AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1030820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1030820 MtrunA17_Chr7g0252041 96.920 487 3 5 1 487 1 475 0.0 948
Msa1030820 MtrunA17_Chr3g0131691 67.483 286 60 8 215 486 217 483 5.64e-119 357
Msa1030820 MtrunA17_Chr3g0141091 44.724 199 82 5 288 485 163 334 6.91e-40 147
Msa1030820 MtrunA17_Chr5g0411541 44.878 205 86 5 285 485 141 322 1.26e-37 140
Msa1030820 MtrunA17_Chr1g0211081 34.742 213 118 5 285 479 304 513 7.94e-31 125
Msa1030820 MtrunA17_Chr3g0089131 67.241 58 19 0 403 460 5 62 5.74e-21 87.4
Msa1030820 MtrunA17_Chr8g0365711 29.787 188 123 3 291 478 237 415 1.31e-18 87.8
Msa1030820 MtrunA17_Chr2g0298751 33.163 196 118 6 289 477 43 232 1.55e-18 85.1
Msa1030820 MtrunA17_Chr1g0185621 34.463 177 104 5 288 460 465 633 2.51e-18 88.2
Msa1030820 MtrunA17_Chr3g0135471 69.767 43 13 0 418 460 1 43 3.10e-15 70.5
Msa1030820 MtrunA17_Chr5g0400671 29.412 187 110 5 298 478 154 324 1.58e-14 74.7
Msa1030820 MtrunA17_Chr5g0400661 26.263 198 135 4 291 478 138 334 2.03e-14 74.3
Msa1030820 MtrunA17_Chr2g0318461 67.442 43 14 0 418 460 1 43 2.36e-14 67.8
Msa1030820 MtrunA17_Chr4g0002801 29.787 188 112 7 300 478 154 330 4.26e-14 73.6
Msa1030820 MtrunA17_Chr2g0280161 28.931 159 98 3 300 456 179 324 7.14e-14 72.8
Msa1030820 MtrunA17_Chr8g0346161 57.895 57 24 0 296 352 289 345 7.87e-14 73.6
Msa1030820 MtrunA17_Chr4g0052841 25.510 196 133 4 289 479 283 470 8.77e-14 73.6
Msa1030820 MtrunA17_Chr2g0320291 28.758 153 94 1 286 438 121 258 8.80e-14 72.4
Msa1030820 MtrunA17_Chr4g0028071 51.562 64 31 0 291 354 142 205 9.96e-14 72.4
Msa1030820 MtrunA17_Chr7g0275821 45.977 87 44 1 296 379 250 336 1.13e-13 72.8
Msa1030820 MtrunA17_Chr8g0346151 60.000 55 22 0 296 350 277 331 1.36e-13 72.8
Msa1030820 MtrunA17_Chr3g0089121 50.000 80 29 2 327 404 1 71 2.83e-13 66.2
Msa1030820 MtrunA17_Chr4g0049331 26.540 211 121 6 275 469 107 299 3.13e-13 70.5
Msa1030820 MtrunA17_Chr8g0366751 33.133 166 96 4 296 454 460 617 4.30e-13 71.6
Msa1030820 MtrunA17_Chr4g0052821 27.551 196 125 5 291 479 283 468 4.40e-13 71.2
Msa1030820 MtrunA17_Chr4g0002781 28.856 201 123 8 285 478 162 349 5.63e-13 70.1
Msa1030820 MtrunA17_Chr7g0260841 42.045 88 44 1 273 353 323 410 1.13e-12 70.1
Msa1030820 MtrunA17_Chr4g0033391 28.293 205 128 5 273 476 125 311 1.64e-12 68.6
Msa1030820 MtrunA17_Chr3g0089111 42.982 114 54 4 224 327 113 225 1.92e-12 67.0
Msa1030820 MtrunA17_Chr5g0411341 29.231 195 119 5 296 482 491 674 2.01e-12 69.7
Msa1030820 MtrunA17_Chr4g0054571 28.169 142 97 2 300 441 152 288 8.99e-12 66.2
Msa1030820 MtrunA17_Chr5g0400621 30.189 159 97 4 299 456 158 303 9.31e-12 66.2
Msa1030820 MtrunA17_Chr7g0225901 27.461 193 111 5 273 456 62 234 1.32e-11 64.7
Msa1030820 MtrunA17_Chr8g0336681 26.752 157 110 3 300 456 158 309 1.70e-11 65.5
Msa1030820 MtrunA17_Chr2g0307131 27.184 206 126 6 273 473 156 342 2.16e-11 65.5
Msa1030820 MtrunA17_Chr4g0033291 27.273 220 139 6 259 476 119 319 4.42e-11 64.3
Msa1030820 MtrunA17_Chr2g0333621 25.248 202 134 4 284 479 122 312 4.67e-11 63.9
Msa1030820 MtrunA17_Chr5g0404921 62.264 106 18 1 53 158 1 84 4.95e-11 59.7
Msa1030820 MtrunA17_Chr0c01g0489461 28.571 217 116 9 267 450 157 367 6.94e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1030820 AT3G26744.1 54.847 392 140 10 121 486 113 493 6.72e-117 353
Msa1030820 AT3G26744.4 54.847 392 140 10 121 486 113 493 6.72e-117 353
Msa1030820 AT3G26744.2 54.847 392 140 10 121 486 113 493 6.72e-117 353
Msa1030820 AT1G12860.1 56.749 363 118 9 130 486 120 449 3.47e-112 339
Msa1030820 AT3G26744.6 53.825 366 132 10 121 460 113 467 2.94e-100 309
Msa1030820 AT1G12860.2 54.896 337 113 9 130 460 120 423 3.61e-95 295
Msa1030820 AT5G65640.1 44.175 206 95 4 283 485 160 348 1.00e-37 141
Msa1030820 AT5G10570.1 42.927 205 87 4 283 485 136 312 1.97e-33 129
Msa1030820 AT2G16910.1 40.102 197 99 6 297 479 313 504 6.03e-31 126
Msa1030820 AT5G65640.2 70.270 74 19 1 283 353 160 233 1.93e-21 94.7
Msa1030820 AT1G12860.3 38.537 205 95 8 130 329 120 298 1.38e-18 87.0
Msa1030820 AT5G57150.1 32.240 183 115 4 296 475 52 228 1.28e-17 82.8
Msa1030820 AT3G26744.5 36.325 234 114 9 121 328 113 337 5.49e-17 82.8
Msa1030820 AT4G29930.2 30.323 155 88 3 297 451 53 187 2.51e-16 78.6
Msa1030820 AT5G57150.3 33.125 160 98 4 296 452 53 206 8.30e-16 77.0
Msa1030820 AT4G29930.5 30.323 155 88 3 297 451 53 187 9.07e-16 77.0
Msa1030820 AT5G57150.2 33.333 159 97 4 296 451 53 205 1.07e-15 76.6
Msa1030820 AT5G57150.5 33.333 159 97 4 296 451 52 204 1.28e-15 76.3
Msa1030820 AT2G28160.1 36.283 113 59 2 242 354 88 187 2.91e-15 77.0
Msa1030820 AT4G29930.6 30.323 155 91 4 297 451 53 190 2.92e-15 75.5
Msa1030820 AT2G28160.2 36.283 113 59 2 242 354 88 187 3.40e-15 77.0
Msa1030820 AT5G57150.4 33.333 159 97 4 296 451 53 205 7.90e-15 75.1
Msa1030820 AT2G46510.1 46.914 81 35 1 281 353 370 450 8.06e-15 77.4
Msa1030820 AT4G29930.4 47.761 67 35 0 297 363 53 119 1.79e-14 72.0
Msa1030820 AT4G09820.1 33.333 153 67 4 291 440 353 473 1.90e-14 76.3
Msa1030820 AT4G29930.1 47.761 67 35 0 297 363 53 119 3.85e-14 72.8
Msa1030820 AT4G29930.3 47.059 68 36 0 296 363 52 119 5.18e-14 72.4
Msa1030820 AT4G29930.7 47.059 68 36 0 296 363 52 119 5.18e-14 72.4
Msa1030820 AT1G01260.1 40.650 123 56 3 245 362 392 502 1.09e-13 73.9
Msa1030820 AT1G01260.2 40.650 123 56 3 245 362 392 502 1.09e-13 73.9
Msa1030820 AT1G01260.3 40.650 123 56 3 245 362 392 502 1.09e-13 73.9
Msa1030820 AT4G17880.1 30.159 189 114 6 296 482 414 586 2.02e-13 73.2
Msa1030820 AT5G46760.1 31.707 164 94 5 296 454 413 563 4.00e-13 72.0
Msa1030820 AT1G32640.1 29.744 195 108 6 296 482 450 623 5.62e-13 71.6
Msa1030820 AT4G00870.1 47.761 67 33 1 291 355 240 306 2.48e-12 68.9
Msa1030820 AT1G10610.3 41.379 87 46 1 274 355 138 224 3.19e-12 68.2
Msa1030820 AT2G22760.2 23.669 169 118 4 289 456 110 268 4.22e-12 67.0
Msa1030820 AT1G10610.2 41.379 87 46 1 274 355 205 291 5.32e-12 68.2
Msa1030820 AT5G46830.1 31.250 192 96 8 296 473 341 510 5.59e-12 68.2
Msa1030820 AT1G10610.1 41.379 87 46 1 274 355 235 321 7.12e-12 67.8
Msa1030820 AT2G22760.1 23.669 169 118 4 289 456 110 268 1.22e-11 65.9
Msa1030820 AT2G22770.1 26.752 157 110 3 289 441 123 278 4.74e-11 64.3
Msa1030820 AT4G16430.1 41.975 81 40 1 280 353 295 375 5.44e-11 65.1
Msa1030820 AT2G22750.5 27.273 143 97 2 299 441 151 286 7.87e-11 63.9
Msa1030820 AT2G22750.3 27.273 143 97 2 299 441 155 290 9.25e-11 63.5
Msa1030820 AT2G22750.4 27.273 143 97 2 299 441 155 290 9.28e-11 63.5

Find 162 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCATTTCAAATGGGTTAT+TGG 0.117688 7_1:-65071389 None:intergenic
GTTTGAAAATGGATTCTTTA+TGG 0.140965 7_1:+65071411 Msa1030820:CDS
GAATGATGAAGGAGAGAAAA+AGG 0.194051 7_1:-65070894 None:intergenic
TTTGAAATGGGGTTTGAAAA+TGG 0.212995 7_1:+65071400 Msa1030820:CDS
AATCTATGGTGTTTGTGTTT+TGG 0.283895 7_1:-65071303 None:intergenic
TCAGGTTCGGGTTGTGGTTC+GGG 0.284310 7_1:-65071190 None:intergenic
TTTGAAAATGGATTCTTTAT+GGG 0.287664 7_1:+65071412 Msa1030820:CDS
CTACGGTTAGTACCTCTATA+AGG 0.292591 7_1:-65073476 None:intergenic
TAGAAGTTGTTGTTGTTATC+AGG 0.296637 7_1:-65071208 None:intergenic
ATCAGGTTCGGGTTGTGGTT+CGG 0.308632 7_1:-65071191 None:intergenic
TTGTGTTTAGGTTCGGAGTT+AGG 0.321519 7_1:-65071103 None:intergenic
ACCAATAACCCATTTGAAAT+GGG 0.328953 7_1:+65071388 Msa1030820:CDS
TCAGCCATCAAATTCTTTGC+AGG 0.331079 7_1:-65071877 None:intergenic
GTTGTTGTTGTTATCAGGTT+CGG 0.335301 7_1:-65071203 None:intergenic
TACCAATAACCCATTTGAAA+TGG 0.336052 7_1:+65071387 Msa1030820:CDS
TGGATTTGAAATTGAATCTA+TGG 0.348162 7_1:-65071317 None:intergenic
AGAGAAAGGTGGAGAAGAGC+TGG 0.362560 7_1:+65071701 Msa1030820:CDS
TTGTTGTTGTTATCAGGTTC+GGG 0.363227 7_1:-65071202 None:intergenic
GCTATCTACCATGAGGGCTT+TGG 0.366010 7_1:+65073054 Msa1030820:CDS
TCAAATGGGACTGTTGTTAC+TGG 0.376369 7_1:+65071820 Msa1030820:CDS
AACAAGAATCACCTTCTTCA+TGG 0.390694 7_1:+65071074 Msa1030820:CDS
TACAGGTGGAAGTTAGAGTA+AGG 0.391657 7_1:+65072978 Msa1030820:intron
TAAGCTATTCTATCTGATCT+TGG 0.393629 7_1:-65073567 None:intergenic
AGGGACCCACCCATGAAAAC+AGG 0.394342 7_1:-65071457 None:intergenic
TTGTTATCAGGTTCGGGTTG+TGG 0.401185 7_1:-65071196 None:intergenic
TGTGGTTCGGGTTTGAAGAA+AGG 0.402846 7_1:-65071178 None:intergenic
AATGATTTGAATAATTCAAA+TGG 0.403338 7_1:+65071805 Msa1030820:CDS
CGCTGTTTCAGAAGCGTCGT+GGG 0.407593 7_1:+65071635 Msa1030820:CDS
GCTGTTATCAGTTGTTTCAA+TGG 0.414184 7_1:+65073103 Msa1030820:CDS
TTTATCTTGTGTGTGAATAA+AGG 0.420835 7_1:-65070849 None:intergenic
GTGGTTGTTGTGTTTAGGTT+CGG 0.421630 7_1:-65071110 None:intergenic
TGTTCGTGGTTGTTGTGTTT+AGG 0.423157 7_1:-65071115 None:intergenic
TGATGATGTTGTTGTGGTTG+TGG 0.425371 7_1:-65071574 None:intergenic
ATGAACTTGTTGAGGTGGTA+AGG 0.429477 7_1:-65071011 None:intergenic
TAATAATCTTCATAATGAAC+TGG 0.430336 7_1:+65072608 Msa1030820:CDS
GAAGGTTGCAGCAGTGAGCC+AGG 0.431678 7_1:-65072642 None:intergenic
GCTTCCTGCAAAGAATTTGA+TGG 0.433280 7_1:+65071873 Msa1030820:CDS
CTTCTTGTTCCTGCTAGTAA+AGG 0.443704 7_1:+65073530 Msa1030820:three_prime_UTR
CAGCACTGCTTTAATTTGCT+CGG 0.447013 7_1:-65073396 None:intergenic
TAGATCCTCTTTGACTCGAC+AGG 0.449537 7_1:-65072712 None:intergenic
GTGGTTCGGGTTTGAAGAAA+GGG 0.450268 7_1:-65071177 None:intergenic
AGCACTGCTTTAATTTGCTC+GGG 0.451779 7_1:-65073395 None:intergenic
GAAGAAGGAAGTGGTGGTGG+TGG 0.454840 7_1:+65071727 Msa1030820:CDS
GCAATAGCTATTGCTATGGC+TGG 0.459874 7_1:+65071145 Msa1030820:CDS
TATCATTGAGTTTCTTCCTC+CGG 0.461791 7_1:-65071906 None:intergenic
CCTTGGATTGGATGTTCAGC+AGG 0.462769 7_1:+65073081 Msa1030820:CDS
GATAGAATAGCTTAATCTGT+AGG 0.462905 7_1:+65073576 Msa1030820:three_prime_UTR
GAAGGAAGTGGTGGTGGTGG+TGG 0.463647 7_1:+65071730 Msa1030820:CDS
ATGATAGGTTGTATATGCTT+AGG 0.465770 7_1:+65071923 Msa1030820:CDS
GGCTTTGGATAACCTTGGAT+TGG 0.469562 7_1:+65073069 Msa1030820:CDS
TTCCCCACGGTCTCCAACCT+CGG 0.472317 7_1:-65071670 None:intergenic
GAGAAGAGCTGGGAAGAAGA+AGG 0.472684 7_1:+65071712 Msa1030820:CDS
AATTATGATTCTGATGAGAA+TGG 0.474232 7_1:+65071781 Msa1030820:CDS
GGCGTTGGAGATTCCGAGGT+TGG 0.477216 7_1:+65071657 Msa1030820:CDS
GCAGCAATGCAGAGAAGGCC+AGG 0.479876 7_1:+65073364 Msa1030820:intron
TCGGTGGAGTGGGTGTCAAC+GGG 0.480196 7_1:-65072683 None:intergenic
TTTGCTCGGGGAGTACATCC+TGG 0.485199 7_1:-65073382 None:intergenic
ATGATTTGAATAATTCAAAT+GGG 0.485439 7_1:+65071806 Msa1030820:CDS
GCAAATTAAAGCAGTGCTGT+TGG 0.486197 7_1:+65073400 Msa1030820:CDS
CATGAGAAAATTGTCTGGTA+AGG 0.488924 7_1:-65071278 None:intergenic
TTTGGGGCTTAGCAAGTCAC+CGG 0.489029 7_1:-65072739 None:intergenic
TACGGTTAGTACCTCTATAA+GGG 0.489290 7_1:-65073475 None:intergenic
TTTCAAACCCCATTTCAAAT+GGG 0.490689 7_1:-65071396 None:intergenic
CTATTGCAATGTCTTGTTCG+TGG 0.492928 7_1:-65071129 None:intergenic
ACAAAACATATGAATGTTGA+CGG 0.497241 7_1:-65073011 None:intergenic
TTGGATTCAGCGGGCTACCA+TGG 0.497757 7_1:+65073419 Msa1030820:CDS
TCAGAAGCGTCGTGGGGCGT+TGG 0.498023 7_1:+65071642 Msa1030820:CDS
CGCTTCTGAAACAGCGTCGT+GGG 0.499455 7_1:-65071628 None:intergenic
GTCGGTGGAGTGGGTGTCAA+CGG 0.499586 7_1:-65072684 None:intergenic
ATGAGGGCTTTGGATAACCT+TGG 0.500549 7_1:+65073064 Msa1030820:CDS
AGGAAACTCAGAAGCTGAAA+GGG 0.502922 7_1:-65071476 None:intergenic
GAAGAAGAAGGAAGTGGTGG+TGG 0.503536 7_1:+65071724 Msa1030820:CDS
GAGAAAGGTGGAGAAGAGCT+GGG 0.504559 7_1:+65071702 Msa1030820:CDS
TGTTGTTGTGGTTCAGTCCA+AGG 0.506094 7_1:-65071049 None:intergenic
ATGGACAGGGCTTCAATACT+CGG 0.509966 7_1:+65072546 Msa1030820:CDS
ATCTGTAGGGTGGAGGAGAT+AGG 0.510503 7_1:+65073590 Msa1030820:three_prime_UTR
ATAAAATGCTACCCTTATAG+AGG 0.513364 7_1:+65073464 Msa1030820:three_prime_UTR
GAAGCACTGAAAGGTGGTAC+TGG 0.513909 7_1:-65071523 None:intergenic
GGAGGAAGAAACTCAATGAT+AGG 0.514773 7_1:+65071908 Msa1030820:CDS
TAGTAAAGGTCTGTGTCTCC+AGG 0.517762 7_1:+65073544 Msa1030820:three_prime_UTR
AGCTGGGAAGAAGAAGGAAG+TGG 0.518800 7_1:+65071718 Msa1030820:CDS
TCTCTTCTTCTTGTTCCCCA+CGG 0.521728 7_1:-65071683 None:intergenic
TGGTGCATGAGAAAATTGTC+TGG 0.522663 7_1:-65071283 None:intergenic
ATTATGATTCTGATGAGAAT+GGG 0.525864 7_1:+65071782 Msa1030820:CDS
ATTTGATGGCTGAGAGGCGC+CGG 0.526012 7_1:+65071887 Msa1030820:CDS
CAGGGAAGAGTCGGTGGAGT+GGG 0.527264 7_1:-65072693 None:intergenic
GTCAAAGAGGATCTATATCC+CGG 0.532043 7_1:+65072720 Msa1030820:CDS
GAGGAAACTCAGAAGCTGAA+AGG 0.532923 7_1:-65071477 None:intergenic
TCAGAAGGGGAAGAAGAAGA+AGG 0.533310 7_1:+65071849 Msa1030820:CDS
TGAACTTGTTGAGGTGGTAA+GGG 0.534290 7_1:-65071010 None:intergenic
TTGTGTGTGAATAAAGGAAG+AGG 0.537578 7_1:-65070843 None:intergenic
ATAATACTCTCACTATACCT+TGG 0.539865 7_1:+65071032 Msa1030820:CDS
ACAGGTGGAAGTTAGAGTAA+GGG 0.540261 7_1:+65072979 Msa1030820:intron
AGCAGTGCTGTTGGATTCAG+CGG 0.541017 7_1:+65073409 Msa1030820:CDS
CAGAAGGGGAAGAAGAAGAA+GGG 0.544979 7_1:+65071850 Msa1030820:CDS
ATAGAATAGCTTAATCTGTA+GGG 0.546836 7_1:+65073577 Msa1030820:three_prime_UTR
GTGGAAGTTAGAGTAAGGGA+AGG 0.547671 7_1:+65072983 Msa1030820:CDS
TCTTAGCAGCAATGCAGAGA+AGG 0.548391 7_1:+65073359 Msa1030820:intron
GATTCCGAGGTTGGAGACCG+TGG 0.550901 7_1:+65071666 Msa1030820:CDS
CCAATAACCCATTTGAAATG+GGG 0.552722 7_1:+65071389 Msa1030820:CDS
AGATGCAGTTGACTACTTGA+AGG 0.553444 7_1:+65072569 Msa1030820:CDS
ACGCTGTTTCAGAAGCGTCG+TGG 0.560372 7_1:+65071634 Msa1030820:CDS
TGAAAGCTTGCACTTGCAGA+AGG 0.560535 7_1:-65072660 None:intergenic
CATTGCAATAGCTATTGCTA+TGG 0.561250 7_1:+65071141 Msa1030820:CDS
AAGGTTATCCAAAGCCCTCA+TGG 0.562752 7_1:-65073062 None:intergenic
TTTAGGTTCGGAGTTAGGTG+TGG 0.567779 7_1:-65071098 None:intergenic
TGATGATGATGATGTTGTTG+TGG 0.568352 7_1:-65071580 None:intergenic
ATTCCGAGGTTGGAGACCGT+GGG 0.568857 7_1:+65071667 Msa1030820:CDS
TGTTACTGGTGGAGATCAGA+AGG 0.571281 7_1:+65071834 Msa1030820:CDS
TGGAAGTTAGAGTAAGGGAA+GGG 0.572558 7_1:+65072984 Msa1030820:CDS
ACAGCAAGCTACAGCAGCTA+CGG 0.573063 7_1:-65073493 None:intergenic
GAGAGACACTACACAACACT+TGG 0.577753 7_1:+65070791 Msa1030820:five_prime_UTR
TGTGGTTGAGCTAGCTCAAG+AGG 0.578961 7_1:-65071556 None:intergenic
ATGAGAAAATTGTCTGGTAA+GGG 0.579342 7_1:-65071277 None:intergenic
GAACAAGAAGAAGAGAAAGG+TGG 0.581110 7_1:+65071690 Msa1030820:CDS
TGGGAAGAAGAAGGAAGTGG+TGG 0.581705 7_1:+65071721 Msa1030820:CDS
TTAGGTGTGGACCATGAAGA+AGG 0.581820 7_1:-65071085 None:intergenic
GTATTATGAACTTGTTGAGG+TGG 0.581897 7_1:-65071016 None:intergenic
AGACACAGACCTTTACTAGC+AGG 0.582495 7_1:-65073539 None:intergenic
TTGTTGTGAAAGAAAGAGTG+TGG 0.583509 7_1:-65071337 None:intergenic
TATTCTATCTGATCTTGGCC+TGG 0.585085 7_1:-65073562 None:intergenic
TAGCTTAATCTGTAGGGTGG+AGG 0.585513 7_1:+65073583 Msa1030820:three_prime_UTR
TCTTCCCTGTCGAGTCAAAG+AGG 0.586826 7_1:+65072707 Msa1030820:CDS
TGTGTGTGAATAAAGGAAGA+GGG 0.589789 7_1:-65070842 None:intergenic
GGGACCCACCCATGAAAACA+GGG 0.591270 7_1:-65071456 None:intergenic
AGAAGGGGAAGAAGAAGAAG+GGG 0.595564 7_1:+65071851 Msa1030820:CDS
AATGGGACTGTTGTTACTGG+TGG 0.595592 7_1:+65071823 Msa1030820:CDS
TTGACTCGACAGGGAAGAGT+CGG 0.596564 7_1:-65072702 None:intergenic
TGATGGCTGAGAGGCGCCGG+AGG 0.599553 7_1:+65071890 Msa1030820:CDS
AGAAGAGAAGGGAAGCAGCA+AGG 0.604888 7_1:+65070751 None:intergenic
ATTTGTGTGAAGAATGATGA+AGG 0.611302 7_1:-65070905 None:intergenic
ACTTGAAGGAGCTGCTGCAG+CGG 0.611585 7_1:+65072583 Msa1030820:CDS
ACTCGACAGGGAAGAGTCGG+TGG 0.612573 7_1:-65072699 None:intergenic
CAAAGAATTTGATGGCTGAG+AGG 0.613701 7_1:+65071881 Msa1030820:CDS
ACAGGGAAGAGTCGGTGGAG+TGG 0.614037 7_1:-65072694 None:intergenic
ATGGTAGATAGCAAAAGTCC+TGG 0.618329 7_1:-65073043 None:intergenic
ATAGAAAACGAAGCACTGAA+AGG 0.618637 7_1:-65071532 None:intergenic
GAACTGGAATCAACTCCACC+TGG 0.619030 7_1:+65072624 Msa1030820:CDS
GGGGAACAAGAAGAAGAGAA+AGG 0.621823 7_1:+65071687 Msa1030820:CDS
ACTTCATTCAATTCAAACCA+TGG 0.624434 7_1:-65073436 None:intergenic
GTTACTGGTGGAGATCAGAA+GGG 0.630933 7_1:+65071835 Msa1030820:CDS
ATTAGACGTGTTCAGAGCTG+AGG 0.631196 7_1:+65073132 Msa1030820:CDS
TGTTGTGCCTAAAATTAGCA+AGG 0.631769 7_1:+65071948 Msa1030820:CDS
GAATAGCTTAATCTGTAGGG+TGG 0.631855 7_1:+65073580 Msa1030820:three_prime_UTR
TTGGGGCTTAGCAAGTCACC+GGG 0.636110 7_1:-65072738 None:intergenic
GTGGGGCGTTGGAGATTCCG+AGG 0.636781 7_1:+65071653 Msa1030820:CDS
GAAAACGAAGCACTGAAAGG+TGG 0.640228 7_1:-65071529 None:intergenic
CCTGCTGAACATCCAATCCA+AGG 0.640256 7_1:-65073081 None:intergenic
ACGCTTCTGAAACAGCGTCG+TGG 0.647570 7_1:-65071629 None:intergenic
GCAGTGCTGTTGGATTCAGC+GGG 0.652187 7_1:+65073410 Msa1030820:CDS
AGATCCTCTTTGACTCGACA+GGG 0.653087 7_1:-65072711 None:intergenic
TTGTTGAATTTATGATTACG+TGG 0.661297 7_1:+65073658 Msa1030820:three_prime_UTR
GCACTGCTTTAATTTGCTCG+GGG 0.667619 7_1:-65073394 None:intergenic
TTACTGGTGGAGATCAGAAG+GGG 0.669179 7_1:+65071836 Msa1030820:CDS
GGTTGCAGCAGTGAGCCAGG+TGG 0.670958 7_1:-65072639 None:intergenic
GCTGTTTCAGAAGCGTCGTG+GGG 0.673826 7_1:+65071636 Msa1030820:CDS
TTGAATTTATGATTACGTGG+TGG 0.682795 7_1:+65073661 Msa1030820:three_prime_UTR
AGAGTATTATGAACTTGTTG+AGG 0.689686 7_1:-65071019 None:intergenic
TTCCGAGGTTGGAGACCGTG+GGG 0.692226 7_1:+65071668 Msa1030820:CDS
GGACCCACCCATGAAAACAG+GGG 0.693712 7_1:-65071455 None:intergenic
GCAGCATCGAGTTCAAGACT+CGG 0.694688 7_1:-65071499 None:intergenic
GCATCGAGTTCAAGACTCGG+AGG 0.717250 7_1:-65071496 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTACTATTTATTCAA+TGG - chr7_1:65072228-65072247 None:intergenic 10.0%
!!! AATTTCATTTATTTTATAGA+TGG + chr7_1:65072527-65072546 Msa1030820:intron 10.0%
!! AATGATTTGAATAATTCAAA+TGG + chr7_1:65071805-65071824 Msa1030820:CDS 15.0%
!! ATGATTTGAATAATTCAAAT+GGG + chr7_1:65071806-65071825 Msa1030820:CDS 15.0%
!! TTTACAAAATATTGTGAAAT+TGG + chr7_1:65071988-65072007 Msa1030820:intron 15.0%
!!! CATCAAATATTTTTTCTAAA+AGG - chr7_1:65072016-65072035 None:intergenic 15.0%
!!! AAAAATGTTATGTTTTTTGA+AGG - chr7_1:65072260-65072279 None:intergenic 15.0%
!!! TTTGAAAATGGATTCTTTAT+GGG + chr7_1:65071412-65071431 Msa1030820:CDS 20.0%
!!! TCCATTAATGTTTTAAATTG+CGG + chr7_1:65072052-65072071 Msa1030820:intron 20.0%
!! GATTTCTATTATTCAAATCA+AGG - chr7_1:65072288-65072307 None:intergenic 20.0%
!! TTGAATAATAGAAATCATGA+AGG + chr7_1:65072292-65072311 Msa1030820:intron 20.0%
!! TGAATAATAGAAATCATGAA+GGG + chr7_1:65072293-65072312 Msa1030820:intron 20.0%
!!! ACTAGTTTTTTGTATTTTGT+TGG + chr7_1:65072331-65072350 Msa1030820:intron 20.0%
!!! TTGCTTTTGTAATTTTGTTT+GGG + chr7_1:65072393-65072412 Msa1030820:intron 20.0%
!!! ATTTATTTTATAGATGGACA+GGG + chr7_1:65072533-65072552 Msa1030820:intron 20.0%
!! TAATAATCTTCATAATGAAC+TGG + chr7_1:65072608-65072627 Msa1030820:CDS 20.0%
! TTTATCTTGTGTGTGAATAA+AGG - chr7_1:65070852-65070871 None:intergenic 25.0%
!! TGGATTTGAAATTGAATCTA+TGG - chr7_1:65071320-65071339 None:intergenic 25.0%
!! GTTTGAAAATGGATTCTTTA+TGG + chr7_1:65071411-65071430 Msa1030820:CDS 25.0%
! AATTATGATTCTGATGAGAA+TGG + chr7_1:65071781-65071800 Msa1030820:CDS 25.0%
! ATTATGATTCTGATGAGAAT+GGG + chr7_1:65071782-65071801 Msa1030820:CDS 25.0%
!! ACCGCAATTTAAAACATTAA+TGG - chr7_1:65072056-65072075 None:intergenic 25.0%
! CAAAAAATTGTTGTCAAATG+CGG + chr7_1:65072106-65072125 Msa1030820:intron 25.0%
! TCAATGGCATTTCTAATTAT+AGG - chr7_1:65072212-65072231 None:intergenic 25.0%
! AAATTACAAAAGCAACAAGA+TGG - chr7_1:65072388-65072407 None:intergenic 25.0%
!!! GTTGCTTTTGTAATTTTGTT+TGG + chr7_1:65072392-65072411 Msa1030820:intron 25.0%
!!! TGCTTTTGTAATTTTGTTTG+GGG + chr7_1:65072394-65072413 Msa1030820:intron 25.0%
!! AATGTTGTTGCTTATGTTAA+TGG + chr7_1:65072432-65072451 Msa1030820:intron 25.0%
!!! CATTTATTTTATAGATGGAC+AGG + chr7_1:65072532-65072551 Msa1030820:intron 25.0%
!!! TTCTTGTTTCTGAAATTTAC+AGG + chr7_1:65072961-65072980 Msa1030820:intron 25.0%
! ACAAAACATATGAATGTTGA+CGG - chr7_1:65073014-65073033 None:intergenic 25.0%
! AATGTAAGAAAGGTTTATGA+TGG - chr7_1:65073199-65073218 None:intergenic 25.0%
! CATACAGTAAAATGTAAGAA+AGG - chr7_1:65073209-65073228 None:intergenic 25.0%
!!! ATTTCGAGTTCACTAATTAT+TGG + chr7_1:65073292-65073311 Msa1030820:intron 25.0%
! ATAGAATAGCTTAATCTGTA+GGG + chr7_1:65073577-65073596 Msa1030820:three_prime_UTR 25.0%
! TTGTTGAATTTATGATTACG+TGG + chr7_1:65073658-65073677 Msa1030820:three_prime_UTR 25.0%
AATGATGAAGGAGAGAAAAA+GGG - chr7_1:65070896-65070915 None:intergenic 30.0%
ATTTGTGTGAAGAATGATGA+AGG - chr7_1:65070908-65070927 None:intergenic 30.0%
! AAAAAGAGAAAAGTGTGAAG+AGG - chr7_1:65070960-65070979 None:intergenic 30.0%
!! AGAGTATTATGAACTTGTTG+AGG - chr7_1:65071022-65071041 None:intergenic 30.0%
ATAATACTCTCACTATACCT+TGG + chr7_1:65071032-65071051 Msa1030820:CDS 30.0%
! TAGAAGTTGTTGTTGTTATC+AGG - chr7_1:65071211-65071230 None:intergenic 30.0%
ATGAGAAAATTGTCTGGTAA+GGG - chr7_1:65071280-65071299 None:intergenic 30.0%
! AATCTATGGTGTTTGTGTTT+TGG - chr7_1:65071306-65071325 None:intergenic 30.0%
TACCAATAACCCATTTGAAA+TGG + chr7_1:65071387-65071406 Msa1030820:CDS 30.0%
! ACCAATAACCCATTTGAAAT+GGG + chr7_1:65071388-65071407 Msa1030820:CDS 30.0%
TTTCAAACCCCATTTCAAAT+GGG - chr7_1:65071399-65071418 None:intergenic 30.0%
! TTTTCAAACCCCATTTCAAA+TGG - chr7_1:65071400-65071419 None:intergenic 30.0%
! TTTGAAATGGGGTTTGAAAA+TGG + chr7_1:65071400-65071419 Msa1030820:CDS 30.0%
ATGATAGGTTGTATATGCTT+AGG + chr7_1:65071923-65071942 Msa1030820:CDS 30.0%
! CCATATACCTTGCTAATTTT+AGG - chr7_1:65071958-65071977 None:intergenic 30.0%
CCTAAAATTAGCAAGGTATA+TGG + chr7_1:65071955-65071974 Msa1030820:intron 30.0%
AAATAGAACGTGCTAATGTT+AGG + chr7_1:65072494-65072513 Msa1030820:intron 30.0%
AGGCAAACAAAAATTACCTT+GGG - chr7_1:65072774-65072793 None:intergenic 30.0%
AAGGCAAACAAAAATTACCT+TGG - chr7_1:65072775-65072794 None:intergenic 30.0%
TCTTAAATCACTTCGCATTA+AGG - chr7_1:65072794-65072813 None:intergenic 30.0%
! GTTTGTGACAATAATTTGCA+TGG - chr7_1:65072849-65072868 None:intergenic 30.0%
CATGTTACTGGTATAGATAA+AGG - chr7_1:65072873-65072892 None:intergenic 30.0%
CTTTATCTATACCAGTAACA+TGG + chr7_1:65072871-65072890 Msa1030820:intron 30.0%
ACATGGCAAATAACTGAATA+AGG + chr7_1:65072888-65072907 Msa1030820:intron 30.0%
CATGGCAAATAACTGAATAA+GGG + chr7_1:65072889-65072908 Msa1030820:intron 30.0%
GTACGTTGATGCAAATTATT+TGG + chr7_1:65072911-65072930 Msa1030820:intron 30.0%
GTTGATGCAAATTATTTGGA+CGG + chr7_1:65072915-65072934 Msa1030820:intron 30.0%
AATTATTTGGACGGTAATTG+AGG + chr7_1:65072924-65072943 Msa1030820:intron 30.0%
!! TTGTTTCTGAAATTTACAGG+TGG + chr7_1:65072964-65072983 Msa1030820:intron 30.0%
! GATGTTTATATGCCTCTTTT+AGG + chr7_1:65073238-65073257 Msa1030820:intron 30.0%
CACAAAAAACAACCTAAAAG+AGG - chr7_1:65073253-65073272 None:intergenic 30.0%
! ATTTCTACCATTTGAAGTTC+TGG + chr7_1:65073315-65073334 Msa1030820:intron 30.0%
ACTTCATTCAATTCAAACCA+TGG - chr7_1:65073439-65073458 None:intergenic 30.0%
! TATAAGGGTAGCATTTTATC+AGG - chr7_1:65073463-65073482 None:intergenic 30.0%
ATAAAATGCTACCCTTATAG+AGG + chr7_1:65073464-65073483 Msa1030820:three_prime_UTR 30.0%
TAAGCTATTCTATCTGATCT+TGG - chr7_1:65073570-65073589 None:intergenic 30.0%
GATAGAATAGCTTAATCTGT+AGG + chr7_1:65073576-65073595 Msa1030820:three_prime_UTR 30.0%
TTGAATTTATGATTACGTGG+TGG + chr7_1:65073661-65073680 Msa1030820:three_prime_UTR 30.0%
TGTGTGTGAATAAAGGAAGA+GGG - chr7_1:65070845-65070864 None:intergenic 35.0%
TTGTGTGTGAATAAAGGAAG+AGG - chr7_1:65070846-65070865 None:intergenic 35.0%
GAATGATGAAGGAGAGAAAA+AGG - chr7_1:65070897-65070916 None:intergenic 35.0%
!!! TCTTTTTTGTCTCTCTGTCA+TGG + chr7_1:65070973-65070992 Msa1030820:exon 35.0%
!! GTATTATGAACTTGTTGAGG+TGG - chr7_1:65071019-65071038 None:intergenic 35.0%
!! GATTCTTGTTGTTGTTGTTG+TGG - chr7_1:65071064-65071083 None:intergenic 35.0%
AACAAGAATCACCTTCTTCA+TGG + chr7_1:65071074-65071093 Msa1030820:CDS 35.0%
CATTGCAATAGCTATTGCTA+TGG + chr7_1:65071141-65071160 Msa1030820:CDS 35.0%
! TTGTTGTTGTTATCAGGTTC+GGG - chr7_1:65071205-65071224 None:intergenic 35.0%
! GTTGTTGTTGTTATCAGGTT+CGG - chr7_1:65071206-65071225 None:intergenic 35.0%
CATGAGAAAATTGTCTGGTA+AGG - chr7_1:65071281-65071300 None:intergenic 35.0%
TTGTTGTGAAAGAAAGAGTG+TGG - chr7_1:65071340-65071359 None:intergenic 35.0%
! CCAATAACCCATTTGAAATG+GGG + chr7_1:65071389-65071408 Msa1030820:CDS 35.0%
! TTCAAATTCCCCTGTTTTCA+TGG + chr7_1:65071447-65071466 Msa1030820:CDS 35.0%
! TCAAATTCCCCTGTTTTCAT+GGG + chr7_1:65071448-65071467 Msa1030820:CDS 35.0%
!! ATAGAAAACGAAGCACTGAA+AGG - chr7_1:65071535-65071554 None:intergenic 35.0%
! TGATGATGATGATGTTGTTG+TGG - chr7_1:65071583-65071602 None:intergenic 35.0%
TATCATTGAGTTTCTTCCTC+CGG - chr7_1:65071909-65071928 None:intergenic 35.0%
TGTTGTGCCTAAAATTAGCA+AGG + chr7_1:65071948-65071967 Msa1030820:CDS 35.0%
! TTTTTATGTGACCGCGATTA+AGG - chr7_1:65072141-65072160 None:intergenic 35.0%
CAAAAATTACCTTGGGAGAT+TGG - chr7_1:65072767-65072786 None:intergenic 35.0%
TCAGTTATTTGCCATGTTAC+TGG - chr7_1:65072885-65072904 None:intergenic 35.0%
!! ACTTTTGCTATCTACCATGA+GGG + chr7_1:65073048-65073067 Msa1030820:CDS 35.0%
! GCTGTTATCAGTTGTTTCAA+TGG + chr7_1:65073103-65073122 Msa1030820:CDS 35.0%
! TGAGGTATTAGTTCTTTCTC+CGG + chr7_1:65073150-65073169 Msa1030820:intron 35.0%
ATCAACACCAGAACTTCAAA+TGG - chr7_1:65073325-65073344 None:intergenic 35.0%
TACGGTTAGTACCTCTATAA+GGG - chr7_1:65073478-65073497 None:intergenic 35.0%
ATAAAGGAAGAGGGAATGAC+TGG - chr7_1:65070836-65070855 None:intergenic 40.0%
!! TGAACTTGTTGAGGTGGTAA+GGG - chr7_1:65071013-65071032 None:intergenic 40.0%
!! ATGAACTTGTTGAGGTGGTA+AGG - chr7_1:65071014-65071033 None:intergenic 40.0%
! TTGTGTTTAGGTTCGGAGTT+AGG - chr7_1:65071106-65071125 None:intergenic 40.0%
! GTGGTTGTTGTGTTTAGGTT+CGG - chr7_1:65071113-65071132 None:intergenic 40.0%
TGTTCGTGGTTGTTGTGTTT+AGG - chr7_1:65071118-65071137 None:intergenic 40.0%
! CTATTGCAATGTCTTGTTCG+TGG - chr7_1:65071132-65071151 None:intergenic 40.0%
TGGTGCATGAGAAAATTGTC+TGG - chr7_1:65071286-65071305 None:intergenic 40.0%
!! CCCCATTTCAAATGGGTTAT+TGG - chr7_1:65071392-65071411 None:intergenic 40.0%
AGGAAACTCAGAAGCTGAAA+GGG - chr7_1:65071479-65071498 None:intergenic 40.0%
! TGATGATGTTGTTGTGGTTG+TGG - chr7_1:65071577-65071596 None:intergenic 40.0%
GAACAAGAAGAAGAGAAAGG+TGG + chr7_1:65071690-65071709 Msa1030820:CDS 40.0%
TCAAATGGGACTGTTGTTAC+TGG + chr7_1:65071820-65071839 Msa1030820:CDS 40.0%
GCTTCCTGCAAAGAATTTGA+TGG + chr7_1:65071873-65071892 Msa1030820:CDS 40.0%
TCAGCCATCAAATTCTTTGC+AGG - chr7_1:65071880-65071899 None:intergenic 40.0%
! CAAAGAATTTGATGGCTGAG+AGG + chr7_1:65071881-65071900 Msa1030820:CDS 40.0%
GGAGGAAGAAACTCAATGAT+AGG + chr7_1:65071908-65071927 Msa1030820:CDS 40.0%
TTAAATTGCGGTCGCAGTAA+TGG + chr7_1:65072064-65072083 Msa1030820:intron 40.0%
TGTTTGGGGAATCTAGTGTT+TGG + chr7_1:65072408-65072427 Msa1030820:intron 40.0%
GTTTGGGGAATCTAGTGTTT+GGG + chr7_1:65072409-65072428 Msa1030820:intron 40.0%
ACACAAAGCAAATGCAACAC+TGG - chr7_1:65072458-65072477 None:intergenic 40.0%
AGATGCAGTTGACTACTTGA+AGG + chr7_1:65072569-65072588 Msa1030820:CDS 40.0%
GTCAAAGAGGATCTATATCC+CGG + chr7_1:65072720-65072739 Msa1030820:CDS 40.0%
!!! ACCTTGGGAGATTGGTTTTT+GGG - chr7_1:65072759-65072778 None:intergenic 40.0%
!!! TACCTTGGGAGATTGGTTTT+TGG - chr7_1:65072760-65072779 None:intergenic 40.0%
TACAGGTGGAAGTTAGAGTA+AGG + chr7_1:65072978-65072997 Msa1030820:intron 40.0%
ACAGGTGGAAGTTAGAGTAA+GGG + chr7_1:65072979-65072998 Msa1030820:intron 40.0%
TGGAAGTTAGAGTAAGGGAA+GGG + chr7_1:65072984-65073003 Msa1030820:CDS 40.0%
ATGGTAGATAGCAAAAGTCC+TGG - chr7_1:65073046-65073065 None:intergenic 40.0%
!! GACTTTTGCTATCTACCATG+AGG + chr7_1:65073047-65073066 Msa1030820:CDS 40.0%
!! AGCACTGCTTTAATTTGCTC+GGG - chr7_1:65073398-65073417 None:intergenic 40.0%
!! CAGCACTGCTTTAATTTGCT+CGG - chr7_1:65073399-65073418 None:intergenic 40.0%
GCAAATTAAAGCAGTGCTGT+TGG + chr7_1:65073400-65073419 Msa1030820:CDS 40.0%
CTACGGTTAGTACCTCTATA+AGG - chr7_1:65073479-65073498 None:intergenic 40.0%
CTTCTTGTTCCTGCTAGTAA+AGG + chr7_1:65073530-65073549 Msa1030820:three_prime_UTR 40.0%
TATTCTATCTGATCTTGGCC+TGG - chr7_1:65073565-65073584 None:intergenic 40.0%
GAATAGCTTAATCTGTAGGG+TGG + chr7_1:65073580-65073599 Msa1030820:three_prime_UTR 40.0%
GAGAGACACTACACAACACT+TGG + chr7_1:65070791-65070810 Msa1030820:five_prime_UTR 45.0%
! AATGACTGGTTGAGTGAGTG+AGG - chr7_1:65070822-65070841 None:intergenic 45.0%
TGTTGTTGTGGTTCAGTCCA+AGG - chr7_1:65071052-65071071 None:intergenic 45.0%
TTAGGTGTGGACCATGAAGA+AGG - chr7_1:65071088-65071107 None:intergenic 45.0%
! TTTAGGTTCGGAGTTAGGTG+TGG - chr7_1:65071101-65071120 None:intergenic 45.0%
GCAATAGCTATTGCTATGGC+TGG + chr7_1:65071145-65071164 Msa1030820:CDS 45.0%
! GTGGTTCGGGTTTGAAGAAA+GGG - chr7_1:65071180-65071199 None:intergenic 45.0%
! TGTGGTTCGGGTTTGAAGAA+AGG - chr7_1:65071181-65071200 None:intergenic 45.0%
!! TTGTTATCAGGTTCGGGTTG+TGG - chr7_1:65071199-65071218 None:intergenic 45.0%
! AATTCCCCTGTTTTCATGGG+TGG + chr7_1:65071451-65071470 Msa1030820:CDS 45.0%
! ATTCCCCTGTTTTCATGGGT+GGG + chr7_1:65071452-65071471 Msa1030820:CDS 45.0%
GAGGAAACTCAGAAGCTGAA+AGG - chr7_1:65071480-65071499 None:intergenic 45.0%
!! GAAAACGAAGCACTGAAAGG+TGG - chr7_1:65071532-65071551 None:intergenic 45.0%
TCTCTTCTTCTTGTTCCCCA+CGG - chr7_1:65071686-65071705 None:intergenic 45.0%
GGGGAACAAGAAGAAGAGAA+AGG + chr7_1:65071687-65071706 Msa1030820:CDS 45.0%
AATGGGACTGTTGTTACTGG+TGG + chr7_1:65071823-65071842 Msa1030820:CDS 45.0%
TGTTACTGGTGGAGATCAGA+AGG + chr7_1:65071834-65071853 Msa1030820:CDS 45.0%
GTTACTGGTGGAGATCAGAA+GGG + chr7_1:65071835-65071854 Msa1030820:CDS 45.0%
TTACTGGTGGAGATCAGAAG+GGG + chr7_1:65071836-65071855 Msa1030820:CDS 45.0%
TCAGAAGGGGAAGAAGAAGA+AGG + chr7_1:65071849-65071868 Msa1030820:CDS 45.0%
CAGAAGGGGAAGAAGAAGAA+GGG + chr7_1:65071850-65071869 Msa1030820:CDS 45.0%
AGAAGGGGAAGAAGAAGAAG+GGG + chr7_1:65071851-65071870 Msa1030820:CDS 45.0%
! GGTTGATGTAGCCTTAATCG+CGG + chr7_1:65072127-65072146 Msa1030820:intron 45.0%
GGCATCACACAAGCATTTCA+AGG - chr7_1:65072367-65072386 None:intergenic 45.0%
ATGGACAGGGCTTCAATACT+CGG + chr7_1:65072546-65072565 Msa1030820:CDS 45.0%
TGAAAGCTTGCACTTGCAGA+AGG - chr7_1:65072663-65072682 None:intergenic 45.0%
! AGATCCTCTTTGACTCGACA+GGG - chr7_1:65072714-65072733 None:intergenic 45.0%
! TAGATCCTCTTTGACTCGAC+AGG - chr7_1:65072715-65072734 None:intergenic 45.0%
!!! CCTTGGGAGATTGGTTTTTG+GGG - chr7_1:65072758-65072777 None:intergenic 45.0%
GTGGAAGTTAGAGTAAGGGA+AGG + chr7_1:65072983-65073002 Msa1030820:CDS 45.0%
! ATGTTTTGTACTCGCAGACC+AGG + chr7_1:65073025-65073044 Msa1030820:CDS 45.0%
AAGGTTATCCAAAGCCCTCA+TGG - chr7_1:65073065-65073084 None:intergenic 45.0%
!! ATGAGGGCTTTGGATAACCT+TGG + chr7_1:65073064-65073083 Msa1030820:CDS 45.0%
!! GGCTTTGGATAACCTTGGAT+TGG + chr7_1:65073069-65073088 Msa1030820:CDS 45.0%
ATTAGACGTGTTCAGAGCTG+AGG + chr7_1:65073132-65073151 Msa1030820:CDS 45.0%
GTTTGAGTGAAGCTTGCAAC+CGG - chr7_1:65073172-65073191 None:intergenic 45.0%
TCTTAGCAGCAATGCAGAGA+AGG + chr7_1:65073359-65073378 Msa1030820:intron 45.0%
!! GCACTGCTTTAATTTGCTCG+GGG - chr7_1:65073397-65073416 None:intergenic 45.0%
AGACACAGACCTTTACTAGC+AGG - chr7_1:65073542-65073561 None:intergenic 45.0%
TAGTAAAGGTCTGTGTCTCC+AGG + chr7_1:65073544-65073563 Msa1030820:three_prime_UTR 45.0%
TAGCTTAATCTGTAGGGTGG+AGG + chr7_1:65073583-65073602 Msa1030820:three_prime_UTR 45.0%
!! ATCAGGTTCGGGTTGTGGTT+CGG - chr7_1:65071194-65071213 None:intergenic 50.0%
! GCAGCATCGAGTTCAAGACT+CGG - chr7_1:65071502-65071521 None:intergenic 50.0%
!! GAAGCACTGAAAGGTGGTAC+TGG - chr7_1:65071526-65071545 None:intergenic 50.0%
TGTGGTTGAGCTAGCTCAAG+AGG - chr7_1:65071559-65071578 None:intergenic 50.0%
AGAGAAAGGTGGAGAAGAGC+TGG + chr7_1:65071701-65071720 Msa1030820:CDS 50.0%
GAGAAAGGTGGAGAAGAGCT+GGG + chr7_1:65071702-65071721 Msa1030820:CDS 50.0%
GAGAAGAGCTGGGAAGAAGA+AGG + chr7_1:65071712-65071731 Msa1030820:CDS 50.0%
AGCTGGGAAGAAGAAGGAAG+TGG + chr7_1:65071718-65071737 Msa1030820:CDS 50.0%
TGGGAAGAAGAAGGAAGTGG+TGG + chr7_1:65071721-65071740 Msa1030820:CDS 50.0%
GAAGAAGAAGGAAGTGGTGG+TGG + chr7_1:65071724-65071743 Msa1030820:CDS 50.0%
GAACTGGAATCAACTCCACC+TGG + chr7_1:65072624-65072643 Msa1030820:CDS 50.0%
! TTGACTCGACAGGGAAGAGT+CGG - chr7_1:65072705-65072724 None:intergenic 50.0%
TCTTCCCTGTCGAGTCAAAG+AGG + chr7_1:65072707-65072726 Msa1030820:CDS 50.0%
! TTTGGGGCTTAGCAAGTCAC+CGG - chr7_1:65072742-65072761 None:intergenic 50.0%
CCCCAAAAACCAATCTCCCA+AGG + chr7_1:65072755-65072774 Msa1030820:CDS 50.0%
GCTATCTACCATGAGGGCTT+TGG + chr7_1:65073054-65073073 Msa1030820:CDS 50.0%
CCTGCTGAACATCCAATCCA+AGG - chr7_1:65073084-65073103 None:intergenic 50.0%
! CCTTGGATTGGATGTTCAGC+AGG + chr7_1:65073081-65073100 Msa1030820:CDS 50.0%
! AGCAGTGCTGTTGGATTCAG+CGG + chr7_1:65073409-65073428 Msa1030820:CDS 50.0%
ACAGCAAGCTACAGCAGCTA+CGG - chr7_1:65073496-65073515 None:intergenic 50.0%
ATCTGTAGGGTGGAGGAGAT+AGG + chr7_1:65073590-65073609 Msa1030820:three_prime_UTR 50.0%
!! TCAGGTTCGGGTTGTGGTTC+GGG - chr7_1:65071193-65071212 None:intergenic 55.0%
GGACCCACCCATGAAAACAG+GGG - chr7_1:65071458-65071477 None:intergenic 55.0%
GGGACCCACCCATGAAAACA+GGG - chr7_1:65071459-65071478 None:intergenic 55.0%
AGGGACCCACCCATGAAAAC+AGG - chr7_1:65071460-65071479 None:intergenic 55.0%
GCATCGAGTTCAAGACTCGG+AGG - chr7_1:65071499-65071518 None:intergenic 55.0%
!! CGCTTCTGAAACAGCGTCGT+GGG - chr7_1:65071631-65071650 None:intergenic 55.0%
!! ACGCTTCTGAAACAGCGTCG+TGG - chr7_1:65071632-65071651 None:intergenic 55.0%
!! ACGCTGTTTCAGAAGCGTCG+TGG + chr7_1:65071634-65071653 Msa1030820:CDS 55.0%
!! CGCTGTTTCAGAAGCGTCGT+GGG + chr7_1:65071635-65071654 Msa1030820:CDS 55.0%
!! GCTGTTTCAGAAGCGTCGTG+GGG + chr7_1:65071636-65071655 Msa1030820:CDS 55.0%
ATTCCGAGGTTGGAGACCGT+GGG + chr7_1:65071667-65071686 Msa1030820:CDS 55.0%
!! GAAGAAGGAAGTGGTGGTGG+TGG + chr7_1:65071727-65071746 Msa1030820:CDS 55.0%
! ATTTGATGGCTGAGAGGCGC+CGG + chr7_1:65071887-65071906 Msa1030820:CDS 55.0%
ACTTGAAGGAGCTGCTGCAG+CGG + chr7_1:65072583-65072602 Msa1030820:CDS 55.0%
TTGGGGCTTAGCAAGTCACC+GGG - chr7_1:65072741-65072760 None:intergenic 55.0%
! TTTGCTCGGGGAGTACATCC+TGG - chr7_1:65073385-65073404 None:intergenic 55.0%
! GCAGTGCTGTTGGATTCAGC+GGG + chr7_1:65073410-65073429 Msa1030820:CDS 55.0%
!! TTGGATTCAGCGGGCTACCA+TGG + chr7_1:65073419-65073438 Msa1030820:CDS 55.0%
! GGCGTTGGAGATTCCGAGGT+TGG + chr7_1:65071657-65071676 Msa1030820:CDS 60.0%
GATTCCGAGGTTGGAGACCG+TGG + chr7_1:65071666-65071685 Msa1030820:CDS 60.0%
TTCCGAGGTTGGAGACCGTG+GGG + chr7_1:65071668-65071687 Msa1030820:CDS 60.0%
TTCCCCACGGTCTCCAACCT+CGG - chr7_1:65071673-65071692 None:intergenic 60.0%
!! GAAGGAAGTGGTGGTGGTGG+TGG + chr7_1:65071730-65071749 Msa1030820:CDS 60.0%
GAAGGTTGCAGCAGTGAGCC+AGG - chr7_1:65072645-65072664 None:intergenic 60.0%
TCGGTGGAGTGGGTGTCAAC+GGG - chr7_1:65072686-65072705 None:intergenic 60.0%
GTCGGTGGAGTGGGTGTCAA+CGG - chr7_1:65072687-65072706 None:intergenic 60.0%
CAGGGAAGAGTCGGTGGAGT+GGG - chr7_1:65072696-65072715 None:intergenic 60.0%
ACAGGGAAGAGTCGGTGGAG+TGG - chr7_1:65072697-65072716 None:intergenic 60.0%
ACTCGACAGGGAAGAGTCGG+TGG - chr7_1:65072702-65072721 None:intergenic 60.0%
GCAGCAATGCAGAGAAGGCC+AGG + chr7_1:65073364-65073383 Msa1030820:intron 60.0%
!! TCAGAAGCGTCGTGGGGCGT+TGG + chr7_1:65071642-65071661 Msa1030820:CDS 65.0%
!! GTGGGGCGTTGGAGATTCCG+AGG + chr7_1:65071653-65071672 Msa1030820:CDS 65.0%
GGTTGCAGCAGTGAGCCAGG+TGG - chr7_1:65072642-65072661 None:intergenic 65.0%
!! TGATGGCTGAGAGGCGCCGG+AGG + chr7_1:65071890-65071909 Msa1030820:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 65070760 65073715 65070760 ID=Msa1030820;Name=Msa1030820
chr7_1 mRNA 65070760 65073715 65070760 ID=Msa1030820-mRNA-1;Parent=Msa1030820;Name=Msa1030820-mRNA-1;_AED=0.14;_eAED=0.14;_QI=209|1|1|1|0.75|0.6|5|264|487
chr7_1 exon 65070760 65070813 65070760 ID=Msa1030820-mRNA-1:exon:14348;Parent=Msa1030820-mRNA-1
chr7_1 exon 65070837 65071969 65070837 ID=Msa1030820-mRNA-1:exon:14349;Parent=Msa1030820-mRNA-1
chr7_1 exon 65072546 65072776 65072546 ID=Msa1030820-mRNA-1:exon:14350;Parent=Msa1030820-mRNA-1
chr7_1 exon 65072983 65073153 65072983 ID=Msa1030820-mRNA-1:exon:14351;Parent=Msa1030820-mRNA-1
chr7_1 exon 65073368 65073715 65073368 ID=Msa1030820-mRNA-1:exon:14352;Parent=Msa1030820-mRNA-1
chr7_1 five_prime_UTR 65070760 65070813 65070760 ID=Msa1030820-mRNA-1:five_prime_utr;Parent=Msa1030820-mRNA-1
chr7_1 five_prime_UTR 65070837 65070991 65070837 ID=Msa1030820-mRNA-1:five_prime_utr;Parent=Msa1030820-mRNA-1
chr7_1 CDS 65070992 65071969 65070992 ID=Msa1030820-mRNA-1:cds;Parent=Msa1030820-mRNA-1
chr7_1 CDS 65072546 65072776 65072546 ID=Msa1030820-mRNA-1:cds;Parent=Msa1030820-mRNA-1
chr7_1 CDS 65072983 65073153 65072983 ID=Msa1030820-mRNA-1:cds;Parent=Msa1030820-mRNA-1
chr7_1 CDS 65073368 65073451 65073368 ID=Msa1030820-mRNA-1:cds;Parent=Msa1030820-mRNA-1
chr7_1 three_prime_UTR 65073452 65073715 65073452 ID=Msa1030820-mRNA-1:three_prime_utr;Parent=Msa1030820-mRNA-1
Gene Sequence

>Msa1030820

ATGGAGAGATACACGTTACCCTTACCACCTCAACAAGTTCATAATACTCTCACTATACCTTGGACTGAACCACAACAACAACAACAAGAATCACCTTCTTCATGGTCCACACCTAACTCCGAACCTAAACACAACAACCACGAACAAGACATTGCAATAGCTATTGCTATGGCTGGTTCTTCTATCCCTTTCTTCAAACCCGAACCACAACCCGAACCTGATAACAACAACAACTTCTACAACAACAACAACAACAACAACGTTGTTAATGTTAATAATGTTATTCCCTTACCAGACAATTTTCTCATGCACCAAAACACAAACACCATAGATTCAATTTCAAATCCACACTCTTTCTTTCACAACAATAACAACTACTTCTTCAACAACAATAATACCAATAACCCATTTGAAATGGGGTTTGAAAATGGATTCTTTATGGGAAACAACAACACTTCAAATTCCCCTGTTTTCATGGGTGGGTCCCTTTCAGCTTCTGAGTTTCCTCCGAGTCTTGAACTCGATGCTGCTCCAGTACCACCTTTCAGTGCTTCGTTTTCTATGCCTCTTGAGCTAGCTCAACCACAACCACAACAACATCATCATCATCATCAGCAACAACAACAACAACAACAACCCACGACGCTGTTTCAGAAGCGTCGTGGGGCGTTGGAGATTCCGAGGTTGGAGACCGTGGGGAACAAGAAGAAGAGAAAGGTGGAGAAGAGCTGGGAAGAAGAAGGAAGTGGTGGTGGTGGTGGTGATGATGTTGATGATTTTTCTGAGTTGAATTATGATTCTGATGAGAATGGGAATGATTTGAATAATTCAAATGGGACTGTTGTTACTGGTGGAGATCAGAAGGGGAAGAAGAAGAAGGGGCTTCCTGCAAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGGTTGTATATGCTTAGGTCTGTTGTGCCTAAAATTAGCAAGATGGACAGGGCTTCAATACTCGGAGATGCAGTTGACTACTTGAAGGAGCTGCTGCAGCGGATTAATAATCTTCATAATGAACTGGAATCAACTCCACCTGGCTCACTGCTGCAACCTTCTGCAAGTGCAAGCTTTCACCCGTTGACACCCACTCCACCGACTCTTCCCTGTCGAGTCAAAGAGGATCTATATCCCGGTGACTTGCTAAGCCCCAAAAACCAATCTCCCAAGGTGGAAGTTAGAGTAAGGGAAGGGAGAGCCGTCAACATTCATATGTTTTGTACTCGCAGACCAGGACTTTTGCTATCTACCATGAGGGCTTTGGATAACCTTGGATTGGATGTTCAGCAGGCTGTTATCAGTTGTTTCAATGGCTTTGCATTAGACGTGTTCAGAGCTGAGCAATGCAGAGAAGGCCAGGATGTACTCCCCGAGCAAATTAAAGCAGTGCTGTTGGATTCAGCGGGCTACCATGGTTTGAATTGA
Protein sequence

>Msa1030820

MERYTLPLPPQQVHNTLTIPWTEPQQQQQESPSSWSTPNSEPKHNNHEQDIAIAIAMAGSSIPFFKPEPQPEPDNNNNFYNNNNNNNVVNVNNVIPLPDNFLMHQNTNTIDSISNPHSFFHNNNNYFFNNNNTNNPFEMGFENGFFMGNNNTSNSPVFMGGSLSASEFPPSLELDAAPVPPFSASFSMPLELAQPQPQQHHHHHQQQQQQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKSWEEEGSGGGGGDDVDDFSELNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNLHNELESTPPGSLLQPSASASFHPLTPTPPTLPCRVKEDLYPGDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGYHGLN*