AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0367760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367760 MtrunA17_Chr3g0109721 99.500 200 1 0 1 200 1 200 1.67e-149 412
Msa0367760 MtrunA17_Chr5g0433561 93.000 200 14 0 1 200 1 200 6.37e-142 393
Msa0367760 MtrunA17_Chr8g0390561 68.912 193 59 1 8 200 7 198 2.60e-98 283
Msa0367760 MtrunA17_Chr1g0199331 65.269 167 57 1 8 173 29 195 2.70e-78 232
Msa0367760 MtrunA17_Chr4g0055651 43.590 195 101 4 12 200 10 201 1.63e-50 162
Msa0367760 MtrunA17_Chr4g0032201 42.246 187 100 2 12 193 14 197 3.42e-48 156
Msa0367760 MtrunA17_Chr4g0040781 39.320 206 104 3 12 200 15 216 5.02e-48 156
Msa0367760 MtrunA17_Chr8g0381841 46.795 156 83 0 12 167 19 174 6.82e-48 156
Msa0367760 MtrunA17_Chr6g0458081 43.125 160 91 0 12 171 8 167 7.09e-48 155
Msa0367760 MtrunA17_Chr6g0482721 47.500 160 84 0 12 171 14 173 9.76e-48 155
Msa0367760 MtrunA17_Chr3g0123821 43.931 173 91 1 1 167 1 173 1.31e-47 155
Msa0367760 MtrunA17_Chr8g0349681 39.196 199 111 1 12 200 386 584 1.33e-47 164
Msa0367760 MtrunA17_Chr8g0349681 42.593 162 93 0 12 173 177 338 1.51e-43 153
Msa0367760 MtrunA17_Chr8g0349681 43.137 153 87 0 12 164 15 167 1.20e-41 147
Msa0367760 MtrunA17_Chr2g0315551 39.320 206 104 3 12 200 15 216 2.75e-47 154
Msa0367760 MtrunA17_Chr8g0349711 42.593 162 93 0 12 173 8 169 3.68e-47 154
Msa0367760 MtrunA17_Chr3g0112681 40.594 202 107 3 12 200 14 215 3.79e-47 154
Msa0367760 MtrunA17_Chr2g0319951 45.062 162 89 0 12 173 15 176 4.52e-47 154
Msa0367760 MtrunA17_Chr2g0283131 38.835 206 105 3 12 200 15 216 5.22e-47 154
Msa0367760 MtrunA17_Chr4g0046261 39.320 206 104 3 12 200 15 216 5.51e-47 153
Msa0367760 MtrunA17_Chr2g0276941 47.712 153 80 0 12 164 17 169 5.63e-47 154
Msa0367760 MtrunA17_Chr3g0123971 42.857 161 92 0 12 172 11 171 1.09e-46 152
Msa0367760 MtrunA17_Chr8g0382221 42.857 161 92 0 12 172 11 171 1.32e-46 152
Msa0367760 MtrunA17_Chr7g0250531 39.583 192 113 1 12 200 10 201 5.19e-46 150
Msa0367760 MtrunA17_Chr1g0189361 38.942 208 108 2 12 200 16 223 1.09e-45 150
Msa0367760 MtrunA17_Chr7g0275991 42.331 163 94 0 12 174 22 184 1.45e-45 150
Msa0367760 MtrunA17_Chr2g0290891 42.675 157 90 0 12 168 8 164 1.57e-45 149
Msa0367760 MtrunA17_Chr5g0400131 39.773 176 106 0 12 187 11 186 3.12e-45 149
Msa0367760 MtrunA17_Chr8g0335471 40.513 195 108 3 12 200 10 202 3.85e-45 148
Msa0367760 MtrunA17_Chr1g0182301 38.191 199 111 4 12 199 17 214 8.35e-45 148
Msa0367760 MtrunA17_Chr7g0231131 37.931 203 111 2 12 199 17 219 1.81e-44 147
Msa0367760 MtrunA17_Chr8g0351861 45.752 153 83 0 12 164 18 170 1.96e-44 147
Msa0367760 MtrunA17_Chr1g0182321 38.191 199 111 4 12 199 17 214 1.96e-44 147
Msa0367760 MtrunA17_Chr8g0346421 41.341 179 100 1 12 185 28 206 2.32e-44 147
Msa0367760 MtrunA17_Chr4g0055081 40.994 161 95 0 12 172 11 171 2.65e-44 146
Msa0367760 MtrunA17_Chr7g0234201 39.512 205 104 4 12 200 15 215 3.78e-44 146
Msa0367760 MtrunA17_Chr1g0174281 43.210 162 92 0 12 173 17 178 1.19e-43 145
Msa0367760 MtrunA17_Chr2g0325091 42.500 160 92 0 12 171 13 172 1.81e-43 144
Msa0367760 MtrunA17_Chr1g0212521 38.384 198 112 4 12 199 17 214 4.60e-43 143
Msa0367760 MtrunA17_Chr4g0030911 37.563 197 114 3 12 199 17 213 1.21e-42 142
Msa0367760 MtrunA17_Chr7g0214241 41.250 160 94 0 12 171 17 176 2.28e-42 142
Msa0367760 MtrunA17_Chr2g0276931 40.351 171 101 1 12 182 11 180 1.12e-41 139
Msa0367760 MtrunA17_Chr7g0263071 40.491 163 96 1 12 173 17 179 3.82e-41 138
Msa0367760 MtrunA17_Chr8g0392931 46.154 156 84 0 12 167 16 171 1.43e-38 132
Msa0367760 MtrunA17_Chr2g0327911 33.673 196 122 4 12 199 17 212 1.69e-38 132
Msa0367760 MtrunA17_Chr8g0383261 36.082 194 117 4 12 198 14 207 1.62e-36 126
Msa0367760 MtrunA17_Chr8g0384311 36.410 195 116 5 12 199 15 208 2.45e-36 126
Msa0367760 MtrunA17_Chr7g0265001 35.961 203 120 4 7 200 13 214 1.77e-35 124
Msa0367760 MtrunA17_Chr1g0197331 34.450 209 126 6 2 200 5 212 2.91e-34 120
Msa0367760 MtrunA17_Chr1g0159481 35.533 197 118 6 12 200 19 214 4.48e-34 120
Msa0367760 MtrunA17_Chr1g0180291 35.821 201 118 5 8 199 12 210 5.01e-34 120
Msa0367760 MtrunA17_Chr3g0130271 35.714 196 117 6 12 199 14 208 1.72e-33 119
Msa0367760 MtrunA17_Chr6g0466301 38.788 165 94 3 12 169 10 174 2.65e-33 118
Msa0367760 MtrunA17_Chr6g0465491 38.788 165 94 3 12 169 10 174 2.65e-33 118
Msa0367760 MtrunA17_Chr4g0034871 38.182 165 95 3 12 169 10 174 8.18e-33 117
Msa0367760 MtrunA17_Chr1g0201121 38.788 165 94 3 12 169 10 174 8.54e-32 114
Msa0367760 MtrunA17_Chr2g0331691 34.054 185 115 3 1 178 1 185 6.46e-31 112
Msa0367760 MtrunA17_Chr4g0004661 35.057 174 106 3 12 178 66 239 1.21e-29 110
Msa0367760 MtrunA17_Chr3g0138101 32.948 173 110 4 12 181 15 184 1.42e-24 96.3
Msa0367760 MtrunA17_Chr3g0138121 32.948 173 110 4 12 181 15 184 1.46e-24 95.9
Msa0367760 MtrunA17_Chr3g0138111 32.948 173 110 4 12 181 15 184 1.53e-24 95.9
Msa0367760 MtrunA17_Chr2g0331841 69.492 59 18 0 78 136 1 59 1.32e-23 90.1
Msa0367760 MtrunA17_Chr8g0371501 33.333 165 96 4 12 164 8 170 1.15e-19 82.8
Msa0367760 MtrunA17_Chr6g0465471 31.250 160 103 3 27 179 7 166 1.85e-19 82.4
Msa0367760 MtrunA17_Chr6g0466161 32.000 150 95 3 27 169 7 156 2.31e-19 82.0
Msa0367760 MtrunA17_Chr5g0405791 32.727 165 97 4 12 164 8 170 5.50e-19 80.9
Msa0367760 MtrunA17_Chr3g0117931 31.737 167 96 6 12 164 10 172 6.33e-19 80.9
Msa0367760 MtrunA17_Chr4g0046211 33.607 122 78 3 12 132 8 127 1.40e-17 75.9
Msa0367760 MtrunA17_Chr6g0466431 37.113 97 52 1 12 108 10 97 2.17e-17 73.9
Msa0367760 MtrunA17_Chr6g0465611 37.113 97 52 1 12 108 10 97 2.17e-17 73.9
Msa0367760 MtrunA17_Chr6g0486041 30.539 167 98 5 12 164 8 170 2.46e-17 76.6
Msa0367760 MtrunA17_Chr4g0037021 30.303 165 101 4 12 164 8 170 2.75e-17 76.3
Msa0367760 MtrunA17_Chr2g0325101 29.697 165 102 4 12 164 8 170 4.49e-17 75.9
Msa0367760 MtrunA17_Chr2g0331831 47.692 65 33 1 136 200 2 65 1.02e-15 68.6
Msa0367760 MtrunA17_Chr5g0443631 28.402 169 113 3 9 171 103 269 4.22e-15 72.0
Msa0367760 MtrunA17_Chr4g0024431 28.313 166 111 3 12 171 93 256 1.56e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367760 AT5G45130.1 79.500 200 41 0 1 200 1 200 4.11e-119 336
Msa0367760 AT4G19640.1 78.500 200 43 0 1 200 1 200 2.38e-118 334
Msa0367760 AT5G45130.2 80.749 187 36 0 14 200 22 208 2.04e-112 320
Msa0367760 AT4G19640.2 84.286 140 22 0 1 140 1 140 7.22e-83 243
Msa0367760 AT4G19640.3 82.394 142 25 0 1 142 1 142 1.30e-82 243
Msa0367760 AT3G54840.1 62.573 171 63 1 8 177 31 201 5.37e-77 229
Msa0367760 AT3G54840.3 62.651 166 61 1 13 177 2 167 7.31e-75 223
Msa0367760 AT3G54840.2 62.658 158 58 1 8 164 31 188 3.18e-70 212
Msa0367760 AT4G18800.1 39.698 199 110 2 12 200 15 213 5.29e-49 159
Msa0367760 AT4G39990.1 38.835 206 107 4 12 200 19 222 5.58e-49 159
Msa0367760 AT5G45750.1 39.303 201 110 2 12 200 15 215 1.27e-48 158
Msa0367760 AT1G16920.1 46.914 162 86 0 12 173 15 176 3.05e-48 157
Msa0367760 AT3G07410.1 41.872 203 104 3 12 200 14 216 3.86e-48 157
Msa0367760 AT1G07410.1 42.781 187 98 2 12 193 14 196 6.08e-48 156
Msa0367760 AT1G06400.1 40.299 201 108 2 12 200 15 215 6.24e-48 156
Msa0367760 AT5G60860.1 38.119 202 112 2 12 200 15 216 2.31e-47 155
Msa0367760 AT1G09630.1 46.296 162 87 0 12 173 14 175 3.76e-47 154
Msa0367760 AT4G17160.1 43.949 157 88 0 12 168 8 164 5.14e-47 153
Msa0367760 AT4G18430.1 38.119 202 112 2 12 200 15 216 7.21e-47 154
Msa0367760 AT2G44610.1 40.761 184 109 0 12 195 11 194 8.38e-47 153
Msa0367760 AT1G28550.1 43.210 162 92 0 12 173 15 176 1.17e-46 153
Msa0367760 AT1G02130.1 41.026 195 107 3 12 200 10 202 1.55e-46 152
Msa0367760 AT3G15060.1 43.827 162 91 0 12 173 15 176 1.62e-46 152
Msa0367760 AT4G35860.1 42.500 160 92 0 12 171 8 167 3.59e-46 151
Msa0367760 AT2G33870.1 43.827 162 91 0 12 173 15 176 3.69e-46 152
Msa0367760 AT2G22290.1 37.755 196 115 2 12 200 11 206 1.03e-45 150
Msa0367760 AT2G43130.1 39.000 200 111 2 12 200 14 213 1.05e-45 150
Msa0367760 AT5G10260.1 42.236 161 93 0 12 172 11 171 1.20e-45 150
Msa0367760 AT5G47520.1 39.806 206 106 4 12 200 16 220 1.83e-45 150
Msa0367760 AT3G46830.1 39.806 206 104 4 12 200 14 216 1.99e-45 150
Msa0367760 AT3G46830.2 39.806 206 104 4 12 200 14 216 1.99e-45 150
Msa0367760 AT5G65270.1 45.098 153 84 0 12 164 19 171 2.02e-45 150
Msa0367760 AT5G59150.1 45.752 153 83 0 12 164 14 166 6.90e-45 148
Msa0367760 AT3G12160.1 44.444 162 90 0 12 173 17 178 8.58e-45 148
Msa0367760 AT4G17170.1 42.038 157 91 0 12 168 8 164 1.09e-44 148
Msa0367760 AT5G47200.1 39.062 192 114 1 12 200 10 201 2.30e-44 147
Msa0367760 AT4G17530.1 39.175 194 111 3 12 200 10 201 2.38e-44 147
Msa0367760 AT4G39890.1 41.358 162 94 1 12 172 11 172 6.36e-44 146
Msa0367760 AT5G47960.1 42.262 168 97 0 12 179 17 184 7.60e-44 146
Msa0367760 AT5G64990.1 43.125 160 91 0 12 171 9 168 3.30e-43 144
Msa0367760 AT3G11730.1 36.598 194 116 1 12 198 10 203 5.69e-43 143
Msa0367760 AT5G59840.1 37.879 198 113 4 12 199 17 214 9.04e-43 143
Msa0367760 AT1G05810.1 37.931 203 112 3 12 200 14 216 3.14e-42 142
Msa0367760 AT1G73640.1 43.750 160 90 0 12 171 15 174 4.12e-42 142
Msa0367760 AT3G46060.2 36.869 198 115 4 12 199 17 214 7.29e-42 140
Msa0367760 AT3G46060.3 36.869 198 115 4 12 199 17 214 7.29e-42 140
Msa0367760 AT3G46060.1 36.869 198 115 4 12 199 17 214 7.29e-42 140
Msa0367760 AT1G05810.2 37.931 203 112 3 12 200 60 262 9.67e-42 142
Msa0367760 AT1G18200.1 43.125 160 91 0 12 171 15 174 1.59e-41 140
Msa0367760 AT3G53610.2 37.879 198 113 4 12 199 17 214 5.50e-41 138
Msa0367760 AT3G53610.3 37.879 198 113 4 12 199 17 214 5.50e-41 138
Msa0367760 AT3G53610.1 37.879 198 113 4 12 199 17 214 5.50e-41 138
Msa0367760 AT2G31680.1 36.275 204 115 3 12 200 14 217 6.95e-41 138
Msa0367760 AT5G64990.2 41.317 167 91 1 12 171 9 175 2.27e-40 137
Msa0367760 AT1G01200.1 40.957 188 104 3 12 194 30 215 8.58e-40 136
Msa0367760 AT5G03520.1 38.889 198 112 4 12 200 17 214 1.50e-39 135
Msa0367760 AT3G09900.1 37.000 200 115 3 12 200 17 216 8.70e-39 133
Msa0367760 AT4G35860.2 44.167 120 67 0 52 171 2 121 3.79e-35 122
Msa0367760 AT1G22740.1 39.394 165 93 3 12 169 10 174 3.97e-34 120
Msa0367760 AT1G43890.3 39.506 162 95 3 12 171 15 175 7.90e-34 120
Msa0367760 AT1G43890.1 39.506 162 95 3 12 171 15 175 7.90e-34 120
Msa0367760 AT1G43890.2 39.506 162 95 3 12 171 15 175 7.90e-34 120
Msa0367760 AT5G03530.2 36.139 202 118 6 8 200 11 210 9.17e-33 117
Msa0367760 AT5G03530.1 36.139 202 118 6 8 200 11 210 9.17e-33 117
Msa0367760 AT1G52280.1 35.227 176 107 3 12 180 10 185 1.51e-32 116
Msa0367760 AT3G18820.1 38.182 165 95 3 12 169 10 174 2.88e-32 115
Msa0367760 AT3G16100.1 35.632 174 105 3 12 178 10 183 1.57e-31 114
Msa0367760 AT2G21880.1 36.585 164 97 3 12 168 11 174 1.95e-31 114
Msa0367760 AT5G59150.2 46.018 113 61 0 52 164 3 115 3.20e-31 112
Msa0367760 AT1G49300.2 37.195 164 96 3 12 168 10 173 6.12e-31 112
Msa0367760 AT1G49300.1 37.195 164 96 3 12 168 10 173 6.12e-31 112
Msa0367760 AT5G03520.2 36.810 163 94 4 47 200 42 204 1.49e-30 111
Msa0367760 AT5G39620.1 36.747 166 98 4 12 170 7 172 4.09e-30 110
Msa0367760 AT4G09720.1 37.576 165 96 3 12 169 10 174 9.21e-30 109
Msa0367760 AT3G09910.3 34.359 195 125 3 8 200 11 204 1.65e-28 106
Msa0367760 AT3G09910.1 34.359 195 125 3 8 200 11 204 1.65e-28 106
Msa0367760 AT3G09910.2 34.359 195 125 3 8 200 11 204 1.65e-28 106
Msa0367760 AT4G09720.4 36.471 170 96 4 12 169 10 179 4.48e-28 105
Msa0367760 AT4G09720.3 35.227 176 96 4 12 169 10 185 5.62e-27 102
Msa0367760 AT3G09910.5 37.500 168 102 3 8 173 11 177 8.24e-27 101
Msa0367760 AT3G09910.4 37.500 168 102 3 8 173 11 177 8.24e-27 101
Msa0367760 AT5G55080.1 31.250 160 107 3 12 171 15 171 3.63e-25 98.2
Msa0367760 AT5G55190.1 33.750 160 103 3 12 171 15 171 3.61e-24 95.5
Msa0367760 AT5G20010.1 33.750 160 103 3 12 171 15 171 4.23e-24 95.1
Msa0367760 AT5G20020.1 33.750 160 103 3 12 171 15 171 4.61e-24 95.1
Msa0367760 AT2G21880.4 34.694 147 89 3 29 168 3 149 4.78e-24 94.4
Msa0367760 AT2G21880.3 34.694 147 89 3 29 168 3 149 4.78e-24 94.4
Msa0367760 AT4G09720.6 37.226 137 79 3 40 169 4 140 3.27e-22 89.0
Msa0367760 AT4G09720.5 37.226 137 79 3 40 169 4 140 3.27e-22 89.0
Msa0367760 AT4G09720.2 37.226 137 79 3 40 169 4 140 3.27e-22 89.0
Msa0367760 AT2G21880.2 31.707 164 97 4 12 168 11 166 1.28e-21 88.2
Msa0367760 AT2G44690.1 34.118 170 98 5 12 169 20 187 4.25e-20 84.3
Msa0367760 AT4G35950.1 33.939 165 95 5 12 164 8 170 2.83e-19 82.0
Msa0367760 AT3G51300.1 31.928 166 99 4 11 164 7 170 3.57e-19 81.6
Msa0367760 AT2G17800.2 32.727 165 97 4 12 164 8 170 6.70e-19 80.9
Msa0367760 AT2G17800.1 32.727 165 97 4 12 164 8 170 6.70e-19 80.9
Msa0367760 AT4G28950.1 31.515 165 97 5 12 164 8 168 1.07e-18 80.9
Msa0367760 AT5G46025.1 44.186 86 47 1 80 164 14 99 3.05e-18 77.0
Msa0367760 AT3G48040.1 29.940 167 99 5 12 164 10 172 8.91e-18 78.2
Msa0367760 AT5G62880.1 31.737 167 96 6 12 164 10 172 1.30e-17 77.8
Msa0367760 AT4G35020.1 32.121 165 98 5 12 164 8 170 1.50e-17 77.4
Msa0367760 AT4G35020.2 32.121 165 98 5 12 164 8 170 1.50e-17 77.4
Msa0367760 AT4G35020.3 32.121 165 98 5 12 164 8 170 1.50e-17 77.4
Msa0367760 AT5G45970.1 30.303 165 101 4 12 164 8 170 5.31e-17 75.9
Msa0367760 AT1G75840.1 30.909 165 100 5 12 164 8 170 5.76e-17 75.9
Msa0367760 AT1G20090.1 30.909 165 100 5 12 164 7 169 7.41e-17 75.5
Msa0367760 AT3G48040.2 32.558 129 80 4 12 137 10 134 1.22e-15 72.0
Msa0367760 AT5G62880.2 32.558 129 80 4 12 137 10 134 1.29e-15 72.0
Msa0367760 AT3G51290.2 34.109 129 72 3 48 164 644 771 1.22e-14 72.0
Msa0367760 AT5G54840.1 28.743 167 109 5 12 171 103 266 4.63e-13 66.6
Msa0367760 AT4G35020.4 34.314 102 61 3 12 110 8 106 1.11e-12 63.2
Msa0367760 AT4G35020.5 34.314 102 61 3 12 110 8 106 1.11e-12 63.2

Find 64 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCCCTTGGATGCATATT+TGG 0.119558 3_1:+63654780 Msa0367760:three_prime_UTR
GAAAACAATACAAATTAAAA+AGG 0.214243 3_1:-63654656 None:intergenic
TCAGGTTCTTCTTGGTGATA+TGG 0.214614 3_1:+63650145 Msa0367760:intron
GGGTCAATTTCTCGAATTTC+AGG 0.243303 3_1:+63650205 Msa0367760:CDS
AAGATTTAAGCTTTGAAGTT+AGG 0.257925 3_1:-63649952 None:intergenic
CAACAATCTCAATGCAAAAT+TGG 0.267546 3_1:+63650048 Msa0367760:CDS
CAACGGTTAAATTTGAGATT+TGG 0.280373 3_1:+63651540 Msa0367760:CDS
GCAAGAGCCATGACCATGTT+TGG 0.312390 3_1:-63653026 None:intergenic
AACGGTTAAATTTGAGATTT+GGG 0.317804 3_1:+63651541 Msa0367760:CDS
CTTGGGTTATCACTGTTATA+TGG 0.319977 3_1:+63654704 Msa0367760:three_prime_UTR
ATTAACATTGGCTGCAGATT+TGG 0.324617 3_1:-63653654 None:intergenic
AGTGTTTAAGCTGTATTTAC+CGG 0.350418 3_1:+63654628 Msa0367760:exon
TATCCCTTGGATGCATATTT+GGG 0.359069 3_1:+63654781 Msa0367760:three_prime_UTR
CGTGTATATGCCGAGGAAAA+TGG 0.363462 3_1:+63653608 Msa0367760:CDS
GTGGTGCAGGAATCAACAAT+AGG 0.376165 3_1:+63651479 Msa0367760:intron
CGTAGCCATGAGAAGAGAAT+TGG 0.383455 3_1:-63650017 None:intergenic
CAGGTTCTTCTTGGTGATAT+GGG 0.397120 3_1:+63650146 Msa0367760:intron
AGATTTAAGCTTTGAAGTTA+GGG 0.398448 3_1:-63649951 None:intergenic
ATAGACCTGCCGAAGGATCT+AGG 0.399113 3_1:+63654585 Msa0367760:CDS
TGTATGTACTGCACAGAACT+TGG 0.426708 3_1:+63654686 Msa0367760:three_prime_UTR
CAAGAGCCATGACCATGTTT+GGG 0.430409 3_1:-63653025 None:intergenic
TGGTGCAGGAATCAACAATA+GGG 0.434766 3_1:+63651480 Msa0367760:intron
CTTCTTGGTGATATGGGTGC+TGG 0.450654 3_1:+63650152 Msa0367760:CDS
CGATGCAGCCCTAGATCCTT+CGG 0.472784 3_1:-63654594 None:intergenic
ATTTGCCACACAGAACTTGT+TGG 0.477154 3_1:+63654750 Msa0367760:three_prime_UTR
CAGCCAGCTCAAAACCCAGC+AGG 0.480898 3_1:+63654548 Msa0367760:CDS
GATCGGAAGTGAAGAGAGAA+AGG 0.481354 3_1:-63649991 None:intergenic
TCAACAAGAACCATCCCTGC+TGG 0.485332 3_1:-63654563 None:intergenic
ATAAAATACATCATTAACAT+TGG 0.495428 3_1:-63653666 None:intergenic
TGCTGTCAACAAATCTGACT+TGG 0.499215 3_1:+63653046 Msa0367760:CDS
AGCTCAAAACCCAGCAGGGA+TGG 0.507722 3_1:+63654553 Msa0367760:CDS
CTATAGTCTAAAATATCTGT+TGG 0.524888 3_1:+63654818 Msa0367760:three_prime_UTR
AGCTGCGCCTCTGTAATACA+TGG 0.526016 3_1:-63651600 None:intergenic
TAGACTATAGATTTATAGCA+AGG 0.538228 3_1:-63654805 None:intergenic
TTTGAGATTTGGGACACAGC+AGG 0.542819 3_1:+63651551 Msa0367760:CDS
AAATTGCATTCATATACTGT+TGG 0.548433 3_1:-63654731 None:intergenic
TAGACCTGCCGAAGGATCTA+GGG 0.549720 3_1:+63654586 Msa0367760:CDS
TCGATCCAATTCTCTTCTCA+TGG 0.551685 3_1:+63650012 Msa0367760:exon
GAGAAGAGAATTGGATCGAT+CGG 0.560023 3_1:-63650008 None:intergenic
CAACAAGAACCATCCCTGCT+GGG 0.567898 3_1:-63654562 None:intergenic
AGGACCCAAATATGCATCCA+AGG 0.569874 3_1:-63654785 None:intergenic
GTATGTACTGCACAGAACTT+GGG 0.574386 3_1:+63654687 Msa0367760:three_prime_UTR
CCTTCTCACGAGCTAAGAAG+TGG 0.589371 3_1:+63652293 Msa0367760:CDS
ACAAGAGAGATACCATAGCT+TGG 0.597101 3_1:+63651574 Msa0367760:CDS
TCTCTTCTCATGGCTACGAT+CGG 0.597849 3_1:+63650022 Msa0367760:exon
GCAGCCCTAGATCCTTCGGC+AGG 0.598606 3_1:-63654590 None:intergenic
ATTGGCTGCAGATTTGGCAG+AGG 0.603013 3_1:-63653648 None:intergenic
AATACATGGGAGCCAAGCTA+TGG 0.603780 3_1:-63651586 None:intergenic
GCTTGCAGGCAACCCAAACA+TGG 0.608135 3_1:+63653013 Msa0367760:intron
GTCCAAGAGCTTCAAAAGCA+AGG 0.610196 3_1:+63652316 Msa0367760:CDS
GGACCCAAATATGCATCCAA+GGG 0.612652 3_1:-63654784 None:intergenic
AACAGCTAAAAGATTACCAA+GGG 0.615040 3_1:+63654523 Msa0367760:intron
CCACTTCTTAGCTCGTGAGA+AGG 0.618362 3_1:-63652293 None:intergenic
AGCCAGCTCAAAACCCAGCA+GGG 0.622894 3_1:+63654549 Msa0367760:CDS
AGGCAACCCAAACATGGTCA+TGG 0.632739 3_1:+63653019 Msa0367760:intron
AAACAGCTAAAAGATTACCA+AGG 0.641621 3_1:+63654522 Msa0367760:intron
CTTGTTGATAGACCTGCCGA+AGG 0.644031 3_1:+63654578 Msa0367760:CDS
GGAAGCTCGTGTATATGCCG+AGG 0.658380 3_1:+63653601 Msa0367760:intron
GCTGCGCCTCTGTAATACAT+GGG 0.659907 3_1:-63651599 None:intergenic
ATTAGCAGTAAATGACGCAA+CGG 0.668502 3_1:+63651523 Msa0367760:CDS
GGTGCAGGAATCAACAATAG+GGG 0.672375 3_1:+63651481 Msa0367760:intron
CTTCTCACGAGCTAAGAAGT+GGG 0.674595 3_1:+63652294 Msa0367760:CDS
TTGAACCAACAAGTTCTGTG+TGG 0.689121 3_1:-63654755 None:intergenic
TTGGCTCCCATGTATTACAG+AGG 0.724540 3_1:+63651593 Msa0367760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAATACAAATTAAAAA+GGG - chr3_1:63654658-63654677 None:intergenic 10.0%
!! ATCTATAATATTTAACATGA+TGG + chr3_1:63651768-63651787 Msa0367760:intron 15.0%
!!! TAACATATCAATTTTAAAAC+AGG - chr3_1:63651829-63651848 None:intergenic 15.0%
!! AATAACTTATTAATCATTTG+AGG + chr3_1:63652545-63652564 Msa0367760:intron 15.0%
!!! GATTATTGATTATAGTATAT+TGG - chr3_1:63653532-63653551 None:intergenic 15.0%
!! ATAAAATACATCATTAACAT+TGG - chr3_1:63653669-63653688 None:intergenic 15.0%
!!! AATGATGTATTTTATGAAAT+AGG + chr3_1:63653674-63653693 Msa0367760:CDS 15.0%
!!! TAAACTTTCCTTTTTTATAA+GGG - chr3_1:63653766-63653785 None:intergenic 15.0%
!! TTATAAAAAAGGAAAGTTTA+GGG + chr3_1:63653766-63653785 Msa0367760:intron 15.0%
!! GAAAACAATACAAATTAAAA+AGG - chr3_1:63654659-63654678 None:intergenic 15.0%
!! GGAATTAAAAAAAAAGATGA+AGG - chr3_1:63650097-63650116 None:intergenic 20.0%
!!! TTCATCAATTTTGATTTGAT+TGG + chr3_1:63650233-63650252 Msa0367760:intron 20.0%
!!! TCATCAATTTTGATTTGATT+GGG + chr3_1:63650234-63650253 Msa0367760:intron 20.0%
!!! AAGATTTTTCAATTAGAAGT+TGG + chr3_1:63650335-63650354 Msa0367760:intron 20.0%
!!! AGATTTTTCAATTAGAAGTT+GGG + chr3_1:63650336-63650355 Msa0367760:intron 20.0%
!! TACAATAAATAATTTCGTGA+TGG + chr3_1:63650844-63650863 Msa0367760:intron 20.0%
!! AATTGAATGTAAATTTGTGT+AGG - chr3_1:63651172-63651191 None:intergenic 20.0%
!!! GTAAGTATAAGTTAGAATTT+TGG + chr3_1:63651266-63651285 Msa0367760:intron 20.0%
!! TCAAATAATAAGTATCATTC+TGG - chr3_1:63651969-63651988 None:intergenic 20.0%
!!! AATTTTGTACCAATTATAGT+TGG - chr3_1:63652078-63652097 None:intergenic 20.0%
!! ACTATAATTGGTACAAAATT+TGG + chr3_1:63652078-63652097 Msa0367760:intron 20.0%
!!! AAAGCAAGGTATTAATTTTT+TGG + chr3_1:63652330-63652349 Msa0367760:intron 20.0%
!! TAGAATTGATATATTGCAAA+AGG + chr3_1:63652396-63652415 Msa0367760:intron 20.0%
!!! TGTTTTACTAGATTCAATTT+TGG + chr3_1:63652522-63652541 Msa0367760:intron 20.0%
!! ATTCTTAATCAACATACAAT+AGG + chr3_1:63652825-63652844 Msa0367760:intron 20.0%
!!! TCAAAATTGAAGTTTTATGA+TGG - chr3_1:63653459-63653478 None:intergenic 20.0%
!! CAGATTAAAGCATATATAAT+AGG - chr3_1:63653710-63653729 None:intergenic 20.0%
!!! AAATGGTCTTATTTTATTCT+TGG + chr3_1:63653734-63653753 Msa0367760:intron 20.0%
!!! CTAAACTTTCCTTTTTTATA+AGG - chr3_1:63653767-63653786 None:intergenic 20.0%
!! CTTATAAAAAAGGAAAGTTT+AGG + chr3_1:63653765-63653784 Msa0367760:intron 20.0%
!! TATAAAAAAGGAAAGTTTAG+GGG + chr3_1:63653767-63653786 Msa0367760:intron 20.0%
!! TTTATCAAATCTTCTCTAAT+TGG + chr3_1:63653912-63653931 Msa0367760:intron 20.0%
!! CATGAAATTTAACAGAAATT+CGG - chr3_1:63654384-63654403 None:intergenic 20.0%
!! ATCATAAAATGTAGATCAAT+TGG - chr3_1:63654421-63654440 None:intergenic 20.0%
!!! TTAATTTGTATTGTTTTCAG+TGG + chr3_1:63654661-63654680 Msa0367760:three_prime_UTR 20.0%
!!! AGATTTAAGCTTTGAAGTTA+GGG - chr3_1:63649954-63649973 None:intergenic 25.0%
!!! AAGATTTAAGCTTTGAAGTT+AGG - chr3_1:63649955-63649974 None:intergenic 25.0%
! GATTAAAAAACGAAGTTAGA+GGG - chr3_1:63650127-63650146 None:intergenic 25.0%
! TGATTAAAAAACGAAGTTAG+AGG - chr3_1:63650128-63650147 None:intergenic 25.0%
!!! TCTAACTTCGTTTTTTAATC+AGG + chr3_1:63650127-63650146 Msa0367760:intron 25.0%
!!! TTTTTTAATCAGGTTCTTCT+TGG + chr3_1:63650137-63650156 Msa0367760:intron 25.0%
!!! TCTTGTTTTAAGATTTGTCA+AGG + chr3_1:63650184-63650203 Msa0367760:CDS 25.0%
!!! CTTGTTTTAAGATTTGTCAA+GGG + chr3_1:63650185-63650204 Msa0367760:CDS 25.0%
!! ACTAATTTTCAGAGTTATTG+AGG + chr3_1:63650404-63650423 Msa0367760:intron 25.0%
! TACAATAAATAACTTCGTGA+TGG + chr3_1:63650660-63650679 Msa0367760:intron 25.0%
! AAATAATTTCGTGATGGTTA+TGG + chr3_1:63650850-63650869 Msa0367760:intron 25.0%
!!! AGCTTTAAATAATTGTAGTC+TGG + chr3_1:63651289-63651308 Msa0367760:intron 25.0%
! TTTAAATAATTGTAGTCTGG+TGG + chr3_1:63651292-63651311 Msa0367760:intron 25.0%
! TTAAATAATTGTAGTCTGGT+GGG + chr3_1:63651293-63651312 Msa0367760:intron 25.0%
! ATTATGTTAATGATGCTTCT+GGG + chr3_1:63651363-63651382 Msa0367760:intron 25.0%
!! ATTTTGTTCACGAGTTTATA+TGG + chr3_1:63651450-63651469 Msa0367760:intron 25.0%
!! AACGGTTAAATTTGAGATTT+GGG + chr3_1:63651541-63651560 Msa0367760:CDS 25.0%
! CAAAATTACAAGTCAAAAAC+TGG - chr3_1:63651716-63651735 None:intergenic 25.0%
! TGCGAAGTATAACTTAAAAA+TGG + chr3_1:63651888-63651907 Msa0367760:intron 25.0%
! TTCATACTTATTAAACTTCC+AGG - chr3_1:63651937-63651956 None:intergenic 25.0%
! ATATTATCAGCTCTTTATCA+GGG + chr3_1:63651993-63652012 Msa0367760:intron 25.0%
!! AATTGTAATGAGGATTTTTC+TGG - chr3_1:63652033-63652052 None:intergenic 25.0%
! TATTCGTCTAATTTCTCAAT+AGG + chr3_1:63652232-63652251 Msa0367760:intron 25.0%
! ATTCGTCTAATTTCTCAATA+GGG + chr3_1:63652233-63652252 Msa0367760:intron 25.0%
!!! AGGTATTAATTTTTTGGTTC+AGG + chr3_1:63652336-63652355 Msa0367760:intron 25.0%
! AAACATAAAAGATAACACGA+GGG - chr3_1:63652507-63652526 None:intergenic 25.0%
! AAAACATAAAAGATAACACG+AGG - chr3_1:63652508-63652527 None:intergenic 25.0%
!! TGTTTTATAATAGAACAGCA+TGG + chr3_1:63652582-63652601 Msa0367760:intron 25.0%
! CATGGTATAAAAAGCAATAT+TGG - chr3_1:63653115-63653134 None:intergenic 25.0%
! AGAGTATAGAAAAAGAACAA+TGG + chr3_1:63653153-63653172 Msa0367760:intron 25.0%
!!! TAATCAATAATCACTTTTCC+TGG + chr3_1:63653540-63653559 Msa0367760:intron 25.0%
! AGACTTTATGAATTATGAGA+AGG - chr3_1:63653973-63653992 None:intergenic 25.0%
! TTCATAAAGTCTTCTCTAAT+TGG + chr3_1:63653981-63654000 Msa0367760:intron 25.0%
!! CAAAAAGGGTACATATAATA+TGG - chr3_1:63654075-63654094 None:intergenic 25.0%
!! CATATTATATGTACCCTTTT+TGG + chr3_1:63654073-63654092 Msa0367760:intron 25.0%
! AACATTAAAGTGACCAAAAA+GGG - chr3_1:63654089-63654108 None:intergenic 25.0%
! AAAGTGTAATAAGGACAAAA+GGG - chr3_1:63654124-63654143 None:intergenic 25.0%
! TAAAGTGTAATAAGGACAAA+AGG - chr3_1:63654125-63654144 None:intergenic 25.0%
! TGTTGCAATAAAGTGTAATA+AGG - chr3_1:63654133-63654152 None:intergenic 25.0%
! CCTATGAAAAAACAGAAATT+AGG - chr3_1:63654246-63654265 None:intergenic 25.0%
!!! CCTAATTTCTGTTTTTTCAT+AGG + chr3_1:63654243-63654262 Msa0367760:intron 25.0%
! TAATCAAAGTTTGCAGTTTA+TGG - chr3_1:63654475-63654494 None:intergenic 25.0%
! CAATACAAATTAAAAAGGGA+AGG - chr3_1:63654654-63654673 None:intergenic 25.0%
! AAATTGCATTCATATACTGT+TGG - chr3_1:63654734-63654753 None:intergenic 25.0%
! TAGACTATAGATTTATAGCA+AGG - chr3_1:63654808-63654827 None:intergenic 25.0%
!! CTATAGTCTAAAATATCTGT+TGG + chr3_1:63654818-63654837 Msa0367760:three_prime_UTR 25.0%
!! ATTCTATTGCTTTTCGCTTA+CGG - chr3_1:63649879-63649898 None:intergenic 30.0%
!! AGCTTAAATCTTTCGCTTTT+TGG + chr3_1:63649963-63649982 Msa0367760:five_prime_UTR 30.0%
!!! GCTTAAATCTTTCGCTTTTT+GGG + chr3_1:63649964-63649983 Msa0367760:five_prime_UTR 30.0%
CAACAATCTCAATGCAAAAT+TGG + chr3_1:63650048-63650067 Msa0367760:CDS 30.0%
! GGAAGTTGTTTAAGTTCAAT+GGG + chr3_1:63650255-63650274 Msa0367760:intron 30.0%
GTCATGTATTACCTATACTT+TGG + chr3_1:63650525-63650544 Msa0367760:intron 30.0%
AAGACTTGAATCCAAAGTAT+AGG - chr3_1:63650539-63650558 None:intergenic 30.0%
AAATAACTTCGTGATGGTTA+TGG + chr3_1:63650666-63650685 Msa0367760:intron 30.0%
TAGCACTTACACTTTGAATA+AGG + chr3_1:63650779-63650798 Msa0367760:intron 30.0%
CCACTAATAATGTAAGAAAG+TGG - chr3_1:63651031-63651050 None:intergenic 30.0%
CCACTTTCTTACATTATTAG+TGG + chr3_1:63651028-63651047 Msa0367760:intron 30.0%
TAAATAATTGTAGTCTGGTG+GGG + chr3_1:63651294-63651313 Msa0367760:intron 30.0%
! TTTCTTCTTTCTTTTCTCTG+AGG + chr3_1:63651328-63651347 Msa0367760:intron 30.0%
GATTATGTTAATGATGCTTC+TGG + chr3_1:63651362-63651381 Msa0367760:intron 30.0%
! CAACGGTTAAATTTGAGATT+TGG + chr3_1:63651540-63651559 Msa0367760:CDS 30.0%
! TTTTTGAATACCTACTTCGT+TGG + chr3_1:63651680-63651699 Msa0367760:intron 30.0%
! TTTTGAATACCTACTTCGTT+GGG + chr3_1:63651681-63651700 Msa0367760:intron 30.0%
AAAAATGTTCTGATTCTGAC+TGG + chr3_1:63651848-63651867 Msa0367760:intron 30.0%
AAAATGTTCTGATTCTGACT+GGG + chr3_1:63651849-63651868 Msa0367760:intron 30.0%
CATATTATCAGCTCTTTATC+AGG + chr3_1:63651992-63652011 Msa0367760:intron 30.0%
TCATTACAATTGTATGCACA+GGG + chr3_1:63652042-63652061 Msa0367760:intron 30.0%
!!! CATCAATTTTTTCCTAAACG+TGG + chr3_1:63652131-63652150 Msa0367760:intron 30.0%
TACTTCTATCTTCTATTCAC+AGG + chr3_1:63652267-63652286 Msa0367760:intron 30.0%
TAAAACCATTTCCAAACTTC+TGG + chr3_1:63652434-63652453 Msa0367760:intron 30.0%
ATGGAAAATGCTTTACTAGA+AGG - chr3_1:63652466-63652485 None:intergenic 30.0%
TCAAAAGTTAAATGTGTCTC+TGG - chr3_1:63652707-63652726 None:intergenic 30.0%
TTACTATACATCTTGCTAGA+AGG + chr3_1:63652781-63652800 Msa0367760:intron 30.0%
TTCCTTTCTCTAGTAATACT+TGG + chr3_1:63652922-63652941 Msa0367760:intron 30.0%
AACCAAGTATTACTAGAGAA+AGG - chr3_1:63652927-63652946 None:intergenic 30.0%
TTCTCTAGTAATACTTGGTT+TGG + chr3_1:63652927-63652946 Msa0367760:intron 30.0%
GAGAATATTGACACTTACTT+CGG - chr3_1:63653093-63653112 None:intergenic 30.0%
! TGTTATTGATTGCTTAGGAT+AGG - chr3_1:63653196-63653215 None:intergenic 30.0%
!! TGCTTTGTTATTGATTGCTT+AGG - chr3_1:63653201-63653220 None:intergenic 30.0%
! CAATCAATAACAAAGCATCA+GGG + chr3_1:63653204-63653223 Msa0367760:intron 30.0%
! AATCAATAACAAAGCATCAG+GGG + chr3_1:63653205-63653224 Msa0367760:intron 30.0%
TTAGCAAAGAAGTTAATCAC+AGG + chr3_1:63653249-63653268 Msa0367760:intron 30.0%
!!! TCAATTGCTTTTGAAGTGTT+TGG + chr3_1:63653318-63653337 Msa0367760:intron 30.0%
! AGCATGATTGGTAATTTCAT+AGG + chr3_1:63653498-63653517 Msa0367760:intron 30.0%
TTTCGATTCATTGATATTGC+AGG + chr3_1:63653580-63653599 Msa0367760:intron 30.0%
! GAAAAACAAACCATTTTCCT+CGG - chr3_1:63653621-63653640 None:intergenic 30.0%
!!! GGAAAATGGTTTGTTTTTCA+TGG + chr3_1:63653622-63653641 Msa0367760:CDS 30.0%
ATGCTTTAATCTGCAGAAAA+TGG + chr3_1:63653717-63653736 Msa0367760:intron 30.0%
GGTTGAATCCCTTATAAAAA+AGG + chr3_1:63653755-63653774 Msa0367760:intron 30.0%
TGAATATGATAGCAATGTCT+TGG - chr3_1:63653867-63653886 None:intergenic 30.0%
CAACATTAAAGTGACCAAAA+AGG - chr3_1:63654090-63654109 None:intergenic 30.0%
ACACTTTATTGCAACATTCA+TGG + chr3_1:63654137-63654156 Msa0367760:intron 30.0%
CACTTTATTGCAACATTCAT+GGG + chr3_1:63654138-63654157 Msa0367760:intron 30.0%
TAGGCAAAATGTTAGTAAGT+CGG + chr3_1:63654262-63654281 Msa0367760:intron 30.0%
TACACAAGCAATTGTAAGTT+AGG - chr3_1:63654503-63654522 None:intergenic 30.0%
AAACAGCTAAAAGATTACCA+AGG + chr3_1:63654522-63654541 Msa0367760:intron 30.0%
AACAGCTAAAAGATTACCAA+GGG + chr3_1:63654523-63654542 Msa0367760:intron 30.0%
AGTGTTTAAGCTGTATTTAC+CGG + chr3_1:63654628-63654647 Msa0367760:exon 30.0%
! ACGAAGTTAGAGGGTATAAT+CGG - chr3_1:63650118-63650137 None:intergenic 35.0%
! GGGAAGTTGTTTAAGTTCAA+TGG + chr3_1:63650254-63650273 Msa0367760:intron 35.0%
ACATTACAGTGACAACATGT+CGG - chr3_1:63650482-63650501 None:intergenic 35.0%
ATGTTGTCACTGTAATGTGA+TGG + chr3_1:63650484-63650503 Msa0367760:intron 35.0%
TCACTGTAATGTGATGGTTA+CGG + chr3_1:63650490-63650509 Msa0367760:intron 35.0%
TAGCCCTTACACTTTGATTA+AGG + chr3_1:63650596-63650615 Msa0367760:intron 35.0%
CCTCCTTAATCAAAGTGTAA+GGG - chr3_1:63650602-63650621 None:intergenic 35.0%
ACCTCCTTAATCAAAGTGTA+AGG - chr3_1:63650603-63650622 None:intergenic 35.0%
AAGACTTGAATCCGAAGTAT+CGG - chr3_1:63650722-63650741 None:intergenic 35.0%
TAATTTCGTGATGGTTATGG+AGG + chr3_1:63650853-63650872 Msa0367760:intron 35.0%
!! TACTAGTAAGTTCTGAAGCA+TGG + chr3_1:63651085-63651104 Msa0367760:intron 35.0%
AAATAATTGTAGTCTGGTGG+GGG + chr3_1:63651295-63651314 Msa0367760:intron 35.0%
!!! TTTTGAGCCCTGTTATTTTG+TGG + chr3_1:63651392-63651411 Msa0367760:intron 35.0%
! GGTGATGTGCTTTAAATGTA+TGG + chr3_1:63651417-63651436 Msa0367760:intron 35.0%
! CGAGTTTATATGGTCTTTTG+TGG + chr3_1:63651460-63651479 Msa0367760:intron 35.0%
ATTAGCAGTAAATGACGCAA+CGG + chr3_1:63651523-63651542 Msa0367760:CDS 35.0%
TTAGTTAACAGAGCAGACAT+AGG + chr3_1:63651791-63651810 Msa0367760:intron 35.0%
CTGTGCATACAATTGTAATG+AGG - chr3_1:63652043-63652062 None:intergenic 35.0%
CTCATTACAATTGTATGCAC+AGG + chr3_1:63652041-63652060 Msa0367760:intron 35.0%
CCAATTATAGTTGGAACAAG+TGG - chr3_1:63652069-63652088 None:intergenic 35.0%
CCACTTGTTCCAACTATAAT+TGG + chr3_1:63652066-63652085 Msa0367760:intron 35.0%
GAAGAGATCGAATATGCTAA+CGG + chr3_1:63652153-63652172 Msa0367760:intron 35.0%
AAGAGATCGAATATGCTAAC+GGG + chr3_1:63652154-63652173 Msa0367760:intron 35.0%
! GGATTCTTTCTTTTGTCTTG+TGG + chr3_1:63652175-63652194 Msa0367760:intron 35.0%
! TCTTTCTTTTGTCTTGTGGT+TGG + chr3_1:63652179-63652198 Msa0367760:intron 35.0%
! CTTTCTTTTGTCTTGTGGTT+GGG + chr3_1:63652180-63652199 Msa0367760:intron 35.0%
! TGCATGTAAGTATTGTGAAC+AGG + chr3_1:63652652-63652671 Msa0367760:intron 35.0%
! GCATGTAAGTATTGTGAACA+GGG + chr3_1:63652653-63652672 Msa0367760:intron 35.0%
CAATCAAACATTGTCTGCTT+TGG + chr3_1:63652896-63652915 Msa0367760:intron 35.0%
! AATTTCATGTTGTTGCTTGC+AGG + chr3_1:63652999-63653018 Msa0367760:intron 35.0%
GCACATAACACTTACTAACA+TGG - chr3_1:63653133-63653152 None:intergenic 35.0%
! GCAATCAATAACAAAGCATC+AGG + chr3_1:63653203-63653222 Msa0367760:intron 35.0%
CTCCATCAGATTTCACTAAT+TGG + chr3_1:63653287-63653306 Msa0367760:intron 35.0%
GACCAATTAGTGAAATCTGA+TGG - chr3_1:63653292-63653311 None:intergenic 35.0%
!!! TTGCTTTTGAAGTGTTTGGA+AGG + chr3_1:63653322-63653341 Msa0367760:intron 35.0%
!!! TGCTTTTGAAGTGTTTGGAA+GGG + chr3_1:63653323-63653342 Msa0367760:intron 35.0%
ATTACCAATCATGCTGCAAT+GGG - chr3_1:63653493-63653512 None:intergenic 35.0%
AATTACCAATCATGCTGCAA+TGG - chr3_1:63653494-63653513 None:intergenic 35.0%
ATCGAAAGTGATAAACCAGT+AGG - chr3_1:63653567-63653586 None:intergenic 35.0%
! ATTAACATTGGCTGCAGATT+TGG - chr3_1:63653657-63653676 None:intergenic 35.0%
AATATTATTAGCCCGAAGAG+TGG + chr3_1:63653790-63653809 Msa0367760:intron 35.0%
ATATTATTAGCCCGAAGAGT+GGG + chr3_1:63653791-63653810 Msa0367760:intron 35.0%
CTCTAATTGGTTATAAGCCA+TGG + chr3_1:63653925-63653944 Msa0367760:intron 35.0%
AGTCTTCTCTAATTGGCTAT+TGG + chr3_1:63653988-63654007 Msa0367760:intron 35.0%
AGGACAAAAGGGAAAATTTC+TGG - chr3_1:63654113-63654132 None:intergenic 35.0%
GATACGCCAATAACATAAAG+CGG - chr3_1:63654192-63654211 None:intergenic 35.0%
GAACCTCCTTAAAACTCATT+TGG + chr3_1:63654316-63654335 Msa0367760:intron 35.0%
!!! ACACCAAATGAGTTTTAAGG+AGG - chr3_1:63654322-63654341 None:intergenic 35.0%
! GAGACACCAAATGAGTTTTA+AGG - chr3_1:63654325-63654344 None:intergenic 35.0%
ACAAATTAAAAAGGGAAGGC+CGG - chr3_1:63654650-63654669 None:intergenic 35.0%
CTTGGGTTATCACTGTTATA+TGG + chr3_1:63654704-63654723 Msa0367760:three_prime_UTR 35.0%
! GTTGGTTCAAAAATATCCCT+TGG + chr3_1:63654768-63654787 Msa0367760:three_prime_UTR 35.0%
ATATCCCTTGGATGCATATT+TGG + chr3_1:63654780-63654799 Msa0367760:three_prime_UTR 35.0%
TATCCCTTGGATGCATATTT+GGG + chr3_1:63654781-63654800 Msa0367760:three_prime_UTR 35.0%
GAGAAGAGAATTGGATCGAT+CGG - chr3_1:63650011-63650030 None:intergenic 40.0%
TCGATCCAATTCTCTTCTCA+TGG + chr3_1:63650012-63650031 Msa0367760:exon 40.0%
AGATGAAGGAAGAGAAACAG+AGG - chr3_1:63650083-63650102 None:intergenic 40.0%
! TCAGGTTCTTCTTGGTGATA+TGG + chr3_1:63650145-63650164 Msa0367760:intron 40.0%
! CAGGTTCTTCTTGGTGATAT+GGG + chr3_1:63650146-63650165 Msa0367760:intron 40.0%
GGGTCAATTTCTCGAATTTC+AGG + chr3_1:63650205-63650224 Msa0367760:CDS 40.0%
TCTTGTCTGATGTTCCACAA+TGG + chr3_1:63650555-63650574 Msa0367760:intron 40.0%
CCCTTACACTTTGATTAAGG+AGG + chr3_1:63650599-63650618 Msa0367760:intron 40.0%
TACCACAGTAATGACACATG+CGG - chr3_1:63650635-63650654 None:intergenic 40.0%
TAACTTCGTGATGGTTATGG+AGG + chr3_1:63650669-63650688 Msa0367760:intron 40.0%
CTAACTACTACCTCCATTGT+GGG - chr3_1:63650571-63650590 None:intergenic 40.0%
ACCACAATAGTGACACATGT+CGG - chr3_1:63650818-63650837 None:intergenic 40.0%
TAGTGACTAGTGACACATGT+CGG - chr3_1:63650921-63650940 None:intergenic 40.0%
TGTCAGTGTCAGTGTTTCAT+AGG + chr3_1:63651051-63651070 Msa0367760:intron 40.0%
CAGGAAACACCTAATCTAAG+AGG - chr3_1:63651114-63651133 None:intergenic 40.0%
TATCCATGTCAGTGTCTTGT+CGG + chr3_1:63651226-63651245 Msa0367760:intron 40.0%
TCACCAGCCACAAAATAACA+GGG - chr3_1:63651402-63651421 None:intergenic 40.0%
ATCACCAGCCACAAAATAAC+AGG - chr3_1:63651403-63651422 None:intergenic 40.0%
! TATATGGTCTTTTGTGGTGC+AGG + chr3_1:63651466-63651485 Msa0367760:intron 40.0%
TGGTGCAGGAATCAACAATA+GGG + chr3_1:63651480-63651499 Msa0367760:intron 40.0%
ACAAGAGAGATACCATAGCT+TGG + chr3_1:63651574-63651593 Msa0367760:CDS 40.0%
ATTCGATCTCTTCCACGTTT+AGG - chr3_1:63652146-63652165 None:intergenic 40.0%
!!! TACCTTGCTTTTGAAGCTCT+TGG - chr3_1:63652321-63652340 None:intergenic 40.0%
ACCATTTCCAAACTTCTGGA+TGG + chr3_1:63652438-63652457 Msa0367760:intron 40.0%
ACCATCCAGAAGTTTGGAAA+TGG - chr3_1:63652442-63652461 None:intergenic 40.0%
GACATTGACATTGGCAGATA+TGG - chr3_1:63652485-63652504 None:intergenic 40.0%
TGCTGTCAACAAATCTGACT+TGG + chr3_1:63653046-63653065 Msa0367760:CDS 40.0%
TATTATTAGCCCGAAGAGTG+GGG + chr3_1:63653792-63653811 Msa0367760:intron 40.0%
CAATGTCTTGGAGTGTAAAG+TGG - chr3_1:63653855-63653874 None:intergenic 40.0%
GAAGACAAGTTTCAGGAACA+AGG - chr3_1:63654049-63654068 None:intergenic 40.0%
! ATGGACTGAAGACAAGTTTC+AGG - chr3_1:63654056-63654075 None:intergenic 40.0%
! ATTTTCCTTCTGTTCCTAGC+AGG + chr3_1:63654163-63654182 Msa0367760:intron 40.0%
AGGCTTCCGCTTTATGTTAT+TGG + chr3_1:63654183-63654202 Msa0367760:intron 40.0%
GGAATATGTCCCACATATGT+AGG - chr3_1:63654363-63654382 None:intergenic 40.0%
TGTATGTACTGCACAGAACT+TGG + chr3_1:63654686-63654705 Msa0367760:three_prime_UTR 40.0%
GTATGTACTGCACAGAACTT+GGG + chr3_1:63654687-63654706 Msa0367760:three_prime_UTR 40.0%
ATTTGCCACACAGAACTTGT+TGG + chr3_1:63654750-63654769 Msa0367760:three_prime_UTR 40.0%
TTGAACCAACAAGTTCTGTG+TGG - chr3_1:63654758-63654777 None:intergenic 40.0%
GATCGGAAGTGAAGAGAGAA+AGG - chr3_1:63649994-63650013 None:intergenic 45.0%
CGTAGCCATGAGAAGAGAAT+TGG - chr3_1:63650020-63650039 None:intergenic 45.0%
TCTCTTCTCATGGCTACGAT+CGG + chr3_1:63650022-63650041 Msa0367760:exon 45.0%
CTGTAATGTGATGGTTACGG+AGG + chr3_1:63650493-63650512 Msa0367760:intron 45.0%
TGTCTGATGTTCCACAATGG+AGG + chr3_1:63650558-63650577 Msa0367760:intron 45.0%
GCTAACTACTACCTCCATTG+TGG - chr3_1:63650572-63650591 None:intergenic 45.0%
TATCGGCAATACATGGCTGA+TGG - chr3_1:63650705-63650724 None:intergenic 45.0%
GCCATGTATTGCCGATACTT+CGG + chr3_1:63650708-63650727 Msa0367760:intron 45.0%
!! TCCGAAGTATCGGCAATACA+TGG - chr3_1:63650712-63650731 None:intergenic 45.0%
TCTTGTCTGATGTCCCACAA+TGG + chr3_1:63650738-63650757 Msa0367760:intron 45.0%
GCTAACTACTACCTCCATTG+TGG - chr3_1:63650572-63650591 None:intergenic 45.0%
! TCCGACATGTGTCACTATTG+TGG + chr3_1:63650814-63650833 Msa0367760:intron 45.0%
ATGTAAACACACGCTGACAC+AGG - chr3_1:63650998-63651017 None:intergenic 45.0%
GCATGGACACCTCTTAGATT+AGG + chr3_1:63651102-63651121 Msa0367760:intron 45.0%
TGACATGGATATGTCGACAC+AGG - chr3_1:63651217-63651236 None:intergenic 45.0%
GTGGTGCAGGAATCAACAAT+AGG + chr3_1:63651479-63651498 Msa0367760:intron 45.0%
GGTGCAGGAATCAACAATAG+GGG + chr3_1:63651481-63651500 Msa0367760:intron 45.0%
! TTTGAGATTTGGGACACAGC+AGG + chr3_1:63651551-63651570 Msa0367760:CDS 45.0%
AATACATGGGAGCCAAGCTA+TGG - chr3_1:63651589-63651608 None:intergenic 45.0%
TTGGCTCCCATGTATTACAG+AGG + chr3_1:63651593-63651612 Msa0367760:CDS 45.0%
CAAAGATTGCCCAACGAAGT+AGG - chr3_1:63651693-63651712 None:intergenic 45.0%
ATTGAGACACAACTCAGACC+TGG + chr3_1:63651916-63651935 Msa0367760:intron 45.0%
CTTCTCACGAGCTAAGAAGT+GGG + chr3_1:63652294-63652313 Msa0367760:CDS 45.0%
GTCCAAGAGCTTCAAAAGCA+AGG + chr3_1:63652316-63652335 Msa0367760:CDS 45.0%
!! GAAGGTACCATCCAGAAGTT+TGG - chr3_1:63652448-63652467 None:intergenic 45.0%
AACACGAGGGACATTGACAT+TGG - chr3_1:63652494-63652513 None:intergenic 45.0%
CAAGAGCCATGACCATGTTT+GGG - chr3_1:63653028-63653047 None:intergenic 45.0%
ATTGTGTGTGTGTGTGTGTG+TGG + chr3_1:63653369-63653388 Msa0367760:intron 45.0%
TTGTGTGTGTGTGTGTGTGT+GGG + chr3_1:63653370-63653389 Msa0367760:intron 45.0%
!! ATCACTTTTCCTGGACCTAC+TGG + chr3_1:63653549-63653568 Msa0367760:intron 45.0%
AGTGATAAACCAGTAGGTCC+AGG - chr3_1:63653561-63653580 None:intergenic 45.0%
CGTGTATATGCCGAGGAAAA+TGG + chr3_1:63653608-63653627 Msa0367760:CDS 45.0%
AAGAAAGCTTCCCCACTCTT+CGG - chr3_1:63653805-63653824 None:intergenic 45.0%
! AGTGGGGAAGCTTTCTTTTG+AGG + chr3_1:63653808-63653827 Msa0367760:intron 45.0%
! GTGGGGAAGCTTTCTTTTGA+GGG + chr3_1:63653809-63653828 Msa0367760:intron 45.0%
CTCTAATTGGCTATTGGCCA+TGG + chr3_1:63653994-63654013 Msa0367760:intron 45.0%
AGGTTTGGATAACTGTGCCA+TGG - chr3_1:63654014-63654033 None:intergenic 45.0%
AGGCATGTCATGAGAAGGTT+TGG - chr3_1:63654029-63654048 None:intergenic 45.0%
GAACAAGGCATGTCATGAGA+AGG - chr3_1:63654034-63654053 None:intergenic 45.0%
TCACCAATCGCCTACATATG+TGG + chr3_1:63654350-63654369 Msa0367760:intron 45.0%
CACCAATCGCCTACATATGT+GGG + chr3_1:63654351-63654370 Msa0367760:intron 45.0%
GGACCCAAATATGCATCCAA+GGG - chr3_1:63654787-63654806 None:intergenic 45.0%
AGGACCCAAATATGCATCCA+AGG - chr3_1:63654788-63654807 None:intergenic 45.0%
! CTTCTTGGTGATATGGGTGC+TGG + chr3_1:63650152-63650171 Msa0367760:CDS 50.0%
! GTCCGCATGTGTCATTACTG+TGG + chr3_1:63650630-63650649 Msa0367760:intron 50.0%
TGTCTGATGTCCCACAATGG+AGG + chr3_1:63650741-63650760 Msa0367760:intron 50.0%
! TCAGTGGTGTCAGTGCTACA+CGG - chr3_1:63650952-63650971 None:intergenic 50.0%
!! GTAGCACTGACACCACTGAT+TGG + chr3_1:63650953-63650972 Msa0367760:intron 50.0%
CTGAACACGTCTCCAATCAG+TGG - chr3_1:63650968-63650987 None:intergenic 50.0%
AAACACACGCTGACACAGGT+TGG - chr3_1:63650994-63651013 None:intergenic 50.0%
ACACCGACAAGACACTGACA+TGG - chr3_1:63651232-63651251 None:intergenic 50.0%
!!! GAGCCCTGTTATTTTGTGGC+TGG + chr3_1:63651396-63651415 Msa0367760:intron 50.0%
GCTGCGCCTCTGTAATACAT+GGG - chr3_1:63651602-63651621 None:intergenic 50.0%
AGCTGCGCCTCTGTAATACA+TGG - chr3_1:63651603-63651622 None:intergenic 50.0%
! CTTTTGTCTTGTGGTTGGGC+TGG + chr3_1:63652184-63652203 Msa0367760:intron 50.0%
CCACTTCTTAGCTCGTGAGA+AGG - chr3_1:63652296-63652315 None:intergenic 50.0%
CCTTCTCACGAGCTAAGAAG+TGG + chr3_1:63652293-63652312 Msa0367760:CDS 50.0%
!! TGTCTCTGGCTCTCTGTACA+TGG - chr3_1:63652693-63652712 None:intergenic 50.0%
AGGCAACCCAAACATGGTCA+TGG + chr3_1:63653019-63653038 Msa0367760:intron 50.0%
GCAAGAGCCATGACCATGTT+TGG - chr3_1:63653029-63653048 None:intergenic 50.0%
GATGCCCATTGCAGCATGAT+TGG + chr3_1:63653486-63653505 Msa0367760:intron 50.0%
ATTGGCTGCAGATTTGGCAG+AGG - chr3_1:63653651-63653670 None:intergenic 50.0%
AGAAAGCTTCCCCACTCTTC+GGG - chr3_1:63653804-63653823 None:intergenic 50.0%
ATTCAGACAACTGTGCGCCA+TGG - chr3_1:63653945-63653964 None:intergenic 50.0%
ACATAAAGCGGAAGCCTGCT+AGG - chr3_1:63654180-63654199 None:intergenic 50.0%
GTCCCACATATGTAGGCGAT+TGG - chr3_1:63654356-63654375 None:intergenic 50.0%
CAACAAGAACCATCCCTGCT+GGG - chr3_1:63654565-63654584 None:intergenic 50.0%
TCAACAAGAACCATCCCTGC+TGG - chr3_1:63654566-63654585 None:intergenic 50.0%
! CTTGTTGATAGACCTGCCGA+AGG + chr3_1:63654578-63654597 Msa0367760:CDS 50.0%
ATAGACCTGCCGAAGGATCT+AGG + chr3_1:63654585-63654604 Msa0367760:CDS 50.0%
TAGACCTGCCGAAGGATCTA+GGG + chr3_1:63654586-63654605 Msa0367760:CDS 50.0%
! GTCTTGTGGTTGGGCTGGAT+CGG + chr3_1:63652189-63652208 Msa0367760:intron 55.0%
! TCTTGTGGTTGGGCTGGATC+GGG + chr3_1:63652190-63652209 Msa0367760:intron 55.0%
GCTTGCAGGCAACCCAAACA+TGG + chr3_1:63653013-63653032 Msa0367760:intron 55.0%
TGTGTGTGTGTGTGTGTGGG+TGG + chr3_1:63653373-63653392 Msa0367760:intron 55.0%
GTGTGTGTGTGTGTGTGGGT+GGG + chr3_1:63653374-63653393 Msa0367760:intron 55.0%
TGTGTGTGTGTGTGTGGGTG+GGG + chr3_1:63653375-63653394 Msa0367760:intron 55.0%
GTGGGGGCTAGGTTTCAATC+TGG + chr3_1:63653397-63653416 Msa0367760:intron 55.0%
GGAAGCTCGTGTATATGCCG+AGG + chr3_1:63653601-63653620 Msa0367760:intron 55.0%
GGAAGCCTGCTAGGAACAGA+AGG - chr3_1:63654171-63654190 None:intergenic 55.0%
! TTTTGAGCTGGCTGAGCCCT+TGG - chr3_1:63654542-63654561 None:intergenic 55.0%
AGCCAGCTCAAAACCCAGCA+GGG + chr3_1:63654549-63654568 Msa0367760:CDS 55.0%
!!! ATCCCTGCTGGGTTTTGAGC+TGG - chr3_1:63654554-63654573 None:intergenic 55.0%
AGCTCAAAACCCAGCAGGGA+TGG + chr3_1:63654553-63654572 Msa0367760:CDS 55.0%
CGATGCAGCCCTAGATCCTT+CGG - chr3_1:63654597-63654616 None:intergenic 55.0%
TTCCTGTGTCCGACGCACGT+CGG + chr3_1:63651128-63651147 Msa0367760:intron 60.0%
AGACAGACACCGACGTGCGT+CGG - chr3_1:63651140-63651159 None:intergenic 60.0%
TGTGTGTGTGTGGGTGGGGT+GGG + chr3_1:63653379-63653398 Msa0367760:intron 60.0%
CAGCCAGCTCAAAACCCAGC+AGG + chr3_1:63654548-63654567 Msa0367760:CDS 60.0%
GTGTGTGTGTGTGGGTGGGG+TGG + chr3_1:63653378-63653397 Msa0367760:intron 65.0%
GTGTGTGTGTGGGTGGGGTG+GGG + chr3_1:63653380-63653399 Msa0367760:intron 65.0%
TGTGTGTGTGGGTGGGGTGG+GGG + chr3_1:63653381-63653400 Msa0367760:intron 65.0%
GCAGCCCTAGATCCTTCGGC+AGG - chr3_1:63654593-63654612 None:intergenic 65.0%
CACCGACGTGCGTCGGACAC+AGG - chr3_1:63651133-63651152 None:intergenic 70.0%
GTGTGGGTGGGGTGGGGGCT+AGG + chr3_1:63653386-63653405 Msa0367760:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 63649801 63654878 63649801 ID=Msa0367760;Name=Msa0367760
chr3_1 mRNA 63649801 63654878 63649801 ID=Msa0367760-mRNA-1;Parent=Msa0367760;Name=Msa0367760-mRNA-1;_AED=0.15;_eAED=0.15;_QI=230|1|1|1|1|1|7|250|200
chr3_1 exon 63649801 63650069 63649801 ID=Msa0367760-mRNA-1:exon:12555;Parent=Msa0367760-mRNA-1
chr3_1 exon 63650149 63650226 63650149 ID=Msa0367760-mRNA-1:exon:12556;Parent=Msa0367760-mRNA-1
chr3_1 exon 63651488 63651655 63651488 ID=Msa0367760-mRNA-1:exon:12557;Parent=Msa0367760-mRNA-1
chr3_1 exon 63652289 63652337 63652289 ID=Msa0367760-mRNA-1:exon:12558;Parent=Msa0367760-mRNA-1
chr3_1 exon 63653021 63653094 63653021 ID=Msa0367760-mRNA-1:exon:12559;Parent=Msa0367760-mRNA-1
chr3_1 exon 63653602 63653695 63653602 ID=Msa0367760-mRNA-1:exon:12560;Parent=Msa0367760-mRNA-1
chr3_1 exon 63654528 63654878 63654528 ID=Msa0367760-mRNA-1:exon:12561;Parent=Msa0367760-mRNA-1
chr3_1 five_prime_UTR 63649801 63650030 63649801 ID=Msa0367760-mRNA-1:five_prime_utr;Parent=Msa0367760-mRNA-1
chr3_1 CDS 63650031 63650069 63650031 ID=Msa0367760-mRNA-1:cds;Parent=Msa0367760-mRNA-1
chr3_1 CDS 63650149 63650226 63650149 ID=Msa0367760-mRNA-1:cds;Parent=Msa0367760-mRNA-1
chr3_1 CDS 63651488 63651655 63651488 ID=Msa0367760-mRNA-1:cds;Parent=Msa0367760-mRNA-1
chr3_1 CDS 63652289 63652337 63652289 ID=Msa0367760-mRNA-1:cds;Parent=Msa0367760-mRNA-1
chr3_1 CDS 63653021 63653094 63653021 ID=Msa0367760-mRNA-1:cds;Parent=Msa0367760-mRNA-1
chr3_1 CDS 63653602 63653695 63653602 ID=Msa0367760-mRNA-1:cds;Parent=Msa0367760-mRNA-1
chr3_1 CDS 63654528 63654628 63654528 ID=Msa0367760-mRNA-1:cds;Parent=Msa0367760-mRNA-1
chr3_1 three_prime_UTR 63654629 63654878 63654629 ID=Msa0367760-mRNA-1:three_prime_utr;Parent=Msa0367760-mRNA-1
Gene Sequence

>Msa0367760

ATGGCTACGATCGGACACAACAATCTCAATGCAAAATTGGTTCTTCTTGGTGATATGGGTGCTGGAAAATCTAGTCTTGTTTTAAGATTTGTCAAGGGTCAATTTCTCGAATTTCAGGAATCAACAATAGGGGCAGCATTTTTCTCTCAGACATTAGCAGTAAATGACGCAACGGTTAAATTTGAGATTTGGGACACAGCAGGACAAGAGAGATACCATAGCTTGGCTCCCATGTATTACAGAGGCGCAGCTGCTGCTATAATTGTCTATGACATCACTAGCTCAGATTCCTTCTCACGAGCTAAGAAGTGGGTCCAAGAGCTTCAAAAGCAAGGCAACCCAAACATGGTCATGGCTCTTGCTGTCAACAAATCTGACTTGGAAGATAAAAGAAAAGTGACAGCCGAAGAAGCTCGTGTATATGCCGAGGAAAATGGTTTGTTTTTCATGGAGACCTCTGCCAAATCTGCAGCCAATGTTAATGATGTATTTTATGAAATAGCTAAAAGATTACCAAGGGCTCAGCCAGCTCAAAACCCAGCAGGGATGGTTCTTGTTGATAGACCTGCCGAAGGATCTAGGGCTGCATCGTGTTGTTCATAA
Protein sequence

>Msa0367760

MATIGHNNLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFSRAKKWVQELQKQGNPNMVMALAVNKSDLEDKRKVTAEEARVYAEENGLFFMETSAKSAANVNDVFYEIAKRLPRAQPAQNPAGMVLVDRPAEGSRAASCCS*