa0778060	AT5G17230.4	69.142	431	113	6	2	429	4	417	595
Msa0778060	AT5G17230.3	66.816	446	113	7	2	429	4	432	585

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Find 112 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGGAAGCTGAGCTCTAC+CGG	0.500218	5_2:-57833745	Msa0778060:CDS
AAGATGAATTGGCTCTGGCA+GGG	0.589323	5_2:-57831956	Msa0778060:CDS
AATGGTATACTCGATTCTTT+CGG	0.323019	5_2:-57834033	Msa0778060:CDS
ACAAGCAAACTCCAGAAGAG+TGG	0.625192	5_2:-57835018	Msa0778060:five_prime_UTR
ACAGCCACTTCTCCTGCAGT+CGG	0.565483	5_2:+57833820	None:intergenic
ACATATTACAGCAACTGCAA+TGG	0.587371	5_2:-57832938	Msa0778060:CDS
ACATGAGATAACTTTGTTGA+TGG	0.406844	5_2:+57830949	None:intergenic
ACCAACATACTCAGAGATGT+TGG	0.536889	5_2:-57832221	Msa0778060:CDS
ACCACAAGATGAATTGGCTC+TGG	0.516944	5_2:-57831961	Msa0778060:CDS
ACTTGCATATGCTAGATCTA+TGG	0.394076	5_2:-57830977	Msa0778060:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATGAAAACATCAACATCA+TGG	+	chr5_2:57831102-57831121	None:intergenic	30.0%
TAATGGCAAATTCATCTAAG+TGG	-	chr5_2:57831133-57831152	Msa0778060:intron	30.0%
AATGGCAAATTCATCTAAGT+GGG	-	chr5_2:57831134-57831153	Msa0778060:intron	30.0%
CACAGAAAAACAACTTTGTT+GGG	+	chr5_2:57831185-57831204	None:intergenic	30.0%
AGTAGTAGTAACATGAAACA+AGG	+	chr5_2:57831219-57831238	None:intergenic	30.0%
TCATCATACAACAAGTATCA+TGG	+	chr5_2:57831614-57831633	None:intergenic	30.0%
TCATGTCTGTGACATTATTA+AGG	-	chr5_2:57831922-57831941	Msa0778060:CDS	30.0%
CATGTCTGTGACATTATTAA+GGG	-	chr5_2:57831923-57831942	Msa0778060:CDS	30.0%
AATGGTATACTCGATTCTTT+CGG	-	chr5_2:57831981-57832000	Msa0778060:CDS	30.0%
CCACAAAATCATTATATGTG+GGG	+	chr5_2:57833338-57833357	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	57830788	57835248	57830788	ID=Msa0778060;Name=Msa0778060
chr5_2	mRNA	57830788	57835248	57830788	ID=Msa0778060-mRNA-1;Parent=Msa0778060;Name=Msa0778060-mRNA-1;_AED=0.21;_eAED=0.21;_QI=467\|1\|1\|1\|0.83\|0.85\|7\|157\|434
chr5_2	exon	57830788	57831115	57830788	ID=Msa0778060-mRNA-1:exon:17098;Parent=Msa0778060-mRNA-1
chr5_2	exon	57831815	57832007	57831815	ID=Msa0778060-mRNA-1:exon:17097;Parent=Msa0778060-mRNA-1
chr5_2	exon	57832215	57832450	57832215	ID=Msa0778060-mRNA-1:exon:17096;Parent=Msa0778060-mRNA-1
chr5_2	exon	57832834	57833006	57832834	ID=Msa0778060-mRNA-1:exon:17095;Parent=Msa0778060-mRNA-1
chr5_2	exon	57833484	57833534	57833484	ID=Msa0778060-mRNA-1:exon:17094;Parent=Msa0778060-mRNA-1
chr5_2	exon	57833632	57834319	57833632	ID=Msa0778060-mRNA-1:exon:17093;Parent=Msa0778060-mRNA-1
chr5_2	exon	57834989	57835248	57834989	ID=Msa0778060-mRNA-1:exon:17092;Parent=Msa0778060-mRNA-1
chr5_2	five_prime_UTR	57834989	57835248	57834989	ID=Msa0778060-mRNA-1:five_prime_utr;Parent=Msa0778060-mRNA-1
chr5_2	five_prime_UTR	57834113	57834319	57834113	ID=Msa0778060-mRNA-1:five_prime_utr;Parent=Msa0778060-mRNA-1
chr5_2	CDS	57833632	57834112	57833632	ID=Msa0778060-mRNA-1:cds;Parent=Msa0778060-mRNA-1
chr5_2	CDS	57833484	57833534	57833484	ID=Msa0778060-mRNA-1:cds;Parent=Msa0778060-mRNA-1
chr5_2	CDS	57832834	57833006	57832834	ID=Msa0778060-mRNA-1:cds;Parent=Msa0778060-mRNA-1
chr5_2	CDS	57832215	57832450	57832215	ID=Msa0778060-mRNA-1:cds;Parent=Msa0778060-mRNA-1
chr5_2	CDS	57831815	57832007	57831815	ID=Msa0778060-mRNA-1:cds;Parent=Msa0778060-mRNA-1
chr5_2	CDS	57830945	57831115	57830945	ID=Msa0778060-mRNA-1:cds;Parent=Msa0778060-mRNA-1
chr5_2	three_prime_UTR	57830788	57830944	57830788	ID=Msa0778060-mRNA-1:three_prime_utr;Parent=Msa0778060-mRNA-1

Gene Sequence

>Msa0778060

ATGTCTGTGACATTATTAAGGGTTGCTTCCACTCCTAGCTTAGAGGTCTCCTGTTCCAATGGTATACTCGATTCTTTCGGGGTTGTGAAGCTTGTAGATTCTTCGAAGTTCTTGTCTAGAGACTCTGTGTCAATAAGAGCAAAAAAGAATGATAAGAAAAAGACACGGAGATTTTGCTCATTGAGTACAGATATTAAGTATGCGTGTGTTGGTCAGCCTGGCTTAGAGAGTGCTAGTAACTTCCCTTTGTTATCGAATGTGCTCGCGAACCCGACTGCAGGAGAAGTGGCTGTTTCGTCTGAGCAGAAGGTTTATGATGTGGTTCTGAAGCAGGCGTCTTTGGTTAAGAGGAAGCTGAGCTCTACCGGTGAACTTGAAGTGAAACCGGAAATTGTTTTGCCTGGGAATTTGAGTTTGTTGAGTGAAGCATATGATAGATGTGGAGAAATTTGTGCAGAATATGCTAAAACATTTTACTTGGGAACTCTTCTAATGACTCCCGAAAGGCGAAGAGCTATTTGGGCGATATATGTGTGGTGTAGGAGGACGGATGAACTTGTTGATGGCCCTAATGCTTCACATATTACAGCAACTGCAATGGATAGGTGGGAATCAAGATTGGACGAACTTTTCCAAGGGCGTCCATTTGATATGCTTGATGCTGCTTTATCAGATACCGTCAACAGATTTCCTGTTGATATCCAGCCATTTAAAGATATGATAGAAGGAATGAGAATGGATCTTAAGAAGTCGAGATACAAAAGCTTTGATGAACTATATCTCTACTGTTACTATGTTGCTGGAACTGTTGGTTTAATGAGTGTTCCCGTCATGGGCATTTCAACGCATTCGCAAGCCACAACAGAGAGTGTGTACAATGCTGCCTTGGCCTTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGATGCCAGGCGAGGAAGAGTGTATCTACCACAAGATGAATTGGCTCTGGCAGGGCTTTCAGATGACGACATATTTGCCGGTAAGGTGACAGACAAGTGGAGGAACTTCATGAAGAGCCAAATTAAAAGGGCGAGAACGTTTTTTGATGAGGCAGAAAAGGGAGTGACGGAGCTCAATGAACAGAGCAGATGGCCGGTGTGGGCGTCTTTGCTATTATATCGACAGATATTGGACGAAATAGAAGCTAATGATTACAACAATTTCACTAAGAGGGCTTATGTGAGCAAAACCAAGAAGTTACTTTCTTTACCACTTGCATATGCTAGATCTATGGTTCCTCCATCAACAAAGTTATCTCATGTATGA

Protein sequence

>Msa0778060

MSVTLLRVASTPSLEVSCSNGILDSFGVVKLVDSSKFLSRDSVSIRAKKNDKKKTRRFCSLSTDIKYACVGQPGLESASNFPLLSNVLANPTAGEVAVSSEQKVYDVVLKQASLVKRKLSSTGELEVKPEIVLPGNLSLLSEAYDRCGEICAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITATAMDRWESRLDELFQGRPFDMLDAALSDTVNRFPVDIQPFKDMIEGMRMDLKKSRYKSFDELYLYCYYVAGTVGLMSVPVMGISTHSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELALAGLSDDDIFAGKVTDKWRNFMKSQIKRARTFFDEAEKGVTELNEQSRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKTKKLLSLPLAYARSMVPPSTKLSHV*