AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0393820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0393820 MtrunA17_Chr3g0079341 96.584 527 18 0 1 527 1 527 0.0 1080
Msa0393820 MtrunA17_Chr3g0079361 96.584 527 18 0 1 527 1 527 0.0 1078
Msa0393820 MtrunA17_Chr3g0090091 94.140 529 28 2 1 527 1 528 0.0 1052
Msa0393820 MtrunA17_Chr3g0079351 95.636 527 23 0 1 527 1 527 0.0 1046
Msa0393820 MtrunA17_Chr4g0018371 66.403 506 158 5 32 527 36 539 0.0 705
Msa0393820 MtrunA17_Chr7g0234731 94.276 297 17 0 1 297 20 316 0.0 568
Msa0393820 MtrunA17_Chr4g0011771 52.662 526 223 12 7 527 9 513 0.0 518
Msa0393820 MtrunA17_Chr7g0234711 97.414 232 6 0 296 527 38 269 4.45e-173 489
Msa0393820 MtrunA17_Chr4g0011791 48.120 532 241 14 3 527 6 509 4.59e-165 478
Msa0393820 MtrunA17_Chr8g0391291 46.693 514 244 8 36 527 34 539 5.21e-160 466
Msa0393820 MtrunA17_Chr8g0391311 46.498 514 245 8 36 527 36 541 1.11e-159 465
Msa0393820 MtrunA17_Chr7g0269541 49.095 442 200 9 102 523 116 552 2.76e-142 421
Msa0393820 MtrunA17_Chr7g0233831 45.401 511 251 13 35 527 55 555 1.46e-140 417
Msa0393820 MtrunA17_Chr7g0233771 44.874 517 250 13 37 527 47 554 3.68e-138 410
Msa0393820 MtrunA17_Chr7g0233801 51.338 411 181 10 129 527 150 553 2.11e-136 406
Msa0393820 MtrunA17_Chr4g0069841 49.545 440 196 10 102 527 89 516 9.30e-134 398
Msa0393820 MtrunA17_Chr2g0302021 48.301 412 206 6 119 527 118 525 4.39e-131 391
Msa0393820 MtrunA17_Chr3g0126771 41.822 538 268 14 24 527 71 597 1.08e-130 393
Msa0393820 MtrunA17_Chr8g0345281 42.614 528 257 12 36 527 72 589 2.62e-130 392
Msa0393820 MtrunA17_Chr4g0011751 46.528 432 215 6 102 527 68 489 3.26e-130 388
Msa0393820 MtrunA17_Chr4g0069861 45.249 442 228 6 96 527 80 517 2.32e-128 384
Msa0393820 MtrunA17_Chr1g0147051 43.777 466 224 11 97 527 145 607 1.26e-123 375
Msa0393820 MtrunA17_Chr4g0069881 39.020 510 287 11 30 527 38 535 5.79e-123 371
Msa0393820 MtrunA17_Chr1g0192331 41.527 537 280 13 7 527 10 528 1.84e-122 369
Msa0393820 MtrunA17_Chr7g0272141 47.188 409 190 7 134 527 145 542 1.72e-121 367
Msa0393820 MtrunA17_Chr1g0175661 40.248 564 277 16 8 527 11 558 2.63e-121 367
Msa0393820 MtrunA17_Chr7g0269531 42.827 467 222 9 102 527 103 565 3.59e-120 365
Msa0393820 MtrunA17_Chr3g0080391 43.271 483 244 11 66 527 101 574 4.94e-119 362
Msa0393820 MtrunA17_Chr8g0354901 41.109 523 270 12 29 527 73 581 8.55e-119 362
Msa0393820 MtrunA17_Chr1g0195301 40.602 532 268 13 36 527 32 555 1.70e-118 360
Msa0393820 MtrunA17_Chr1g0195321 40.602 532 268 13 36 527 32 555 1.70e-118 360
Msa0393820 MtrunA17_Chr1g0195331 40.602 532 268 13 36 527 32 555 6.40e-118 358
Msa0393820 MtrunA17_Chr8g0354911 51.051 333 156 4 200 527 282 612 1.37e-115 354
Msa0393820 MtrunA17_Chr7g0269521 40.672 536 261 15 36 527 40 562 2.67e-114 350
Msa0393820 MtrunA17_Chr7g0269511 39.925 536 265 12 36 527 42 564 4.12e-114 349
Msa0393820 MtrunA17_Chr1g0195351 40.038 532 269 14 36 527 32 553 2.44e-112 344
Msa0393820 MtrunA17_Chr3g0080381 52.698 315 145 3 215 527 316 628 2.13e-111 344
Msa0393820 MtrunA17_Chr8g0345211 39.423 520 269 12 36 527 81 582 4.78e-110 339
Msa0393820 MtrunA17_Chr1g0195311 56.835 278 114 4 253 527 40 314 3.30e-108 325
Msa0393820 MtrunA17_Chr4g0069891 39.957 463 243 8 92 527 139 593 2.67e-104 325
Msa0393820 MtrunA17_Chr4g0000121 36.078 510 299 9 36 523 49 553 3.70e-101 316
Msa0393820 MtrunA17_Chr1g0192311 39.278 443 243 8 103 523 128 566 4.08e-101 316
Msa0393820 MtrunA17_Chr1g0192281 39.278 443 243 8 103 523 128 566 4.08e-101 316
Msa0393820 MtrunA17_Chr1g0192321 34.953 535 294 14 35 526 59 582 9.38e-100 313
Msa0393820 MtrunA17_Chr1g0192301 37.267 483 270 10 68 523 95 571 2.20e-99 311
Msa0393820 MtrunA17_Chr1g0194091 43.909 353 189 5 182 527 219 569 2.61e-95 301
Msa0393820 MtrunA17_Chr4g0067611 34.087 531 304 12 28 526 55 571 1.12e-94 299
Msa0393820 MtrunA17_Chr3g0129921 35.455 550 296 15 7 516 23 553 3.62e-94 297
Msa0393820 MtrunA17_Chr2g0302001 51.765 255 121 2 273 527 185 437 9.50e-93 290
Msa0393820 MtrunA17_Chr4g0067601 34.034 523 299 12 36 526 63 571 2.50e-92 293
Msa0393820 MtrunA17_Chr1g0194081 38.972 467 254 11 88 527 101 563 5.43e-92 292
Msa0393820 MtrunA17_Chr7g0272151 33.276 580 323 16 1 526 13 582 2.22e-91 291
Msa0393820 MtrunA17_Chr8g0384121 35.619 525 285 15 28 519 52 556 2.90e-91 290
Msa0393820 MtrunA17_Chr2g0295531 32.664 548 323 14 2 524 17 543 4.49e-91 291
Msa0393820 MtrunA17_Chr8g0380581 42.690 342 191 3 184 524 36 373 3.11e-89 279
Msa0393820 MtrunA17_Chr2g0295551 34.334 533 295 12 28 526 52 563 3.35e-87 279
Msa0393820 MtrunA17_Chr7g0270651 36.575 473 274 11 68 527 115 574 2.18e-85 275
Msa0393820 MtrunA17_Chr7g0270661 40.000 395 219 7 140 522 181 569 1.16e-83 270
Msa0393820 MtrunA17_Chr7g0270671 40.000 395 219 7 140 522 181 569 1.16e-83 270
Msa0393820 MtrunA17_Chr2g0301931 45.833 288 150 4 240 527 11 292 4.77e-82 257
Msa0393820 MtrunA17_Chr5g0437831 39.045 356 205 7 178 527 34 383 1.26e-80 256
Msa0393820 MtrunA17_Chr2g0295541 31.104 598 319 14 2 526 17 594 3.06e-80 262
Msa0393820 MtrunA17_Chr7g0270631 35.824 455 270 11 68 513 103 544 3.03e-78 266
Msa0393820 MtrunA17_Chr7g0270631 39.496 357 193 6 193 527 767 1122 7.72e-71 245
Msa0393820 MtrunA17_Chr7g0270691 34.504 484 274 11 54 527 99 549 3.52e-77 253
Msa0393820 MtrunA17_Chr2g0334111 40.952 315 170 6 214 527 24 323 3.00e-74 238
Msa0393820 MtrunA17_Chr7g0268241 37.500 368 209 9 162 527 2 350 1.03e-73 238
Msa0393820 MtrunA17_Chr7g0271381 29.690 549 345 18 1 527 27 556 5.01e-63 215
Msa0393820 MtrunA17_Chr6g0453551 33.660 306 177 6 215 510 6 295 2.90e-55 188
Msa0393820 MtrunA17_Chr6g0487101 35.345 348 190 11 187 516 50 380 5.43e-54 187
Msa0393820 MtrunA17_Chr8g0389771 35.629 334 179 12 197 516 66 377 8.16e-52 181
Msa0393820 MtrunA17_Chr1g0194311 36.593 317 174 8 212 518 71 370 2.17e-51 179
Msa0393820 MtrunA17_Chr8g0391261 56.522 138 59 1 390 527 30 166 5.19e-51 172
Msa0393820 MtrunA17_Chr7g0217941 33.569 283 165 5 217 489 8 277 9.14e-49 171
Msa0393820 MtrunA17_Chr2g0299431 41.841 239 134 5 188 424 26 261 9.15e-45 159
Msa0393820 MtrunA17_Chr6g0466961 35.587 281 154 8 215 489 40 299 5.87e-44 158
Msa0393820 MtrunA17_Chr6g0466951 34.643 280 158 8 215 489 69 328 2.51e-43 157
Msa0393820 MtrunA17_Chr5g0446301 34.091 308 174 9 221 516 67 357 3.82e-43 157
Msa0393820 MtrunA17_Chr8g0391281 34.507 284 157 7 36 297 34 310 8.75e-43 155
Msa0393820 MtrunA17_Chr7g0258341 32.803 314 187 7 215 518 90 389 1.41e-42 156
Msa0393820 MtrunA17_Chr7g0265201 30.081 369 213 11 156 516 54 385 3.35e-42 155
Msa0393820 MtrunA17_Chr4g0070051 31.402 328 194 10 198 516 38 343 3.58e-41 151
Msa0393820 MtrunA17_Chr1g0161731 32.680 306 175 9 199 489 26 315 1.60e-40 149
Msa0393820 MtrunA17_Chr5g0399221 30.380 316 193 8 215 519 63 362 5.67e-40 148
Msa0393820 MtrunA17_Chr2g0294321 30.435 322 195 8 204 516 45 346 6.60e-38 142
Msa0393820 MtrunA17_Chr5g0440871 31.900 279 171 6 211 489 35 294 1.03e-35 135
Msa0393820 MtrunA17_Chr4g0037751 29.464 336 206 9 196 516 42 361 2.78e-35 135
Msa0393820 MtrunA17_Chr5g0420831 29.080 337 206 9 196 516 42 361 1.24e-32 128
Msa0393820 MtrunA17_Chr2g0295851 28.483 323 191 10 204 516 44 336 1.60e-30 121
Msa0393820 MtrunA17_Chr6g0459781 38.012 171 93 4 217 377 15 182 7.16e-30 116
Msa0393820 MtrunA17_Chr8g0351871 30.345 290 174 9 209 489 28 298 2.21e-29 118
Msa0393820 MtrunA17_Chr4g0025841 31.727 249 152 4 211 459 33 263 4.82e-28 113
Msa0393820 MtrunA17_Chr2g0314691 33.500 200 113 5 320 516 19 201 5.58e-26 105
Msa0393820 MtrunA17_Chr5g0437821 37.121 132 82 1 329 459 4 135 7.24e-25 100
Msa0393820 MtrunA17_Chr5g0440901 35.526 152 88 2 308 459 1 142 3.86e-24 98.6
Msa0393820 MtrunA17_Chr7g0265161 34.066 182 87 5 281 457 5 158 3.22e-22 95.9
Msa0393820 MtrunA17_Chr6g0460141 36.429 140 81 4 244 375 5 144 1.06e-18 83.2
Msa0393820 MtrunA17_Chr4g0073911 33.742 163 94 4 244 397 36 193 2.26e-18 84.7
Msa0393820 MtrunA17_Chr5g0440891 32.919 161 100 3 215 375 48 200 1.95e-16 78.2
Msa0393820 MtrunA17_Chr6g0459791 37.302 126 67 3 392 517 4 117 5.60e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0393820 AT3G47400.1 55.792 518 212 8 26 527 78 594 0.0 582
Msa0393820 AT5G51500.1 55.882 510 210 11 29 527 35 540 0.0 579
Msa0393820 AT5G51490.1 55.159 504 211 7 35 527 37 536 0.0 578
Msa0393820 AT2G45220.1 49.231 520 248 10 9 527 7 511 4.01e-173 498
Msa0393820 AT4G00190.1 45.030 493 244 9 36 527 8 474 9.55e-141 414
Msa0393820 AT1G23200.1 42.991 535 244 12 36 527 38 554 4.52e-137 408
Msa0393820 AT1G11580.1 42.831 537 283 11 1 523 27 553 5.61e-134 400
Msa0393820 AT1G11580.2 42.831 537 283 11 1 523 48 574 1.68e-133 400
Msa0393820 AT3G60730.1 45.175 456 213 8 102 527 71 519 1.18e-131 393
Msa0393820 AT5G53370.1 45.354 452 222 7 97 527 138 585 5.82e-129 388
Msa0393820 AT5G53370.2 45.354 452 222 7 97 527 174 621 1.63e-128 388
Msa0393820 AT4G02320.1 43.326 487 241 9 68 527 40 518 5.11e-128 384
Msa0393820 AT3G14310.1 45.895 475 209 9 96 527 123 592 2.14e-126 382
Msa0393820 AT3G43270.1 45.067 446 222 7 102 527 83 525 5.37e-126 379
Msa0393820 AT4G02300.1 44.470 443 223 9 102 527 96 532 8.03e-126 379
Msa0393820 AT1G53830.1 46.087 460 210 8 102 527 132 587 1.67e-124 377
Msa0393820 AT3G49220.1 44.469 452 224 8 97 527 151 596 6.35e-124 376
Msa0393820 AT5G04960.1 41.811 519 263 14 27 525 63 562 7.78e-124 374
Msa0393820 AT3G49220.3 44.469 452 224 8 97 527 196 641 3.37e-123 375
Msa0393820 AT3G59010.1 44.632 475 231 9 69 527 70 528 3.75e-122 369
Msa0393820 AT4G02330.1 39.298 570 290 14 8 527 8 571 6.73e-122 370
Msa0393820 AT4G33220.1 43.107 457 225 7 102 527 71 523 6.83e-122 368
Msa0393820 AT1G02810.1 37.955 577 289 12 10 527 11 577 3.44e-121 368
Msa0393820 AT4G33220.2 51.156 346 166 3 182 527 60 402 3.65e-121 362
Msa0393820 AT2G43050.1 43.671 474 229 12 69 527 66 516 2.58e-118 358
Msa0393820 AT5G20860.2 37.705 549 309 13 1 527 1 538 7.23e-118 358
Msa0393820 AT3G05620.1 46.650 403 193 8 134 527 152 541 9.15e-118 358
Msa0393820 AT3G10710.1 38.121 564 284 14 1 527 26 561 3.69e-116 355
Msa0393820 AT2G47550.1 44.731 427 203 7 132 527 134 558 7.36e-115 351
Msa0393820 AT2G26440.1 38.158 532 282 13 27 527 32 547 1.85e-114 350
Msa0393820 AT5G49180.1 40.206 485 258 10 68 523 85 566 8.30e-113 346
Msa0393820 AT2G26450.1 39.669 484 263 10 58 527 143 611 4.01e-112 346
Msa0393820 AT5G27870.1 40.333 481 261 11 68 527 87 562 3.53e-111 347
Msa0393820 AT3G05610.1 38.716 514 283 11 36 527 62 565 1.33e-110 343
Msa0393820 AT3G27980.1 44.750 400 205 9 135 527 107 497 5.52e-109 334
Msa0393820 AT1G11590.1 38.416 505 282 13 43 527 29 524 4.31e-108 333
Msa0393820 AT4G33230.1 40.583 446 241 9 103 527 164 606 5.10e-108 335
Msa0393820 AT3G10720.2 37.058 537 289 9 36 527 83 615 4.40e-107 333
Msa0393820 AT4G03930.1 37.849 502 285 12 45 527 31 524 6.97e-107 329
Msa0393820 AT3G06830.1 39.421 449 243 10 103 525 121 566 2.78e-106 329
Msa0393820 AT5G04970.1 35.940 537 295 9 36 527 88 620 9.98e-105 327
Msa0393820 AT1G53840.1 36.122 526 289 12 29 521 70 581 9.75e-103 321
Msa0393820 AT3G10720.1 55.172 261 115 2 267 527 1 259 2.77e-99 301
Msa0393820 AT3G14300.1 37.428 521 279 12 24 512 448 953 1.50e-97 317
Msa0393820 AT5G20860.1 39.857 419 206 8 98 506 107 489 3.43e-96 301
Msa0393820 AT4G15980.1 43.333 360 196 6 171 525 344 700 4.28e-94 301
Msa0393820 AT4G15980.2 43.333 360 196 6 171 525 354 710 7.08e-94 301
Msa0393820 AT5G09760.1 48.161 299 141 5 209 494 235 532 4.36e-85 274
Msa0393820 AT5G09760.2 48.161 299 141 5 209 494 261 558 1.01e-84 273
Msa0393820 AT1G11370.1 49.798 247 123 1 212 458 43 288 1.85e-83 261
Msa0393820 AT5G64640.1 43.731 327 160 7 209 519 283 601 3.52e-81 265
Msa0393820 AT2G47030.1 39.326 356 198 6 186 527 237 588 3.92e-74 246
Msa0393820 AT2G47040.1 38.527 353 202 6 186 527 247 595 1.35e-72 242
Msa0393820 AT3G62170.1 38.440 359 191 9 193 527 236 588 9.47e-70 234
Msa0393820 AT2G21610.1 33.993 303 178 7 215 516 51 332 1.90e-51 179
Msa0393820 AT2G21610.2 33.993 303 178 7 215 516 56 337 3.24e-51 179
Msa0393820 AT2G36710.1 33.856 319 188 8 212 521 86 390 1.26e-50 179
Msa0393820 AT2G36700.1 34.591 318 185 9 207 516 31 333 1.56e-50 176
Msa0393820 AT5G19730.1 31.492 362 203 11 178 516 42 381 2.64e-50 177
Msa0393820 AT3G29090.1 33.684 285 162 6 217 489 9 278 9.39e-49 171
Msa0393820 AT1G05310.1 32.698 315 182 7 215 516 91 388 9.53e-45 162
Msa0393820 AT3G17060.1 31.269 323 191 8 204 516 35 336 6.03e-43 156
Msa0393820 AT5G47500.1 29.697 330 201 8 200 517 48 358 1.75e-40 150
Msa0393820 AT5G07430.1 29.972 357 215 11 174 516 20 355 4.43e-40 149
Msa0393820 AT1G44980.1 37.991 229 135 5 157 379 14 241 5.49e-39 142
Msa0393820 AT5G55590.1 33.333 318 183 9 211 516 78 378 3.35e-38 144
Msa0393820 AT3G24130.1 32.168 286 168 7 215 489 34 304 3.81e-38 143
Msa0393820 AT5G07420.1 30.383 339 203 10 193 516 35 355 1.92e-37 142
Msa0393820 AT5G55590.2 34.866 261 145 6 211 459 78 325 2.07e-37 141
Msa0393820 AT5G18990.1 30.303 297 178 8 204 489 21 299 1.03e-33 130
Msa0393820 AT5G61680.1 27.988 343 213 10 190 516 34 358 8.89e-33 129
Msa0393820 AT5G07410.1 29.167 336 206 11 195 516 38 355 1.03e-32 129
Msa0393820 AT1G69940.1 28.177 362 226 12 171 516 12 355 6.10e-32 126
Msa0393820 AT5G26810.1 29.252 294 170 8 215 489 34 308 3.20e-31 124
Msa0393820 AT2G19150.1 27.607 326 208 8 207 523 33 339 3.19e-30 121
Msa0393820 AT2G19150.2 29.389 262 161 6 207 459 33 279 1.09e-27 112
Msa0393820 AT2G47280.1 28.819 288 181 7 211 489 31 303 1.56e-27 113
Msa0393820 AT3G49220.2 30.631 222 128 7 97 297 196 412 7.37e-24 104

Find 104 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCCACAATTGTCAAATT+AGG 0.096980 3_2:-7957502 Msa0393820:CDS
TCGTACCTTTGTTATGTTTC+AGG 0.180730 3_2:+7958553 None:intergenic
TCATGCATAGAAAACCATTT+TGG 0.206714 3_2:+7958396 None:intergenic
GCATGGTAAGAGCTTGGTTT+AGG 0.232125 3_2:+7958880 None:intergenic
ACTTCTAGAACTTGTTATTA+TGG 0.232263 3_2:+7958149 None:intergenic
GCTCAAGACACATTGTATTA+TGG 0.240578 3_2:-7957329 Msa0393820:CDS
ACGGTTGCTGGACTCCTTGC+TGG 0.264051 3_2:-7957209 Msa0393820:CDS
ACCACAAGATTGTACTTTAC+TGG 0.266090 3_2:+7958348 None:intergenic
ATTCCACAATTGTCAAATTA+GGG 0.271376 3_2:-7957501 Msa0393820:CDS
AAGAAGGGTCATTTCCAAAA+TGG 0.284001 3_2:-7958410 Msa0393820:CDS
TATCGACAATGCTTCATCTA+TGG 0.297382 3_2:-7957662 Msa0393820:CDS
GCATCAAAGTTTACGGTTGC+TGG 0.302438 3_2:-7957221 Msa0393820:CDS
GGAATGAAATTCCAGTGTTT+TGG 0.313831 3_2:+7957519 None:intergenic
CATGGTAAGAGCTTGGTTTA+GGG 0.317299 3_2:+7958881 None:intergenic
CATTTAAATTTAGGTATTGA+TGG 0.320933 3_2:-7957845 Msa0393820:intron
TGACAAGTACAAAACCTTCT+TGG 0.322544 3_2:-7957453 Msa0393820:CDS
TCAAACATAGAGTTGAATTC+AGG 0.324256 3_2:-7958923 Msa0393820:CDS
GATCAAAGACCAGAAGTAAA+TGG 0.330015 3_2:+7957158 None:intergenic
CATCTCAACCGCACACTTGA+AGG 0.335481 3_2:-7958759 Msa0393820:CDS
GGCACTGTAGACTTCATCTT+TGG 0.336037 3_2:-7957641 Msa0393820:CDS
AAAGGAAGCATCAAAGTTTA+CGG 0.343984 3_2:-7957228 Msa0393820:CDS
GTAAACTTTGATGCTTCCTT+TGG 0.345344 3_2:+7957230 None:intergenic
ACTACTGTGCCATTTACTTC+TGG 0.356059 3_2:-7957167 Msa0393820:CDS
CAACAGCAAATAGAGTAAAA+TGG 0.362307 3_2:-7957277 Msa0393820:CDS
GAATGGGTCACCACGACCTT+GGG 0.383001 3_2:+7957541 None:intergenic
GACAAGTACAAAACCTTCTT+GGG 0.387883 3_2:-7957452 Msa0393820:CDS
TTTCAGGAAATGCATATTGA+TGG 0.392962 3_2:+7958569 None:intergenic
TGTGTGGACCGGCAGTATTT+TGG 0.404472 3_2:+7957792 None:intergenic
AGCCATGTTTGTGCATCATT+TGG 0.409326 3_2:+7958708 None:intergenic
CCAATGTCACTGAGATGTTA+AGG 0.412297 3_2:-7958602 Msa0393820:CDS
GCAACAATATTCAAGAGTTA+TGG 0.414279 3_2:-7957420 Msa0393820:CDS
AATTGAAATATGGCAATCAT+TGG 0.415279 3_2:-7959104 None:intergenic
TATGGTGAATATGAAAACTA+TGG 0.416977 3_2:-7957311 Msa0393820:CDS
TCAGTGCATAAAACGGTTCA+TGG 0.448897 3_2:-7958816 Msa0393820:CDS
GGAATGGGTCACCACGACCT+TGG 0.450335 3_2:+7957540 None:intergenic
AAACCTTCTTGGGAAGGCCT+TGG 0.458014 3_2:-7957442 Msa0393820:CDS
GTGGTAGCAAAAGATGGTTC+TGG 0.463626 3_2:-7958330 Msa0393820:CDS
CAGCCCTAATTTGACAATTG+TGG 0.474354 3_2:+7957498 None:intergenic
ATGTAGTGTTTGCATGGCTT+AGG 0.476541 3_2:+7958972 None:intergenic
CTTCCTCAAGCAACATAGAT+TGG 0.484124 3_2:-7959016 Msa0393820:CDS
AGCTTGACCCTTGTGTGGAC+CGG 0.488154 3_2:+7957781 None:intergenic
GGGATATCAAGACACTTTGA+TGG 0.491175 3_2:-7957705 Msa0393820:CDS
ATTGTACTTTACTGGAGACT+TGG 0.493638 3_2:+7958356 None:intergenic
AATATTGAAACATGTAAAAG+TGG 0.495425 3_2:-7958669 Msa0393820:CDS
TTTGTGATACATGTTAAGAA+AGG 0.500212 3_2:-7958246 Msa0393820:CDS
CAAACATAGAGTTGAATTCA+GGG 0.504754 3_2:-7958922 Msa0393820:CDS
TCAATAGCCTCATCAAGAAA+AGG 0.505321 3_2:-7959041 Msa0393820:CDS
ATGATCACGGCCCAAGGTCG+TGG 0.507704 3_2:-7957551 Msa0393820:CDS
CTATTTGCTGTTGATGAACC+AGG 0.508404 3_2:+7957287 None:intergenic
TTGCCAAGGCCTTCCCAAGA+AGG 0.511374 3_2:+7957439 None:intergenic
GGGCCGTGATCATGTTAGCT+TGG 0.512801 3_2:+7957561 None:intergenic
TGTGTTATGTAGTGTTTGCA+TGG 0.515684 3_2:+7958966 None:intergenic
CAGAGAGATCGGAGGCTGAT+CGG 0.519200 3_2:+7957750 None:intergenic
CCTTAACATCTCAGTGACAT+TGG 0.524868 3_2:+7958602 None:intergenic
CATCTTTGGCAACGCTGCAG+TGG 0.532133 3_2:-7957627 Msa0393820:CDS
AATCTTGTGGTAGCAAAAGA+TGG 0.533550 3_2:-7958336 Msa0393820:CDS
TTCGCAAGAAAACCTTTGGA+TGG 0.535998 3_2:-7957584 Msa0393820:CDS
ACTCTTGAATATTGTTGCCA+AGG 0.536658 3_2:+7957425 None:intergenic
ACCCCATGGAGACCAACCTA+GGG 0.538985 3_2:+7957364 None:intergenic
TCACTTACAGAAACAAAAGA+AGG 0.542875 3_2:-7958426 Msa0393820:intron
TGCTGTTGCAGAGCTATAAG+TGG 0.543731 3_2:+7958110 None:intergenic
AACATTATGCTGGTTGGTGA+TGG 0.543858 3_2:-7958183 Msa0393820:CDS
GCAAATAGAGTAAAATGGCC+TGG 0.544601 3_2:-7957272 Msa0393820:CDS
CAATCTATGTTGCTTGAGGA+AGG 0.551632 3_2:+7959017 None:intergenic
TGTTTGCATGGCTTAGGATG+TGG 0.552680 3_2:+7958978 None:intergenic
AAATACTGCCGGTCCACACA+AGG 0.553589 3_2:-7957789 Msa0393820:CDS
AAATTCATCAGTGCATAAAA+CGG 0.555036 3_2:-7958823 Msa0393820:CDS
ACTTATAGCTCTGCAACAGC+AGG 0.557059 3_2:-7958108 Msa0393820:intron
AGTTCTAGAAGTGTTCAAGA+TGG 0.562676 3_2:-7958138 Msa0393820:CDS
CACCAAATGATGCACAAACA+TGG 0.565228 3_2:-7958710 Msa0393820:CDS
CCTTGCTGGACCAACGTGGT+TGG 0.568742 3_2:-7957195 Msa0393820:CDS
CCTCAAGCAACATAGATTGG+TGG 0.569379 3_2:-7959013 Msa0393820:CDS
ATGTTAGCTTGGCCATCCAA+AGG 0.577954 3_2:+7957572 None:intergenic
CCGGTAAAAGACAGAGAGAT+CGG 0.579063 3_2:+7957739 None:intergenic
TCATAATGATAACATTATGC+TGG 0.579993 3_2:-7958193 Msa0393820:CDS
AATGATAACATTATGCTGGT+TGG 0.589997 3_2:-7958189 Msa0393820:CDS
CTAAGAGAAAATACAAGACA+AGG 0.594762 3_2:-7958269 Msa0393820:CDS
TCCACACAAGGGTCAAGCTG+TGG 0.596715 3_2:-7957777 Msa0393820:CDS
GCCACAGCTTGACCCTTGTG+TGG 0.600879 3_2:+7957776 None:intergenic
CACCCCATGGAGACCAACCT+AGG 0.600934 3_2:+7957363 None:intergenic
CCACCAATCTATGTTGCTTG+AGG 0.601277 3_2:+7959013 None:intergenic
GCTAACATGATCACGGCCCA+AGG 0.605067 3_2:-7957557 Msa0393820:CDS
TCCAGTAAAGTACAATCTTG+TGG 0.606248 3_2:-7958349 Msa0393820:CDS
ATAACCTTCCAAAATACTGC+CGG 0.608318 3_2:-7957800 Msa0393820:CDS
TTTGTTATCACATGATAACC+AGG 0.610464 3_2:+7957254 None:intergenic
GGTGACCCATTCCAAAACAC+TGG 0.613436 3_2:-7957530 Msa0393820:CDS
TGTTTATAGAGAGAACATTG+AGG 0.615615 3_2:-7958223 Msa0393820:CDS
TGTTTAAGCCTTCAAGTGTG+CGG 0.618251 3_2:+7958751 None:intergenic
GCAAAATCAGTGTCACCCCA+TGG 0.619580 3_2:+7957350 None:intergenic
TCATGTGATAACAAATCCAA+AGG 0.625043 3_2:-7957246 Msa0393820:CDS
CCAACCACGTTGGTCCAGCA+AGG 0.629318 3_2:+7957195 None:intergenic
AGTACAAAACCTTCTTGGGA+AGG 0.639051 3_2:-7957448 Msa0393820:CDS
TGGCCAAGCTAACATGATCA+CGG 0.640356 3_2:-7957564 Msa0393820:CDS
CCCCTAGGTTGGTCTCCATG+GGG 0.648245 3_2:-7957365 Msa0393820:CDS
CACTTACAGAAACAAAAGAA+GGG 0.648620 3_2:-7958425 Msa0393820:intron
GAATATGAAAACTATGGACC+TGG 0.667216 3_2:-7957305 Msa0393820:CDS
AATACTGCCGGTCCACACAA+GGG 0.680140 3_2:-7957788 Msa0393820:CDS
CCCCATGGAGACCAACCTAG+GGG 0.685055 3_2:+7957365 None:intergenic
CATTTCCTGAAACATAACAA+AGG 0.694892 3_2:-7958558 Msa0393820:intron
CCCATGGAGACCAACCTAGG+GGG 0.713906 3_2:+7957366 None:intergenic
GTAGTTGTTGCCAACCACGT+TGG 0.739916 3_2:+7957185 None:intergenic
GACTCCTTGCTGGACCAACG+TGG 0.741755 3_2:-7957199 Msa0393820:CDS
GTAAAAGACAGAGAGATCGG+AGG 0.749268 3_2:+7957742 None:intergenic
GATATCCCGATATAGCACAC+CGG 0.753319 3_2:+7957720 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAAAATTTTATAATAAGAT+AGG - chr3_2:7958306-7958325 Msa0393820:CDS 10.0%
!! TATAATATTTAAATTATCCT+TGG - chr3_2:7958331-7958350 Msa0393820:CDS 10.0%
!! ATAATATTTAAATTATCCTT+GGG - chr3_2:7958332-7958351 Msa0393820:CDS 10.0%
!! TTTAAAAAAATAATTACTCT+TGG - chr3_2:7958385-7958404 Msa0393820:CDS 10.0%
!!! CTAAAATTTTATAATAAGAT+AGG - chr3_2:7958306-7958325 Msa0393820:CDS 10.0%
!! TATAATATTTAAATTATCCT+TGG - chr3_2:7958331-7958350 Msa0393820:CDS 10.0%
!! ATAATATTTAAATTATCCTT+GGG - chr3_2:7958332-7958351 Msa0393820:CDS 10.0%
!! TTTAAAAAAATAATTACTCT+TGG - chr3_2:7958385-7958404 Msa0393820:CDS 10.0%
!! TAATATTTAAATTATCCTTG+GGG - chr3_2:7958333-7958352 Msa0393820:CDS 15.0%
!! TAATATTTAAATTATCCTTG+GGG - chr3_2:7958333-7958352 Msa0393820:CDS 15.0%
!! AATATTGAAACATGTAAAAG+TGG - chr3_2:7957586-7957605 Msa0393820:CDS 20.0%
!! ACAAGAAAATAAAAAGAGAA+AGG + chr3_2:7958193-7958212 None:intergenic 20.0%
!!! CATTTAAATTTAGGTATTGA+TGG - chr3_2:7958410-7958429 Msa0393820:CDS 20.0%
!!! TTGCGAAAATTTTACAATTT+TGG + chr3_2:7958658-7958677 None:intergenic 20.0%
!! AATATTGAAACATGTAAAAG+TGG - chr3_2:7957586-7957605 Msa0393820:CDS 20.0%
!! ACAAGAAAATAAAAAGAGAA+AGG + chr3_2:7958193-7958212 None:intergenic 20.0%
!!! CATTTAAATTTAGGTATTGA+TGG - chr3_2:7958410-7958429 Msa0393820:CDS 20.0%
!!! TTGCGAAAATTTTACAATTT+TGG + chr3_2:7958658-7958677 None:intergenic 20.0%
! AAATTCATCAGTGCATAAAA+CGG - chr3_2:7957432-7957451 Msa0393820:CDS 25.0%
! CTAATCTTAATCGAAATTTC+TGG - chr3_2:7957802-7957821 Msa0393820:CDS 25.0%
! TTTGTGATACATGTTAAGAA+AGG - chr3_2:7958009-7958028 Msa0393820:intron 25.0%
! TCATAATGATAACATTATGC+TGG - chr3_2:7958062-7958081 Msa0393820:intron 25.0%
!!! ACTTCTAGAACTTGTTATTA+TGG + chr3_2:7958109-7958128 None:intergenic 25.0%
! AAATAAAAAGAGAAAGGAGT+TGG + chr3_2:7958187-7958206 None:intergenic 25.0%
! TATCTTCTATGTTCAATAGT+TGG + chr3_2:7958242-7958261 None:intergenic 25.0%
! CTCTTGGATCATTTAAATTT+AGG - chr3_2:7958401-7958420 Msa0393820:CDS 25.0%
! ATTCCACAATTGTCAAATTA+GGG - chr3_2:7958754-7958773 Msa0393820:CDS 25.0%
!!! TATGGTGATGAAAACTTTTA+TGG - chr3_2:7958853-7958872 Msa0393820:CDS 25.0%
! TATGGTGAATATGAAAACTA+TGG - chr3_2:7958944-7958963 Msa0393820:CDS 25.0%
! AAATTCATCAGTGCATAAAA+CGG - chr3_2:7957432-7957451 Msa0393820:CDS 25.0%
! CTAATCTTAATCGAAATTTC+TGG - chr3_2:7957802-7957821 Msa0393820:CDS 25.0%
! TTTGTGATACATGTTAAGAA+AGG - chr3_2:7958009-7958028 Msa0393820:intron 25.0%
! TCATAATGATAACATTATGC+TGG - chr3_2:7958062-7958081 Msa0393820:intron 25.0%
!!! ACTTCTAGAACTTGTTATTA+TGG + chr3_2:7958109-7958128 None:intergenic 25.0%
! AAATAAAAAGAGAAAGGAGT+TGG + chr3_2:7958187-7958206 None:intergenic 25.0%
! TATCTTCTATGTTCAATAGT+TGG + chr3_2:7958242-7958261 None:intergenic 25.0%
! CTCTTGGATCATTTAAATTT+AGG - chr3_2:7958401-7958420 Msa0393820:CDS 25.0%
! ATTCCACAATTGTCAAATTA+GGG - chr3_2:7958754-7958773 Msa0393820:CDS 25.0%
!!! TATGGTGATGAAAACTTTTA+TGG - chr3_2:7958853-7958872 Msa0393820:CDS 25.0%
! TATGGTGAATATGAAAACTA+TGG - chr3_2:7958944-7958963 Msa0393820:CDS 25.0%
TCAAACATAGAGTTGAATTC+AGG - chr3_2:7957332-7957351 Msa0393820:CDS 30.0%
CAAACATAGAGTTGAATTCA+GGG - chr3_2:7957333-7957352 Msa0393820:CDS 30.0%
TTTCAGGAAATGCATATTGA+TGG + chr3_2:7957689-7957708 None:intergenic 30.0%
CATTTCCTGAAACATAACAA+AGG - chr3_2:7957697-7957716 Msa0393820:CDS 30.0%
!!! TCTTTTGTTTCTGTAAGTGA+CGG + chr3_2:7957829-7957848 None:intergenic 30.0%
TCACTTACAGAAACAAAAGA+AGG - chr3_2:7957829-7957848 Msa0393820:CDS 30.0%
CACTTACAGAAACAAAAGAA+GGG - chr3_2:7957830-7957849 Msa0393820:CDS 30.0%
! TCATGCATAGAAAACCATTT+TGG + chr3_2:7957862-7957881 None:intergenic 30.0%
! AATGGTTTTCTATGCATGAA+AGG - chr3_2:7957863-7957882 Msa0393820:intron 30.0%
CTAAGAGAAAATACAAGACA+AGG - chr3_2:7957986-7958005 Msa0393820:intron 30.0%
TGTTTATAGAGAGAACATTG+AGG - chr3_2:7958032-7958051 Msa0393820:intron 30.0%
AATGATAACATTATGCTGGT+TGG - chr3_2:7958066-7958085 Msa0393820:intron 30.0%
! AATTTTCGCAAGAAAACCTT+TGG - chr3_2:7958667-7958686 Msa0393820:CDS 30.0%
!!! AAATTCCAGTGTTTTGGAAT+GGG + chr3_2:7958733-7958752 None:intergenic 30.0%
CATTCCACAATTGTCAAATT+AGG - chr3_2:7958753-7958772 Msa0393820:CDS 30.0%
GCAACAATATTCAAGAGTTA+TGG - chr3_2:7958835-7958854 Msa0393820:CDS 30.0%
CAACAGCAAATAGAGTAAAA+TGG - chr3_2:7958978-7958997 Msa0393820:CDS 30.0%
! TTTGTTATCACATGATAACC+AGG + chr3_2:7959004-7959023 None:intergenic 30.0%
TCATGTGATAACAAATCCAA+AGG - chr3_2:7959009-7959028 Msa0393820:CDS 30.0%
!! AAAGGAAGCATCAAAGTTTA+CGG - chr3_2:7959027-7959046 Msa0393820:CDS 30.0%
TCAAACATAGAGTTGAATTC+AGG - chr3_2:7957332-7957351 Msa0393820:CDS 30.0%
CAAACATAGAGTTGAATTCA+GGG - chr3_2:7957333-7957352 Msa0393820:CDS 30.0%
TTTCAGGAAATGCATATTGA+TGG + chr3_2:7957689-7957708 None:intergenic 30.0%
CATTTCCTGAAACATAACAA+AGG - chr3_2:7957697-7957716 Msa0393820:CDS 30.0%
!!! TCTTTTGTTTCTGTAAGTGA+CGG + chr3_2:7957829-7957848 None:intergenic 30.0%
TCACTTACAGAAACAAAAGA+AGG - chr3_2:7957829-7957848 Msa0393820:CDS 30.0%
CACTTACAGAAACAAAAGAA+GGG - chr3_2:7957830-7957849 Msa0393820:CDS 30.0%
! TCATGCATAGAAAACCATTT+TGG + chr3_2:7957862-7957881 None:intergenic 30.0%
! AATGGTTTTCTATGCATGAA+AGG - chr3_2:7957863-7957882 Msa0393820:intron 30.0%
CTAAGAGAAAATACAAGACA+AGG - chr3_2:7957986-7958005 Msa0393820:intron 30.0%
TGTTTATAGAGAGAACATTG+AGG - chr3_2:7958032-7958051 Msa0393820:intron 30.0%
AATGATAACATTATGCTGGT+TGG - chr3_2:7958066-7958085 Msa0393820:intron 30.0%
! AATTTTCGCAAGAAAACCTT+TGG - chr3_2:7958667-7958686 Msa0393820:CDS 30.0%
!!! AAATTCCAGTGTTTTGGAAT+GGG + chr3_2:7958733-7958752 None:intergenic 30.0%
CATTCCACAATTGTCAAATT+AGG - chr3_2:7958753-7958772 Msa0393820:CDS 30.0%
GCAACAATATTCAAGAGTTA+TGG - chr3_2:7958835-7958854 Msa0393820:CDS 30.0%
CAACAGCAAATAGAGTAAAA+TGG - chr3_2:7958978-7958997 Msa0393820:CDS 30.0%
! TTTGTTATCACATGATAACC+AGG + chr3_2:7959004-7959023 None:intergenic 30.0%
TCATGTGATAACAAATCCAA+AGG - chr3_2:7959009-7959028 Msa0393820:CDS 30.0%
!! AAAGGAAGCATCAAAGTTTA+CGG - chr3_2:7959027-7959046 Msa0393820:CDS 30.0%
TCAATAGCCTCATCAAGAAA+AGG - chr3_2:7957214-7957233 Msa0393820:CDS 35.0%
TGTGTTATGTAGTGTTTGCA+TGG + chr3_2:7957292-7957311 None:intergenic 35.0%
! TCGTACCTTTGTTATGTTTC+AGG + chr3_2:7957705-7957724 None:intergenic 35.0%
AAGAAGGGTCATTTCCAAAA+TGG - chr3_2:7957845-7957864 Msa0393820:intron 35.0%
ATTGTACTTTACTGGAGACT+TGG + chr3_2:7957902-7957921 None:intergenic 35.0%
TCCAGTAAAGTACAATCTTG+TGG - chr3_2:7957906-7957925 Msa0393820:intron 35.0%
ACCACAAGATTGTACTTTAC+TGG + chr3_2:7957910-7957929 None:intergenic 35.0%
AATCTTGTGGTAGCAAAAGA+TGG - chr3_2:7957919-7957938 Msa0393820:intron 35.0%
!! AGTTCTAGAAGTGTTCAAGA+TGG - chr3_2:7958117-7958136 Msa0393820:CDS 35.0%
TTGAATGTAAAAAAGCCCCA+AGG + chr3_2:7958351-7958370 None:intergenic 35.0%
ATAACCTTCCAAAATACTGC+CGG - chr3_2:7958455-7958474 Msa0393820:intron 35.0%
TATCGACAATGCTTCATCTA+TGG - chr3_2:7958593-7958612 Msa0393820:CDS 35.0%
!!! GAAATTCCAGTGTTTTGGAA+TGG + chr3_2:7958734-7958753 None:intergenic 35.0%
! GGAATGAAATTCCAGTGTTT+TGG + chr3_2:7958739-7958758 None:intergenic 35.0%
! GTTTTGTACTTGTCAACAAC+AGG + chr3_2:7958797-7958816 None:intergenic 35.0%
TGACAAGTACAAAACCTTCT+TGG - chr3_2:7958802-7958821 Msa0393820:CDS 35.0%
GACAAGTACAAAACCTTCTT+GGG - chr3_2:7958803-7958822 Msa0393820:CDS 35.0%
ACTCTTGAATATTGTTGCCA+AGG + chr3_2:7958833-7958852 None:intergenic 35.0%
GCTCAAGACACATTGTATTA+TGG - chr3_2:7958926-7958945 Msa0393820:CDS 35.0%
GAATATGAAAACTATGGACC+TGG - chr3_2:7958950-7958969 Msa0393820:CDS 35.0%
GTAAACTTTGATGCTTCCTT+TGG + chr3_2:7959028-7959047 None:intergenic 35.0%
TCAATAGCCTCATCAAGAAA+AGG - chr3_2:7957214-7957233 Msa0393820:CDS 35.0%
TGTGTTATGTAGTGTTTGCA+TGG + chr3_2:7957292-7957311 None:intergenic 35.0%
! TCGTACCTTTGTTATGTTTC+AGG + chr3_2:7957705-7957724 None:intergenic 35.0%
AAGAAGGGTCATTTCCAAAA+TGG - chr3_2:7957845-7957864 Msa0393820:intron 35.0%
ATTGTACTTTACTGGAGACT+TGG + chr3_2:7957902-7957921 None:intergenic 35.0%
TCCAGTAAAGTACAATCTTG+TGG - chr3_2:7957906-7957925 Msa0393820:intron 35.0%
ACCACAAGATTGTACTTTAC+TGG + chr3_2:7957910-7957929 None:intergenic 35.0%
AATCTTGTGGTAGCAAAAGA+TGG - chr3_2:7957919-7957938 Msa0393820:intron 35.0%
!! AGTTCTAGAAGTGTTCAAGA+TGG - chr3_2:7958117-7958136 Msa0393820:CDS 35.0%
TTGAATGTAAAAAAGCCCCA+AGG + chr3_2:7958351-7958370 None:intergenic 35.0%
ATAACCTTCCAAAATACTGC+CGG - chr3_2:7958455-7958474 Msa0393820:intron 35.0%
TATCGACAATGCTTCATCTA+TGG - chr3_2:7958593-7958612 Msa0393820:CDS 35.0%
!!! GAAATTCCAGTGTTTTGGAA+TGG + chr3_2:7958734-7958753 None:intergenic 35.0%
! GGAATGAAATTCCAGTGTTT+TGG + chr3_2:7958739-7958758 None:intergenic 35.0%
! GTTTTGTACTTGTCAACAAC+AGG + chr3_2:7958797-7958816 None:intergenic 35.0%
TGACAAGTACAAAACCTTCT+TGG - chr3_2:7958802-7958821 Msa0393820:CDS 35.0%
GACAAGTACAAAACCTTCTT+GGG - chr3_2:7958803-7958822 Msa0393820:CDS 35.0%
ACTCTTGAATATTGTTGCCA+AGG + chr3_2:7958833-7958852 None:intergenic 35.0%
GCTCAAGACACATTGTATTA+TGG - chr3_2:7958926-7958945 Msa0393820:CDS 35.0%
GAATATGAAAACTATGGACC+TGG - chr3_2:7958950-7958969 Msa0393820:CDS 35.0%
GTAAACTTTGATGCTTCCTT+TGG + chr3_2:7959028-7959047 None:intergenic 35.0%
! CAATCTATGTTGCTTGAGGA+AGG + chr3_2:7957241-7957260 None:intergenic 40.0%
CTTCCTCAAGCAACATAGAT+TGG - chr3_2:7957239-7957258 Msa0393820:CDS 40.0%
ATGTAGTGTTTGCATGGCTT+AGG + chr3_2:7957286-7957305 None:intergenic 40.0%
CATGGTAAGAGCTTGGTTTA+GGG + chr3_2:7957377-7957396 None:intergenic 40.0%
! CTTTTTGCATGGTAAGAGCT+TGG + chr3_2:7957384-7957403 None:intergenic 40.0%
! TTCTTGTGCGTCTTTTTGCA+TGG + chr3_2:7957395-7957414 None:intergenic 40.0%
TCAGTGCATAAAACGGTTCA+TGG - chr3_2:7957439-7957458 Msa0393820:CDS 40.0%
TGTTTAAGCCTTCAAGTGTG+CGG + chr3_2:7957507-7957526 None:intergenic 40.0%
CACCAAATGATGCACAAACA+TGG - chr3_2:7957545-7957564 Msa0393820:CDS 40.0%
AGCCATGTTTGTGCATCATT+TGG + chr3_2:7957550-7957569 None:intergenic 40.0%
CCTTAACATCTCAGTGACAT+TGG + chr3_2:7957656-7957675 None:intergenic 40.0%
CCAATGTCACTGAGATGTTA+AGG - chr3_2:7957653-7957672 Msa0393820:CDS 40.0%
!! AACATTATGCTGGTTGGTGA+TGG - chr3_2:7958072-7958091 Msa0393820:intron 40.0%
! CTTTTACCGGTGTGCTATAT+CGG - chr3_2:7958529-7958548 Msa0393820:intron 40.0%
! TTTTACCGGTGTGCTATATC+GGG - chr3_2:7958530-7958549 Msa0393820:intron 40.0%
GGGATATCAAGACACTTTGA+TGG - chr3_2:7958550-7958569 Msa0393820:intron 40.0%
TTCGCAAGAAAACCTTTGGA+TGG - chr3_2:7958671-7958690 Msa0393820:CDS 40.0%
CAGCCCTAATTTGACAATTG+TGG + chr3_2:7958760-7958779 None:intergenic 40.0%
AGTACAAAACCTTCTTGGGA+AGG - chr3_2:7958807-7958826 Msa0393820:CDS 40.0%
!! CTATTTGCTGTTGATGAACC+AGG + chr3_2:7958971-7958990 None:intergenic 40.0%
GCAAATAGAGTAAAATGGCC+TGG - chr3_2:7958983-7959002 Msa0393820:CDS 40.0%
!! ACTACTGTGCCATTTACTTC+TGG - chr3_2:7959088-7959107 Msa0393820:CDS 40.0%
! CAATCTATGTTGCTTGAGGA+AGG + chr3_2:7957241-7957260 None:intergenic 40.0%
CTTCCTCAAGCAACATAGAT+TGG - chr3_2:7957239-7957258 Msa0393820:CDS 40.0%
ATGTAGTGTTTGCATGGCTT+AGG + chr3_2:7957286-7957305 None:intergenic 40.0%
CATGGTAAGAGCTTGGTTTA+GGG + chr3_2:7957377-7957396 None:intergenic 40.0%
! CTTTTTGCATGGTAAGAGCT+TGG + chr3_2:7957384-7957403 None:intergenic 40.0%
! TTCTTGTGCGTCTTTTTGCA+TGG + chr3_2:7957395-7957414 None:intergenic 40.0%
TCAGTGCATAAAACGGTTCA+TGG - chr3_2:7957439-7957458 Msa0393820:CDS 40.0%
TGTTTAAGCCTTCAAGTGTG+CGG + chr3_2:7957507-7957526 None:intergenic 40.0%
CACCAAATGATGCACAAACA+TGG - chr3_2:7957545-7957564 Msa0393820:CDS 40.0%
AGCCATGTTTGTGCATCATT+TGG + chr3_2:7957550-7957569 None:intergenic 40.0%
CCTTAACATCTCAGTGACAT+TGG + chr3_2:7957656-7957675 None:intergenic 40.0%
CCAATGTCACTGAGATGTTA+AGG - chr3_2:7957653-7957672 Msa0393820:CDS 40.0%
!! AACATTATGCTGGTTGGTGA+TGG - chr3_2:7958072-7958091 Msa0393820:intron 40.0%
! CTTTTACCGGTGTGCTATAT+CGG - chr3_2:7958529-7958548 Msa0393820:intron 40.0%
! TTTTACCGGTGTGCTATATC+GGG - chr3_2:7958530-7958549 Msa0393820:intron 40.0%
GGGATATCAAGACACTTTGA+TGG - chr3_2:7958550-7958569 Msa0393820:intron 40.0%
TTCGCAAGAAAACCTTTGGA+TGG - chr3_2:7958671-7958690 Msa0393820:CDS 40.0%
CAGCCCTAATTTGACAATTG+TGG + chr3_2:7958760-7958779 None:intergenic 40.0%
AGTACAAAACCTTCTTGGGA+AGG - chr3_2:7958807-7958826 Msa0393820:CDS 40.0%
!! CTATTTGCTGTTGATGAACC+AGG + chr3_2:7958971-7958990 None:intergenic 40.0%
GCAAATAGAGTAAAATGGCC+TGG - chr3_2:7958983-7959002 Msa0393820:CDS 40.0%
!! ACTACTGTGCCATTTACTTC+TGG - chr3_2:7959088-7959107 Msa0393820:CDS 40.0%
! GGAAGGTCCTTTTCTTGATG+AGG + chr3_2:7957224-7957243 None:intergenic 45.0%
! CCACCAATCTATGTTGCTTG+AGG + chr3_2:7957245-7957264 None:intergenic 45.0%
CCTCAAGCAACATAGATTGG+TGG - chr3_2:7957242-7957261 Msa0393820:CDS 45.0%
TGTTTGCATGGCTTAGGATG+TGG + chr3_2:7957280-7957299 None:intergenic 45.0%
GCATGGTAAGAGCTTGGTTT+AGG + chr3_2:7957378-7957397 None:intergenic 45.0%
GTGGTAGCAAAAGATGGTTC+TGG - chr3_2:7957925-7957944 Msa0393820:intron 45.0%
TGCTGTTGCAGAGCTATAAG+TGG + chr3_2:7958148-7958167 None:intergenic 45.0%
! ACTTATAGCTCTGCAACAGC+AGG - chr3_2:7958147-7958166 Msa0393820:CDS 45.0%
GTAAAAGACAGAGAGATCGG+AGG + chr3_2:7958516-7958535 None:intergenic 45.0%
CCGGTAAAAGACAGAGAGAT+CGG + chr3_2:7958519-7958538 None:intergenic 45.0%
! CCGATCTCTCTGTCTTTTAC+CGG - chr3_2:7958516-7958535 Msa0393820:intron 45.0%
GATATCCCGATATAGCACAC+CGG + chr3_2:7958538-7958557 None:intergenic 45.0%
GGCACTGTAGACTTCATCTT+TGG - chr3_2:7958614-7958633 Msa0393820:CDS 45.0%
! ATGTTAGCTTGGCCATCCAA+AGG + chr3_2:7958686-7958705 None:intergenic 45.0%
TGGCCAAGCTAACATGATCA+CGG - chr3_2:7958691-7958710 Msa0393820:CDS 45.0%
GCATCAAAGTTTACGGTTGC+TGG - chr3_2:7959034-7959053 Msa0393820:CDS 45.0%
! GGAAGGTCCTTTTCTTGATG+AGG + chr3_2:7957224-7957243 None:intergenic 45.0%
! CCACCAATCTATGTTGCTTG+AGG + chr3_2:7957245-7957264 None:intergenic 45.0%
CCTCAAGCAACATAGATTGG+TGG - chr3_2:7957242-7957261 Msa0393820:CDS 45.0%
TGTTTGCATGGCTTAGGATG+TGG + chr3_2:7957280-7957299 None:intergenic 45.0%
GCATGGTAAGAGCTTGGTTT+AGG + chr3_2:7957378-7957397 None:intergenic 45.0%
GTGGTAGCAAAAGATGGTTC+TGG - chr3_2:7957925-7957944 Msa0393820:intron 45.0%
TGCTGTTGCAGAGCTATAAG+TGG + chr3_2:7958148-7958167 None:intergenic 45.0%
! ACTTATAGCTCTGCAACAGC+AGG - chr3_2:7958147-7958166 Msa0393820:CDS 45.0%
GTAAAAGACAGAGAGATCGG+AGG + chr3_2:7958516-7958535 None:intergenic 45.0%
CCGGTAAAAGACAGAGAGAT+CGG + chr3_2:7958519-7958538 None:intergenic 45.0%
! CCGATCTCTCTGTCTTTTAC+CGG - chr3_2:7958516-7958535 Msa0393820:intron 45.0%
GATATCCCGATATAGCACAC+CGG + chr3_2:7958538-7958557 None:intergenic 45.0%
GGCACTGTAGACTTCATCTT+TGG - chr3_2:7958614-7958633 Msa0393820:CDS 45.0%
! ATGTTAGCTTGGCCATCCAA+AGG + chr3_2:7958686-7958705 None:intergenic 45.0%
TGGCCAAGCTAACATGATCA+CGG - chr3_2:7958691-7958710 Msa0393820:CDS 45.0%
GCATCAAAGTTTACGGTTGC+TGG - chr3_2:7959034-7959053 Msa0393820:CDS 45.0%
!!! TAAAATTTTATAATAAGATA+GGG - chr3_2:7958307-7958326 Msa0393820:CDS 5.0%
!!! TAAAATTTTATAATAAGATA+GGG - chr3_2:7958307-7958326 Msa0393820:CDS 5.0%
CATCTCAACCGCACACTTGA+AGG - chr3_2:7957496-7957515 Msa0393820:CDS 50.0%
!! TGGACCGGCAGTATTTTGGA+AGG + chr3_2:7958462-7958481 None:intergenic 50.0%
! TGTGTGGACCGGCAGTATTT+TGG + chr3_2:7958466-7958485 None:intergenic 50.0%
AAATACTGCCGGTCCACACA+AGG - chr3_2:7958466-7958485 Msa0393820:intron 50.0%
AATACTGCCGGTCCACACAA+GGG - chr3_2:7958467-7958486 Msa0393820:intron 50.0%
GGTGACCCATTCCAAAACAC+TGG - chr3_2:7958725-7958744 Msa0393820:CDS 50.0%
AAACCTTCTTGGGAAGGCCT+TGG - chr3_2:7958813-7958832 Msa0393820:CDS 50.0%
GCAAAATCAGTGTCACCCCA+TGG + chr3_2:7958908-7958927 None:intergenic 50.0%
GTAGTTGTTGCCAACCACGT+TGG + chr3_2:7959073-7959092 None:intergenic 50.0%
CATCTCAACCGCACACTTGA+AGG - chr3_2:7957496-7957515 Msa0393820:CDS 50.0%
!! TGGACCGGCAGTATTTTGGA+AGG + chr3_2:7958462-7958481 None:intergenic 50.0%
! TGTGTGGACCGGCAGTATTT+TGG + chr3_2:7958466-7958485 None:intergenic 50.0%
AAATACTGCCGGTCCACACA+AGG - chr3_2:7958466-7958485 Msa0393820:intron 50.0%
AATACTGCCGGTCCACACAA+GGG - chr3_2:7958467-7958486 Msa0393820:intron 50.0%
GGTGACCCATTCCAAAACAC+TGG - chr3_2:7958725-7958744 Msa0393820:CDS 50.0%
AAACCTTCTTGGGAAGGCCT+TGG - chr3_2:7958813-7958832 Msa0393820:CDS 50.0%
GCAAAATCAGTGTCACCCCA+TGG + chr3_2:7958908-7958927 None:intergenic 50.0%
GTAGTTGTTGCCAACCACGT+TGG + chr3_2:7959073-7959092 None:intergenic 50.0%
AGCTTGACCCTTGTGTGGAC+CGG + chr3_2:7958477-7958496 None:intergenic 55.0%
TCCACACAAGGGTCAAGCTG+TGG - chr3_2:7958478-7958497 Msa0393820:intron 55.0%
CAGAGAGATCGGAGGCTGAT+CGG + chr3_2:7958508-7958527 None:intergenic 55.0%
CATCTTTGGCAACGCTGCAG+TGG - chr3_2:7958628-7958647 Msa0393820:CDS 55.0%
GGGCCGTGATCATGTTAGCT+TGG + chr3_2:7958697-7958716 None:intergenic 55.0%
GCTAACATGATCACGGCCCA+AGG - chr3_2:7958698-7958717 Msa0393820:CDS 55.0%
GAATGGGTCACCACGACCTT+GGG + chr3_2:7958717-7958736 None:intergenic 55.0%
TTGCCAAGGCCTTCCCAAGA+AGG + chr3_2:7958819-7958838 None:intergenic 55.0%
GACACTTTAGTGAGCCCCCT+AGG - chr3_2:7958875-7958894 Msa0393820:CDS 55.0%
CTTTAGTGAGCCCCCTAGGT+TGG - chr3_2:7958879-7958898 Msa0393820:CDS 55.0%
ACCCCATGGAGACCAACCTA+GGG + chr3_2:7958894-7958913 None:intergenic 55.0%
AGCTTGACCCTTGTGTGGAC+CGG + chr3_2:7958477-7958496 None:intergenic 55.0%
TCCACACAAGGGTCAAGCTG+TGG - chr3_2:7958478-7958497 Msa0393820:intron 55.0%
CAGAGAGATCGGAGGCTGAT+CGG + chr3_2:7958508-7958527 None:intergenic 55.0%
CATCTTTGGCAACGCTGCAG+TGG - chr3_2:7958628-7958647 Msa0393820:CDS 55.0%
GGGCCGTGATCATGTTAGCT+TGG + chr3_2:7958697-7958716 None:intergenic 55.0%
GCTAACATGATCACGGCCCA+AGG - chr3_2:7958698-7958717 Msa0393820:CDS 55.0%
GAATGGGTCACCACGACCTT+GGG + chr3_2:7958717-7958736 None:intergenic 55.0%
TTGCCAAGGCCTTCCCAAGA+AGG + chr3_2:7958819-7958838 None:intergenic 55.0%
GACACTTTAGTGAGCCCCCT+AGG - chr3_2:7958875-7958894 Msa0393820:CDS 55.0%
CTTTAGTGAGCCCCCTAGGT+TGG - chr3_2:7958879-7958898 Msa0393820:CDS 55.0%
ACCCCATGGAGACCAACCTA+GGG + chr3_2:7958894-7958913 None:intergenic 55.0%
GCCACAGCTTGACCCTTGTG+TGG + chr3_2:7958482-7958501 None:intergenic 60.0%
ATGATCACGGCCCAAGGTCG+TGG - chr3_2:7958704-7958723 Msa0393820:CDS 60.0%
GGAATGGGTCACCACGACCT+TGG + chr3_2:7958718-7958737 None:intergenic 60.0%
CCCATGGAGACCAACCTAGG+GGG + chr3_2:7958892-7958911 None:intergenic 60.0%
!! CCCCCTAGGTTGGTCTCCAT+GGG - chr3_2:7958889-7958908 Msa0393820:CDS 60.0%
CCCCATGGAGACCAACCTAG+GGG + chr3_2:7958893-7958912 None:intergenic 60.0%
!! CCCCTAGGTTGGTCTCCATG+GGG - chr3_2:7958890-7958909 Msa0393820:CDS 60.0%
CACCCCATGGAGACCAACCT+AGG + chr3_2:7958895-7958914 None:intergenic 60.0%
ACGGTTGCTGGACTCCTTGC+TGG - chr3_2:7959046-7959065 Msa0393820:CDS 60.0%
GACTCCTTGCTGGACCAACG+TGG - chr3_2:7959056-7959075 Msa0393820:CDS 60.0%
CCAACCACGTTGGTCCAGCA+AGG + chr3_2:7959063-7959082 None:intergenic 60.0%
CCTTGCTGGACCAACGTGGT+TGG - chr3_2:7959060-7959079 Msa0393820:CDS 60.0%
GCCACAGCTTGACCCTTGTG+TGG + chr3_2:7958482-7958501 None:intergenic 60.0%
ATGATCACGGCCCAAGGTCG+TGG - chr3_2:7958704-7958723 Msa0393820:CDS 60.0%
GGAATGGGTCACCACGACCT+TGG + chr3_2:7958718-7958737 None:intergenic 60.0%
CCCATGGAGACCAACCTAGG+GGG + chr3_2:7958892-7958911 None:intergenic 60.0%
!! CCCCCTAGGTTGGTCTCCAT+GGG - chr3_2:7958889-7958908 Msa0393820:CDS 60.0%
CCCCATGGAGACCAACCTAG+GGG + chr3_2:7958893-7958912 None:intergenic 60.0%
!! CCCCTAGGTTGGTCTCCATG+GGG - chr3_2:7958890-7958909 Msa0393820:CDS 60.0%
CACCCCATGGAGACCAACCT+AGG + chr3_2:7958895-7958914 None:intergenic 60.0%
ACGGTTGCTGGACTCCTTGC+TGG - chr3_2:7959046-7959065 Msa0393820:CDS 60.0%
GACTCCTTGCTGGACCAACG+TGG - chr3_2:7959056-7959075 Msa0393820:CDS 60.0%
CCAACCACGTTGGTCCAGCA+AGG + chr3_2:7959063-7959082 None:intergenic 60.0%
CCTTGCTGGACCAACGTGGT+TGG - chr3_2:7959060-7959079 Msa0393820:CDS 60.0%
!! GCCCCCTAGGTTGGTCTCCA+TGG - chr3_2:7958888-7958907 Msa0393820:CDS 65.0%
!! GCCCCCTAGGTTGGTCTCCA+TGG - chr3_2:7958888-7958907 Msa0393820:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 7957160 7959117 7957160 ID=Msa0393820;Name=Msa0393820
chr3_2 mRNA 7957160 7959117 7957160 ID=Msa0393820-mRNA-1;Parent=Msa0393820;Name=Msa0393820-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|1|1|3|0|527
chr3_2 exon 7958559 7959117 7958559 ID=Msa0393820-mRNA-1:exon:2085;Parent=Msa0393820-mRNA-1
chr3_2 exon 7958109 7958438 7958109 ID=Msa0393820-mRNA-1:exon:2084;Parent=Msa0393820-mRNA-1
chr3_2 exon 7957160 7957854 7957160 ID=Msa0393820-mRNA-1:exon:2083;Parent=Msa0393820-mRNA-1
chr3_2 CDS 7958559 7959117 7958559 ID=Msa0393820-mRNA-1:cds;Parent=Msa0393820-mRNA-1
chr3_2 CDS 7958109 7958438 7958109 ID=Msa0393820-mRNA-1:cds;Parent=Msa0393820-mRNA-1
chr3_2 CDS 7957160 7957854 7957160 ID=Msa0393820-mRNA-1:cds;Parent=Msa0393820-mRNA-1
Gene Sequence

>Msa0393820

ATGGCAATCATTGGAAAAACATTGTTCATGCTCTTTTTCTTATCTTCAATTTTCTCAATAGCCTCATCAAGAAAAGGACCTTCCTCAAGCAACATAGATTGGTGGTGCAATTTAACACCACATCCTAAGCCATGCAAACACTACATAACACAAATGAACAATCATTTCAAAATCAAACATAGAGTTGAATTCAGGGAAATGCTTGTTCAATTAGCCCTAAACCAAGCTCTTACCATGCAAAAAGACGCACAAGAAAATTCTCAACAACAACAAAATTCATCAGTGCATAAAACGGTTCATGGTGATTGTTTGAAGCTATTTGAAAACACAATTTTTCATCTCAACCGCACACTTGAAGGCTTAAACAATGCAAGCAAAAATTGTTCACCAAATGATGCACAAACATGGCTCACAACTTCTCTCACAAATATTGAAACATGTAAAAGTGGAGCTTTAGAACTCAATGCTCAAGATTTCAATTTTATTATGCAAGCCAATGTCACTGAGATGTTAAGGAACGTCTTAGCCATCAATATGCATTTCCTGAAACATAACAAAGAAACAAAAGAAGGGTCATTTCCAAAATGGTTTTCTATGCATGAAAGGAAGCTTTTGCAGTCCAAGTCTCCAGTAAAGTACAATCTTGTGGTAGCAAAAGATGGTTCTGGACAGTACAAGACTGTGCAAGCTGCTTTGAATGCTGCTGCTAAGAGAAAATACAAGACAAGGTTTGTGATACATGTTAAGAAAGGTGTTTATAGAGAGAACATTGAGGTTGCTGTTCATAATGATAACATTATGCTGGTTGGTGATGGAATGCAAAATACCATAATAACAAGTTCTAGAAGTGTTCAAGATGGTTATACCACTTATAGCTCTGCAACAGCAGGTATTGATGGACTTCACTTCATTGCACGTGACATAACCTTCCAAAATACTGCCGGTCCACACAAGGGTCAAGCTGTGGCGCTCCGATCAGCCTCCGATCTCTCTGTCTTTTACCGGTGTGCTATATCGGGATATCAAGACACTTTGATGGCTCATGCACAACGTCAATTTTATCGACAATGCTTCATCTATGGCACTGTAGACTTCATCTTTGGCAACGCTGCAGTGGTGTTCCAAAATTGTAAAATTTTCGCAAGAAAACCTTTGGATGGCCAAGCTAACATGATCACGGCCCAAGGTCGTGGTGACCCATTCCAAAACACTGGAATTTCATTCCACAATTGTCAAATTAGGGCTGCATCTGATCTAAAGCCTGTTGTTGACAAGTACAAAACCTTCTTGGGAAGGCCTTGGCAACAATATTCAAGAGTTATGGTGATGAAAACTTTTATGGACACTTTAGTGAGCCCCCTAGGTTGGTCTCCATGGGGTGACACTGATTTTGCTCAAGACACATTGTATTATGGTGAATATGAAAACTATGGACCTGGTTCATCAACAGCAAATAGAGTAAAATGGCCTGGTTATCATGTGATAACAAATCCAAAGGAAGCATCAAAGTTTACGGTTGCTGGACTCCTTGCTGGACCAACGTGGTTGGCAACAACTACTGTGCCATTTACTTCTGGTCTTTGA
Protein sequence

>Msa0393820

MAIIGKTLFMLFFLSSIFSIASSRKGPSSSNIDWWCNLTPHPKPCKHYITQMNNHFKIKHRVEFREMLVQLALNQALTMQKDAQENSQQQQNSSVHKTVHGDCLKLFENTIFHLNRTLEGLNNASKNCSPNDAQTWLTTSLTNIETCKSGALELNAQDFNFIMQANVTEMLRNVLAINMHFLKHNKETKEGSFPKWFSMHERKLLQSKSPVKYNLVVAKDGSGQYKTVQAALNAAAKRKYKTRFVIHVKKGVYRENIEVAVHNDNIMLVGDGMQNTIITSSRSVQDGYTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAISGYQDTLMAHAQRQFYRQCFIYGTVDFIFGNAAVVFQNCKIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQIRAASDLKPVVDKYKTFLGRPWQQYSRVMVMKTFMDTLVSPLGWSPWGDTDFAQDTLYYGEYENYGPGSSTANRVKWPGYHVITNPKEASKFTVAGLLAGPTWLATTTVPFTSGL*