AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0544840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544840 MtrunA17_Chr4g0025471 99.177 486 4 0 2 487 514 999 0.0 999
Msa0544840 MtrunA17_Chr2g0322121 94.057 488 26 2 3 487 508 995 0.0 879
Msa0544840 MtrunA17_Chr1g0196211 84.016 244 38 1 245 487 2 245 2.24e-143 410
Msa0544840 MtrunA17_Chr1g0190121 47.078 308 146 7 132 439 4 294 5.57e-86 267
Msa0544840 MtrunA17_Chr7g0274931 46.753 308 147 7 132 439 4 294 9.85e-86 266
Msa0544840 MtrunA17_Chr1g0186811 47.541 305 141 8 137 440 9 295 5.00e-85 265
Msa0544840 MtrunA17_Chr5g0436061 46.104 308 150 6 132 439 20 311 5.29e-85 265
Msa0544840 MtrunA17_Chr8g0387541 45.752 306 150 6 132 437 4 293 6.79e-84 261
Msa0544840 MtrunA17_Chr7g0272371 43.953 339 160 7 131 469 7 315 1.07e-83 261
Msa0544840 MtrunA17_Chr1g0167751 46.557 305 144 8 137 440 9 295 2.27e-81 255
Msa0544840 MtrunA17_Chr8g0334361 46.619 281 136 5 160 440 27 293 2.50e-81 254
Msa0544840 MtrunA17_Chr1g0196221 65.193 181 62 1 66 246 458 637 9.30e-73 242
Msa0544840 MtrunA17_Chr8g0364041 39.792 289 160 5 161 449 24 298 9.86e-64 209
Msa0544840 MtrunA17_Chr5g0415261 39.792 289 160 5 161 449 24 298 5.57e-63 207
Msa0544840 MtrunA17_Chr7g0268381 41.509 265 141 5 160 424 30 280 3.39e-62 205
Msa0544840 MtrunA17_Chr5g0445011 41.697 271 145 5 160 430 20 277 1.19e-60 201
Msa0544840 MtrunA17_Chr8g0378521 40.755 265 143 5 160 424 25 275 3.78e-60 199
Msa0544840 MtrunA17_Chr1g0165341 35.439 285 169 6 147 430 6 276 2.58e-53 181
Msa0544840 MtrunA17_Chr2g0330311 34.386 285 167 7 152 430 210 480 4.97e-44 162
Msa0544840 MtrunA17_Chr3g0097231 37.500 256 135 8 177 424 208 446 8.53e-42 155
Msa0544840 MtrunA17_Chr2g0330331 36.502 263 143 7 170 424 66 312 1.40e-39 146
Msa0544840 MtrunA17_Chr8g0369981 32.288 319 145 11 169 426 105 413 1.81e-36 140
Msa0544840 MtrunA17_Chr2g0330011 30.612 147 90 3 141 280 211 352 4.08e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544840 AT2G27210.1 93.252 489 29 2 3 487 518 1006 0.0 914
Msa0544840 AT2G27210.2 93.252 489 29 2 3 487 513 1001 0.0 914
Msa0544840 AT1G08420.2 92.464 491 32 3 2 487 523 1013 0.0 899
Msa0544840 AT1G08420.1 92.464 491 32 3 2 487 528 1018 0.0 899
Msa0544840 AT4G03080.1 75.887 423 101 1 66 487 459 881 0.0 668
Msa0544840 AT1G03445.1 58.163 392 134 3 83 474 429 790 3.73e-160 474
Msa0544840 AT1G03445.2 57.937 378 129 3 83 460 429 776 1.12e-152 454
Msa0544840 AT5G59160.3 48.515 303 141 6 137 439 17 304 6.09e-88 272
Msa0544840 AT5G59160.2 48.515 303 141 6 137 439 17 304 6.09e-88 272
Msa0544840 AT5G59160.1 48.515 303 141 6 137 439 17 304 6.09e-88 272
Msa0544840 AT2G39840.1 46.926 309 148 6 131 439 16 308 3.47e-87 270
Msa0544840 AT5G27840.2 46.319 326 156 6 128 453 8 314 1.76e-86 269
Msa0544840 AT5G27840.3 46.319 326 156 6 128 453 8 314 1.76e-86 269
Msa0544840 AT5G27840.1 47.170 318 149 6 128 445 8 306 2.64e-86 268
Msa0544840 AT5G27840.4 47.170 318 149 6 128 445 8 306 4.93e-86 268
Msa0544840 AT2G29400.1 45.779 308 152 5 132 439 18 310 5.31e-85 265
Msa0544840 AT1G64040.1 46.906 307 147 6 131 437 3 293 6.85e-85 265
Msa0544840 AT3G46820.1 45.806 310 151 7 132 440 12 305 1.76e-84 263
Msa0544840 AT3G05580.1 45.652 322 153 7 133 454 13 312 1.09e-82 259
Msa0544840 AT4G11240.1 47.842 278 131 5 160 437 30 293 1.63e-79 251
Msa0544840 AT5G43380.1 47.292 277 132 5 161 437 30 292 1.71e-78 248
Msa0544840 AT5G43380.3 47.122 278 133 5 160 437 29 292 2.59e-78 248
Msa0544840 AT5G43380.2 47.985 273 128 5 160 432 29 287 2.97e-78 248
Msa0544840 AT3G05580.2 47.287 258 117 6 133 390 13 251 7.95e-66 213
Msa0544840 AT1G69960.1 40.550 291 157 6 160 449 24 299 5.22e-64 210
Msa0544840 AT1G10430.2 39.792 289 160 5 161 449 24 298 6.82e-64 209
Msa0544840 AT1G10430.1 39.792 289 160 5 161 449 24 298 6.82e-64 209
Msa0544840 AT1G59830.1 39.446 289 161 5 161 449 24 298 1.39e-63 209
Msa0544840 AT4G26720.1 40.221 271 149 5 160 430 20 277 4.09e-62 205
Msa0544840 AT5G55260.1 41.697 271 145 5 160 430 20 277 4.31e-62 205
Msa0544840 AT3G58500.1 41.288 264 141 5 161 424 31 280 3.59e-61 203
Msa0544840 AT2G42500.1 40.909 264 142 5 161 424 31 280 1.80e-60 201
Msa0544840 AT5G55260.2 36.218 312 145 6 160 430 20 318 1.13e-53 184
Msa0544840 AT1G59830.2 41.525 236 124 5 161 396 24 245 4.97e-53 180
Msa0544840 AT3G19980.1 35.088 285 170 6 147 430 6 276 7.34e-53 181
Msa0544840 AT1G50370.1 34.737 285 171 6 147 430 6 276 1.99e-52 179
Msa0544840 AT2G42500.2 40.598 234 126 5 191 424 13 233 3.24e-50 172
Msa0544840 AT2G42810.1 37.023 262 140 8 171 424 204 448 1.01e-42 158
Msa0544840 AT2G42810.5 37.023 262 140 8 171 424 204 448 1.01e-42 158
Msa0544840 AT2G42810.4 37.023 262 140 8 171 424 204 448 1.01e-42 158
Msa0544840 AT2G42810.2 37.023 262 140 8 171 424 258 502 1.75e-42 159
Msa0544840 AT2G42810.3 37.023 262 140 8 171 424 257 501 1.81e-42 158
Msa0544840 AT2G42500.4 40.000 150 84 2 160 309 30 173 1.11e-32 123
Msa0544840 AT2G42500.3 41.549 142 77 2 160 301 30 165 9.27e-32 120
Msa0544840 AT5G63870.1 28.955 335 171 11 149 426 37 361 1.11e-31 126
Msa0544840 AT5G63870.2 28.955 335 171 11 149 426 37 361 1.11e-31 126
Msa0544840 AT2G42500.5 41.259 143 78 2 160 302 30 166 1.25e-31 120
Msa0544840 AT1G48120.1 29.283 321 161 11 149 413 615 925 2.27e-27 117
Msa0544840 AT5G63870.3 29.044 272 147 8 149 384 37 298 5.12e-27 110
Msa0544840 AT5G10900.3 27.151 372 214 14 124 456 159 512 7.38e-24 105
Msa0544840 AT5G10900.1 28.070 342 194 13 124 426 159 487 8.96e-24 105
Msa0544840 AT5G10900.2 28.070 342 194 13 124 426 159 487 9.36e-24 105

Find 190 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGCAGCAGTTGCACTTTC+TGG 0.074910 4_1:-33886504 None:intergenic
AGGGCACCAATTAAAATATT+TGG 0.147759 4_1:+33887272 Msa0544840:CDS
AGAGACAAATATACCTTCTT+TGG 0.185188 4_1:-33886564 None:intergenic
AGCCTGATTCCACCAGAATT+TGG 0.192994 4_1:-33886275 None:intergenic
GGATAAACCGTCTGTTTAAT+TGG 0.210498 4_1:+33888359 Msa0544840:CDS
GTGATTTACATGGGCAGTTT+GGG 0.211414 4_1:+33887294 Msa0544840:CDS
ACCTCATTGCATAAACATTA+AGG 0.216649 4_1:-33890682 None:intergenic
GGTCCAGGGTTAGTTACTTT+TGG 0.218224 4_1:+33888666 Msa0544840:CDS
TGACGTTCTGGTGAAGTTTC+TGG 0.231673 4_1:-33890342 None:intergenic
TGCTGGGGCGATATTAGTTT+TGG 0.237880 4_1:+33890263 Msa0544840:CDS
GATCCTGCTTCCATTGTAAT+AGG 0.263911 4_1:-33888481 None:intergenic
GAATTTGGGCCTCCAGATTC+AGG 0.267505 4_1:-33886260 None:intergenic
ACTCAATTCGAAAACCAAAA+AGG 0.280052 4_1:-33888205 None:intergenic
AAGTCTTCTGCTTGCTTTGA+AGG 0.285629 4_1:+33888035 Msa0544840:CDS
CTCGCATACCCATGGGAAAA+TGG 0.290739 4_1:-33890754 None:intergenic
ATGCGCCTCTTTGACGAGTA+TGG 0.303119 4_1:+33887323 Msa0544840:CDS
GATATATGAGAAATCTTTCT+TGG 0.303390 4_1:+33891144 Msa0544840:three_prime_UTR
GGTGATTTACATGGGCAGTT+TGG 0.308128 4_1:+33887293 Msa0544840:CDS
GCCTGATTCCACCAGAATTT+GGG 0.308521 4_1:-33886274 None:intergenic
CGTATTAAATGAATATTGTT+TGG 0.311742 4_1:-33888152 None:intergenic
GCAATAACAAATAAAGAAAA+AGG 0.320194 4_1:-33891325 None:intergenic
GAATCTGGAGGCCCAAATTC+TGG 0.332172 4_1:+33886263 Msa0544840:CDS
GCAGAAGACTTATAGTTTCC+AGG 0.339335 4_1:-33888023 None:intergenic
TTCATGATTAAACCTGAATC+TGG 0.351678 4_1:+33886248 Msa0544840:CDS
CCTTGTGCAGCAAAGAGCTT+GGG 0.358853 4_1:+33891287 Msa0544840:three_prime_UTR
CATTAATATCTGCAGCTTCA+TGG 0.365494 4_1:-33888181 None:intergenic
CAAAGCTAGAAGATGCAGTT+AGG 0.370628 4_1:+33890918 Msa0544840:three_prime_UTR
TCCATTCTCTTGCCGTGCCT+TGG 0.370864 4_1:-33886162 None:intergenic
CTCGAATGTGTATCTTCTAA+AGG 0.371485 4_1:-33890849 None:intergenic
TCCTAGGAGATTATGTTGAT+AGG 0.374773 4_1:+33887989 Msa0544840:CDS
AGGGTGAGAGAGATGGAATT+TGG 0.383284 4_1:+33888326 Msa0544840:intron
GGTAATGGATGAATCAGTTT+AGG 0.384582 4_1:-33890306 None:intergenic
AACTGGTGGTTTCCAGCCAC+GGG 0.386044 4_1:-33887156 None:intergenic
GAGACAAATATACCTTCTTT+GGG 0.386185 4_1:-33886563 None:intergenic
TCCTTGTGCAGCAAAGAGCT+TGG 0.387203 4_1:+33891286 Msa0544840:three_prime_UTR
CACAACAACACCTATGATAC+AGG 0.390894 4_1:-33891172 None:intergenic
GCAGAGACTGGTGGAGCATT+AGG 0.392732 4_1:+33886414 Msa0544840:CDS
GAAGGCAGACGGGTCAGTTA+TGG 0.394505 4_1:+33886477 Msa0544840:CDS
GTATCTTCAATATGACGTTC+TGG 0.399853 4_1:-33890354 None:intergenic
TAGCAAAGGAGTTGAGTATC+TGG 0.402168 4_1:+33886088 Msa0544840:CDS
GCCCAAATTCTGGTGGAATC+AGG 0.409039 4_1:+33886273 Msa0544840:CDS
TCGAATGTGTATCTTCTAAA+GGG 0.412014 4_1:-33890848 None:intergenic
AAGGCAGACGGGTCAGTTAT+GGG 0.415806 4_1:+33886478 Msa0544840:CDS
ATGACCGTGGTTCGCTGGCT+TGG 0.419614 4_1:+33890637 Msa0544840:CDS
ACAAAATCACAAGGACCAAT+GGG 0.421276 4_1:+33891079 Msa0544840:three_prime_UTR
ATTGATCAGTTTGAAAATGA+AGG 0.423462 4_1:+33886459 Msa0544840:CDS
CCTAGGAGATTATGTTGATA+GGG 0.424523 4_1:+33887990 Msa0544840:CDS
ACCTCTTAAAACCCCGTGGC+TGG 0.426692 4_1:+33887144 Msa0544840:CDS
TGTACATAACACCGAAGTTC+AGG 0.429340 4_1:-33890721 None:intergenic
ATATATGAGAAATCTTTCTT+GGG 0.430869 4_1:+33891145 Msa0544840:three_prime_UTR
GCCAAGGCACGGCAAGAGAA+TGG 0.432499 4_1:+33886161 Msa0544840:CDS
CAAAATTCCATTACACGGTC+AGG 0.433952 4_1:-33890028 None:intergenic
CGACCGAATGCTAGAGGTCC+AGG 0.435844 4_1:+33888651 Msa0544840:CDS
GAGCATTAGGTGGCATGGTT+AGG 0.435993 4_1:+33886427 Msa0544840:CDS
AATTAAACAGACGGTTTATC+CGG 0.436643 4_1:-33888357 None:intergenic
AAGATCATGGTTCTGTATCA+TGG 0.438918 4_1:+33890982 Msa0544840:three_prime_UTR
AAAATATTTGGTGATTTACA+TGG 0.439355 4_1:+33887284 Msa0544840:CDS
TCAGCCCCACGGTCCCGATC+AGG 0.440492 4_1:-33886197 None:intergenic
GTGGTTATTGCCGCAGAGAC+TGG 0.443202 4_1:+33886402 Msa0544840:CDS
AATAGTTTGTAGCTGAGAAA+AGG 0.445366 4_1:-33890138 None:intergenic
CCTCATTGCATAAACATTAA+GGG 0.447324 4_1:-33890681 None:intergenic
GCTATATCACCGGCAGTTGA+TGG 0.459620 4_1:-33887350 None:intergenic
GGTGAAAGTGCAGGTGGTAA+TGG 0.462912 4_1:-33890321 None:intergenic
GTTCCAAGTGATTTATTGAC+CGG 0.463912 4_1:-33888438 None:intergenic
CTGTATGACAGTTGGTTCGC+TGG 0.466427 4_1:-33887246 None:intergenic
CACTGGCTGCTGCCAAGGCA+CGG 0.473002 4_1:+33886150 Msa0544840:CDS
TGATCGGGACCGTGGGGCTG+AGG 0.474950 4_1:+33886199 Msa0544840:CDS
TACAAAATCACAAGGACCAA+TGG 0.475059 4_1:+33891078 Msa0544840:three_prime_UTR
CCTGATGACTTTCACAGTGC+TGG 0.476899 4_1:+33890804 Msa0544840:three_prime_UTR
AACCAACTGTCATACAGCTT+AGG 0.477320 4_1:+33887252 Msa0544840:CDS
CCCTTAATGTTTATGCAATG+AGG 0.477882 4_1:+33890681 Msa0544840:three_prime_UTR
AGCAAATGACCGTGGTTCGC+TGG 0.482727 4_1:+33890632 Msa0544840:CDS
TATATCGATTATCTATTCCT+AGG 0.483370 4_1:+33887973 Msa0544840:CDS
TGCCACACTGGCTGCTGCCA+AGG 0.487318 4_1:+33886145 Msa0544840:CDS
ACCAATGGCTCATTTACAAT+GGG 0.487729 4_1:-33890951 None:intergenic
ATAGGTACTGCAAATAATGC+TGG 0.489726 4_1:+33890246 Msa0544840:intron
TGATAGGGGCCAACACAGCC+TGG 0.491899 4_1:+33888005 Msa0544840:CDS
TATTCAGCGTCCTATTACAA+TGG 0.492739 4_1:+33888471 Msa0544840:CDS
ATGTTTATGCAATGAGGTTG+TGG 0.498266 4_1:+33890687 Msa0544840:three_prime_UTR
AAGATATTTGTTTCCCACTA+GGG 0.499125 4_1:-33886226 None:intergenic
TTGGTACAAAATCAAGATCA+TGG 0.501257 4_1:+33890969 Msa0544840:three_prime_UTR
AACCCTGGACCTCTAGCATT+CGG 0.502808 4_1:-33888654 None:intergenic
CCCAAGCTCTTTGCTGCACA+AGG 0.504356 4_1:-33891287 None:intergenic
CCCTATCAACATAATCTCCT+AGG 0.508047 4_1:-33887990 None:intergenic
AGGAGTTGAATCACCTGATC+GGG 0.508379 4_1:+33886184 Msa0544840:CDS
CCAGCACTGTGAAAGTCATC+AGG 0.512434 4_1:-33890804 None:intergenic
CGACCTCTAGTTGGTGTTGG+TGG 0.514229 4_1:-33890600 None:intergenic
ACCAACTGTCATACAGCTTA+GGG 0.516291 4_1:+33887253 Msa0544840:CDS
GTATCATGGATTGTTAGTGT+TGG 0.517161 4_1:+33890996 Msa0544840:three_prime_UTR
AATTGAGTGCATTGAGAGGA+TGG 0.519249 4_1:+33888220 Msa0544840:CDS
AAAGCTAGAAGATGCAGTTA+GGG 0.523630 4_1:+33890919 Msa0544840:three_prime_UTR
GAACTGGTGGTTTCCAGCCA+CGG 0.524769 4_1:-33887157 None:intergenic
TACCAATGGCTCATTTACAA+TGG 0.528285 4_1:-33890952 None:intergenic
TAGGTACTGCAAATAATGCT+GGG 0.528832 4_1:+33890247 Msa0544840:intron
TATCAATAGTGTCCCAAAGA+AGG 0.529780 4_1:+33886551 Msa0544840:CDS
AAAGATATTTGTTTCCCACT+AGG 0.531546 4_1:-33886227 None:intergenic
AATCACCTGATCGGGACCGT+GGG 0.533321 4_1:+33886192 Msa0544840:CDS
GGGGCTGAGGCTACCCCTAG+TGG 0.534590 4_1:+33886212 Msa0544840:CDS
ACAGAGAATGACAGCGTGGA+AGG 0.535847 4_1:+33888624 Msa0544840:CDS
ACCCATTGTAAATGAGCCAT+TGG 0.536278 4_1:+33890950 Msa0544840:three_prime_UTR
CTTTCTGATCTTTAATACTG+TGG 0.537043 4_1:+33890777 Msa0544840:three_prime_UTR
TTTGTAAAAGAATGATAACA+TGG 0.537971 4_1:-33891061 None:intergenic
AGCAGGATCAATTGTGCTGA+TGG 0.539249 4_1:+33888495 Msa0544840:CDS
CGTCCTATTACAATGGAAGC+AGG 0.541503 4_1:+33888478 Msa0544840:CDS
ATAGTTTGTAGCTGAGAAAA+GGG 0.542289 4_1:-33890137 None:intergenic
TTATAGTTTCCAGGCTGTGT+TGG 0.545135 4_1:-33888014 None:intergenic
GAAGCAAGGTCGGTACCTGC+TGG 0.545820 4_1:+33890871 Msa0544840:three_prime_UTR
TATTGAAGATACCTGGATGC+AGG 0.546581 4_1:+33890365 Msa0544840:CDS
ATGGAATTTGGACATGGCAC+CGG 0.546940 4_1:+33888338 Msa0544840:CDS
GCCCTAAGCTGTATGACAGT+TGG 0.553062 4_1:-33887254 None:intergenic
AGCTTTGTATGAGTAGTGTA+CGG 0.553323 4_1:-33890902 None:intergenic
TGATTTACATGGGCAGTTTG+GGG 0.553499 4_1:+33887295 Msa0544840:CDS
GTTGCAGCCTGACCGTGTAA+TGG 0.556995 4_1:+33890021 Msa0544840:intron
TCTGCTCAGGGTGAGAGAGA+TGG 0.558214 4_1:+33888319 Msa0544840:intron
TTGTAAAAGAATGATAACAT+GGG 0.559128 4_1:-33891060 None:intergenic
TTTGGGTAGGGATCTTGTGG+TGG 0.559437 4_1:+33890281 Msa0544840:CDS
ACCCCAAAAGTAACTAACCC+TGG 0.560640 4_1:-33888669 None:intergenic
GAACCACGGTCATTTGCTAC+AGG 0.562198 4_1:-33890627 None:intergenic
TCAGAAAGCTCGCATACCCA+TGG 0.562248 4_1:-33890762 None:intergenic
TGCCTTGGCAGCAGCCAGTG+TGG 0.565287 4_1:-33886147 None:intergenic
TTGTGCTATCGCCTGAACTT+CGG 0.565403 4_1:+33890710 Msa0544840:three_prime_UTR
CAAAATTCACATCTCTGTGT+CGG 0.567328 4_1:-33891243 None:intergenic
AACGTCATATTGAAGATACC+TGG 0.568523 4_1:+33890358 Msa0544840:CDS
TTGACGGAATACCTGCATCC+AGG 0.569460 4_1:-33890376 None:intergenic
GTTTGAAAATGAAGGCAGAC+GGG 0.571368 4_1:+33886467 Msa0544840:CDS
TGGCCGGTCAATAAATCACT+TGG 0.574069 4_1:+33888435 Msa0544840:CDS
CTTGTGCAGCAAAGAGCTTG+GGG 0.576749 4_1:+33891288 Msa0544840:three_prime_UTR
TGGTGGAGCATTAGGTGGCA+TGG 0.578886 4_1:+33886422 Msa0544840:CDS
AATGGCTCATTTACAATGGG+TGG 0.580955 4_1:-33890948 None:intergenic
GAGGAGTTGAATCACCTGAT+CGG 0.581652 4_1:+33886183 Msa0544840:CDS
GCTCATTTACAATGGGTGGA+TGG 0.583680 4_1:-33890944 None:intergenic
CTGCTAGAAAGTTATTAGAT+CGG 0.583835 4_1:+33886520 Msa0544840:CDS
GGGCTGAGGCTACCCCTAGT+GGG 0.585238 4_1:+33886213 Msa0544840:CDS
AAATATTTGGTGATTTACAT+GGG 0.589386 4_1:+33887285 Msa0544840:CDS
AACAATATTCATTTAATACG+TGG 0.589704 4_1:+33888155 Msa0544840:CDS
TATTGCAAAATTCCATTACA+CGG 0.589836 4_1:-33890033 None:intergenic
GCTGGAAACCACCAGTTCGA+CGG 0.590734 4_1:+33887162 Msa0544840:CDS
TATATGAGAAATCTTTCTTG+GGG 0.591264 4_1:+33891146 Msa0544840:three_prime_UTR
GAAGTTTCTGGTGAAAGTGC+AGG 0.592800 4_1:-33890330 None:intergenic
TTCTCAGCTACAAACTATTG+CGG 0.593117 4_1:+33890142 Msa0544840:CDS
TAGGGGTAGCCTCAGCCCCA+CGG 0.594389 4_1:-33886208 None:intergenic
CTAGGAGATTATGTTGATAG+GGG 0.594858 4_1:+33887991 Msa0544840:CDS
GAATCACCTGATCGGGACCG+TGG 0.597024 4_1:+33886191 Msa0544840:CDS
GAGGAAGCCAATTAAACAGA+CGG 0.597244 4_1:-33888366 None:intergenic
ACAGGAGGACGACCTCTAGT+TGG 0.601390 4_1:-33890609 None:intergenic
CAGAGAATGACAGCGTGGAA+GGG 0.602329 4_1:+33888625 Msa0544840:CDS
GGACGACCTCTAGTTGGTGT+TGG 0.603208 4_1:-33890603 None:intergenic
TTCTCAATTAGAGCTGCAAG+AGG 0.604614 4_1:-33888385 None:intergenic
AGTTTGAAAATGAAGGCAGA+CGG 0.607904 4_1:+33886466 Msa0544840:CDS
TGTAAAAGAATGATAACATG+GGG 0.609710 4_1:-33891059 None:intergenic
GTTATTGCCGCAGAGACTGG+TGG 0.610143 4_1:+33886405 Msa0544840:CDS
GACCGAATGCTAGAGGTCCA+GGG 0.611385 4_1:+33888652 Msa0544840:CDS
TCCACGCTGTCATTCTCTGT+AGG 0.611873 4_1:-33888621 None:intergenic
TTCGAATTGAGTGCATTGAG+AGG 0.613732 4_1:+33888216 Msa0544840:CDS
TTGTGCAGCAAAGAGCTTGG+GGG 0.613811 4_1:+33891289 Msa0544840:three_prime_UTR
CAGAAAGCTCGCATACCCAT+GGG 0.614805 4_1:-33890761 None:intergenic
TATGGTTCACCATCAACTGC+CGG 0.615823 4_1:+33887341 Msa0544840:CDS
ATGATTAAACCTGAATCTGG+AGG 0.621621 4_1:+33886251 Msa0544840:CDS
TGAAGCTATCAGTGCCACAC+TGG 0.621819 4_1:+33886133 Msa0544840:CDS
AGATATTTGTTTCCCACTAG+GGG 0.622612 4_1:-33886225 None:intergenic
GCACATGAATGCGTGATGGA+TGG 0.624035 4_1:+33890082 Msa0544840:CDS
GGGCTGCGACCGAATGCTAG+AGG 0.627867 4_1:+33888645 Msa0544840:CDS
TGTACGGTGTACCTACCAGC+AGG 0.628783 4_1:-33890886 None:intergenic
AGGAACTTACGCTATATCAC+CGG 0.628831 4_1:-33887360 None:intergenic
AGATACACATTCGAGAAGCA+AGG 0.634639 4_1:+33890857 Msa0544840:three_prime_UTR
GAGACTGGTGGAGCATTAGG+TGG 0.638450 4_1:+33886417 Msa0544840:CDS
ACAACAACACCTATGATACA+GGG 0.647653 4_1:-33891171 None:intergenic
GTGAACCATACTCGTCAAAG+AGG 0.650621 4_1:-33887328 None:intergenic
TTGAACAGGAGAACTAGCAA+AGG 0.651766 4_1:+33886074 Msa0544840:CDS
CAAGGTCGGTACCTGCTGGT+AGG 0.657887 4_1:+33890875 Msa0544840:three_prime_UTR
TCTGGAGGCCCAAATTCTGG+TGG 0.658527 4_1:+33886266 Msa0544840:CDS
AGAGAGATGGAATTTGGACA+TGG 0.659611 4_1:+33888332 Msa0544840:CDS
TCGTGCACATGAATGCGTGA+TGG 0.660261 4_1:+33890078 Msa0544840:CDS
ACACATTCGAGAAGCAAGGT+CGG 0.662556 4_1:+33890861 Msa0544840:three_prime_UTR
CCACGGTCATTTGCTACAGG+AGG 0.670379 4_1:-33890624 None:intergenic
AAGGCACGGCAAGAGAATGG+AGG 0.674733 4_1:+33886164 Msa0544840:CDS
ATCACCTGATCGGGACCGTG+GGG 0.676953 4_1:+33886193 Msa0544840:CDS
ACTGGTGGTTTCCAGCCACG+GGG 0.683656 4_1:-33887155 None:intergenic
AGGTACTGCAAATAATGCTG+GGG 0.686484 4_1:+33890248 Msa0544840:intron
ATATGAGAAATCTTTCTTGG+GGG 0.687460 4_1:+33891147 Msa0544840:three_prime_UTR
AAAATTATTTGCATGCATGG+GGG 0.687635 4_1:+33888409 Msa0544840:CDS
AGACCACCAACACCAACTAG+AGG 0.692917 4_1:+33890597 Msa0544840:CDS
CAAAATCACAAGGACCAATG+GGG 0.694042 4_1:+33891080 Msa0544840:three_prime_UTR
ATATCCAAGCCAGCGAACCA+CGG 0.706438 4_1:-33890641 None:intergenic
GTTTCTGGTGAAAGTGCAGG+TGG 0.723089 4_1:-33890327 None:intergenic
CCTCCTGTAGCAAATGACCG+TGG 0.727849 4_1:+33890624 Msa0544840:CDS
ATCTTTGTGATAGTGCAGAG+AGG 0.731261 4_1:+33887216 Msa0544840:CDS
GCACACCTCTTAAAACCCCG+TGG 0.733416 4_1:+33887140 Msa0544840:CDS
TAATGCTCCACCAGTCTCTG+CGG 0.733520 4_1:-33886412 None:intergenic
TCCTACAGAGAATGACAGCG+TGG 0.743451 4_1:+33888620 Msa0544840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTATAAATAATTTTTTTTG+GGG + chr4_1:33890547-33890566 Msa0544840:intron 10.0%
!!! TAGTAAATTTTGATTACTAA+GGG + chr4_1:33886316-33886335 Msa0544840:intron 15.0%
!! GATCAAAATTAATTTCTATT+AGG + chr4_1:33886752-33886771 Msa0544840:intron 15.0%
!!! AAATCACCAAATATTTTAAT+TGG - chr4_1:33887281-33887300 None:intergenic 15.0%
!! TAAATAGATATTACATATGA+TGG + chr4_1:33888767-33888786 Msa0544840:intron 15.0%
!!! TTATTTTCCCTATTAAATTT+TGG + chr4_1:33890212-33890231 Msa0544840:intron 15.0%
!!! GTAGTAAATTTTGATTACTA+AGG + chr4_1:33886315-33886334 Msa0544840:intron 20.0%
!! TTCATTTAATAGTTAAGCAA+TGG + chr4_1:33886789-33886808 Msa0544840:intron 20.0%
!!! AAAATATTTGGTGATTTACA+TGG + chr4_1:33887284-33887303 Msa0544840:CDS 20.0%
!!! AAATATTTGGTGATTTACAT+GGG + chr4_1:33887285-33887304 Msa0544840:CDS 20.0%
!! AAATTAGCAAGAGAAAAAAT+TGG - chr4_1:33887934-33887953 None:intergenic 20.0%
!! CGTATTAAATGAATATTGTT+TGG - chr4_1:33888155-33888174 None:intergenic 20.0%
!! AACAATATTCATTTAATACG+TGG + chr4_1:33888155-33888174 Msa0544840:CDS 20.0%
!!! ATACATGGTAAAACATTTTA+TGG + chr4_1:33888273-33888292 Msa0544840:intron 20.0%
!! AAAAAAATTATTTGCATGCA+TGG + chr4_1:33888406-33888425 Msa0544840:CDS 20.0%
!! AAAAAATTATTTGCATGCAT+GGG + chr4_1:33888407-33888426 Msa0544840:CDS 20.0%
!! ATCTATTTATATCATTATCC+AGG - chr4_1:33888756-33888775 None:intergenic 20.0%
!!! ATTTATTCACCCTATTTTTT+TGG - chr4_1:33889297-33889316 None:intergenic 20.0%
!! TGAATAAATAGAAGATAAAC+TGG + chr4_1:33889308-33889327 Msa0544840:intron 20.0%
!! GAATAAATAGAAGATAAACT+GGG + chr4_1:33889309-33889328 Msa0544840:intron 20.0%
!! ACAATCATTAATATATGACA+AGG - chr4_1:33889906-33889925 None:intergenic 20.0%
!! TTAAATTTGTGCTATATAAG+AGG + chr4_1:33889939-33889958 Msa0544840:intron 20.0%
!!! ATAACATTTTGATATCAGAA+AGG - chr4_1:33889996-33890015 None:intergenic 20.0%
!! TTAATAGGGAAAATAATTGA+AGG - chr4_1:33890208-33890227 None:intergenic 20.0%
!! TTGTAAAAGAATGATAACAT+GGG - chr4_1:33891063-33891082 None:intergenic 20.0%
!! TTTGTAAAAGAATGATAACA+TGG - chr4_1:33891064-33891083 None:intergenic 20.0%
!! AAAAAATATTATAACCCCAT+TGG - chr4_1:33891097-33891116 None:intergenic 20.0%
!! ATATATGAGAAATCTTTCTT+GGG + chr4_1:33891145-33891164 Msa0544840:three_prime_UTR 20.0%
!! GCAATAACAAATAAAGAAAA+AGG - chr4_1:33891328-33891347 None:intergenic 20.0%
!! TATTCAAGTACATTTTTGTC+TGG + chr4_1:33886367-33886386 Msa0544840:intron 25.0%
! ATTGATCAGTTTGAAAATGA+AGG + chr4_1:33886459-33886478 Msa0544840:CDS 25.0%
! ATGATAAACACTATTAGAGA+GGG - chr4_1:33886691-33886710 None:intergenic 25.0%
! AATGATAAACACTATTAGAG+AGG - chr4_1:33886692-33886711 None:intergenic 25.0%
! ATAATGTGAAAACACATGAT+TGG + chr4_1:33886727-33886746 Msa0544840:intron 25.0%
! TAATGTGAAAACACATGATT+GGG + chr4_1:33886728-33886747 Msa0544840:intron 25.0%
! TTTATTGAATTCATCAAGCT+TGG + chr4_1:33887058-33887077 Msa0544840:intron 25.0%
! ACTTATATAAAACCATCCAT+GGG - chr4_1:33887391-33887410 None:intergenic 25.0%
! TACTTATATAAAACCATCCA+TGG - chr4_1:33887392-33887411 None:intergenic 25.0%
!!! GGATGGTTTTATATAAGTAA+TGG + chr4_1:33887393-33887412 Msa0544840:intron 25.0%
!!! TAAGTAATGGATAGTTACTT+TGG + chr4_1:33887406-33887425 Msa0544840:intron 25.0%
!!! AAGTAATGGATAGTTACTTT+GGG + chr4_1:33887407-33887426 Msa0544840:intron 25.0%
! TTGTCTATTTGTAGCTTAAA+AGG + chr4_1:33887450-33887469 Msa0544840:intron 25.0%
! CATATTACCAAATAACCTAT+TGG - chr4_1:33887476-33887495 None:intergenic 25.0%
! ATATCATAGTATTCCATGAT+GGG - chr4_1:33887677-33887696 None:intergenic 25.0%
! TATATCATAGTATTCCATGA+TGG - chr4_1:33887678-33887697 None:intergenic 25.0%
!! TATATCGATTATCTATTCCT+AGG + chr4_1:33887973-33887992 Msa0544840:CDS 25.0%
! TATGATTATGTGAAATTTGC+AGG + chr4_1:33888121-33888140 Msa0544840:intron 25.0%
!! ATGGGAAAACATTTTATACA+TGG + chr4_1:33888258-33888277 Msa0544840:intron 25.0%
! AAAAATTATTTGCATGCATG+GGG + chr4_1:33888408-33888427 Msa0544840:CDS 25.0%
! AAAAAGATTGCAAACGATTT+AGG - chr4_1:33888958-33888977 None:intergenic 25.0%
!!! ATTTTTTTGGTATTAACCCA+AGG - chr4_1:33889284-33889303 None:intergenic 25.0%
! TGGGTTAATACCAAAAAAAT+AGG + chr4_1:33889284-33889303 Msa0544840:intron 25.0%
! GGGTTAATACCAAAAAAATA+GGG + chr4_1:33889285-33889304 Msa0544840:intron 25.0%
! TCTGAAAACAAGTATATAAG+TGG + chr4_1:33889599-33889618 Msa0544840:intron 25.0%
! CTGAAAACAAGTATATAAGT+GGG + chr4_1:33889600-33889619 Msa0544840:intron 25.0%
! TACCATCTTAAAATTTGGTT+GGG - chr4_1:33889672-33889691 None:intergenic 25.0%
! ATACCATCTTAAAATTTGGT+TGG - chr4_1:33889673-33889692 None:intergenic 25.0%
! TCTCATACCATCTTAAAATT+TGG - chr4_1:33889677-33889696 None:intergenic 25.0%
! AAAGGGAATCTTAAAATTAG+AGG - chr4_1:33889847-33889866 None:intergenic 25.0%
!!! TTTAAGATTCCCTTTTATGA+TGG + chr4_1:33889852-33889871 Msa0544840:intron 25.0%
! ACATTACATCCATCATAAAA+GGG - chr4_1:33889864-33889883 None:intergenic 25.0%
! AACATTACATCCATCATAAA+AGG - chr4_1:33889865-33889884 None:intergenic 25.0%
!!! TAATGTTTGTTGTTAGTTAC+AGG + chr4_1:33889878-33889897 Msa0544840:intron 25.0%
! TATTGCAAAATTCCATTACA+CGG - chr4_1:33890036-33890055 None:intergenic 25.0%
! ACACATGCCAAAATTTAATA+GGG - chr4_1:33890222-33890241 None:intergenic 25.0%
!!! TATTAAATTTTGGCATGTGT+GGG + chr4_1:33890222-33890241 Msa0544840:intron 25.0%
!! TTTATAAAATGGTTTGCAGT+TGG + chr4_1:33890406-33890425 Msa0544840:intron 25.0%
! TGTAAAAGAATGATAACATG+GGG - chr4_1:33891062-33891081 None:intergenic 25.0%
!! CATTCTTTTACAAAATCACA+AGG + chr4_1:33891070-33891089 Msa0544840:three_prime_UTR 25.0%
!! CTTTTTCTTTCTTTTTGTGA+TGG + chr4_1:33891118-33891137 Msa0544840:three_prime_UTR 25.0%
! GATATATGAGAAATCTTTCT+TGG + chr4_1:33891144-33891163 Msa0544840:three_prime_UTR 25.0%
! TATATGAGAAATCTTTCTTG+GGG + chr4_1:33891146-33891165 Msa0544840:three_prime_UTR 25.0%
AAGATATTTGTTTCCCACTA+GGG - chr4_1:33886229-33886248 None:intergenic 30.0%
AAAGATATTTGTTTCCCACT+AGG - chr4_1:33886230-33886249 None:intergenic 30.0%
TTCATGATTAAACCTGAATC+TGG + chr4_1:33886248-33886267 Msa0544840:CDS 30.0%
CTGCTAGAAAGTTATTAGAT+CGG + chr4_1:33886520-33886539 Msa0544840:CDS 30.0%
GAGACAAATATACCTTCTTT+GGG - chr4_1:33886566-33886585 None:intergenic 30.0%
AGAGACAAATATACCTTCTT+TGG - chr4_1:33886567-33886586 None:intergenic 30.0%
ATCAGATGCATTATTCTGAT+TGG + chr4_1:33886812-33886831 Msa0544840:intron 30.0%
AATGCTGACATTTCCTTTAA+TGG + chr4_1:33886857-33886876 Msa0544840:intron 30.0%
AGGTATGAAAAACTCAACAT+CGG - chr4_1:33887010-33887029 None:intergenic 30.0%
GAGAAGTGATTCAACAAAAT+AGG - chr4_1:33887030-33887049 None:intergenic 30.0%
AGTTTCTTAACCTTCTATGT+AGG + chr4_1:33887112-33887131 Msa0544840:intron 30.0%
! AGGGCACCAATTAAAATATT+TGG + chr4_1:33887272-33887291 Msa0544840:CDS 30.0%
TAAAAGGCCAATAGGTTATT+TGG + chr4_1:33887466-33887485 Msa0544840:intron 30.0%
AAGACAAGAATCAGTTAGAT+TGG - chr4_1:33887592-33887611 None:intergenic 30.0%
! ATTGTAATCTATCGACTATC+AGG + chr4_1:33887615-33887634 Msa0544840:intron 30.0%
TGTTTACATTGTGCTTTGAT+TGG + chr4_1:33887725-33887744 Msa0544840:intron 30.0%
GTTTACATTGTGCTTTGATT+GGG + chr4_1:33887726-33887745 Msa0544840:intron 30.0%
GTATTGCTTATCAAGTTTGA+TGG + chr4_1:33888085-33888104 Msa0544840:intron 30.0%
CTCAATTCGAAAACCAAAAA+GGG - chr4_1:33888207-33888226 None:intergenic 30.0%
ACTCAATTCGAAAACCAAAA+AGG - chr4_1:33888208-33888227 None:intergenic 30.0%
ATGGTAAGGAATTTCATACA+TGG + chr4_1:33888239-33888258 Msa0544840:intron 30.0%
TGGTAAGGAATTTCATACAT+GGG + chr4_1:33888240-33888259 Msa0544840:intron 30.0%
AATTAAACAGACGGTTTATC+CGG - chr4_1:33888360-33888379 None:intergenic 30.0%
AAAATTATTTGCATGCATGG+GGG + chr4_1:33888409-33888428 Msa0544840:CDS 30.0%
TCATGCTGTCATTCTTAAAA+AGG - chr4_1:33888581-33888600 None:intergenic 30.0%
TTAAGAATGACAGCATGAAA+CGG + chr4_1:33888583-33888602 Msa0544840:intron 30.0%
TCTCTAGTGTCAATTTAGAT+GGG - chr4_1:33889002-33889021 None:intergenic 30.0%
GTTAATCGTTTGCAATCTTA+AGG + chr4_1:33889096-33889115 Msa0544840:intron 30.0%
! TTATATTTGAAGCCATGCTT+TGG + chr4_1:33889135-33889154 Msa0544840:intron 30.0%
AGAATAAATAGAATCCTGAC+TGG + chr4_1:33889196-33889215 Msa0544840:intron 30.0%
!! ATAGTGTTGGTGGATAATAT+TGG - chr4_1:33889491-33889510 None:intergenic 30.0%
CATGTCTTTATACATAGTGT+TGG - chr4_1:33889504-33889523 None:intergenic 30.0%
AAAACAAGTATATAAGTGGG+AGG + chr4_1:33889603-33889622 Msa0544840:intron 30.0%
!! TAGTACAACTCTTTGAAGTT+GGG - chr4_1:33889758-33889777 None:intergenic 30.0%
TTAGAGGAAATATCAAATGC+TGG - chr4_1:33889831-33889850 None:intergenic 30.0%
GGTTAAACTTGTGTATATTG+TGG + chr4_1:33889960-33889979 Msa0544840:intron 30.0%
TAAACTTGTGTATATTGTGG+CGG + chr4_1:33889963-33889982 Msa0544840:intron 30.0%
! ATAGTTTGTAGCTGAGAAAA+GGG - chr4_1:33890140-33890159 None:intergenic 30.0%
! AATAGTTTGTAGCTGAGAAA+AGG - chr4_1:33890141-33890160 None:intergenic 30.0%
CACACATGCCAAAATTTAAT+AGG - chr4_1:33890223-33890242 None:intergenic 30.0%
!! CTATTAAATTTTGGCATGTG+TGG + chr4_1:33890221-33890240 Msa0544840:intron 30.0%
! AATTTTAAGCAGCACTAAGA+GGG - chr4_1:33890434-33890453 None:intergenic 30.0%
TGTGCATGTGTATATTTGAT+AGG - chr4_1:33890460-33890479 None:intergenic 30.0%
CTGATCTATTGCAAAATACT+AGG + chr4_1:33890497-33890516 Msa0544840:intron 30.0%
CTATTGCAAAATACTAGGAT+TGG + chr4_1:33890502-33890521 Msa0544840:intron 30.0%
CCTCATTGCATAAACATTAA+GGG - chr4_1:33890684-33890703 None:intergenic 30.0%
ACCTCATTGCATAAACATTA+AGG - chr4_1:33890685-33890704 None:intergenic 30.0%
CTTTCTGATCTTTAATACTG+TGG + chr4_1:33890777-33890796 Msa0544840:three_prime_UTR 30.0%
TCGAATGTGTATCTTCTAAA+GGG - chr4_1:33890851-33890870 None:intergenic 30.0%
! TGATCTTGATTTTGTACCAA+TGG - chr4_1:33890969-33890988 None:intergenic 30.0%
TTGGTACAAAATCAAGATCA+TGG + chr4_1:33890969-33890988 Msa0544840:three_prime_UTR 30.0%
ATATGAGAAATCTTTCTTGG+GGG + chr4_1:33891147-33891166 Msa0544840:three_prime_UTR 30.0%
AGATATTTGTTTCCCACTAG+GGG - chr4_1:33886228-33886247 None:intergenic 35.0%
ATGATTAAACCTGAATCTGG+AGG + chr4_1:33886251-33886270 Msa0544840:CDS 35.0%
!! TTTTGTCTGGAATGTTTCTC+AGG + chr4_1:33886380-33886399 Msa0544840:intron 35.0%
AGTTTGAAAATGAAGGCAGA+CGG + chr4_1:33886466-33886485 Msa0544840:CDS 35.0%
TATCAATAGTGTCCCAAAGA+AGG + chr4_1:33886551-33886570 Msa0544840:CDS 35.0%
!! TGGTGGAAAATGTTTTCAAG+TGG + chr4_1:33886630-33886649 Msa0544840:intron 35.0%
TGTAGTAGAACGACAACAAA+AGG - chr4_1:33886935-33886954 None:intergenic 35.0%
ACATCACATCTTTCTGATGA+TGG + chr4_1:33886952-33886971 Msa0544840:intron 35.0%
CATCACATCTTTCTGATGAT+GGG + chr4_1:33886953-33886972 Msa0544840:intron 35.0%
TTGTAGCTTAAAAGGCCAAT+AGG + chr4_1:33887458-33887477 Msa0544840:intron 35.0%
AGAATCAGTTAGATTGGTGA+TGG - chr4_1:33887586-33887605 None:intergenic 35.0%
GCTATGAGGCAAGAAAAAAT+TGG - chr4_1:33887870-33887889 None:intergenic 35.0%
TCCTAGGAGATTATGTTGAT+AGG + chr4_1:33887989-33888008 Msa0544840:CDS 35.0%
CCTAGGAGATTATGTTGATA+GGG + chr4_1:33887990-33888009 Msa0544840:CDS 35.0%
! CTAGGAGATTATGTTGATAG+GGG + chr4_1:33887991-33888010 Msa0544840:CDS 35.0%
!! TGAAGGTACTGTGGATTTAT+AGG + chr4_1:33888052-33888071 Msa0544840:intron 35.0%
!! TTATCAAGTTTGATGGTGTC+AGG + chr4_1:33888092-33888111 Msa0544840:intron 35.0%
CATTAATATCTGCAGCTTCA+TGG - chr4_1:33888184-33888203 None:intergenic 35.0%
! GCAGATATTAATGCCCTTTT+TGG + chr4_1:33888191-33888210 Msa0544840:CDS 35.0%
! AACATTGTGATTTTCTGCTC+AGG + chr4_1:33888306-33888325 Msa0544840:intron 35.0%
! ACATTGTGATTTTCTGCTCA+GGG + chr4_1:33888307-33888326 Msa0544840:intron 35.0%
GGATAAACCGTCTGTTTAAT+TGG + chr4_1:33888359-33888378 Msa0544840:CDS 35.0%
GTTCCAAGTGATTTATTGAC+CGG - chr4_1:33888441-33888460 None:intergenic 35.0%
TATTCAGCGTCCTATTACAA+TGG + chr4_1:33888471-33888490 Msa0544840:CDS 35.0%
!! TTGTGCTGATGGATCTTTTA+TGG + chr4_1:33888506-33888525 Msa0544840:CDS 35.0%
! TTAATCAGTTGCATTTTGCC+TGG + chr4_1:33888735-33888754 Msa0544840:intron 35.0%
!! TTGAAGCATCGTTTGATACT+TGG + chr4_1:33888908-33888927 Msa0544840:intron 35.0%
CTCTCTAGTGTCAATTTAGA+TGG - chr4_1:33889003-33889022 None:intergenic 35.0%
! CATTTTTCCAAACCAAAGCA+TGG - chr4_1:33889150-33889169 None:intergenic 35.0%
TTGGTATTAACCCAAGGAAA+GGG - chr4_1:33889278-33889297 None:intergenic 35.0%
TTTGGTATTAACCCAAGGAA+AGG - chr4_1:33889279-33889298 None:intergenic 35.0%
TCAATCTAATCCCAAAAACC+AGG + chr4_1:33889340-33889359 Msa0544840:intron 35.0%
! GTCTTTATACATAGTGTTGG+TGG - chr4_1:33889501-33889520 None:intergenic 35.0%
! TTTTCAGACCTTATCTCATC+CGG - chr4_1:33889587-33889606 None:intergenic 35.0%
AAACTTAACCCCTACAAAAC+CGG - chr4_1:33889647-33889666 None:intergenic 35.0%
!! GTAGTACAACTCTTTGAAGT+TGG - chr4_1:33889759-33889778 None:intergenic 35.0%
GTAGCATCAGTAAATGAGAA+GGG - chr4_1:33889800-33889819 None:intergenic 35.0%
AGTAGCATCAGTAAATGAGA+AGG - chr4_1:33889801-33889820 None:intergenic 35.0%
TTCTCAGCTACAAACTATTG+CGG + chr4_1:33890142-33890161 Msa0544840:CDS 35.0%
ACTATTGCGGTATTTGTTCA+CGG + chr4_1:33890155-33890174 Msa0544840:intron 35.0%
! ATAGGTACTGCAAATAATGC+TGG + chr4_1:33890246-33890265 Msa0544840:intron 35.0%
! TAGGTACTGCAAATAATGCT+GGG + chr4_1:33890247-33890266 Msa0544840:intron 35.0%
!! GGTAATGGATGAATCAGTTT+AGG - chr4_1:33890309-33890328 None:intergenic 35.0%
GTATCTTCAATATGACGTTC+TGG - chr4_1:33890357-33890376 None:intergenic 35.0%
AACGTCATATTGAAGATACC+TGG + chr4_1:33890358-33890377 Msa0544840:CDS 35.0%
! CAATTTTAAGCAGCACTAAG+AGG - chr4_1:33890435-33890454 None:intergenic 35.0%
!!! TTTTTTGGGGTGTTAATTGC+AGG + chr4_1:33890560-33890579 Msa0544840:intron 35.0%
CCCTTAATGTTTATGCAATG+AGG + chr4_1:33890681-33890700 Msa0544840:three_prime_UTR 35.0%
ATGTTTATGCAATGAGGTTG+TGG + chr4_1:33890687-33890706 Msa0544840:three_prime_UTR 35.0%
CTCGAATGTGTATCTTCTAA+AGG - chr4_1:33890852-33890871 None:intergenic 35.0%
! AGCTTTGTATGAGTAGTGTA+CGG - chr4_1:33890905-33890924 None:intergenic 35.0%
AAAGCTAGAAGATGCAGTTA+GGG + chr4_1:33890919-33890938 Msa0544840:three_prime_UTR 35.0%
ACCAATGGCTCATTTACAAT+GGG - chr4_1:33890954-33890973 None:intergenic 35.0%
TACCAATGGCTCATTTACAA+TGG - chr4_1:33890955-33890974 None:intergenic 35.0%
! AAGATCATGGTTCTGTATCA+TGG + chr4_1:33890982-33891001 Msa0544840:three_prime_UTR 35.0%
! GTATCATGGATTGTTAGTGT+TGG + chr4_1:33890996-33891015 Msa0544840:three_prime_UTR 35.0%
TACAAAATCACAAGGACCAA+TGG + chr4_1:33891078-33891097 Msa0544840:three_prime_UTR 35.0%
ACAAAATCACAAGGACCAAT+GGG + chr4_1:33891079-33891098 Msa0544840:three_prime_UTR 35.0%
ACAACAACACCTATGATACA+GGG - chr4_1:33891174-33891193 None:intergenic 35.0%
CAAAATTCACATCTCTGTGT+CGG - chr4_1:33891246-33891265 None:intergenic 35.0%
TTGAACAGGAGAACTAGCAA+AGG + chr4_1:33886074-33886093 Msa0544840:CDS 40.0%
TAGCAAAGGAGTTGAGTATC+TGG + chr4_1:33886088-33886107 Msa0544840:CDS 40.0%
GTTTGAAAATGAAGGCAGAC+GGG + chr4_1:33886467-33886486 Msa0544840:CDS 40.0%
TAACTGACTATTGAGTGCAG+AGG + chr4_1:33886593-33886612 Msa0544840:intron 40.0%
AACTGACTATTGAGTGCAGA+GGG + chr4_1:33886594-33886613 Msa0544840:intron 40.0%
TTCCTTTAATGGCTCAGCAA+TGG + chr4_1:33886868-33886887 Msa0544840:intron 40.0%
TCCTTTAATGGCTCAGCAAT+GGG + chr4_1:33886869-33886888 Msa0544840:intron 40.0%
GTAGAACGACAACAAAAGGA+AGG - chr4_1:33886931-33886950 None:intergenic 40.0%
TGTGCTATGACCTACATAGA+AGG - chr4_1:33887125-33887144 None:intergenic 40.0%
! ATCTTTGTGATAGTGCAGAG+AGG + chr4_1:33887216-33887235 Msa0544840:CDS 40.0%
AACCAACTGTCATACAGCTT+AGG + chr4_1:33887252-33887271 Msa0544840:CDS 40.0%
ACCAACTGTCATACAGCTTA+GGG + chr4_1:33887253-33887272 Msa0544840:CDS 40.0%
GTGATTTACATGGGCAGTTT+GGG + chr4_1:33887294-33887313 Msa0544840:CDS 40.0%
TGATTTACATGGGCAGTTTG+GGG + chr4_1:33887295-33887314 Msa0544840:CDS 40.0%
AGGAACTTACGCTATATCAC+CGG - chr4_1:33887363-33887382 None:intergenic 40.0%
AAAACCATCCATGGGAACTA+AGG - chr4_1:33887383-33887402 None:intergenic 40.0%
! TAGTTACTTTGGGCCATTAG+TGG + chr4_1:33887417-33887436 Msa0544840:intron 40.0%
CAAGAAATGCACTCCACTAA+TGG - chr4_1:33887433-33887452 None:intergenic 40.0%
GGAATGCATGCAATGCATAT+CGG - chr4_1:33887656-33887675 None:intergenic 40.0%
ATTTCTGTGACAGTCTGCAT+CGG + chr4_1:33887749-33887768 Msa0544840:intron 40.0%
TCTGTTGATCTGATAGTCGA+TGG + chr4_1:33887825-33887844 Msa0544840:intron 40.0%
TTACATCCTAATGCGCTATG+AGG - chr4_1:33887884-33887903 None:intergenic 40.0%
CCCTATCAACATAATCTCCT+AGG - chr4_1:33887993-33888012 None:intergenic 40.0%
TTATAGTTTCCAGGCTGTGT+TGG - chr4_1:33888017-33888036 None:intergenic 40.0%
GCAGAAGACTTATAGTTTCC+AGG - chr4_1:33888026-33888045 None:intergenic 40.0%
AAGTCTTCTGCTTGCTTTGA+AGG + chr4_1:33888035-33888054 Msa0544840:CDS 40.0%
TTCGAATTGAGTGCATTGAG+AGG + chr4_1:33888216-33888235 Msa0544840:CDS 40.0%
AATTGAGTGCATTGAGAGGA+TGG + chr4_1:33888220-33888239 Msa0544840:CDS 40.0%
AGAGAGATGGAATTTGGACA+TGG + chr4_1:33888332-33888351 Msa0544840:CDS 40.0%
GAGGAAGCCAATTAAACAGA+CGG - chr4_1:33888369-33888388 None:intergenic 40.0%
TTCTCAATTAGAGCTGCAAG+AGG - chr4_1:33888388-33888407 None:intergenic 40.0%
GATCCTGCTTCCATTGTAAT+AGG - chr4_1:33888484-33888503 None:intergenic 40.0%
ACAGCATGAAACGGTTCTAT+AGG + chr4_1:33888592-33888611 Msa0544840:intron 40.0%
!!! GTCCAGGGTTAGTTACTTTT+GGG + chr4_1:33888667-33888686 Msa0544840:CDS 40.0%
!!! TCCAGGGTTAGTTACTTTTG+GGG + chr4_1:33888668-33888687 Msa0544840:CDS 40.0%
TGCAAACGATTAACCCACTT+GGG - chr4_1:33889090-33889109 None:intergenic 40.0%
TTGCAAACGATTAACCCACT+TGG - chr4_1:33889091-33889110 None:intergenic 40.0%
! TTTGAAGCCATGCTTTGGTT+TGG + chr4_1:33889140-33889159 Msa0544840:intron 40.0%
! ATCCTGACTGGAACAGTTTT+TGG + chr4_1:33889208-33889227 Msa0544840:intron 40.0%
TGGTATTAACCCAAGGAAAG+GGG - chr4_1:33889277-33889296 None:intergenic 40.0%
!! GATTATGGCTCCTGGTTTTT+GGG - chr4_1:33889353-33889372 None:intergenic 40.0%
!! AGATTATGGCTCCTGGTTTT+TGG - chr4_1:33889354-33889373 None:intergenic 40.0%
TTTGATCTGTGTGTACAGCT+AGG - chr4_1:33889451-33889470 None:intergenic 40.0%
!! GGTTTTGTAGGGGTTAAGTT+TGG + chr4_1:33889646-33889665 Msa0544840:intron 40.0%
!! GGCCCAACCAAATTTTAAGA+TGG + chr4_1:33889667-33889686 Msa0544840:intron 40.0%
CAAAATTCCATTACACGGTC+AGG - chr4_1:33890031-33890050 None:intergenic 40.0%
!! ATTTTGGCATGTGTGGGAAT+AGG + chr4_1:33890228-33890247 Msa0544840:intron 40.0%
! AGGTACTGCAAATAATGCTG+GGG + chr4_1:33890248-33890267 Msa0544840:intron 40.0%
!!! GGCGATATTAGTTTTGGGTA+GGG + chr4_1:33890269-33890288 Msa0544840:CDS 40.0%
TATTGAAGATACCTGGATGC+AGG + chr4_1:33890365-33890384 Msa0544840:CDS 40.0%
TGTACATAACACCGAAGTTC+AGG - chr4_1:33890724-33890743 None:intergenic 40.0%
AGATACACATTCGAGAAGCA+AGG + chr4_1:33890857-33890876 Msa0544840:three_prime_UTR 40.0%
CAAAGCTAGAAGATGCAGTT+AGG + chr4_1:33890918-33890937 Msa0544840:three_prime_UTR 40.0%
AATGGCTCATTTACAATGGG+TGG - chr4_1:33890951-33890970 None:intergenic 40.0%
ACCCATTGTAAATGAGCCAT+TGG + chr4_1:33890950-33890969 Msa0544840:three_prime_UTR 40.0%
CAAAATCACAAGGACCAATG+GGG + chr4_1:33891080-33891099 Msa0544840:three_prime_UTR 40.0%
CACAACAACACCTATGATAC+AGG - chr4_1:33891175-33891194 None:intergenic 40.0%
GAGGAGTTGAATCACCTGAT+CGG + chr4_1:33886183-33886202 Msa0544840:CDS 45.0%
AGGAGTTGAATCACCTGATC+GGG + chr4_1:33886184-33886203 Msa0544840:CDS 45.0%
GCCTGATTCCACCAGAATTT+GGG - chr4_1:33886277-33886296 None:intergenic 45.0%
AGCCTGATTCCACCAGAATT+TGG - chr4_1:33886278-33886297 None:intergenic 45.0%
! TGTCTGGAATGTTTCTCAGG+TGG + chr4_1:33886383-33886402 Msa0544840:intron 45.0%
! CAGAGGGTGCATATAACTGA+TGG + chr4_1:33886610-33886629 Msa0544840:intron 45.0%
AGGGTGCATATAACTGATGG+TGG + chr4_1:33886613-33886632 Msa0544840:intron 45.0%
ACCCATTGCTGAGCCATTAA+AGG - chr4_1:33886873-33886892 None:intergenic 45.0%
CAGATTCAGGACAACACACT+CGG - chr4_1:33886985-33887004 None:intergenic 45.0%
AAGAAAAACTGCCGTCGAAC+TGG - chr4_1:33887176-33887195 None:intergenic 45.0%
! AGTTCGACGGCAGTTTTTCT+TGG + chr4_1:33887175-33887194 Msa0544840:CDS 45.0%
GGTGATTTACATGGGCAGTT+TGG + chr4_1:33887293-33887312 Msa0544840:CDS 45.0%
GTGAACCATACTCGTCAAAG+AGG - chr4_1:33887331-33887350 None:intergenic 45.0%
TATGGTTCACCATCAACTGC+CGG + chr4_1:33887341-33887360 Msa0544840:CDS 45.0%
CGTAAGTTCCTTAGTTCCCA+TGG + chr4_1:33887372-33887391 Msa0544840:intron 45.0%
AGTTCCTTAGTTCCCATGGA+TGG + chr4_1:33887376-33887395 Msa0544840:intron 45.0%
GCAGGAGGTAACAAACTAAG+TGG - chr4_1:33887564-33887583 None:intergenic 45.0%
!! TCAGTTAGATTGGTGATGGC+AGG - chr4_1:33887582-33887601 None:intergenic 45.0%
CATGCAATGCATATCGGTGA+TGG - chr4_1:33887650-33887669 None:intergenic 45.0%
CATTGCATGCATTCCCATCA+TGG + chr4_1:33887661-33887680 Msa0544840:intron 45.0%
TTCTTGCCTCATAGCGCATT+AGG + chr4_1:33887875-33887894 Msa0544840:intron 45.0%
!! TGCTTGCTTTGAAGGTACTG+TGG + chr4_1:33888043-33888062 Msa0544840:intron 45.0%
AGTGCATTGAGAGGATGGTA+AGG + chr4_1:33888225-33888244 Msa0544840:intron 45.0%
AGGGTGAGAGAGATGGAATT+TGG + chr4_1:33888326-33888345 Msa0544840:intron 45.0%
ATGGAATTTGGACATGGCAC+CGG + chr4_1:33888338-33888357 Msa0544840:CDS 45.0%
! ATTTGCATGCATGGGGGTAT+TGG + chr4_1:33888415-33888434 Msa0544840:CDS 45.0%
TGGCCGGTCAATAAATCACT+TGG + chr4_1:33888435-33888454 Msa0544840:CDS 45.0%
CGTCCTATTACAATGGAAGC+AGG + chr4_1:33888478-33888497 Msa0544840:CDS 45.0%
AGCAGGATCAATTGTGCTGA+TGG + chr4_1:33888495-33888514 Msa0544840:CDS 45.0%
!!! GGTCCAGGGTTAGTTACTTT+TGG + chr4_1:33888666-33888685 Msa0544840:CDS 45.0%
ACCCCAAAAGTAACTAACCC+TGG - chr4_1:33888672-33888691 None:intergenic 45.0%
AACGATTAACCCACTTGGGT+TGG - chr4_1:33889086-33889105 None:intergenic 45.0%
GTCCAAAAACTGTTCCAGTC+AGG - chr4_1:33889213-33889232 None:intergenic 45.0%
TAATCACGAGTTCGGTCAGT+AGG - chr4_1:33889248-33889267 None:intergenic 45.0%
! CACAGACTCTGAGGAGATTA+TGG - chr4_1:33889368-33889387 None:intergenic 45.0%
!! TTTTTAGCGCACAGACTCTG+AGG - chr4_1:33889377-33889396 None:intergenic 45.0%
GTCTTACACCGGATGAGATA+AGG + chr4_1:33889576-33889595 Msa0544840:intron 45.0%
GGTATGAGAGCCTATCCAAT+TGG + chr4_1:33889688-33889707 Msa0544840:intron 45.0%
AGCAAGTGGTCCAATTGGAT+AGG - chr4_1:33889701-33889720 None:intergenic 45.0%
! CAATTGGACCACTTGCTACT+GGG + chr4_1:33889704-33889723 Msa0544840:intron 45.0%
!! TGCTGGGGCGATATTAGTTT+TGG + chr4_1:33890263-33890282 Msa0544840:CDS 45.0%
!!! GCTGGGGCGATATTAGTTTT+GGG + chr4_1:33890264-33890283 Msa0544840:CDS 45.0%
!!! GGGCGATATTAGTTTTGGGT+AGG + chr4_1:33890268-33890287 Msa0544840:CDS 45.0%
!!! AGTTTTGGGTAGGGATCTTG+TGG + chr4_1:33890278-33890297 Msa0544840:CDS 45.0%
!! GAAGTTTCTGGTGAAAGTGC+AGG - chr4_1:33890333-33890352 None:intergenic 45.0%
TGACGTTCTGGTGAAGTTTC+TGG - chr4_1:33890345-33890364 None:intergenic 45.0%
TTGTGCTATCGCCTGAACTT+CGG + chr4_1:33890710-33890729 Msa0544840:three_prime_UTR 45.0%
!!! AGCATGATGCCATTTTCCCA+TGG + chr4_1:33890745-33890764 Msa0544840:three_prime_UTR 45.0%
!!! GCATGATGCCATTTTCCCAT+GGG + chr4_1:33890746-33890765 Msa0544840:three_prime_UTR 45.0%
ACACATTCGAGAAGCAAGGT+CGG + chr4_1:33890861-33890880 Msa0544840:three_prime_UTR 45.0%
GCTCATTTACAATGGGTGGA+TGG - chr4_1:33890947-33890966 None:intergenic 45.0%
!!! TTTTATAAAAAAATATTTGA+CGG - chr4_1:33890395-33890414 None:intergenic 5.0%
!!! TCAAATATTTTTTTATAAAA+TGG + chr4_1:33890395-33890414 Msa0544840:intron 5.0%
!!! TTGTTATAAATAATTTTTTT+TGG + chr4_1:33890545-33890564 Msa0544840:intron 5.0%
!!! TGTTATAAATAATTTTTTTT+GGG + chr4_1:33890546-33890565 Msa0544840:intron 5.0%
TGAAGCTATCAGTGCCACAC+TGG + chr4_1:33886133-33886152 Msa0544840:CDS 50.0%
GAATTTGGGCCTCCAGATTC+AGG - chr4_1:33886263-33886282 None:intergenic 50.0%
GAATCTGGAGGCCCAAATTC+TGG + chr4_1:33886263-33886282 Msa0544840:CDS 50.0%
GCCCAAATTCTGGTGGAATC+AGG + chr4_1:33886273-33886292 Msa0544840:CDS 50.0%
TAATGCTCCACCAGTCTCTG+CGG - chr4_1:33886415-33886434 None:intergenic 50.0%
GAGCATTAGGTGGCATGGTT+AGG + chr4_1:33886427-33886446 Msa0544840:CDS 50.0%
AAGGCAGACGGGTCAGTTAT+GGG + chr4_1:33886478-33886497 Msa0544840:CDS 50.0%
CTAGCAGCAGTTGCACTTTC+TGG - chr4_1:33886507-33886526 None:intergenic 50.0%
TAATGGCTCAGCAATGGGTC+AGG + chr4_1:33886874-33886893 Msa0544840:intron 50.0%
CGAGTGTGTTGTCCTGAATC+TGG + chr4_1:33886983-33887002 Msa0544840:intron 50.0%
CTCAACATCGGACCAGATTC+AGG - chr4_1:33886998-33887017 None:intergenic 50.0%
AAAAACTGCCGTCGAACTGG+TGG - chr4_1:33887173-33887192 None:intergenic 50.0%
!! CTGTATGACAGTTGGTTCGC+TGG - chr4_1:33887249-33887268 None:intergenic 50.0%
GCCCTAAGCTGTATGACAGT+TGG - chr4_1:33887257-33887276 None:intergenic 50.0%
ATGCGCCTCTTTGACGAGTA+TGG + chr4_1:33887323-33887342 Msa0544840:CDS 50.0%
GCTATATCACCGGCAGTTGA+TGG - chr4_1:33887353-33887372 None:intergenic 50.0%
!! GTTAGATTGGTGATGGCAGG+AGG - chr4_1:33887579-33887598 None:intergenic 50.0%
TCCTACAGAGAATGACAGCG+TGG + chr4_1:33888620-33888639 Msa0544840:CDS 50.0%
TCCACGCTGTCATTCTCTGT+AGG - chr4_1:33888624-33888643 None:intergenic 50.0%
ACAGAGAATGACAGCGTGGA+AGG + chr4_1:33888624-33888643 Msa0544840:CDS 50.0%
CAGAGAATGACAGCGTGGAA+GGG + chr4_1:33888625-33888644 Msa0544840:CDS 50.0%
AACCCTGGACCTCTAGCATT+CGG - chr4_1:33888657-33888676 None:intergenic 50.0%
GAATCGAACCTGAGACCTCA+AGG + chr4_1:33889022-33889041 Msa0544840:intron 50.0%
!! TGGCCTAGTGCTATTGGCTT+GGG - chr4_1:33889066-33889085 None:intergenic 50.0%
! TTGGCCTAGTGCTATTGGCT+TGG - chr4_1:33889067-33889086 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGCTAT+TGG - chr4_1:33889072-33889091 None:intergenic 50.0%
GACCGAACTCGTGATTACCT+AGG + chr4_1:33889251-33889270 Msa0544840:intron 50.0%
GGCCTAGGTAATCACGAGTT+CGG - chr4_1:33889256-33889275 None:intergenic 50.0%
ATTACCTAGGCCCCTTTCCT+TGG + chr4_1:33889264-33889283 Msa0544840:intron 50.0%
TTACCTAGGCCCCTTTCCTT+GGG + chr4_1:33889265-33889284 Msa0544840:intron 50.0%
TCTGAGGAGATTATGGCTCC+TGG - chr4_1:33889361-33889380 None:intergenic 50.0%
!! AAACCGGCTTGTAGGGTGAA+GGG - chr4_1:33889631-33889650 None:intergenic 50.0%
!! AAAACCGGCTTGTAGGGTGA+AGG - chr4_1:33889632-33889651 None:intergenic 50.0%
!! ACCCTACAAGCCGGTTTTGT+AGG + chr4_1:33889634-33889653 Msa0544840:intron 50.0%
!! CCCTACAAAACCGGCTTGTA+GGG - chr4_1:33889638-33889657 None:intergenic 50.0%
!! CCCTACAAGCCGGTTTTGTA+GGG + chr4_1:33889635-33889654 Msa0544840:intron 50.0%
!! CCTACAAGCCGGTTTTGTAG+GGG + chr4_1:33889636-33889655 Msa0544840:intron 50.0%
CCAGTAGCAAGTGGTCCAAT+TGG - chr4_1:33889706-33889725 None:intergenic 50.0%
! CCAATTGGACCACTTGCTAC+TGG + chr4_1:33889703-33889722 Msa0544840:intron 50.0%
TCGTGCACATGAATGCGTGA+TGG + chr4_1:33890078-33890097 Msa0544840:CDS 50.0%
! GCACATGAATGCGTGATGGA+TGG + chr4_1:33890082-33890101 Msa0544840:CDS 50.0%
!!! TGGCTTTGAGCGTTTTGCTC+AGG + chr4_1:33890102-33890121 Msa0544840:CDS 50.0%
!!! GGCTTTGAGCGTTTTGCTCA+GGG + chr4_1:33890103-33890122 Msa0544840:CDS 50.0%
TTTGGGTAGGGATCTTGTGG+TGG + chr4_1:33890281-33890300 Msa0544840:CDS 50.0%
! GGTGAAAGTGCAGGTGGTAA+TGG - chr4_1:33890324-33890343 None:intergenic 50.0%
!! GTTTCTGGTGAAAGTGCAGG+TGG - chr4_1:33890330-33890349 None:intergenic 50.0%
TTGACGGAATACCTGCATCC+AGG - chr4_1:33890379-33890398 None:intergenic 50.0%
AGACCACCAACACCAACTAG+AGG + chr4_1:33890597-33890616 Msa0544840:CDS 50.0%
! GAACCACGGTCATTTGCTAC+AGG - chr4_1:33890630-33890649 None:intergenic 50.0%
ATATCCAAGCCAGCGAACCA+CGG - chr4_1:33890644-33890663 None:intergenic 50.0%
CTCGCATACCCATGGGAAAA+TGG - chr4_1:33890757-33890776 None:intergenic 50.0%
CAGAAAGCTCGCATACCCAT+GGG - chr4_1:33890764-33890783 None:intergenic 50.0%
TCAGAAAGCTCGCATACCCA+TGG - chr4_1:33890765-33890784 None:intergenic 50.0%
CCAGCACTGTGAAAGTCATC+AGG - chr4_1:33890807-33890826 None:intergenic 50.0%
CCTGATGACTTTCACAGTGC+TGG + chr4_1:33890804-33890823 Msa0544840:three_prime_UTR 50.0%
TCCTTGTGCAGCAAAGAGCT+TGG + chr4_1:33891286-33891305 Msa0544840:three_prime_UTR 50.0%
CCTTGTGCAGCAAAGAGCTT+GGG + chr4_1:33891287-33891306 Msa0544840:three_prime_UTR 50.0%
CTTGTGCAGCAAAGAGCTTG+GGG + chr4_1:33891288-33891307 Msa0544840:three_prime_UTR 50.0%
TTGTGCAGCAAAGAGCTTGG+GGG + chr4_1:33891289-33891308 Msa0544840:three_prime_UTR 50.0%
TCCATTCTCTTGCCGTGCCT+TGG - chr4_1:33886165-33886184 None:intergenic 55.0%
AAGGCACGGCAAGAGAATGG+AGG + chr4_1:33886164-33886183 Msa0544840:CDS 55.0%
AATCACCTGATCGGGACCGT+GGG + chr4_1:33886192-33886211 Msa0544840:CDS 55.0%
TCTGGAGGCCCAAATTCTGG+TGG + chr4_1:33886266-33886285 Msa0544840:CDS 55.0%
GTGGTTATTGCCGCAGAGAC+TGG + chr4_1:33886402-33886421 Msa0544840:CDS 55.0%
GTTATTGCCGCAGAGACTGG+TGG + chr4_1:33886405-33886424 Msa0544840:CDS 55.0%
! GCAGAGACTGGTGGAGCATT+AGG + chr4_1:33886414-33886433 Msa0544840:CDS 55.0%
! GAGACTGGTGGAGCATTAGG+TGG + chr4_1:33886417-33886436 Msa0544840:CDS 55.0%
! TGGTGGAGCATTAGGTGGCA+TGG + chr4_1:33886422-33886441 Msa0544840:CDS 55.0%
GAAGGCAGACGGGTCAGTTA+TGG + chr4_1:33886477-33886496 Msa0544840:CDS 55.0%
GCACACCTCTTAAAACCCCG+TGG + chr4_1:33887140-33887159 Msa0544840:CDS 55.0%
ACCTCTTAAAACCCCGTGGC+TGG + chr4_1:33887144-33887163 Msa0544840:CDS 55.0%
!!! TCCAGCCACGGGGTTTTAAG+AGG - chr4_1:33887148-33887167 None:intergenic 55.0%
AACTGGTGGTTTCCAGCCAC+GGG - chr4_1:33887159-33887178 None:intergenic 55.0%
GAACTGGTGGTTTCCAGCCA+CGG - chr4_1:33887160-33887179 None:intergenic 55.0%
GCTGGAAACCACCAGTTCGA+CGG + chr4_1:33887162-33887181 Msa0544840:CDS 55.0%
TCTGCTCAGGGTGAGAGAGA+TGG + chr4_1:33888319-33888338 Msa0544840:intron 55.0%
GACCGAATGCTAGAGGTCCA+GGG + chr4_1:33888652-33888671 Msa0544840:CDS 55.0%
TCGAACCTGAGACCTCAAGG+AGG + chr4_1:33889025-33889044 Msa0544840:intron 55.0%
!! GTGCTATTGGCTTGGGACCT+GGG - chr4_1:33889059-33889078 None:intergenic 55.0%
!! AGTGCTATTGGCTTGGGACC+TGG - chr4_1:33889060-33889079 None:intergenic 55.0%
GGTCCCAAGCCAATAGCACT+AGG + chr4_1:33889060-33889079 Msa0544840:intron 55.0%
TAGCACTAGGCCAACCCAAG+TGG + chr4_1:33889073-33889092 Msa0544840:intron 55.0%
AGCACTAGGCCAACCCAAGT+GGG + chr4_1:33889074-33889093 Msa0544840:intron 55.0%
TAACCCAAGGAAAGGGGCCT+AGG - chr4_1:33889271-33889290 None:intergenic 55.0%
!! CCCCTACAAAACCGGCTTGT+AGG - chr4_1:33889639-33889658 None:intergenic 55.0%
GCAAGAGACCCAGTAGCAAG+TGG - chr4_1:33889715-33889734 None:intergenic 55.0%
GCTACTGGGTCTCTTGCTAC+CGG + chr4_1:33889718-33889737 Msa0544840:intron 55.0%
CTACTGGGTCTCTTGCTACC+GGG + chr4_1:33889719-33889738 Msa0544840:intron 55.0%
!! TGAAGTTGGGTTGACCCGAG+TGG - chr4_1:33889745-33889764 None:intergenic 55.0%
GTTGCAGCCTGACCGTGTAA+TGG + chr4_1:33890021-33890040 Msa0544840:intron 55.0%
!! CGACCTCTAGTTGGTGTTGG+TGG - chr4_1:33890603-33890622 None:intergenic 55.0%
! GGACGACCTCTAGTTGGTGT+TGG - chr4_1:33890606-33890625 None:intergenic 55.0%
ACAGGAGGACGACCTCTAGT+TGG - chr4_1:33890612-33890631 None:intergenic 55.0%
! CCACGGTCATTTGCTACAGG+AGG - chr4_1:33890627-33890646 None:intergenic 55.0%
CCTCCTGTAGCAAATGACCG+TGG + chr4_1:33890624-33890643 Msa0544840:CDS 55.0%
AGCAAATGACCGTGGTTCGC+TGG + chr4_1:33890632-33890651 Msa0544840:CDS 55.0%
TGTACGGTGTACCTACCAGC+AGG - chr4_1:33890889-33890908 None:intergenic 55.0%
CTTGGGGGTCCCTGTATCAT+AGG + chr4_1:33891162-33891181 Msa0544840:three_prime_UTR 55.0%
CCCAAGCTCTTTGCTGCACA+AGG - chr4_1:33891290-33891309 None:intergenic 55.0%
GCCAAGGCACGGCAAGAGAA+TGG + chr4_1:33886161-33886180 Msa0544840:CDS 60.0%
GAATCACCTGATCGGGACCG+TGG + chr4_1:33886191-33886210 Msa0544840:CDS 60.0%
ATCACCTGATCGGGACCGTG+GGG + chr4_1:33886193-33886212 Msa0544840:CDS 60.0%
ACTGGTGGTTTCCAGCCACG+GGG - chr4_1:33887158-33887177 None:intergenic 60.0%
TGATAGGGGCCAACACAGCC+TGG + chr4_1:33888005-33888024 Msa0544840:CDS 60.0%
!! GCATGCATGGGGGTATTGGC+CGG + chr4_1:33888419-33888438 Msa0544840:CDS 60.0%
CGACCGAATGCTAGAGGTCC+AGG + chr4_1:33888651-33888670 Msa0544840:CDS 60.0%
GTGCTCCTCCTTGAGGTCTC+AGG - chr4_1:33889033-33889052 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTTG+AGG - chr4_1:33889040-33889059 None:intergenic 60.0%
! TCAAGGAGGAGCACACTCCC+AGG + chr4_1:33889039-33889058 Msa0544840:intron 60.0%
GCACCCTTCACCCTACAAGC+CGG + chr4_1:33889625-33889644 Msa0544840:intron 60.0%
TCTCTTGCTACCGGGCCACT+CGG + chr4_1:33889727-33889746 Msa0544840:intron 60.0%
! ATGACCGTGGTTCGCTGGCT+TGG + chr4_1:33890637-33890656 Msa0544840:CDS 60.0%
GAAGCAAGGTCGGTACCTGC+TGG + chr4_1:33890871-33890890 Msa0544840:three_prime_UTR 60.0%
CAAGGTCGGTACCTGCTGGT+AGG + chr4_1:33890875-33890894 Msa0544840:three_prime_UTR 60.0%
! TGCCACACTGGCTGCTGCCA+AGG + chr4_1:33886145-33886164 Msa0544840:CDS 65.0%
TGCCTTGGCAGCAGCCAGTG+TGG - chr4_1:33886150-33886169 None:intergenic 65.0%
! CACTGGCTGCTGCCAAGGCA+CGG + chr4_1:33886150-33886169 Msa0544840:CDS 65.0%
TAGGGGTAGCCTCAGCCCCA+CGG - chr4_1:33886211-33886230 None:intergenic 65.0%
GGGCTGAGGCTACCCCTAGT+GGG + chr4_1:33886213-33886232 Msa0544840:CDS 65.0%
GGGCTGCGACCGAATGCTAG+AGG + chr4_1:33888645-33888664 Msa0544840:CDS 65.0%
CTCTTGCTACCGGGCCACTC+GGG + chr4_1:33889728-33889747 Msa0544840:intron 65.0%
!! TTGGGTTGACCCGAGTGGCC+CGG - chr4_1:33889740-33889759 None:intergenic 65.0%
TCAGCCCCACGGTCCCGATC+AGG - chr4_1:33886200-33886219 None:intergenic 70.0%
TGATCGGGACCGTGGGGCTG+AGG + chr4_1:33886199-33886218 Msa0544840:CDS 70.0%
GGGGCTGAGGCTACCCCTAG+TGG + chr4_1:33886212-33886231 Msa0544840:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 33886074 33891381 33886074 ID=Msa0544840;Name=Msa0544840
chr4_1 mRNA 33886074 33891381 33886074 ID=Msa0544840-mRNA-1;Parent=Msa0544840;Name=Msa0544840-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.9|1|1|1|10|716|487
chr4_1 exon 33886074 33886310 33886074 ID=Msa0544840-mRNA-1:exon:8687;Parent=Msa0544840-mRNA-1
chr4_1 exon 33886402 33886572 33886402 ID=Msa0544840-mRNA-1:exon:8688;Parent=Msa0544840-mRNA-1
chr4_1 exon 33887134 33887372 33887134 ID=Msa0544840-mRNA-1:exon:8689;Parent=Msa0544840-mRNA-1
chr4_1 exon 33887972 33888056 33887972 ID=Msa0544840-mRNA-1:exon:8690;Parent=Msa0544840-mRNA-1
chr4_1 exon 33888143 33888241 33888143 ID=Msa0544840-mRNA-1:exon:8691;Parent=Msa0544840-mRNA-1
chr4_1 exon 33888328 33888527 33888328 ID=Msa0544840-mRNA-1:exon:8692;Parent=Msa0544840-mRNA-1
chr4_1 exon 33888614 33888689 33888614 ID=Msa0544840-mRNA-1:exon:8693;Parent=Msa0544840-mRNA-1
chr4_1 exon 33890028 33890163 33890028 ID=Msa0544840-mRNA-1:exon:8694;Parent=Msa0544840-mRNA-1
chr4_1 exon 33890250 33890386 33890250 ID=Msa0544840-mRNA-1:exon:8695;Parent=Msa0544840-mRNA-1
chr4_1 exon 33890582 33891381 33890582 ID=Msa0544840-mRNA-1:exon:8696;Parent=Msa0544840-mRNA-1
chr4_1 CDS 33886074 33886310 33886074 ID=Msa0544840-mRNA-1:cds;Parent=Msa0544840-mRNA-1
chr4_1 CDS 33886402 33886572 33886402 ID=Msa0544840-mRNA-1:cds;Parent=Msa0544840-mRNA-1
chr4_1 CDS 33887134 33887372 33887134 ID=Msa0544840-mRNA-1:cds;Parent=Msa0544840-mRNA-1
chr4_1 CDS 33887972 33888056 33887972 ID=Msa0544840-mRNA-1:cds;Parent=Msa0544840-mRNA-1
chr4_1 CDS 33888143 33888241 33888143 ID=Msa0544840-mRNA-1:cds;Parent=Msa0544840-mRNA-1
chr4_1 CDS 33888328 33888527 33888328 ID=Msa0544840-mRNA-1:cds;Parent=Msa0544840-mRNA-1
chr4_1 CDS 33888614 33888689 33888614 ID=Msa0544840-mRNA-1:cds;Parent=Msa0544840-mRNA-1
chr4_1 CDS 33890028 33890163 33890028 ID=Msa0544840-mRNA-1:cds;Parent=Msa0544840-mRNA-1
chr4_1 CDS 33890250 33890386 33890250 ID=Msa0544840-mRNA-1:cds;Parent=Msa0544840-mRNA-1
chr4_1 CDS 33890582 33890665 33890582 ID=Msa0544840-mRNA-1:cds;Parent=Msa0544840-mRNA-1
chr4_1 three_prime_UTR 33890666 33891381 33890666 ID=Msa0544840-mRNA-1:three_prime_utr;Parent=Msa0544840-mRNA-1
Gene Sequence

>Msa0544840

TTGAACAGGAGAACTAGCAAAGGAGTTGAGTATCTGGTTGAAGCATCTGCTGCAGAAGCTGAAGCTATCAGTGCCACACTGGCTGCTGCCAAGGCACGGCAAGAGAATGGAGGAGTTGAATCACCTGATCGGGACCGTGGGGCTGAGGCTACCCCTAGTGGGAAACAAATATCTTTCATGATTAAACCTGAATCTGGAGGCCCAAATTCTGGTGGAATCAGGCTGCATCACAGAGCTGTGGTTATTGCCGCAGAGACTGGTGGAGCATTAGGTGGCATGGTTAGGCAGCTTTCAATTGATCAGTTTGAAAATGAAGGCAGACGGGTCAGTTATGGGACTCCAGAAAGTGCAACTGCTGCTAGAAAGTTATTAGATCGGCAGATGTCTATCAATAGTGTCCCAAAGAAGGTCATAGCACACCTCTTAAAACCCCGTGGCTGGAAACCACCAGTTCGACGGCAGTTTTTCTTGGATTGCAATGAAATTGCAGATCTTTGTGATAGTGCAGAGAGGATATTTTCCAGCGAACCAACTGTCATACAGCTTAGGGCACCAATTAAAATATTTGGTGATTTACATGGGCAGTTTGGGGATCTGATGCGCCTCTTTGACGAGTATGGTTCACCATCAACTGCCGGTGATATAGCATATATCGATTATCTATTCCTAGGAGATTATGTTGATAGGGGCCAACACAGCCTGGAAACTATAAGTCTTCTGCTTGCTTTGAAGGTTGAGTATCCAAACAATATTCATTTAATACGTGGAAACCATGAAGCTGCAGATATTAATGCCCTTTTTGGTTTTCGAATTGAGTGCATTGAGAGGATGGGTGAGAGAGATGGAATTTGGACATGGCACCGGATAAACCGTCTGTTTAATTGGCTTCCTCTTGCAGCTCTAATTGAGAAAAAAATTATTTGCATGCATGGGGGTATTGGCCGGTCAATAAATCACTTGGAACAAATCGAGAATATTCAGCGTCCTATTACAATGGAAGCAGGATCAATTGTGCTGATGGATCTTTTATGGTCTGATCCTACAGAGAATGACAGCGTGGAAGGGCTGCGACCGAATGCTAGAGGTCCAGGGTTAGTTACTTTTGGGCCTGACCGTGTAATGGAATTTTGCAATAACAATGATCTTCAGCTGATTGTTCGTGCACATGAATGCGTGATGGATGGCTTTGAGCGTTTTGCTCAGGGACATTTAATCACCCTTTTCTCAGCTACAAACTATTGCGGTACTGCAAATAATGCTGGGGCGATATTAGTTTTGGGTAGGGATCTTGTGGTGGTTCCTAAACTGATTCATCCATTACCACCTGCACTTTCACCAGAAACTTCACCAGAACGTCATATTGAAGATACCTGGATGCAGGAGTTGAATGCTAATAGACCACCAACACCAACTAGAGGTCGTCCTCCTGTAGCAAATGACCGTGGTTCGCTGGCTTGGATATAG
Protein sequence

>Msa0544840

LNRRTSKGVEYLVEASAAEAEAISATLAAAKARQENGGVESPDRDRGAEATPSGKQISFMIKPESGGPNSGGIRLHHRAVVIAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPTVIQLRAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLALKVEYPNNIHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHLEQIENIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPALSPETSPERHIEDTWMQELNANRPPTPTRGRPPVANDRGSLAWI*