AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0210780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0210780 MtrunA17_Chr2g0309321 80.415 337 25 5 1 303 1 330 0.0 506
Msa0210780 MtrunA17_Chr4g0058641 30.450 289 155 4 46 296 39 319 1.88e-37 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0210780 AT5G44600.1 47.887 284 106 3 57 298 50 333 2.23e-87 265
Msa0210780 AT5G44590.2 50.179 279 104 2 57 300 43 321 2.68e-84 257
Msa0210780 AT5G44590.1 47.138 297 104 3 57 300 43 339 1.12e-79 246
Msa0210780 AT5G63100.1 32.830 265 132 7 72 296 63 321 4.95e-27 108

Find 81 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGAAGCATAGTAGATTT+AGG 0.193449 2_1:-51130740 None:intergenic
TCCATCACTCCTGTGCTTAA+AGG 0.228397 2_1:-51135781 None:intergenic
AAAGGTCCCATTGCTATCTT+AGG 0.249398 2_1:+51132142 Msa0210780:CDS
TGTTCATAGCATTCTTTATA+AGG 0.265082 2_1:+51130874 Msa0210780:CDS
ATAGAGGAGAGTATTGATTT+TGG 0.292252 2_1:-51130566 None:intergenic
TTTGTATGAGGTGTTAATTA+TGG 0.320358 2_1:-51135965 None:intergenic
TGTGGAAAACTAAAACTAAA+TGG 0.322783 2_1:-51130488 None:intergenic
GGAGAAGCATAGTAGATTTA+GGG 0.323569 2_1:-51130739 None:intergenic
TATACATGTGAACAATTTCC+AGG 0.332766 2_1:+51133513 Msa0210780:CDS
TATTTCTAATGACTAGGTTT+TGG 0.334385 2_1:+51136243 Msa0210780:three_prime_UTR
AAGATAGCAATGGGACCTTT+TGG 0.339083 2_1:-51132139 None:intergenic
CTCATTGTTGCTTGCTCAAA+CGG 0.354933 2_1:-51130446 None:intergenic
TTGGAGAGAATGGATGATTA+TGG 0.357066 2_1:-51130589 None:intergenic
TCCCATTGCTATCTTAGGTT+TGG 0.373072 2_1:+51132147 Msa0210780:CDS
GTGAACTGCGGCGGGATCGA+TGG 0.374002 2_1:+51134698 Msa0210780:CDS
CGGCATTGCAACTCGAAGGC+TGG 0.376977 2_1:+51132323 Msa0210780:CDS
TTGTATGAGGTGTTAATTAT+GGG 0.386588 2_1:-51135964 None:intergenic
TACTTGTCCAGGAAATGCTT+TGG 0.390656 2_1:-51134798 None:intergenic
TGAACTGCGGCGGGATCGAT+GGG 0.399386 2_1:+51134699 Msa0210780:CDS
AAATTCTCACCCGTTTCCTT+TGG 0.400929 2_1:-51135700 None:intergenic
AACAAGTCAACCACAATTCC+TGG 0.403504 2_1:-51133531 None:intergenic
CACGGCGAACACCTCGTTTA+CGG 0.404159 2_1:+51136267 Msa0210780:three_prime_UTR
TATTAGGCTTTATTTGTATG+AGG 0.415504 2_1:-51135977 None:intergenic
GCATTATCCAAAGCATTTCC+TGG 0.417765 2_1:+51134791 Msa0210780:CDS
TGGAACAATGGCTGGTAAGC+TGG 0.424142 2_1:-51132119 None:intergenic
CCTTACCTGATCTAAAATCT+TGG 0.433757 2_1:+51135740 Msa0210780:CDS
GGAATTACATGATAGATTGA+TGG 0.439351 2_1:+51134658 Msa0210780:CDS
GAATGGATGATTATGGATAG+AGG 0.443261 2_1:-51130582 None:intergenic
AAAAGTGGACTAATTCCTAC+TGG 0.444949 2_1:+51130900 Msa0210780:CDS
ATGATGTGGCTGTTGATGTT+GGG 0.452968 2_1:-51130624 None:intergenic
TGAAGTGAAGTTGGAGAGAA+TGG 0.462689 2_1:-51130599 None:intergenic
TGTTGGGCATGAAGTGAAGT+TGG 0.469893 2_1:-51130608 None:intergenic
GAAGAGAATGCCAAAGGAAA+CGG 0.472724 2_1:+51135690 Msa0210780:CDS
CAGCCTTCGAGTTGCAATGC+CGG 0.476454 2_1:-51132322 None:intergenic
CATGATGTGGCTGTTGATGT+TGG 0.477148 2_1:-51130625 None:intergenic
ACCAAACCTAAGATAGCAAT+GGG 0.480667 2_1:-51132148 None:intergenic
TCCTTTAAGCACAGGAGTGA+TGG 0.481104 2_1:+51135780 Msa0210780:CDS
CTGCGGCGGGATCGATGGGG+TGG 0.485766 2_1:+51134703 Msa0210780:CDS
CTGACAGGTTAGTACTTGGT+TGG 0.487497 2_1:+51134637 Msa0210780:intron
AAATAGACGCTTACTTGTCC+AGG 0.498402 2_1:-51134809 None:intergenic
ACTCCTGTGCTTAAAGGAGA+TGG 0.500537 2_1:-51135775 None:intergenic
GGCATTGCAACTCGAAGGCT+GGG 0.503163 2_1:+51132324 Msa0210780:CDS
TTGTCTGACAGGTTAGTACT+TGG 0.503970 2_1:+51134633 Msa0210780:intron
TAAGCACAGGAGTGATGGAT+TGG 0.505919 2_1:+51135785 Msa0210780:CDS
TTACCAGCCATTGTTCCAAA+AGG 0.511816 2_1:+51132124 Msa0210780:CDS
TCTTCTTCTTGATCATGATG+TGG 0.512477 2_1:-51130638 None:intergenic
AAAATATGATTTGTAGGGAA+AGG 0.521603 2_1:+51135863 Msa0210780:three_prime_UTR
TGTGGAGGTCTCAAAGGGCT+AGG 0.524356 2_1:-51136299 None:intergenic
AAGAGAATGCCAAAGGAAAC+GGG 0.525414 2_1:+51135691 Msa0210780:CDS
CTCATCTGATGCTTGAATTG+TGG 0.526429 2_1:+51132299 Msa0210780:CDS
GGCGGGATCGATGGGGTGGA+TGG 0.530453 2_1:+51134707 Msa0210780:CDS
GTCCCATCTCCTTTAAGCAC+AGG 0.532466 2_1:+51135772 Msa0210780:CDS
GTGGTTGACTTGTTCTCTGA+CGG 0.550045 2_1:+51133540 Msa0210780:CDS
TGACAAGAGGAGAAAGCAAT+GGG 0.550569 2_1:+51130387 None:intergenic
CTCCTGTGCTTAAAGGAGAT+GGG 0.552215 2_1:-51135774 None:intergenic
TTGTCGTACGAGAAGAATCA+AGG 0.557833 2_1:-51130760 None:intergenic
TCTGATGCTTGAATTGTGGC+CGG 0.563302 2_1:+51132303 Msa0210780:CDS
AAACATACCTCTTGCAGCTG+AGG 0.563965 2_1:-51133573 None:intergenic
AATTATCAAATGACGAGGCA+TGG 0.572264 2_1:+51134747 Msa0210780:CDS
TGAACAATTTCCAGGAATTG+TGG 0.573919 2_1:+51133521 Msa0210780:CDS
TACCAAACCTAAGATAGCAA+TGG 0.583738 2_1:-51132149 None:intergenic
CATGATAGATTGATGGCCAA+TGG 0.587007 2_1:+51134665 Msa0210780:CDS
TCTAGTTATTTCTAATGACT+AGG 0.588328 2_1:+51136237 Msa0210780:three_prime_UTR
TTTGAGCAAGCAACAATGAG+AGG 0.588962 2_1:+51130449 Msa0210780:exon
GACATGTGTGGAGGTCTCAA+AGG 0.602454 2_1:-51136305 None:intergenic
GTGACAAGAGGAGAAAGCAA+TGG 0.608858 2_1:+51130386 None:intergenic
GTTCACCATAAAACGACCAT+TGG 0.610306 2_1:-51134681 None:intergenic
GAAACACCAATGTCAATGTG+TGG 0.617133 2_1:-51130506 None:intergenic
GAGAAGCATAGTAGATTTAG+GGG 0.618045 2_1:-51130738 None:intergenic
TGGCCGGCATTGCAACTCGA+AGG 0.621440 2_1:+51132319 Msa0210780:CDS
TGAACGAACATAGAGAATTG+AGG 0.626176 2_1:+51130410 Msa0210780:five_prime_UTR
TCATTAGAAATAACTAGAGG+AGG 0.626620 2_1:-51136232 None:intergenic
ACATGTGTGGAGGTCTCAAA+GGG 0.632423 2_1:-51136304 None:intergenic
AAAGTGGACTAATTCCTACT+GGG 0.641570 2_1:+51130901 Msa0210780:CDS
TTGAGCAAGCAACAATGAGA+GGG 0.645970 2_1:+51130450 Msa0210780:exon
AAGTAACATACATACCCAGT+AGG 0.656319 2_1:-51130915 None:intergenic
ATTCTAGAAACTATTTCACA+AGG 0.660007 2_1:-51135811 None:intergenic
GAACTGCGGCGGGATCGATG+GGG 0.666515 2_1:+51134700 Msa0210780:CDS
ATGTTGGAAGAGAATGCCAA+AGG 0.667941 2_1:+51135684 Msa0210780:CDS
GGACTGACAGTCCGTAAACG+AGG 0.672844 2_1:-51136278 None:intergenic
TAGTCATTAGAAATAACTAG+AGG 0.682907 2_1:-51136235 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTGACT+AGG - chr2_1:51131730-51131749 None:intergenic 10.0%
!! TATGTAATTAAAAAAGTTAT+CGG - chr2_1:51132479-51132498 None:intergenic 10.0%
!! AAATATTTATTAGATATGAA+GGG - chr2_1:51132811-51132830 None:intergenic 10.0%
!! AAAATATTTATTAGATATGA+AGG - chr2_1:51132812-51132831 None:intergenic 10.0%
!! ACATCAATAATAATATAAAT+TGG + chr2_1:51133694-51133713 Msa0210780:intron 10.0%
!! ATAATAATATAAATTGGAAT+TGG + chr2_1:51133700-51133719 Msa0210780:intron 10.0%
!! AAAATTTGTAATCTTTATAT+GGG + chr2_1:51134894-51134913 Msa0210780:intron 10.0%
!!! TATGATTTGAGAATTTTTTT+TGG + chr2_1:51131036-51131055 Msa0210780:intron 15.0%
!! TATAACATAATTGACATTTA+AGG - chr2_1:51132232-51132251 None:intergenic 15.0%
!!! ATACTGTTTTTTAAATCTTT+AGG + chr2_1:51132261-51132280 Msa0210780:intron 15.0%
!!! TACTGTTTTTTAAATCTTTA+GGG + chr2_1:51132262-51132281 Msa0210780:intron 15.0%
!! AACAAGTAAAAACATATAAA+GGG - chr2_1:51133726-51133745 None:intergenic 15.0%
!! CAAAATTTGTAATCTTTATA+TGG + chr2_1:51134893-51134912 Msa0210780:intron 15.0%
!! TAATCTTTATATGAGATATA+AGG + chr2_1:51134988-51135007 Msa0210780:intron 15.0%
!! AATCTTTATATGAGATATAA+GGG + chr2_1:51134989-51135008 Msa0210780:intron 15.0%
!!! AATACAAAACGTTTTATTAT+TGG + chr2_1:51135044-51135063 Msa0210780:intron 15.0%
!! TTTAAATTGGAAAATCAAAA+TGG - chr2_1:51135071-51135090 None:intergenic 15.0%
!! AATGTCTAATCAATTTAAAT+TGG - chr2_1:51135084-51135103 None:intergenic 15.0%
!!! TTTAGTTTCATAGATTATTT+TGG - chr2_1:51135202-51135221 None:intergenic 15.0%
!!! AATTTTGAAATGTTAATTTC+AGG + chr2_1:51135508-51135527 Msa0210780:intron 15.0%
!!! ATTTTGAAATGTTAATTTCA+GGG + chr2_1:51135509-51135528 Msa0210780:intron 15.0%
!! TTAAAAAAGTCACATAATAA+AGG - chr2_1:51135622-51135641 None:intergenic 15.0%
!!! AATGTAAAAATATGATTTGT+AGG + chr2_1:51135857-51135876 Msa0210780:three_prime_UTR 15.0%
!!! ATGTAAAAATATGATTTGTA+GGG + chr2_1:51135858-51135877 Msa0210780:three_prime_UTR 15.0%
!! ATATGTCAGCTATATATATT+AGG - chr2_1:51131627-51131646 None:intergenic 20.0%
!! AATTTCTAACATTATGTCAA+CGG - chr2_1:51131866-51131885 None:intergenic 20.0%
!! ACTTATAAGTATCAACATTT+AGG - chr2_1:51132000-51132019 None:intergenic 20.0%
!! GTAATTTCTTAATCTTAAGA+TGG + chr2_1:51132169-51132188 Msa0210780:intron 20.0%
!! ATTATCTTGGTCAATTTATA+AGG + chr2_1:51132197-51132216 Msa0210780:intron 20.0%
!! ATTTGAGTATAGATTATAGA+AGG + chr2_1:51132665-51132684 Msa0210780:intron 20.0%
!! CATGGTAAAATTAAATAACT+TGG + chr2_1:51132718-51132737 Msa0210780:intron 20.0%
!!! CAAATACTCTACAATTTTTA+TGG + chr2_1:51132781-51132800 Msa0210780:intron 20.0%
!! TTTCCGAGAAAATAAAATTT+GGG - chr2_1:51132990-51133009 None:intergenic 20.0%
!!! TTTTCCGAGAAAATAAAATT+TGG - chr2_1:51132991-51133010 None:intergenic 20.0%
!! TTATCGATCAACTAAATATT+TGG - chr2_1:51133014-51133033 None:intergenic 20.0%
!!! AATTAAGTTGTTTATCCAAA+CGG + chr2_1:51133227-51133246 Msa0210780:intron 20.0%
!! TTTCTCTTTGACTATTTAAT+GGG + chr2_1:51133462-51133481 Msa0210780:intron 20.0%
!! GAACAAGTAAAAACATATAA+AGG - chr2_1:51133727-51133746 None:intergenic 20.0%
!! ACATAATTAGAGAAAGTAAT+AGG - chr2_1:51134358-51134377 None:intergenic 20.0%
!! GCTTAAGCAAAAAAATTAAT+TGG + chr2_1:51134408-51134427 Msa0210780:intron 20.0%
!! AAAAAAATTAATTGGACCAA+TGG + chr2_1:51134416-51134435 Msa0210780:intron 20.0%
!!! TCGTCATTTGATAATTTTTT+TGG - chr2_1:51134743-51134762 None:intergenic 20.0%
!! AAAAAAATTATCAAATGACG+AGG + chr2_1:51134742-51134761 Msa0210780:CDS 20.0%
!!! TTTTTACATTTACTATGAAG+TGG - chr2_1:51135847-51135866 None:intergenic 20.0%
!!! TATTCTTTTGACATTTTCTT+GGG + chr2_1:51135916-51135935 Msa0210780:three_prime_UTR 20.0%
! TGTGGAAAACTAAAACTAAA+TGG - chr2_1:51130491-51130510 None:intergenic 25.0%
! TGTTCATAGCATTCTTTATA+AGG + chr2_1:51130874-51130893 Msa0210780:CDS 25.0%
! TTCTTTATAAGGACAAAAAG+TGG + chr2_1:51130885-51130904 Msa0210780:CDS 25.0%
! ATTAACTTACTTGACACAAT+AGG + chr2_1:51131009-51131028 Msa0210780:intron 25.0%
! TTATCATCATTGCTGATAAT+AGG - chr2_1:51131076-51131095 None:intergenic 25.0%
! TGTCTAATTCTCTTACAATT+TGG + chr2_1:51131114-51131133 Msa0210780:intron 25.0%
! GTCTAATTCTCTTACAATTT+GGG + chr2_1:51131115-51131134 Msa0210780:intron 25.0%
! AATTGTATTAATCTCGTTCT+TGG + chr2_1:51131312-51131331 Msa0210780:intron 25.0%
! ATTGTATTAATCTCGTTCTT+GGG + chr2_1:51131313-51131332 Msa0210780:intron 25.0%
! GTACTGTAAAACTAAAGTAT+AGG + chr2_1:51131650-51131669 Msa0210780:intron 25.0%
! CAGTAACTTATAATTTGACT+AGG - chr2_1:51131770-51131789 None:intergenic 25.0%
! ATTTCTAACATTATGTCAAC+GGG - chr2_1:51131865-51131884 None:intergenic 25.0%
! TAGATGAATTATTCATCACA+AGG + chr2_1:51132060-51132079 Msa0210780:intron 25.0%
! AGATGAATTATTCATCACAA+GGG + chr2_1:51132061-51132080 Msa0210780:intron 25.0%
! TAAGATGGAGTATATTATCT+TGG + chr2_1:51132184-51132203 Msa0210780:intron 25.0%
!!! TGTTTTTTAAATCTTTAGGG+TGG + chr2_1:51132265-51132284 Msa0210780:intron 25.0%
!! ACAAACATGAAATTTGTTCT+TGG + chr2_1:51132578-51132597 Msa0210780:intron 25.0%
!!! ATTATAGAAGGTACTTTCAT+TGG + chr2_1:51132677-51132696 Msa0210780:intron 25.0%
!!! ATTTTTTATATGAAGATGCC+AGG + chr2_1:51132827-51132846 Msa0210780:intron 25.0%
!!! TCACCCAAATTTTATTTTCT+CGG + chr2_1:51132984-51133003 Msa0210780:intron 25.0%
!! GATAAAGCAAGAGATTATTT+TGG + chr2_1:51133029-51133048 Msa0210780:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+GGG + chr2_1:51133228-51133247 Msa0210780:intron 25.0%
! TAACCAATCTAACTAACTAA+TGG + chr2_1:51133287-51133306 Msa0210780:intron 25.0%
! AACATTAATGCATCATTGAA+TGG + chr2_1:51133375-51133394 Msa0210780:intron 25.0%
! CATTAAATAGTCAAAGAGAA+AGG - chr2_1:51133463-51133482 None:intergenic 25.0%
! CTTTCTCTTTGACTATTTAA+TGG + chr2_1:51133461-51133480 Msa0210780:intron 25.0%
! TTCTCTTTGACTATTTAATG+GGG + chr2_1:51133463-51133482 Msa0210780:intron 25.0%
! GGTCATTATAAAATTGTTCT+TGG + chr2_1:51133613-51133632 Msa0210780:intron 25.0%
! GTTTAGGTCATTCATTTATA+TGG + chr2_1:51133791-51133810 Msa0210780:intron 25.0%
! GTCATTCATTTATATGGTAT+AGG + chr2_1:51133797-51133816 Msa0210780:intron 25.0%
! CTGCAATTAACAAAATATAC+CGG - chr2_1:51133885-51133904 None:intergenic 25.0%
!! GGTATATTTTGTTAATTGCA+GGG + chr2_1:51133884-51133903 Msa0210780:intron 25.0%
! AGGTTAATGGGAATAAAATA+TGG + chr2_1:51133977-51133996 Msa0210780:intron 25.0%
!! AGAAAACATGGTTGATATTA+TGG + chr2_1:51134022-51134041 Msa0210780:intron 25.0%
! GAAAAATAGAAAAGTGAAGA+TGG + chr2_1:51134044-51134063 Msa0210780:intron 25.0%
! TTTATGCAGTTATCAAGATA+AGG - chr2_1:51134213-51134232 None:intergenic 25.0%
!! TATCTTGATAACTGCATAAA+AGG + chr2_1:51134213-51134232 Msa0210780:intron 25.0%
!! ATCTTGATAACTGCATAAAA+GGG + chr2_1:51134214-51134233 Msa0210780:intron 25.0%
! TAATAAAAGCTCATAGGATA+GGG - chr2_1:51134244-51134263 None:intergenic 25.0%
!! TAATGCACAAACAGTTATTT+TGG + chr2_1:51134297-51134316 Msa0210780:intron 25.0%
! TATTATGATTCCATAACCAT+TGG - chr2_1:51134435-51134454 None:intergenic 25.0%
!!! TTTTTTCCTTGAGAAATCAA+AGG + chr2_1:51134540-51134559 Msa0210780:intron 25.0%
!! TTTGTTTAGCTCATATTCTT+AGG - chr2_1:51134877-51134896 None:intergenic 25.0%
! AAACTTCATGTGTTAGAATA+GGG - chr2_1:51134953-51134972 None:intergenic 25.0%
! AAAACTTCATGTGTTAGAAT+AGG - chr2_1:51134954-51134973 None:intergenic 25.0%
!!! TTGATTGCATTAGTCTTTTT+GGG - chr2_1:51135469-51135488 None:intergenic 25.0%
!!! ATTGATTGCATTAGTCTTTT+TGG - chr2_1:51135470-51135489 None:intergenic 25.0%
! AAAAAGACTAATGCAATCAA+TGG + chr2_1:51135469-51135488 Msa0210780:intron 25.0%
! TTTAGTCCCTAAAATTGTAA+GGG - chr2_1:51135549-51135568 None:intergenic 25.0%
! ATTTAGTCCCTAAAATTGTA+AGG - chr2_1:51135550-51135569 None:intergenic 25.0%
! AAAGTCACATAATAAAGGAA+AGG - chr2_1:51135617-51135636 None:intergenic 25.0%
!! ATTCTAGAAACTATTTCACA+AGG - chr2_1:51135814-51135833 None:intergenic 25.0%
!! AAAATATGATTTGTAGGGAA+AGG + chr2_1:51135863-51135882 Msa0210780:three_prime_UTR 25.0%
!! GTATTCTTTTGACATTTTCT+TGG + chr2_1:51135915-51135934 Msa0210780:three_prime_UTR 25.0%
!! ATTCTTTTGACATTTTCTTG+GGG + chr2_1:51135917-51135936 Msa0210780:three_prime_UTR 25.0%
!! TTGTATGAGGTGTTAATTAT+GGG - chr2_1:51135967-51135986 None:intergenic 25.0%
!! TTTGTATGAGGTGTTAATTA+TGG - chr2_1:51135968-51135987 None:intergenic 25.0%
!!! TATTAGGCTTTATTTGTATG+AGG - chr2_1:51135980-51135999 None:intergenic 25.0%
! TTATTTCAAAGTAATACCTC+AGG + chr2_1:51136036-51136055 Msa0210780:intron 25.0%
! ATTATAACCAAACAAACCAT+AGG + chr2_1:51136069-51136088 Msa0210780:intron 25.0%
!!! TTTATAACCTATGGTTTGTT+TGG - chr2_1:51136079-51136098 None:intergenic 25.0%
! TAGTCATTAGAAATAACTAG+AGG - chr2_1:51136238-51136257 None:intergenic 25.0%
!!! TCTAGTTATTTCTAATGACT+AGG + chr2_1:51136237-51136256 Msa0210780:three_prime_UTR 25.0%
!!! TATTTCTAATGACTAGGTTT+TGG + chr2_1:51136243-51136262 Msa0210780:three_prime_UTR 25.0%
!!! AGAGTATTGATTTTGGTGTT+GGG - chr2_1:51130562-51130581 None:intergenic 30.0%
!!! ATAGAGGAGAGTATTGATTT+TGG - chr2_1:51130569-51130588 None:intergenic 30.0%
AGAAACAGAGAAAACAAAGT+GGG - chr2_1:51130789-51130808 None:intergenic 30.0%
TAGAAACAGAGAAAACAAAG+TGG - chr2_1:51130790-51130809 None:intergenic 30.0%
TTAATTCAACCCTACAAAAC+CGG + chr2_1:51131144-51131163 Msa0210780:intron 30.0%
ATTGTATTCACTGTGTGATT+GGG - chr2_1:51131578-51131597 None:intergenic 30.0%
TGAATACAATGACACAAGTA+CGG + chr2_1:51131588-51131607 Msa0210780:intron 30.0%
TTTCTAACATTATGTCAACG+GGG - chr2_1:51131864-51131883 None:intergenic 30.0%
ATATATGAACCACACGATAA+AGG - chr2_1:51131894-51131913 None:intergenic 30.0%
TTTATCGTGTGGTTCATATA+TGG + chr2_1:51131893-51131912 Msa0210780:intron 30.0%
!! GTGTTACATTGATTTGTCTT+CGG + chr2_1:51131915-51131934 Msa0210780:intron 30.0%
! CTGAACTTTTTGCATTAAAC+AGG + chr2_1:51132087-51132106 Msa0210780:intron 30.0%
!!! TTTTTAAATCTTTAGGGTGG+TGG + chr2_1:51132268-51132287 Msa0210780:intron 30.0%
TTTCAATTCTATCTCTGCTA+TGG + chr2_1:51132443-51132462 Msa0210780:intron 30.0%
TAACTTTCTTGTAGAACTTG+CGG - chr2_1:51132505-51132524 None:intergenic 30.0%
! AGAGTATTTGAACATGAACA+TGG - chr2_1:51132771-51132790 None:intergenic 30.0%
TTGCCTAAAACAGAAGAAAA+AGG - chr2_1:51132855-51132874 None:intergenic 30.0%
GATAACAATCAACAAGACAT+TGG - chr2_1:51132911-51132930 None:intergenic 30.0%
! CATTGATTAGATCCATAATG+CGG + chr2_1:51132948-51132967 Msa0210780:intron 30.0%
!!! TTATTTTGGCTTATCTGATC+TGG + chr2_1:51133043-51133062 Msa0210780:intron 30.0%
GGCATTCTAAATGTTCATAT+TGG + chr2_1:51133086-51133105 Msa0210780:intron 30.0%
ATACAATGAAAATGACTCAC+CGG - chr2_1:51133153-51133172 None:intergenic 30.0%
! TTAAGTTGTTTATCCAAACG+GGG + chr2_1:51133229-51133248 Msa0210780:intron 30.0%
AGTCCATTAGTTAGTTAGAT+TGG - chr2_1:51133293-51133312 None:intergenic 30.0%
! CACATCTTAACATAATGGAA+CGG + chr2_1:51133332-51133351 Msa0210780:intron 30.0%
TACTCCTACTGCATAAAATA+AGG - chr2_1:51133424-51133443 None:intergenic 30.0%
TATACATGTGAACAATTTCC+AGG + chr2_1:51133513-51133532 Msa0210780:CDS 30.0%
ACAGGAACTTATAAAAGATC+CGG + chr2_1:51133863-51133882 Msa0210780:intron 30.0%
! CGGTATATTTTGTTAATTGC+AGG + chr2_1:51133883-51133902 Msa0210780:intron 30.0%
TAGATAGTCATCAGAAAACA+TGG + chr2_1:51134010-51134029 Msa0210780:intron 30.0%
AATCTTTGTTCTTTCAACAG+AGG - chr2_1:51134136-51134155 None:intergenic 30.0%
CTGTTGAAAGAACAAAGATT+AGG + chr2_1:51134136-51134155 Msa0210780:intron 30.0%
AATAAAAGCTCATAGGATAG+GGG - chr2_1:51134243-51134262 None:intergenic 30.0%
CTAATAAAAGCTCATAGGAT+AGG - chr2_1:51134245-51134264 None:intergenic 30.0%
GCAAACTAATAAAAGCTCAT+AGG - chr2_1:51134250-51134269 None:intergenic 30.0%
CTTAAGCTCATAAATGTTCT+AGG - chr2_1:51134395-51134414 None:intergenic 30.0%
ATTAATTGGACCAATGGTTA+TGG + chr2_1:51134422-51134441 Msa0210780:intron 30.0%
! CTAGACTCAAACTTCTATTT+TGG - chr2_1:51134481-51134500 None:intergenic 30.0%
! TTCATACCTTTGATTTCTCA+AGG - chr2_1:51134549-51134568 None:intergenic 30.0%
! AAGTTAACTTTTATCATCGC+AGG + chr2_1:51134579-51134598 Msa0210780:intron 30.0%
! TAGTTCTTTATTTGTCTGAC+AGG + chr2_1:51134622-51134641 Msa0210780:intron 30.0%
GGAATTACATGATAGATTGA+TGG + chr2_1:51134658-51134677 Msa0210780:CDS 30.0%
GAAGTAGTATAACAGTGAAA+TGG - chr2_1:51134855-51134874 None:intergenic 30.0%
GTCTAAATAAACTGACCAAA+AGG - chr2_1:51135435-51135454 None:intergenic 30.0%
TTTGGTCAGTTTATTTAGAC+CGG + chr2_1:51135435-51135454 Msa0210780:intron 30.0%
!! GAAGTTGGTATTAATACAAC+AGG - chr2_1:51135590-51135609 None:intergenic 30.0%
! TTTTCATTTCTCAGCTATGT+TGG + chr2_1:51135668-51135687 Msa0210780:intron 30.0%
! CAAGATTTTAGATCAGGTAA+GGG - chr2_1:51135742-51135761 None:intergenic 30.0%
! CGATGCATGTCTATTTTATT+AGG - chr2_1:51135996-51136015 None:intergenic 30.0%
ACCATAGGTTATAAAATCCA+TGG + chr2_1:51136084-51136103 Msa0210780:intron 30.0%
CCATAGGTTATAAAATCCAT+GGG + chr2_1:51136085-51136104 Msa0210780:intron 30.0%
! TGCAATGGAACAATTTCTTT+TGG - chr2_1:51136123-51136142 None:intergenic 30.0%
TCATTAGAAATAACTAGAGG+AGG - chr2_1:51136235-51136254 None:intergenic 30.0%
TGAACGAACATAGAGAATTG+AGG + chr2_1:51130410-51130429 Msa0210780:five_prime_UTR 35.0%
! AGTTTTCCACACATTGACAT+TGG + chr2_1:51130500-51130519 Msa0210780:CDS 35.0%
!!! GAGTATTGATTTTGGTGTTG+GGG - chr2_1:51130561-51130580 None:intergenic 35.0%
!!! GAGAGTATTGATTTTGGTGT+TGG - chr2_1:51130563-51130582 None:intergenic 35.0%
GAATGGATGATTATGGATAG+AGG - chr2_1:51130585-51130604 None:intergenic 35.0%
TTGGAGAGAATGGATGATTA+TGG - chr2_1:51130592-51130611 None:intergenic 35.0%
TCTTCTTCTTGATCATGATG+TGG - chr2_1:51130641-51130660 None:intergenic 35.0%
! GAGAAGCATAGTAGATTTAG+GGG - chr2_1:51130741-51130760 None:intergenic 35.0%
! GGAGAAGCATAGTAGATTTA+GGG - chr2_1:51130742-51130761 None:intergenic 35.0%
! AGGAGAAGCATAGTAGATTT+AGG - chr2_1:51130743-51130762 None:intergenic 35.0%
!! AAAAGTGGACTAATTCCTAC+TGG + chr2_1:51130900-51130919 Msa0210780:CDS 35.0%
!! AAAGTGGACTAATTCCTACT+GGG + chr2_1:51130901-51130920 Msa0210780:CDS 35.0%
AAGTAACATACATACCCAGT+AGG - chr2_1:51130918-51130937 None:intergenic 35.0%
CTAAGCATGCTTACAAAGTT+TGG - chr2_1:51131177-51131196 None:intergenic 35.0%
CAAACTTTGTAAGCATGCTT+AGG + chr2_1:51131175-51131194 Msa0210780:intron 35.0%
TTGTATTCACTGTGTGATTG+GGG - chr2_1:51131577-51131596 None:intergenic 35.0%
CATTGTATTCACTGTGTGAT+TGG - chr2_1:51131579-51131598 None:intergenic 35.0%
AATTTGACACCTTTATCGTG+TGG + chr2_1:51131882-51131901 Msa0210780:intron 35.0%
ACCAAACCTAAGATAGCAAT+GGG - chr2_1:51132151-51132170 None:intergenic 35.0%
TACCAAACCTAAGATAGCAA+TGG - chr2_1:51132152-51132171 None:intergenic 35.0%
TAGTCAAACTATAGCTGACA+TGG + chr2_1:51132700-51132719 Msa0210780:intron 35.0%
ACATGGTATTAAGACTGACT+TGG - chr2_1:51132754-51132773 None:intergenic 35.0%
! GTGCCTTTTTCTTCTGTTTT+AGG + chr2_1:51132849-51132868 Msa0210780:intron 35.0%
! ATTGGTTAGCTAGTTAGGTA+GGG - chr2_1:51133275-51133294 None:intergenic 35.0%
! GTTAGATTGGTTAGCTAGTT+AGG - chr2_1:51133280-51133299 None:intergenic 35.0%
TCCATTATGTTAAGATGTGG+CGG - chr2_1:51133331-51133350 None:intergenic 35.0%
CGTTCCATTATGTTAAGATG+TGG - chr2_1:51133334-51133353 None:intergenic 35.0%
AAAATAAGGATCCATTCACG+TGG - chr2_1:51133410-51133429 None:intergenic 35.0%
!!! GGATCCTTATTTTATGCAGT+AGG + chr2_1:51133417-51133436 Msa0210780:intron 35.0%
AGAGAAAGGTGATTTCTGTA+TGG - chr2_1:51133449-51133468 None:intergenic 35.0%
TGAACAATTTCCAGGAATTG+TGG + chr2_1:51133521-51133540 Msa0210780:CDS 35.0%
GTTTCAGATTTGCAAGTTCT+AGG + chr2_1:51133592-51133611 Msa0210780:intron 35.0%
! CTTGGAAAGATGACAACTTT+TGG + chr2_1:51133631-51133650 Msa0210780:intron 35.0%
CTGTATCTCACGAAGAAAAT+TGG - chr2_1:51133772-51133791 None:intergenic 35.0%
TTCTTCGTGAGATACAGTTT+AGG + chr2_1:51133775-51133794 Msa0210780:intron 35.0%
TATAGGAAGATCAGAGTTTG+TGG + chr2_1:51133814-51133833 Msa0210780:intron 35.0%
! TACTCATGTGAGTTTTTGAC+AGG + chr2_1:51133845-51133864 Msa0210780:intron 35.0%
! GATCCAAATCTGAGGTTAAT+GGG + chr2_1:51133965-51133984 Msa0210780:intron 35.0%
ATTCCCATTAACCTCAGATT+TGG - chr2_1:51133971-51133990 None:intergenic 35.0%
ATAAAAGCTCATAGGATAGG+GGG - chr2_1:51134242-51134261 None:intergenic 35.0%
TGCCTCTTATTCGAAAATCA+AGG + chr2_1:51134324-51134343 Msa0210780:intron 35.0%
! CACCTTGATTTTCGAATAAG+AGG - chr2_1:51134329-51134348 None:intergenic 35.0%
AATTATCAAATGACGAGGCA+TGG + chr2_1:51134747-51134766 Msa0210780:CDS 35.0%
ACTAGCATCTGTTTACTTTC+TGG - chr2_1:51134930-51134949 None:intergenic 35.0%
GTGCTGTCAATGTCAAATAT+CGG + chr2_1:51135226-51135245 Msa0210780:intron 35.0%
AACTGACCAAAAGGACTAAT+GGG - chr2_1:51135426-51135445 None:intergenic 35.0%
AAACTGACCAAAAGGACTAA+TGG - chr2_1:51135427-51135446 None:intergenic 35.0%
! TGTCTGACCCTTACAATTTT+AGG + chr2_1:51135539-51135558 Msa0210780:intron 35.0%
! GTCTGACCCTTACAATTTTA+GGG + chr2_1:51135540-51135559 Msa0210780:intron 35.0%
TAAAGGAAAGGATGTGAAGT+TGG - chr2_1:51135605-51135624 None:intergenic 35.0%
! GAGAATTTTATGGCACTTAC+AGG + chr2_1:51135715-51135734 Msa0210780:CDS 35.0%
! CCAAGATTTTAGATCAGGTA+AGG - chr2_1:51135743-51135762 None:intergenic 35.0%
! CCTTACCTGATCTAAAATCT+TGG + chr2_1:51135740-51135759 Msa0210780:CDS 35.0%
TATAATGCAACATGATCCTG+AGG - chr2_1:51136055-51136074 None:intergenic 35.0%
! CCCATGGATTTTATAACCTA+TGG - chr2_1:51136088-51136107 None:intergenic 35.0%
TCCATTGCATCAACATCTAA+TGG + chr2_1:51136134-51136153 Msa0210780:intron 35.0%
AACAGTGCATCAACATCTAA+TGG - chr2_1:51136174-51136193 None:intergenic 35.0%
! TGTGTTGTTAGATGTTGTCT+AGG - chr2_1:51136202-51136221 None:intergenic 35.0%
!! TAATGACTAGGTTTTGGTCA+CGG + chr2_1:51136249-51136268 Msa0210780:three_prime_UTR 35.0%
! CTCATTGTTGCTTGCTCAAA+CGG - chr2_1:51130449-51130468 None:intergenic 40.0%
TTTGAGCAAGCAACAATGAG+AGG + chr2_1:51130449-51130468 Msa0210780:exon 40.0%
TTGAGCAAGCAACAATGAGA+GGG + chr2_1:51130450-51130469 Msa0210780:exon 40.0%
GAAACACCAATGTCAATGTG+TGG - chr2_1:51130509-51130528 None:intergenic 40.0%
TGAAGTGAAGTTGGAGAGAA+TGG - chr2_1:51130602-51130621 None:intergenic 40.0%
ATGATGTGGCTGTTGATGTT+GGG - chr2_1:51130627-51130646 None:intergenic 40.0%
TTGTCGTACGAGAAGAATCA+AGG - chr2_1:51130763-51130782 None:intergenic 40.0%
ACTTTGTAAGCATGCTTAGG+CGG + chr2_1:51131178-51131197 Msa0210780:intron 40.0%
AACCTCCAACACCTTAATTG+AGG - chr2_1:51131215-51131234 None:intergenic 40.0%
TGCGAATTCCACCTTAATTG+AGG - chr2_1:51131283-51131302 None:intergenic 40.0%
GTATTAATCTCGTTCTTGGG+CGG + chr2_1:51131316-51131335 Msa0210780:intron 40.0%
CTGTGAGAAAATGTAAGCAG+AGG + chr2_1:51131366-51131385 Msa0210780:intron 40.0%
CTAGACTGTGATCCTTTGAT+GGG + chr2_1:51131532-51131551 Msa0210780:intron 40.0%
TGTATTCACTGTGTGATTGG+GGG - chr2_1:51131576-51131595 None:intergenic 40.0%
CATTATGTCAACGGGGTTAA+AGG - chr2_1:51131857-51131876 None:intergenic 40.0%
TTACCAGCCATTGTTCCAAA+AGG + chr2_1:51132124-51132143 Msa0210780:CDS 40.0%
!!! AATGGGACCTTTTGGAACAA+TGG - chr2_1:51132134-51132153 None:intergenic 40.0%
! AAGATAGCAATGGGACCTTT+TGG - chr2_1:51132142-51132161 None:intergenic 40.0%
AAAGGTCCCATTGCTATCTT+AGG + chr2_1:51132142-51132161 Msa0210780:CDS 40.0%
TCCCATTGCTATCTTAGGTT+TGG + chr2_1:51132147-51132166 Msa0210780:CDS 40.0%
CTCATCTGATGCTTGAATTG+TGG + chr2_1:51132299-51132318 Msa0210780:CDS 40.0%
ACTGACGCATCAAATAGTTC+AGG - chr2_1:51132417-51132436 None:intergenic 40.0%
CAAATTGTCCACTAGTGCTT+TGG + chr2_1:51132641-51132660 Msa0210780:intron 40.0%
! CTCAAATTCCAAAGCACTAG+TGG - chr2_1:51132652-51132671 None:intergenic 40.0%
!! AAACAGAAGAAAAAGGCACC+TGG - chr2_1:51132848-51132867 None:intergenic 40.0%
AAGTGAGAACATCCGCATTA+TGG - chr2_1:51132963-51132982 None:intergenic 40.0%
CTGGAGAAGACAAACAAAGA+TGG + chr2_1:51133062-51133081 Msa0210780:intron 40.0%
GAGAAGACAAACAAAGATGG+CGG + chr2_1:51133065-51133084 Msa0210780:intron 40.0%
CAAATCCTCTGATGGAATGA+AGG - chr2_1:51133117-51133136 None:intergenic 40.0%
GATTTGCACAGAAGATATGC+CGG + chr2_1:51133131-51133150 Msa0210780:intron 40.0%
TTAAAAACACAAGCCCCGTT+TGG - chr2_1:51133245-51133264 None:intergenic 40.0%
! TTGGTTAGCTAGTTAGGTAG+GGG - chr2_1:51133274-51133293 None:intergenic 40.0%
! GATTGGTTAGCTAGTTAGGT+AGG - chr2_1:51133276-51133295 None:intergenic 40.0%
TCCGCCACATCTTAACATAA+TGG + chr2_1:51133327-51133346 Msa0210780:intron 40.0%
TGCATCATTGAATGGTTGAG+TGG + chr2_1:51133383-51133402 Msa0210780:intron 40.0%
AACAAGTCAACCACAATTCC+TGG - chr2_1:51133534-51133553 None:intergenic 40.0%
TGGCTTATAGCTGAGTTACT+AGG - chr2_1:51133752-51133771 None:intergenic 40.0%
ATGTAGAAAGCTCACATGAG+AGG + chr2_1:51133943-51133962 Msa0210780:intron 40.0%
! GGATCCAAATCTGAGGTTAA+TGG + chr2_1:51133964-51133983 Msa0210780:intron 40.0%
! TCTGATGACTATCTAGAGTC+TGG - chr2_1:51134005-51134024 None:intergenic 40.0%
GCATAATTCCACTACTACAG+TGG + chr2_1:51134083-51134102 Msa0210780:intron 40.0%
TGTAACTTCCACTGTAGTAG+TGG - chr2_1:51134094-51134113 None:intergenic 40.0%
TAAAAGCTCATAGGATAGGG+GGG - chr2_1:51134241-51134260 None:intergenic 40.0%
! AACTTTTATCATCGCAGGCA+TGG + chr2_1:51134584-51134603 Msa0210780:intron 40.0%
TTGTCTGACAGGTTAGTACT+TGG + chr2_1:51134633-51134652 Msa0210780:intron 40.0%
! CATGATAGATTGATGGCCAA+TGG + chr2_1:51134665-51134684 Msa0210780:CDS 40.0%
GTTCACCATAAAACGACCAT+TGG - chr2_1:51134684-51134703 None:intergenic 40.0%
! GCATTATCCAAAGCATTTCC+TGG + chr2_1:51134791-51134810 Msa0210780:CDS 40.0%
TACTTGTCCAGGAAATGCTT+TGG - chr2_1:51134801-51134820 None:intergenic 40.0%
AAATAGACGCTTACTTGTCC+AGG - chr2_1:51134812-51134831 None:intergenic 40.0%
TCAATGTCAAATATCGGCCA+TGG + chr2_1:51135232-51135251 Msa0210780:intron 40.0%
!!! GTCTTTTTGGGACGTTTTAC+CGG - chr2_1:51135457-51135476 None:intergenic 40.0%
ATGTTGGAAGAGAATGCCAA+AGG + chr2_1:51135684-51135703 Msa0210780:CDS 40.0%
GAAGAGAATGCCAAAGGAAA+CGG + chr2_1:51135690-51135709 Msa0210780:CDS 40.0%
AAGAGAATGCCAAAGGAAAC+GGG + chr2_1:51135691-51135710 Msa0210780:CDS 40.0%
AAATTCTCACCCGTTTCCTT+TGG - chr2_1:51135703-51135722 None:intergenic 40.0%
! GGAAACGGGTGAGAATTTTA+TGG + chr2_1:51135705-51135724 Msa0210780:CDS 40.0%
! GCAGACCAAGATTTTAGATC+AGG - chr2_1:51135748-51135767 None:intergenic 40.0%
TTGGATGTTTCAATTGCCCA+TGG - chr2_1:51136104-51136123 None:intergenic 40.0%
GCCATTAGATGTTGATGCAA+TGG - chr2_1:51136138-51136157 None:intergenic 40.0%
TGCATCAACATCTAATGGCT+AGG - chr2_1:51136139-51136158 None:intergenic 40.0%
TGTTGGGCATGAAGTGAAGT+TGG - chr2_1:51130611-51130630 None:intergenic 45.0%
CATGATGTGGCTGTTGATGT+TGG - chr2_1:51130628-51130647 None:intergenic 45.0%
! TACAAAGTTTGGAGTCGAGC+CGG - chr2_1:51131166-51131185 None:intergenic 45.0%
!! GACCTCAATTAAGGTGTTGG+AGG + chr2_1:51131210-51131229 Msa0210780:intron 45.0%
! GGTGTTGGAGGTTGTATTGA+AGG + chr2_1:51131222-51131241 Msa0210780:intron 45.0%
GCTAGACTGTGATCCTTTGA+TGG + chr2_1:51131531-51131550 Msa0210780:intron 45.0%
TGTGATCCTTTGATGGGATC+AGG + chr2_1:51131538-51131557 Msa0210780:intron 45.0%
CATCATCCTGATCCCATCAA+AGG - chr2_1:51131547-51131566 None:intergenic 45.0%
CTTTGATGGGATCAGGATGA+TGG + chr2_1:51131545-51131564 Msa0210780:intron 45.0%
TCTGATGCTTGAATTGTGGC+CGG + chr2_1:51132303-51132322 Msa0210780:CDS 45.0%
GACGCATCAAATAGTTCAGG+TGG - chr2_1:51132414-51132433 None:intergenic 45.0%
TGATGCCTTCATTCCATCAG+AGG + chr2_1:51133109-51133128 Msa0210780:intron 45.0%
CTTCTGTGCAAATCCTCTGA+TGG - chr2_1:51133125-51133144 None:intergenic 45.0%
ACGGTGAAGCACAATTCAAC+TGG + chr2_1:51133351-51133370 Msa0210780:intron 45.0%
!! GTGGTTGACTTGTTCTCTGA+CGG + chr2_1:51133540-51133559 Msa0210780:CDS 45.0%
! AGTTTTACCTCAGCTGCAAG+AGG + chr2_1:51133566-51133585 Msa0210780:CDS 45.0%
AAACATACCTCTTGCAGCTG+AGG - chr2_1:51133576-51133595 None:intergenic 45.0%
CATGAGAGGATCCAAATCTG+AGG + chr2_1:51133957-51133976 Msa0210780:intron 45.0%
AAAAGCTCATAGGATAGGGG+GGG - chr2_1:51134240-51134259 None:intergenic 45.0%
CTGACAGGTTAGTACTTGGT+TGG + chr2_1:51134637-51134656 Msa0210780:intron 45.0%
!! GATGGCCAATGGTCGTTTTA+TGG + chr2_1:51134676-51134695 Msa0210780:CDS 45.0%
!! GGTCGTTTTATGGTGAACTG+CGG + chr2_1:51134686-51134705 Msa0210780:CDS 45.0%
!! GCATATAAGAGCACTCATGC+AGG + chr2_1:51135015-51135034 Msa0210780:intron 45.0%
GGCGTCATCATATCGGATTA+TGG - chr2_1:51135337-51135356 None:intergenic 45.0%
GCTTTGTGGCGTCATCATAT+CGG - chr2_1:51135344-51135363 None:intergenic 45.0%
! GATATGATGACGCCACAAAG+CGG + chr2_1:51135343-51135362 Msa0210780:intron 45.0%
CTCCTGTGCTTAAAGGAGAT+GGG - chr2_1:51135777-51135796 None:intergenic 45.0%
ACTCCTGTGCTTAAAGGAGA+TGG - chr2_1:51135778-51135797 None:intergenic 45.0%
TCCTTTAAGCACAGGAGTGA+TGG + chr2_1:51135780-51135799 Msa0210780:CDS 45.0%
TCCATCACTCCTGTGCTTAA+AGG - chr2_1:51135784-51135803 None:intergenic 45.0%
!! TAAGCACAGGAGTGATGGAT+TGG + chr2_1:51135785-51135804 Msa0210780:CDS 45.0%
AAGCATGCTTAGGCGGCTTT+CGG + chr2_1:51131185-51131204 Msa0210780:intron 50.0%
CTTTCGGCGGACCTCAATTA+AGG + chr2_1:51131201-51131220 Msa0210780:intron 50.0%
GCGGACCTCAATTAAGGTGT+TGG + chr2_1:51131207-51131226 Msa0210780:intron 50.0%
GGTAACCCACATGCGCAATT+AGG + chr2_1:51131243-51131262 Msa0210780:intron 50.0%
AACCCACATGCGCAATTAGG+CGG + chr2_1:51131246-51131265 Msa0210780:intron 50.0%
ATGCGCAATTAGGCGGCTTT+GGG + chr2_1:51131253-51131272 Msa0210780:intron 50.0%
CTTTGGGCGGACCTCAATTA+AGG + chr2_1:51131269-51131288 Msa0210780:intron 50.0%
GCAGCTGTAACAGCTTCTCA+CGG - chr2_1:51131482-51131501 None:intergenic 50.0%
TGGAACAATGGCTGGTAAGC+TGG - chr2_1:51132122-51132141 None:intergenic 50.0%
!!! GGACCTTTTGGAACAATGGC+TGG - chr2_1:51132130-51132149 None:intergenic 50.0%
! CGTTTTATGGTGAACTGCGG+CGG + chr2_1:51134689-51134708 Msa0210780:CDS 50.0%
! GTTTTATGGTGAACTGCGGC+GGG + chr2_1:51134690-51134709 Msa0210780:CDS 50.0%
GAGCCAAAATCCTGCCATTC+CGG - chr2_1:51135369-51135388 None:intergenic 50.0%
CAAAAGGACTAATGGGAGCG+AGG - chr2_1:51135419-51135438 None:intergenic 50.0%
! CTCGCTCCCATTAGTCCTTT+TGG + chr2_1:51135417-51135436 Msa0210780:intron 50.0%
GTCCCATCTCCTTTAAGCAC+AGG + chr2_1:51135772-51135791 Msa0210780:CDS 50.0%
!! GGAGTCGAGCCGGTTTTGTA+GGG - chr2_1:51131156-51131175 None:intergenic 55.0%
!! TGGAGTCGAGCCGGTTTTGT+AGG - chr2_1:51131157-51131176 None:intergenic 55.0%
AGCCGCCTAATTGCGCATGT+GGG - chr2_1:51131251-51131270 None:intergenic 55.0%
AAGCCGCCTAATTGCGCATG+TGG - chr2_1:51131252-51131271 None:intergenic 55.0%
CATGCGCAATTAGGCGGCTT+TGG + chr2_1:51131252-51131271 Msa0210780:intron 55.0%
TGGGCGGACCTCAATTAAGG+TGG + chr2_1:51131272-51131291 Msa0210780:intron 55.0%
TCACTGTGTGATTGGGGGCT+TGG - chr2_1:51131571-51131590 None:intergenic 55.0%
!! CAGCCTTCGAGTTGCAATGC+CGG - chr2_1:51132325-51132344 None:intergenic 55.0%
GGCATTGCAACTCGAAGGCT+GGG + chr2_1:51132324-51132343 Msa0210780:CDS 55.0%
! AGCTAGTTAGGTAGGGGCAC+TGG - chr2_1:51133268-51133287 None:intergenic 55.0%
GGTTGAGTGGACCACGTGAA+TGG + chr2_1:51133396-51133415 Msa0210780:intron 55.0%
! AGCACCTTGGCGGATATTGG+TGG + chr2_1:51135256-51135275 Msa0210780:intron 55.0%
! ACCTTGGCGGATATTGGTGG+TGG + chr2_1:51135259-51135278 Msa0210780:intron 55.0%
TCGGCTGAAATTGGGCATGG+CGG - chr2_1:51135297-51135316 None:intergenic 55.0%
!! GTGTCGGCTGAAATTGGGCA+TGG - chr2_1:51135300-51135319 None:intergenic 55.0%
!! CCGACGTGTCGGCTGAAATT+GGG - chr2_1:51135305-51135324 None:intergenic 55.0%
CCCAATTTCAGCCGACACGT+CGG + chr2_1:51135302-51135321 Msa0210780:intron 55.0%
CCAATTTCAGCCGACACGTC+GGG + chr2_1:51135303-51135322 Msa0210780:intron 55.0%
! AGCCGACACGTCGGGATTTT+CGG + chr2_1:51135311-51135330 Msa0210780:intron 55.0%
CACGGCGAACACCTCGTTTA+CGG + chr2_1:51136267-51136286 Msa0210780:three_prime_UTR 55.0%
GGACTGACAGTCCGTAAACG+AGG - chr2_1:51136281-51136300 None:intergenic 55.0%
CATGCTTAGGCGGCTTTCGG+CGG + chr2_1:51131188-51131207 Msa0210780:intron 60.0%
!! CGCAATTAGGCGGCTTTGGG+CGG + chr2_1:51131256-51131275 Msa0210780:intron 60.0%
TGGCCGGCATTGCAACTCGA+AGG + chr2_1:51132319-51132338 Msa0210780:CDS 60.0%
CGGCATTGCAACTCGAAGGC+TGG + chr2_1:51132323-51132342 Msa0210780:CDS 60.0%
TGAACTGCGGCGGGATCGAT+GGG + chr2_1:51134699-51134718 Msa0210780:CDS 60.0%
TATCGGCCATGGCAGCACCT+TGG + chr2_1:51135243-51135262 Msa0210780:intron 60.0%
!! TATCCGCCAAGGTGCTGCCA+TGG - chr2_1:51135252-51135271 None:intergenic 60.0%
! GGCAGCACCTTGGCGGATAT+TGG + chr2_1:51135253-51135272 Msa0210780:intron 60.0%
GCCACCACCAATATCCGCCA+AGG - chr2_1:51135263-51135282 None:intergenic 60.0%
!! CCCGACGTGTCGGCTGAAAT+TGG - chr2_1:51135306-51135325 None:intergenic 60.0%
GGCCGAAAATCCCGACGTGT+CGG - chr2_1:51135316-51135335 None:intergenic 60.0%
! TGATGACGCCACAAAGCGGC+CGG + chr2_1:51135347-51135366 Msa0210780:intron 60.0%
! CGGCCGGAATGGCAGGATTT+TGG + chr2_1:51135363-51135382 Msa0210780:intron 60.0%
GTGAACTGCGGCGGGATCGA+TGG + chr2_1:51134698-51134717 Msa0210780:CDS 65.0%
GAACTGCGGCGGGATCGATG+GGG + chr2_1:51134700-51134719 Msa0210780:CDS 65.0%
ACGCCACAAAGCGGCCGGAA+TGG + chr2_1:51135352-51135371 Msa0210780:intron 65.0%
! CTGCCATTCCGGCCGCTTTG+TGG - chr2_1:51135358-51135377 None:intergenic 65.0%
CACAAAGCGGCCGGAATGGC+AGG + chr2_1:51135356-51135375 Msa0210780:intron 65.0%
GGCGGGATCGATGGGGTGGA+TGG + chr2_1:51134707-51134726 Msa0210780:CDS 70.0%
CGGCCATGGCAGCACCTTGG+CGG + chr2_1:51135246-51135265 Msa0210780:intron 70.0%
CTGCGGCGGGATCGATGGGG+TGG + chr2_1:51134703-51134722 Msa0210780:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 51130397 51136312 51130397 ID=Msa0210780;Name=Msa0210780
chr2_1 mRNA 51130397 51136312 51130397 ID=Msa0210780-mRNA-1;Parent=Msa0210780;Name=Msa0210780-mRNA-1;_AED=0.23;_eAED=0.23;_QI=67|0.85|0.87|1|0.71|0.62|8|276|303
chr2_1 exon 51130397 51130773 51130397 ID=Msa0210780-mRNA-1:exon:14202;Parent=Msa0210780-mRNA-1
chr2_1 exon 51130870 51130922 51130870 ID=Msa0210780-mRNA-1:exon:14203;Parent=Msa0210780-mRNA-1
chr2_1 exon 51132109 51132168 51132109 ID=Msa0210780-mRNA-1:exon:14204;Parent=Msa0210780-mRNA-1
chr2_1 exon 51132283 51132360 51132283 ID=Msa0210780-mRNA-1:exon:14205;Parent=Msa0210780-mRNA-1
chr2_1 exon 51133507 51133587 51133507 ID=Msa0210780-mRNA-1:exon:14206;Parent=Msa0210780-mRNA-1
chr2_1 exon 51134644 51134817 51134644 ID=Msa0210780-mRNA-1:exon:14207;Parent=Msa0210780-mRNA-1
chr2_1 exon 51135682 51136004 51135682 ID=Msa0210780-mRNA-1:exon:14208;Parent=Msa0210780-mRNA-1
chr2_1 exon 51136204 51136312 51136204 ID=Msa0210780-mRNA-1:exon:14209;Parent=Msa0210780-mRNA-1
chr2_1 five_prime_UTR 51130397 51130463 51130397 ID=Msa0210780-mRNA-1:five_prime_utr;Parent=Msa0210780-mRNA-1
chr2_1 CDS 51130464 51130773 51130464 ID=Msa0210780-mRNA-1:cds;Parent=Msa0210780-mRNA-1
chr2_1 CDS 51130870 51130922 51130870 ID=Msa0210780-mRNA-1:cds;Parent=Msa0210780-mRNA-1
chr2_1 CDS 51132109 51132168 51132109 ID=Msa0210780-mRNA-1:cds;Parent=Msa0210780-mRNA-1
chr2_1 CDS 51132283 51132360 51132283 ID=Msa0210780-mRNA-1:cds;Parent=Msa0210780-mRNA-1
chr2_1 CDS 51133507 51133587 51133507 ID=Msa0210780-mRNA-1:cds;Parent=Msa0210780-mRNA-1
chr2_1 CDS 51134644 51134817 51134644 ID=Msa0210780-mRNA-1:cds;Parent=Msa0210780-mRNA-1
chr2_1 CDS 51135682 51135837 51135682 ID=Msa0210780-mRNA-1:cds;Parent=Msa0210780-mRNA-1
chr2_1 three_prime_UTR 51135838 51136004 51135838 ID=Msa0210780-mRNA-1:three_prime_utr;Parent=Msa0210780-mRNA-1
chr2_1 three_prime_UTR 51136204 51136312 51136204 ID=Msa0210780-mRNA-1:three_prime_utr;Parent=Msa0210780-mRNA-1
Gene Sequence

>Msa0210780

ATGAGAGGGTGCTGCTGCGTATTGCCATTTAGTTTTAGTTTTCCACACATTGACATTGGTGTTTCTTATTCTCAACATTCTTTCACTATTCACACCCCAACACCAAAATCAATACTCTCCTCTATCCATAATCATCCATTCTCTCCAACTTCACTTCATGCCCAACATCAACAGCCACATCATGATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGCTTTCAAATTCTAACATCTGTTAAAACTGATTACAATCATATCATGATTGTTGATACCCCTAAATCTACTATGCTTCTCCTTGATTCTTCTCATAATGTTCATAGCATTCTTTATAAGGACAAAAAGTGGACTAATTCCTACTGGGATGAGTTTGCCAGCTTACCAGCCATTGTTCCAAAAGGTCCCATTGCTATCTTAGGTTTGGGTGGTGGAACTGCTGCTCATCTGATGCTTGAATTGTGGCCGGCATTGCAACTCGAAGGCTGGGAGATTGATGACATTCTAACTTATACATGTGAACAATTTCCAGGAATTGTGGTTGACTTGTTCTCTGACGGAAAAGTTTTACCTCAGCTGCAAGAGGTTAGTACTTGGTTGGAATTACATGATAGATTGATGGCCAATGGTCGTTTTATGGTGAACTGCGGCGGGATCGATGGGGTGGATGGAAGTACTGATCCAAAAAAATTATCAAATGACGAGGCATGGTTATTAAATGCTGCAATCAAAGCATTATCCAAAGCATTTCCTGGACAACTATGTTGGAAGAGAATGCCAAAGGAAACGGGTGAGAATTTTATGGCACTTACAGGACCCTTACCTGATCTAAAATCTTGGTCTGCTAATGTCCCATCTCCTTTAAGCACAGGAGTGATGGATTGGAGACCTTGTGAAATAGTTTCTAGAATTTGA

Protein sequence

>Msa0210780

MRGCCCVLPFSFSFPHIDIGVSYSQHSFTIHTPTPKSILSSIHNHPFSPTSLHAQHQQPHHDQEEEEEEEEESFQILTSVKTDYNHIMIVDTPKSTMLLLDSSHNVHSILYKDKKWTNSYWDEFASLPAIVPKGPIAILGLGGGTAAHLMLELWPALQLEGWEIDDILTYTCEQFPGIVVDLFSDGKVLPQLQEVSTWLELHDRLMANGRFMVNCGGIDGVDGSTDPKKLSNDEAWLLNAAIKALSKAFPGQLCWKRMPKETGENFMALTGPLPDLKSWSANVPSPLSTGVMDWRPCEIVSRI*