AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0202630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0202630 MtrunA17_Chr2g0299721 88.136 531 16 2 1 484 1 531 0.0 954
Msa0202630 MtrunA17_Chr7g0256421 35.840 399 194 10 119 465 94 482 2.67e-69 229
Msa0202630 MtrunA17_Chr2g0321641 35.766 411 200 10 110 465 81 482 3.12e-66 221
Msa0202630 MtrunA17_Chr2g0321661 34.314 408 204 11 110 466 77 471 4.98e-62 210
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0202630 AT5G57030.1 65.913 531 127 4 1 484 1 524 0.0 695
Msa0202630 AT3G10230.1 33.408 446 232 9 72 465 50 482 4.70e-69 229
Msa0202630 AT3G10230.2 32.402 358 184 7 158 465 1 350 1.30e-51 179

Find 116 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGACATTCTTAAGTTATT+TGG 0.177728 2_1:+25136064 None:intergenic
ATTTCAATTGGACGTTCTTA+TGG 0.245863 2_1:-25139262 Msa0202630:CDS
GCAAGGGACATTATTACTTA+TGG 0.259775 2_1:-25137208 Msa0202630:CDS
GGAACCTTAATAGAGTTTAT+AGG 0.296541 2_1:-25135911 Msa0202630:three_prime_UTR
TCTTGTTAGGTACCCTGTAT+TGG 0.297570 2_1:-25135955 Msa0202630:three_prime_UTR
TAAGGAGAAAGAAGATTTGT+TGG 0.300230 2_1:-25142035 Msa0202630:CDS
GTACTAGATCTAGTCGTTAT+TGG 0.302963 2_1:-25139852 Msa0202630:CDS
GGATTAAAAGTTGGACTTAT+TGG 0.306867 2_1:-25139783 Msa0202630:CDS
CTTGTTAGGTACCCTGTATT+GGG 0.312888 2_1:-25135954 Msa0202630:three_prime_UTR
GTTGCATCAGGAGCAGCTTC+AGG 0.332490 2_1:-25138823 Msa0202630:CDS
GCAATCTAAGCTTGCGGATA+AGG 0.335468 2_1:-25141824 Msa0202630:intron
ATAACCTATAAACTCTATTA+AGG 0.336233 2_1:+25135907 None:intergenic
GTGTGTGTGCAAACAGCTTA+TGG 0.354505 2_1:-25138766 Msa0202630:CDS
CTTGCTCTAGCTGCTGAATC+TGG 0.361407 2_1:-25139813 Msa0202630:CDS
GTGTGGGAGGACGAATTTAA+AGG 0.371750 2_1:-25139729 Msa0202630:intron
CAGTTGCCACCTATCTCTAT+TGG 0.372211 2_1:-25139882 Msa0202630:CDS
AGGTTCTTCTGTTCTGTGTT+TGG 0.372287 2_1:+25137428 None:intergenic
GCTGCTGAATCTGGCAAGTT+AGG 0.372390 2_1:-25139804 Msa0202630:CDS
AGGATGTGGCAAGGATTTCT+TGG 0.374365 2_1:-25136145 Msa0202630:CDS
ATTTGATTACCTCGCATTGA+TGG 0.374576 2_1:+25137169 None:intergenic
AACTATTGCAGTATGAGGTT+GGG 0.384949 2_1:-25138798 Msa0202630:CDS
TAAGTCCTTCTTTGAGGTTA+AGG 0.389115 2_1:-25142053 Msa0202630:CDS
GCTGTTTGCACACACACCTT+TGG 0.395248 2_1:+25138772 None:intergenic
AAGCTTCATCGAACGCGATT+CGG 0.396752 2_1:-25142002 Msa0202630:CDS
TTTGCATAAGTCCTTCTTTG+AGG 0.398446 2_1:-25142059 Msa0202630:CDS
CTCCCTTTCACAAACAACTA+TGG 0.400540 2_1:-25139753 Msa0202630:CDS
TCTAGCCTGTCTCCCAATAC+AGG 0.402133 2_1:+25135942 None:intergenic
GAGACAGGCTAGATTACATT+AGG 0.406678 2_1:-25135932 Msa0202630:three_prime_UTR
TTTGGTAAGGATCCACCAAC+TGG 0.407219 2_1:+25137446 None:intergenic
CTCTGTTGTGAGATCGTTGT+CGG 0.407519 2_1:-25137281 Msa0202630:CDS
AAGGTTGTATTGAGCATGTT+TGG 0.411470 2_1:-25139321 Msa0202630:CDS
ATTTCAGGTCTTGGACTTGA+AGG 0.411475 2_1:-25139340 Msa0202630:intron
CTTCTGTTCTGTGTTTGGTA+AGG 0.411856 2_1:+25137433 None:intergenic
AGGCTTGTTACTGTTGCATC+AGG 0.414531 2_1:-25138835 Msa0202630:CDS
TTTCAGCTTGGAATAAACTT+TGG 0.415293 2_1:-25136919 Msa0202630:intron
GAGTCAGGTGTCTCGTATCT+TGG 0.416251 2_1:-25139079 Msa0202630:CDS
TTCCCTAGGTGTGTCGAGTC+AGG 0.420699 2_1:-25139094 Msa0202630:intron
TCCATGAAAACCATCACGTT+TGG 0.421212 2_1:+25138343 None:intergenic
ACCATCACGTTTGGATCATA+AGG 0.427701 2_1:+25138352 None:intergenic
GATCTAGTCGTTATTGGTTG+TGG 0.430410 2_1:-25139846 Msa0202630:CDS
AAACTATTGCAGTATGAGGT+TGG 0.434728 2_1:-25138799 Msa0202630:CDS
TAAGAACGTCCAATTGAAAT+CGG 0.444751 2_1:+25139265 None:intergenic
CTCTGTCGTTTCCTTTCTTG+TGG 0.445396 2_1:+25136896 None:intergenic
GAACAGAAGAACCTTGCATT+TGG 0.452985 2_1:-25137419 Msa0202630:intron
ACTCCATCTCCAATAGAGAT+AGG 0.454988 2_1:+25139873 None:intergenic
ATTAGCACTAATTGTTCAGC+TGG 0.466025 2_1:-25136855 Msa0202630:CDS
GGCATTGCATAAAGAAATGT+TGG 0.467739 2_1:+25138271 None:intergenic
CACCATAGTTGTTTGTGAAA+GGG 0.468395 2_1:+25139751 None:intergenic
TTCACGAAGAATTGTTAAGA+AGG 0.473016 2_1:-25139219 Msa0202630:intron
ATAAACTTTGGCCACAAGAA+AGG 0.473197 2_1:-25136907 Msa0202630:CDS
TTGCATCAGGAGCAGCTTCA+GGG 0.474105 2_1:-25138822 Msa0202630:CDS
TATTACTTATGGAAGAAGTA+AGG 0.477112 2_1:-25137197 Msa0202630:CDS
AGGGAAACTATTGCAGTATG+AGG 0.481433 2_1:-25138803 Msa0202630:CDS
GTTATTGGTTGTGGTCCTGC+TGG 0.481480 2_1:-25139837 Msa0202630:CDS
GAGTTGTGTTGTTGCTAAAG+AGG 0.481683 2_1:-25141932 Msa0202630:CDS
GCAGCTAGAGCAAGACCAGC+AGG 0.483198 2_1:+25139822 None:intergenic
TGTGTGTGCAAACAGCTTAT+GGG 0.485667 2_1:-25138765 Msa0202630:CDS
TCATACAAAAGTGTTCTTTG+AGG 0.486804 2_1:-25138242 Msa0202630:intron
TTTCTCCTTAACCTCAAAGA+AGG 0.487945 2_1:+25142048 None:intergenic
ACTATTGCAGTATGAGGTTG+GGG 0.493808 2_1:-25138797 Msa0202630:CDS
ATTGTTCAGCTGGACATTGA+AGG 0.495105 2_1:-25136845 Msa0202630:CDS
AAAAGTTGGACTTATTGGTC+CGG 0.495439 2_1:-25139778 Msa0202630:CDS
CGTTGGAGCGAGAAACTTAA+CGG 0.502128 2_1:-25142091 Msa0202630:CDS
CATCTGCTTTCAGATCCTAC+AGG 0.507194 2_1:-25136034 Msa0202630:CDS
GGTACCCTGTATTGGGAGAC+AGG 0.508224 2_1:-25135947 Msa0202630:three_prime_UTR
GGCAAGTTAGGATTAAAAGT+TGG 0.508773 2_1:-25139792 Msa0202630:CDS
AGCTTATGGGGTGGAAGTTG+AGG 0.509754 2_1:-25138752 Msa0202630:intron
TATGCGAAAGCAAGTGGTGC+AGG 0.512407 2_1:-25141961 Msa0202630:CDS
ATGATACTGTAGTGCCCTGC+AGG 0.512630 2_1:-25138997 Msa0202630:intron
TTGTTTGTGAAAGGGAGATC+CGG 0.515364 2_1:+25139759 None:intergenic
TTGTATTGAGCATGTTTGGA+AGG 0.520513 2_1:-25139317 Msa0202630:CDS
CCACCTATCTCTATTGGAGA+TGG 0.520907 2_1:-25139876 Msa0202630:CDS
ACACCATAGTTGTTTGTGAA+AGG 0.521405 2_1:+25139750 None:intergenic
TGTTGAAACGACGACGTAGA+TGG 0.526248 2_1:+25142193 None:intergenic
CAGGTAAGCAGAAGAAAGTA+CGG 0.527877 2_1:+25136807 None:intergenic
CGTTTAAGTGCTTAGAACCA+TGG 0.541817 2_1:+25142154 None:intergenic
TTCGTTACAATGGAGTGCGT+TGG 0.541968 2_1:-25142108 Msa0202630:exon
ATCTTGGCTCAAAAGTAGAA+AGG 0.551209 2_1:-25139063 Msa0202630:CDS
AACACTGATCTTCGTTACAA+TGG 0.551274 2_1:-25142118 Msa0202630:exon
GTTCTTATGGCCGTGTCAGT+CGG 0.553276 2_1:-25139249 Msa0202630:CDS
CTTTCTTCTGCTTACCTGAG+TGG 0.554996 2_1:-25136802 Msa0202630:intron
TGGTCTTATATCCCAGTTGG+TGG 0.561768 2_1:-25137458 Msa0202630:CDS
AGCGAGAAACTTAACGGCAA+TGG 0.580164 2_1:-25142085 Msa0202630:CDS
CACAAACAACTATGGTGTGT+GGG 0.580409 2_1:-25139745 Msa0202630:CDS
CACACGTACAACACAGCACA+AGG 0.580909 2_1:+25135826 None:intergenic
TGGCAGCTGCACCAAATGCA+AGG 0.586864 2_1:+25137408 None:intergenic
TTTATCATAGTTGACCCTGT+AGG 0.596255 2_1:+25136019 None:intergenic
TCCTTATGATCCAAACGTGA+TGG 0.596727 2_1:-25138353 Msa0202630:CDS
GAAGCAAATGCCGACTGACA+CGG 0.598268 2_1:+25139239 None:intergenic
TAAAGAGGATTATGCTGATG+AGG 0.600491 2_1:-25141917 Msa0202630:CDS
AACGTACTATATCGTCAAGT+AGG 0.606795 2_1:+25135994 None:intergenic
TCACAAACAACTATGGTGTG+TGG 0.608110 2_1:-25139746 Msa0202630:CDS
TTTATTATCAATATATACAA+CGG 0.613565 2_1:+25139291 None:intergenic
GAATGGTCTTATATCCCAGT+TGG 0.614473 2_1:-25137461 Msa0202630:CDS
TTTGAATGACGGTAATGCAA+GGG 0.614670 2_1:-25137224 Msa0202630:CDS
CTAGCCTGTCTCCCAATACA+GGG 0.617031 2_1:+25135943 None:intergenic
GGATTTGCAATCTAAGCTTG+CGG 0.617671 2_1:-25141830 Msa0202630:CDS
GCATGCAAATCGTACCTGCA+GGG 0.621177 2_1:+25138983 None:intergenic
AGGATTGTTGAGGCTAGCAA+TGG 0.625598 2_1:-25139043 Msa0202630:CDS
AGAGGATTATGCTGATGAGG+AGG 0.633423 2_1:-25141914 Msa0202630:CDS
ATCTGCTTTCAGATCCTACA+GGG 0.639178 2_1:-25136033 Msa0202630:CDS
GAAACGACGACGTAGATGGT+TGG 0.640536 2_1:+25142197 None:intergenic
TTGGTAAGGATCCACCAACT+GGG 0.640890 2_1:+25137447 None:intergenic
AAAAGTAGAAAGGATTGTTG+AGG 0.645770 2_1:-25139053 Msa0202630:CDS
GAAAATAGACCATACCACTC+AGG 0.646689 2_1:+25136788 None:intergenic
GTGTGTGCAAACAGCTTATG+GGG 0.647388 2_1:-25138764 Msa0202630:CDS
AATACAGGGTACCTAACAAG+AGG 0.648747 2_1:+25135957 None:intergenic
GCAATTACTGAAGCATATTG+CGG 0.648771 2_1:+25137253 None:intergenic
AAACTGTATGCGAAAGCAAG+TGG 0.666138 2_1:-25141967 Msa0202630:CDS
AAGGAGAATCCATCAATGCG+AGG 0.669695 2_1:-25137178 Msa0202630:intron
CCATCTCCAATAGAGATAGG+TGG 0.670865 2_1:+25139876 None:intergenic
AAACAACTATGGTGTGTGGG+AGG 0.673871 2_1:-25139742 Msa0202630:CDS
AAACAATAGAAGATCTCTCG+AGG 0.702047 2_1:+25136111 None:intergenic
TGTGCAAACAGCTTATGGGG+TGG 0.724137 2_1:-25138761 Msa0202630:CDS
TTAAGTGCTTAGAACCATGG+TGG 0.744773 2_1:+25142157 None:intergenic
CTATTGCAGTATGAGGTTGG+GGG 0.774566 2_1:-25138796 Msa0202630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTTAATCAAAAAATAA+AGG + chr2_1:25136817-25136836 None:intergenic 10.0%
!! TTTATTATCAATATATACAA+CGG + chr2_1:25138761-25138780 None:intergenic 10.0%
!! AAAAAGATAGTAAAAATATA+AGG + chr2_1:25139479-25139498 None:intergenic 10.0%
!!! TTTTTCTTTAATAAATCAAA+AGG + chr2_1:25139945-25139964 None:intergenic 10.0%
!! GAAGTTTCAATATATAATAA+GGG + chr2_1:25139180-25139199 None:intergenic 15.0%
!! AGAAGTTTCAATATATAATA+AGG + chr2_1:25139181-25139200 None:intergenic 15.0%
!!! AAATATTTTCACAAAGTAAA+CGG + chr2_1:25139422-25139441 None:intergenic 15.0%
!! ATTAAATGTATAAAATGTGA+TGG - chr2_1:25139615-25139634 Msa0202630:intron 15.0%
!! AAAAAAATTAAGCAATAAGA+TGG + chr2_1:25141825-25141844 None:intergenic 15.0%
!!! TTAATTTTTTTCACACTTTT+GGG - chr2_1:25141834-25141853 Msa0202630:CDS 15.0%
!! AAGTTACATGAATATGATAT+TGG - chr2_1:25136507-25136526 Msa0202630:intron 20.0%
!! GCAATTAAAATTGAGTTTAA+TGG + chr2_1:25136571-25136590 None:intergenic 20.0%
!!! TATAACATTTTGAGCTTAAT+TGG + chr2_1:25136691-25136710 None:intergenic 20.0%
!! AAATGTAAAGAACAATGTTA+TGG - chr2_1:25136832-25136851 Msa0202630:CDS 20.0%
!! TATGTTCTGTCAATTTAAAA+TGG - chr2_1:25136943-25136962 Msa0202630:intron 20.0%
!! GTGTAGATATTTGAATTATA+TGG - chr2_1:25137053-25137072 Msa0202630:intron 20.0%
!! TTAAATTATTAAGGATGGAA+TGG - chr2_1:25137601-25137620 Msa0202630:intron 20.0%
!!! AAATGTGCTTTTTAAACATA+TGG - chr2_1:25137731-25137750 Msa0202630:intron 20.0%
!!! GAAAATATATACTGTTTTCA+AGG + chr2_1:25138620-25138639 None:intergenic 20.0%
!! AATAAAAATCCGATTTCAAT+TGG - chr2_1:25138775-25138794 Msa0202630:CDS 20.0%
!!! TTATTTCTGAATTAACTTCT+TGG - chr2_1:25138885-25138904 Msa0202630:intron 20.0%
!! ATGAATTACAAATCTACAAA+AGG + chr2_1:25138928-25138947 None:intergenic 20.0%
!!! AATTCATATTAATTTTCCCT+AGG - chr2_1:25138941-25138960 Msa0202630:intron 20.0%
!!! ATAGAAATGTTTTCAAAAAG+TGG - chr2_1:25139447-25139466 Msa0202630:intron 20.0%
!! TTATCAAGATTAAATACGAT+GGG - chr2_1:25139969-25139988 Msa0202630:intron 20.0%
!! ATGGTTCTTTCTAAATTATA+TGG - chr2_1:25140146-25140165 Msa0202630:intron 20.0%
!! TGGTTCTTTCTAAATTATAT+GGG - chr2_1:25140147-25140166 Msa0202630:intron 20.0%
!!! TTTTATCTTCAAATTTGTGT+AGG - chr2_1:25140566-25140585 Msa0202630:intron 20.0%
!!! AAAAAAGTAAGCATAGTTTT+CGG + chr2_1:25140960-25140979 None:intergenic 20.0%
!!! CATATATGTCATAGATATTT+TGG - chr2_1:25141287-25141306 Msa0202630:intron 20.0%
!! AATACCAATTCTATGTTATT+TGG - chr2_1:25141428-25141447 Msa0202630:intron 20.0%
!! TTATCCAAATAACATAGAAT+TGG + chr2_1:25141435-25141454 None:intergenic 20.0%
!!! ATTCTATGTTATTTGGATAA+TGG - chr2_1:25141435-25141454 Msa0202630:intron 20.0%
!! TGTGAAAAATCTAATATGAA+TGG - chr2_1:25141587-25141606 Msa0202630:intron 20.0%
!! GTGAAAAATCTAATATGAAT+GGG - chr2_1:25141588-25141607 Msa0202630:intron 20.0%
!!! GTTATGGTTTTTAGTAAAAA+GGG + chr2_1:25141713-25141732 None:intergenic 20.0%
!!! TGTTATGGTTTTTAGTAAAA+AGG + chr2_1:25141714-25141733 None:intergenic 20.0%
!!! CTTAATTTTTTTCACACTTT+TGG - chr2_1:25141833-25141852 Msa0202630:CDS 20.0%
!! ATAACCTATAAACTCTATTA+AGG + chr2_1:25142145-25142164 None:intergenic 20.0%
! ATTTAATTAGTATACTCTGC+TGG - chr2_1:25136345-25136364 Msa0202630:intron 25.0%
! ACAATGTTATGGAATTACTT+TGG - chr2_1:25136843-25136862 Msa0202630:CDS 25.0%
!! TGATTATTAATGAGAGTACA+AGG - chr2_1:25137288-25137307 Msa0202630:CDS 25.0%
!! GATTATTAATGAGAGTACAA+GGG - chr2_1:25137289-25137308 Msa0202630:intron 25.0%
!! ATTATTAATGAGAGTACAAG+GGG - chr2_1:25137290-25137309 Msa0202630:intron 25.0%
! TCCATCCTTAATAATTTAAC+TGG + chr2_1:25137600-25137619 None:intergenic 25.0%
! TCAAGTATTACATGATACTT+GGG - chr2_1:25137755-25137774 Msa0202630:intron 25.0%
! AGTTCATTGCTTGAAAAAAA+TGG + chr2_1:25137965-25137984 None:intergenic 25.0%
! ATTAGAAAGATATAGCAAGA+AGG + chr2_1:25138349-25138368 None:intergenic 25.0%
! TCTATGGTTCATAAAAAGAA+GGG + chr2_1:25138449-25138468 None:intergenic 25.0%
! TTCTATGGTTCATAAAAAGA+AGG + chr2_1:25138450-25138469 None:intergenic 25.0%
! TCCATTAAATGAAATCTGTT+AGG + chr2_1:25138521-25138540 None:intergenic 25.0%
!! AACAGTATATATTTTCTTGC+TGG - chr2_1:25138624-25138643 Msa0202630:intron 25.0%
!! ACAGTATATATTTTCTTGCT+GGG - chr2_1:25138625-25138644 Msa0202630:intron 25.0%
! AAATTATAATGAAGTGCACT+TGG + chr2_1:25138693-25138712 None:intergenic 25.0%
!! TTCATTATAATTTCAGGTCT+TGG - chr2_1:25138700-25138719 Msa0202630:intron 25.0%
! AGGGAAGTTTCAATATATTA+TGG + chr2_1:25139119-25139138 None:intergenic 25.0%
! AATATATAATAAGGGAAACC+TGG + chr2_1:25139172-25139191 None:intergenic 25.0%
!! AAATGTTTTCAAAAAGTGGA+AGG - chr2_1:25139451-25139470 Msa0202630:intron 25.0%
!! AATGTTTTCAAAAAGTGGAA+GGG - chr2_1:25139452-25139471 Msa0202630:intron 25.0%
! ATGTTATGTTGTTAAAGACA+AGG + chr2_1:25139571-25139590 None:intergenic 25.0%
! CTTTAATAAATCAAAAGGCA+TGG + chr2_1:25139940-25139959 None:intergenic 25.0%
! CTTATCAAGATTAAATACGA+TGG - chr2_1:25139968-25139987 Msa0202630:intron 25.0%
! TATCAAGATTAAATACGATG+GGG - chr2_1:25139970-25139989 Msa0202630:intron 25.0%
! AGTTACAAAAACTTATGAAG+AGG - chr2_1:25139998-25140017 Msa0202630:intron 25.0%
! AAAAACTTATGAAGAGGTAA+GGG - chr2_1:25140004-25140023 Msa0202630:intron 25.0%
! GTATTATCCTATATGGAAAA+TGG + chr2_1:25140221-25140240 None:intergenic 25.0%
! CAACTAAGTATTATCCTATA+TGG + chr2_1:25140228-25140247 None:intergenic 25.0%
! AAGATATGTAATAGTACGAT+AGG + chr2_1:25140281-25140300 None:intergenic 25.0%
!! ATTGCTACAATTTTGAATGA+CGG - chr2_1:25140814-25140833 Msa0202630:intron 25.0%
! TATTACTTATGGAAGAAGTA+AGG - chr2_1:25140852-25140871 Msa0202630:intron 25.0%
!! ATTTTCTTTTTCTTTCAGCT+TGG - chr2_1:25141118-25141137 Msa0202630:intron 25.0%
! AGAATTGGTATTATGAATTG+TGG + chr2_1:25141420-25141439 None:intergenic 25.0%
! TTTAGTGTTAACAATAAAGC+AGG + chr2_1:25141463-25141482 None:intergenic 25.0%
! TATATAAACACGATAGTACA+AGG - chr2_1:25141541-25141560 Msa0202630:intron 25.0%
! AGTTAATCATCATTCCATTA+TGG + chr2_1:25141872-25141891 None:intergenic 25.0%
! AGAGACATTCTTAAGTTATT+TGG + chr2_1:25141988-25142007 None:intergenic 25.0%
!!! ATAAACTTTTTCCTCTTGTT+AGG - chr2_1:25142081-25142100 Msa0202630:CDS 25.0%
TAAGGAGAAAGAAGATTTGT+TGG - chr2_1:25136014-25136033 Msa0202630:CDS 30.0%
! TATTTTACACCTCAAGTTCA+TGG - chr2_1:25136545-25136564 Msa0202630:intron 30.0%
CTAGCTTATTTGAGCTTAAT+TGG + chr2_1:25136608-25136627 None:intergenic 30.0%
AAATGGTGTCTCATTTCTTT+AGG - chr2_1:25137021-25137040 Msa0202630:intron 30.0%
! ATGAAATTGTAGCTCCTTTT+AGG - chr2_1:25137076-25137095 Msa0202630:intron 30.0%
! TGAAATTGTAGCTCCTTTTA+GGG - chr2_1:25137077-25137096 Msa0202630:intron 30.0%
! AAAAAAATTATCGAGTTGCC+AGG - chr2_1:25137110-25137129 Msa0202630:intron 30.0%
! AAAAAATTATCGAGTTGCCA+GGG - chr2_1:25137111-25137130 Msa0202630:intron 30.0%
GAGTAATTTCTATTGTGACA+AGG - chr2_1:25137146-25137165 Msa0202630:intron 30.0%
AATTTCTATTGTGACAAGGA+TGG - chr2_1:25137150-25137169 Msa0202630:intron 30.0%
AAAATTTGATTGTACAGGGT+TGG + chr2_1:25137320-25137339 None:intergenic 30.0%
TCGCAAAATTTGATTGTACA+GGG + chr2_1:25137324-25137343 None:intergenic 30.0%
GGAGTTGTGATTTAAATTTG+AGG - chr2_1:25137491-25137510 Msa0202630:intron 30.0%
TGCAGCCAGTTAAATTATTA+AGG - chr2_1:25137592-25137611 Msa0202630:intron 30.0%
GCCAGTTAAATTATTAAGGA+TGG - chr2_1:25137596-25137615 Msa0202630:intron 30.0%
!!! TGGGACTAATGCATTTTTTA+GGG - chr2_1:25137704-25137723 Msa0202630:intron 30.0%
CTCAAGTATTACATGATACT+TGG - chr2_1:25137754-25137773 Msa0202630:intron 30.0%
CAAGTATTACATGATACTTG+GGG - chr2_1:25137756-25137775 Msa0202630:intron 30.0%
AAGTATTACATGATACTTGG+GGG - chr2_1:25137757-25137776 Msa0202630:intron 30.0%
AACAAGGTATAGATGATTTG+GGG + chr2_1:25137789-25137808 None:intergenic 30.0%
GAACAAGGTATAGATGATTT+GGG + chr2_1:25137790-25137809 None:intergenic 30.0%
AGAACAAGGTATAGATGATT+TGG + chr2_1:25137791-25137810 None:intergenic 30.0%
TTTATTCATAGAAAGAGCCA+TGG + chr2_1:25137816-25137835 None:intergenic 30.0%
!! TCAAGCACAAATTGTCATTT+TGG - chr2_1:25137889-25137908 Msa0202630:intron 30.0%
GGATTAAAAGTTGGACTTAT+TGG - chr2_1:25138266-25138285 Msa0202630:CDS 30.0%
GCCTAACAGATTTCATTTAA+TGG - chr2_1:25138517-25138536 Msa0202630:intron 30.0%
CAAGGACATAAATATCAAAC+TGG + chr2_1:25138602-25138621 None:intergenic 30.0%
GTGCACTTCATTATAATTTC+AGG - chr2_1:25138694-25138713 Msa0202630:intron 30.0%
TAAGAACGTCCAATTGAAAT+CGG + chr2_1:25138787-25138806 None:intergenic 30.0%
ATTTCAATTGGACGTTCTTA+TGG - chr2_1:25138787-25138806 Msa0202630:CDS 30.0%
TTCACGAAGAATTGTTAAGA+AGG - chr2_1:25138830-25138849 Msa0202630:CDS 30.0%
AAAAGTAGAAAGGATTGTTG+AGG - chr2_1:25138996-25139015 Msa0202630:intron 30.0%
AACTTCTGTCCTGTTATTAT+AGG - chr2_1:25139194-25139213 Msa0202630:intron 30.0%
AGTAACAAGCCTATAATAAC+AGG + chr2_1:25139206-25139225 None:intergenic 30.0%
!!! GGTTTCTAGTGTTTTTATTC+AGG - chr2_1:25139337-25139356 Msa0202630:intron 30.0%
TTAATTGTTGTACTGTACAG+TGG - chr2_1:25139370-25139389 Msa0202630:intron 30.0%
! ATGTTTTCAAAAAGTGGAAG+GGG - chr2_1:25139453-25139472 Msa0202630:intron 30.0%
TATGTTGTTAAAGACAAGGA+AGG + chr2_1:25139567-25139586 None:intergenic 30.0%
AACAGAACTGCAATACTTAA+TGG + chr2_1:25139864-25139883 None:intergenic 30.0%
CAAAAACTTATGAAGAGGTA+AGG - chr2_1:25140003-25140022 Msa0202630:intron 30.0%
! GCTAGCTGTATTATATTTTG+AGG - chr2_1:25140037-25140056 Msa0202630:intron 30.0%
GTTCCACATAAATTTAGCAA+GGG - chr2_1:25140169-25140188 Msa0202630:intron 30.0%
ATTATACTGGAGAACATTGA+CGG - chr2_1:25140385-25140404 Msa0202630:intron 30.0%
TCTATTATGTAACAGCTCAA+AGG + chr2_1:25140466-25140485 None:intergenic 30.0%
TTGAGCTGTTACATAATAGA+TGG - chr2_1:25140466-25140485 Msa0202630:intron 30.0%
TGAGCTGTTACATAATAGAT+GGG - chr2_1:25140467-25140486 Msa0202630:intron 30.0%
TCTTCAAATTTGTGTAGGAA+TGG - chr2_1:25140571-25140590 Msa0202630:intron 30.0%
! TAATATCGTTTTCGTCCAAT+AGG - chr2_1:25140742-25140761 Msa0202630:intron 30.0%
! AAGCATAGTTTTCGGAATTT+TGG + chr2_1:25140952-25140971 None:intergenic 30.0%
AAAATGTCAGCTCTCAAATT+TGG + chr2_1:25141052-25141071 None:intergenic 30.0%
TTTCAGCTTGGAATAAACTT+TGG - chr2_1:25141130-25141149 Msa0202630:intron 30.0%
! CAGAGATCTTTCTTTCTTTT+TGG - chr2_1:25141171-25141190 Msa0202630:intron 30.0%
!! AGATATTTTGGACTTTGTAG+TGG - chr2_1:25141299-25141318 Msa0202630:intron 30.0%
AGATAGAAGATAGAATGTAG+AGG + chr2_1:25141359-25141378 None:intergenic 30.0%
CTACATTCTATCTTCTATCT+TGG - chr2_1:25141359-25141378 Msa0202630:intron 30.0%
CATAAAGGTTAGTAGTATTC+AGG - chr2_1:25141745-25141764 Msa0202630:intron 30.0%
TATATCACAAGAAAGCAAAC+TGG + chr2_1:25141793-25141812 None:intergenic 30.0%
!! GATTAACTGATTTTTATCGC+AGG - chr2_1:25141884-25141903 Msa0202630:CDS 30.0%
GGAACCTTAATAGAGTTTAT+AGG - chr2_1:25142138-25142157 Msa0202630:five_prime_UTR 30.0%
!!! CTTTTTTGAGAGGGATTGTA+TGG + chr2_1:25135830-25135849 None:intergenic 35.0%
AACACTGATCTTCGTTACAA+TGG - chr2_1:25135931-25135950 Msa0202630:three_prime_UTR 35.0%
TTTGCATAAGTCCTTCTTTG+AGG - chr2_1:25135990-25136009 Msa0202630:exon 35.0%
!! TAAGTCCTTCTTTGAGGTTA+AGG - chr2_1:25135996-25136015 Msa0202630:exon 35.0%
TTTCTCCTTAACCTCAAAGA+AGG + chr2_1:25136004-25136023 None:intergenic 35.0%
TAAAGAGGATTATGCTGATG+AGG - chr2_1:25136132-25136151 Msa0202630:CDS 35.0%
! TGATGAGGAGGATTTTGTTA+AGG - chr2_1:25136147-25136166 Msa0202630:intron 35.0%
AATGCAGCAGAAAAAGTCTA+TGG - chr2_1:25136198-25136217 Msa0202630:intron 35.0%
TTAAGCTCAAATAAGCTAGC+AGG - chr2_1:25136609-25136628 Msa0202630:intron 35.0%
!! TTTCTAGTTCCATCCCTAAA+AGG + chr2_1:25137093-25137112 None:intergenic 35.0%
! AAAAATTATCGAGTTGCCAG+GGG - chr2_1:25137112-25137131 Msa0202630:intron 35.0%
TATTGTGACAAGGATGGTTA+TGG - chr2_1:25137156-25137175 Msa0202630:intron 35.0%
CTCGCAAAATTTGATTGTAC+AGG + chr2_1:25137325-25137344 None:intergenic 35.0%
TGCGAGATTTAAGAATTCAC+TGG - chr2_1:25137339-25137358 Msa0202630:intron 35.0%
TGGTGTGATATCTCGTAAAA+AGG + chr2_1:25137439-25137458 None:intergenic 35.0%
TCAAGGAGCAATTGCTAATT+GGG + chr2_1:25137463-25137482 None:intergenic 35.0%
TTCAAGGAGCAATTGCTAAT+TGG + chr2_1:25137464-25137483 None:intergenic 35.0%
AATTAGCAATTGCTCCTTGA+AGG - chr2_1:25137463-25137482 Msa0202630:CDS 35.0%
AATGGCATGTTACAAAGGTT+AGG - chr2_1:25137619-25137638 Msa0202630:intron 35.0%
ATGGCATGTTACAAAGGTTA+GGG - chr2_1:25137620-25137639 Msa0202630:intron 35.0%
CAAAATTAGCAATTGTGTGC+AGG - chr2_1:25137667-25137686 Msa0202630:intron 35.0%
TGCAGGTTCTATAAAGAAAG+TGG - chr2_1:25137684-25137703 Msa0202630:intron 35.0%
GCAGGTTCTATAAAGAAAGT+GGG - chr2_1:25137685-25137704 Msa0202630:intron 35.0%
!!! GTGGGACTAATGCATTTTTT+AGG - chr2_1:25137703-25137722 Msa0202630:intron 35.0%
!!! GGGACTAATGCATTTTTTAG+GGG - chr2_1:25137705-25137724 Msa0202630:intron 35.0%
GCATTGTTAACTTTCATGCA+CGG - chr2_1:25137934-25137953 Msa0202630:intron 35.0%
GTACTAGATCTAGTCGTTAT+TGG - chr2_1:25138197-25138216 Msa0202630:intron 35.0%
GGCAAGTTAGGATTAAAAGT+TGG - chr2_1:25138257-25138276 Msa0202630:CDS 35.0%
AAAAGTTGGACTTATTGGTC+CGG - chr2_1:25138271-25138290 Msa0202630:CDS 35.0%
CACCATAGTTGTTTGTGAAA+GGG + chr2_1:25138301-25138320 None:intergenic 35.0%
ACACCATAGTTGTTTGTGAA+AGG + chr2_1:25138302-25138321 None:intergenic 35.0%
!! CTCTAAGATCACTGTTTCTA+TGG + chr2_1:25138465-25138484 None:intergenic 35.0%
ATAATGAAGTGCACTTGGTA+AGG + chr2_1:25138688-25138707 None:intergenic 35.0%
AAGGTTGTATTGAGCATGTT+TGG - chr2_1:25138728-25138747 Msa0202630:intron 35.0%
TTGTATTGAGCATGTTTGGA+AGG - chr2_1:25138732-25138751 Msa0202630:intron 35.0%
ATCTTGGCTCAAAAGTAGAA+AGG - chr2_1:25138986-25139005 Msa0202630:intron 35.0%
AAACTATTGCAGTATGAGGT+TGG - chr2_1:25139250-25139269 Msa0202630:CDS 35.0%
AACTATTGCAGTATGAGGTT+GGG - chr2_1:25139251-25139270 Msa0202630:CDS 35.0%
CAGATAAATGTTACCAAGTC+CGG - chr2_1:25139510-25139529 Msa0202630:intron 35.0%
AGATAAATGTTACCAAGTCC+GGG - chr2_1:25139511-25139530 Msa0202630:intron 35.0%
GGCATTGCATAAAGAAATGT+TGG + chr2_1:25139781-25139800 None:intergenic 35.0%
TATAGAGAAATTCCAATCGC+AGG - chr2_1:25139890-25139909 Msa0202630:intron 35.0%
CTAGCAATACACTTTCTAAC+AGG - chr2_1:25140064-25140083 Msa0202630:intron 35.0%
! TCAATTTTCAGCCAATAGGA+GGG + chr2_1:25140106-25140125 None:intergenic 35.0%
! TTCAATTTTCAGCCAATAGG+AGG + chr2_1:25140107-25140126 None:intergenic 35.0%
! CCATTCAATTTTCAGCCAAT+AGG + chr2_1:25140110-25140129 None:intergenic 35.0%
! CCTATTGGCTGAAAATTGAA+TGG - chr2_1:25140107-25140126 Msa0202630:intron 35.0%
GCTGAAAATTGAATGGTTCT+CGG - chr2_1:25140114-25140133 Msa0202630:intron 35.0%
GGTTCCACATAAATTTAGCA+AGG - chr2_1:25140168-25140187 Msa0202630:intron 35.0%
! GATGCATCCATTTTCCATAT+AGG - chr2_1:25140211-25140230 Msa0202630:intron 35.0%
! ACATTTTCTGATATTTGCCG+CGG - chr2_1:25140311-25140330 Msa0202630:intron 35.0%
! GCTGAAAGCATGTATTATAC+TGG - chr2_1:25140372-25140391 Msa0202630:intron 35.0%
TTATACTGGAGAACATTGAC+GGG - chr2_1:25140386-25140405 Msa0202630:intron 35.0%
AAAGGACAATTGGAAATCGA+GGG + chr2_1:25140448-25140467 None:intergenic 35.0%
GCAATTACTGAAGCATATTG+CGG + chr2_1:25140799-25140818 None:intergenic 35.0%
! TTTTGAATGACGGTAATGCA+AGG - chr2_1:25140824-25140843 Msa0202630:intron 35.0%
TTTGAATGACGGTAATGCAA+GGG - chr2_1:25140825-25140844 Msa0202630:intron 35.0%
GCAAGGGACATTATTACTTA+TGG - chr2_1:25140841-25140860 Msa0202630:intron 35.0%
ATTTGATTACCTCGCATTGA+TGG + chr2_1:25140883-25140902 None:intergenic 35.0%
! CATAGTTTTCGGAATTTTGG+AGG + chr2_1:25140949-25140968 None:intergenic 35.0%
TCAGACTTCTCATTGATGTA+AGG - chr2_1:25141071-25141090 Msa0202630:intron 35.0%
ATAAACTTTGGCCACAAGAA+AGG - chr2_1:25141142-25141161 Msa0202630:intron 35.0%
ATTAGCACTAATTGTTCAGC+TGG - chr2_1:25141194-25141213 Msa0202630:intron 35.0%
CACTAAACTAAAATCCCCTT+TGG - chr2_1:25141476-25141495 Msa0202630:intron 35.0%
AAGAACAGCTTGAATGGAAA+TGG + chr2_1:25141615-25141634 None:intergenic 35.0%
AACTCAAAGAACAGCTTGAA+TGG + chr2_1:25141621-25141640 None:intergenic 35.0%
TTAAATCTCTCCTATCCCTA+GGG + chr2_1:25141656-25141675 None:intergenic 35.0%
ATTAAATCTCTCCTATCCCT+AGG + chr2_1:25141657-25141676 None:intergenic 35.0%
!! TATGTCACGAGGTATTGTTA+TGG + chr2_1:25141729-25141748 None:intergenic 35.0%
AACAATACCTCGTGACATAA+AGG - chr2_1:25141730-25141749 Msa0202630:intron 35.0%
GGATTGAAATTGCTCCATAA+TGG - chr2_1:25141855-25141874 Msa0202630:CDS 35.0%
AAACAATAGAAGATCTCTCG+AGG + chr2_1:25141941-25141960 None:intergenic 35.0%
TTTATCATAGTTGACCCTGT+AGG + chr2_1:25142033-25142052 None:intergenic 35.0%
AACGTACTATATCGTCAAGT+AGG + chr2_1:25142058-25142077 None:intergenic 35.0%
! ACTCATTTTCAACACCACCA+TGG - chr2_1:25135878-25135897 Msa0202630:three_prime_UTR 40.0%
TTAAGTGCTTAGAACCATGG+TGG + chr2_1:25135895-25135914 None:intergenic 40.0%
CGTTTAAGTGCTTAGAACCA+TGG + chr2_1:25135898-25135917 None:intergenic 40.0%
AAACTGTATGCGAAAGCAAG+TGG - chr2_1:25136082-25136101 Msa0202630:CDS 40.0%
! GAGTTGTGTTGTTGCTAAAG+AGG - chr2_1:25136117-25136136 Msa0202630:CDS 40.0%
GGATTTGCAATCTAAGCTTG+CGG - chr2_1:25136219-25136238 Msa0202630:intron 40.0%
GTTTAATGGCCATGAACTTG+AGG + chr2_1:25136557-25136576 None:intergenic 40.0%
!! ATTGTAGCTCCTTTTAGGGA+TGG - chr2_1:25137081-25137100 Msa0202630:intron 40.0%
TTGCGGATGGTATATTACGA+GGG + chr2_1:25137409-25137428 None:intergenic 40.0%
AATTGCTCCTTGAAGGACAT+AGG - chr2_1:25137470-25137489 Msa0202630:intron 40.0%
GATGGAATGGCATGTTACAA+AGG - chr2_1:25137614-25137633 Msa0202630:intron 40.0%
! AAGGTATAGATGATTTGGGG+CGG + chr2_1:25137786-25137805 None:intergenic 40.0%
TCTATACCTTGTTCTGTCCA+TGG - chr2_1:25137796-25137815 Msa0202630:intron 40.0%
AAGACGTGTATGCCATAACA+CGG + chr2_1:25137864-25137883 None:intergenic 40.0%
TTAACTTTCACGTACAGCAC+TGG - chr2_1:25138024-25138043 Msa0202630:intron 40.0%
ACTCCATCTCCAATAGAGAT+AGG + chr2_1:25138179-25138198 None:intergenic 40.0%
! GATCTAGTCGTTATTGGTTG+TGG - chr2_1:25138203-25138222 Msa0202630:intron 40.0%
TTGTTTGTGAAAGGGAGATC+CGG + chr2_1:25138293-25138312 None:intergenic 40.0%
CTCCCTTTCACAAACAACTA+TGG - chr2_1:25138296-25138315 Msa0202630:CDS 40.0%
TCACAAACAACTATGGTGTG+TGG - chr2_1:25138303-25138322 Msa0202630:CDS 40.0%
CACAAACAACTATGGTGTGT+GGG - chr2_1:25138304-25138323 Msa0202630:CDS 40.0%
GGGCAAAACTGAAATCGTAA+GGG + chr2_1:25138429-25138448 None:intergenic 40.0%
AGGGCAAAACTGAAATCGTA+AGG + chr2_1:25138430-25138449 None:intergenic 40.0%
! ATTTCAGGTCTTGGACTTGA+AGG - chr2_1:25138709-25138728 Msa0202630:intron 40.0%
AACTTCCCTAAACCTTGCTA+TGG - chr2_1:25139130-25139149 Msa0202630:intron 40.0%
TACCTCCATAGCAAGGTTTA+GGG + chr2_1:25139138-25139157 None:intergenic 40.0%
ACAAAACTACCTCCATAGCA+AGG + chr2_1:25139145-25139164 None:intergenic 40.0%
AGGGAAACTATTGCAGTATG+AGG - chr2_1:25139246-25139265 Msa0202630:CDS 40.0%
ACTATTGCAGTATGAGGTTG+GGG - chr2_1:25139252-25139271 Msa0202630:CDS 40.0%
TGTGTGTGCAAACAGCTTAT+GGG - chr2_1:25139284-25139303 Msa0202630:CDS 40.0%
TAAAGACAAGGAAGGAAGCA+TGG + chr2_1:25139559-25139578 None:intergenic 40.0%
TCCTTATGATCCAAACGTGA+TGG - chr2_1:25139696-25139715 Msa0202630:intron 40.0%
ACCATCACGTTTGGATCATA+AGG + chr2_1:25139700-25139719 None:intergenic 40.0%
! TCCAAACGTGATGGTTTTCA+TGG - chr2_1:25139705-25139724 Msa0202630:intron 40.0%
TCCATGAAAACCATCACGTT+TGG + chr2_1:25139709-25139728 None:intergenic 40.0%
TTATGAAGAGGTAAGGGCTT+TGG - chr2_1:25140010-25140029 Msa0202630:intron 40.0%
ATTGAATGGTTCTCGGACTT+TGG - chr2_1:25140121-25140140 Msa0202630:intron 40.0%
GAGCCCTTGCTAAATTTATG+TGG + chr2_1:25140175-25140194 None:intergenic 40.0%
GGGCTCATCTTGTCAAAAAA+AGG - chr2_1:25140189-25140208 Msa0202630:intron 40.0%
AATAGTACGATAGGACAGAG+TGG + chr2_1:25140272-25140291 None:intergenic 40.0%
! AAATTGATGACCAATGACCG+CGG + chr2_1:25140331-25140350 None:intergenic 40.0%
GGGTAAAAGACTGCTATCAA+GGG + chr2_1:25140428-25140447 None:intergenic 40.0%
AGGGTAAAAGACTGCTATCA+AGG + chr2_1:25140429-25140448 None:intergenic 40.0%
CAAAGGACAATTGGAAATCG+AGG + chr2_1:25140449-25140468 None:intergenic 40.0%
GTAACAGCTCAAAGGACAAT+TGG + chr2_1:25140458-25140477 None:intergenic 40.0%
!! GAATGGTCTTATATCCCAGT+TGG - chr2_1:25140588-25140607 Msa0202630:intron 40.0%
CTTCTGTTCTGTGTTTGGTA+AGG + chr2_1:25140619-25140638 None:intergenic 40.0%
AGGTTCTTCTGTTCTGTGTT+TGG + chr2_1:25140624-25140643 None:intergenic 40.0%
GAACAGAAGAACCTTGCATT+TGG - chr2_1:25140630-25140649 Msa0202630:intron 40.0%
!! GGTCTAAGGTTCTAAGCTTA+CGG + chr2_1:25140910-25140929 None:intergenic 40.0%
! CTGGTAACATTTAGGGTCTA+AGG + chr2_1:25140924-25140943 None:intergenic 40.0%
GGAGGAACTGGTAACATTTA+GGG + chr2_1:25140931-25140950 None:intergenic 40.0%
TGGAGGAACTGGTAACATTT+AGG + chr2_1:25140932-25140951 None:intergenic 40.0%
!! TTTCGGAATTTTGGAGGAAC+TGG + chr2_1:25140943-25140962 None:intergenic 40.0%
CCAGATAGTAGAACTGTTTG+AGG + chr2_1:25140987-25141006 None:intergenic 40.0%
CCTCAAACAGTTCTACTATC+TGG - chr2_1:25140984-25141003 Msa0202630:intron 40.0%
ATTGTTCAGCTGGACATTGA+AGG - chr2_1:25141204-25141223 Msa0202630:intron 40.0%
CAGGTAAGCAGAAGAAAGTA+CGG + chr2_1:25141245-25141264 None:intergenic 40.0%
GAAAATAGACCATACCACTC+AGG + chr2_1:25141264-25141283 None:intergenic 40.0%
ATCTTCTATCTTGGCTTCAG+TGG - chr2_1:25141368-25141387 Msa0202630:intron 40.0%
AAAATCCCCTTTGGTATGCA+TGG - chr2_1:25141485-25141504 Msa0202630:intron 40.0%
ATCCTACCATGCATACCAAA+GGG + chr2_1:25141494-25141513 None:intergenic 40.0%
TATCCTACCATGCATACCAA+AGG + chr2_1:25141495-25141514 None:intergenic 40.0%
TATGCATGGTAGGATAGCAT+AGG - chr2_1:25141499-25141518 Msa0202630:intron 40.0%
! AGTTCTAATGAAAGCTCCCT+AGG - chr2_1:25141637-25141656 Msa0202630:intron 40.0%
GTTCTAATGAAAGCTCCCTA+GGG - chr2_1:25141638-25141657 Msa0202630:intron 40.0%
AAGGGAGTTGTAGCATGTAA+AGG + chr2_1:25141695-25141714 None:intergenic 40.0%
CTACTAACCTTTATGTCACG+AGG + chr2_1:25141740-25141759 None:intergenic 40.0%
! CTGATTTTTATCGCAGGATG+TGG - chr2_1:25141890-25141909 Msa0202630:CDS 40.0%
ATCTGCTTTCAGATCCTACA+GGG - chr2_1:25142016-25142035 Msa0202630:CDS 40.0%
! AATACAGGGTACCTAACAAG+AGG + chr2_1:25142095-25142114 None:intergenic 40.0%
TCTTGTTAGGTACCCTGTAT+TGG - chr2_1:25142094-25142113 Msa0202630:CDS 40.0%
CTTGTTAGGTACCCTGTATT+GGG - chr2_1:25142095-25142114 Msa0202630:CDS 40.0%
GAGACAGGCTAGATTACATT+AGG - chr2_1:25142117-25142136 Msa0202630:exon 40.0%
!!! TGGTTGGCGCTTTTTTGAGA+GGG + chr2_1:25135839-25135858 None:intergenic 45.0%
!!! ATGGTTGGCGCTTTTTTGAG+AGG + chr2_1:25135840-25135859 None:intergenic 45.0%
TGTTGAAACGACGACGTAGA+TGG + chr2_1:25135859-25135878 None:intergenic 45.0%
TTCGTTACAATGGAGTGCGT+TGG - chr2_1:25135941-25135960 Msa0202630:three_prime_UTR 45.0%
CGTTGGAGCGAGAAACTTAA+CGG - chr2_1:25135958-25135977 Msa0202630:three_prime_UTR 45.0%
AGCGAGAAACTTAACGGCAA+TGG - chr2_1:25135964-25135983 Msa0202630:three_prime_UTR 45.0%
AAGCTTCATCGAACGCGATT+CGG - chr2_1:25136047-25136066 Msa0202630:CDS 45.0%
AGAGGATTATGCTGATGAGG+AGG - chr2_1:25136135-25136154 Msa0202630:CDS 45.0%
! GAGGAGGATTTTGTTAAGGC+TGG - chr2_1:25136151-25136170 Msa0202630:intron 45.0%
! GAGGATTTTGTTAAGGCTGG+TGG - chr2_1:25136154-25136173 Msa0202630:intron 45.0%
GCAATCTAAGCTTGCGGATA+AGG - chr2_1:25136225-25136244 Msa0202630:intron 45.0%
CGCCACAATCTCATGATATG+TGG - chr2_1:25137192-25137211 Msa0202630:CDS 45.0%
CGCCACATATCATGAGATTG+TGG + chr2_1:25137197-25137216 None:intergenic 45.0%
CTTGCGGATGGTATATTACG+AGG + chr2_1:25137410-25137429 None:intergenic 45.0%
!! CGTAAAAAGGTGCTCTCTTG+CGG + chr2_1:25137426-25137445 None:intergenic 45.0%
GGAGCAATTGCTAATTGGGA+TGG + chr2_1:25137459-25137478 None:intergenic 45.0%
CACAACTCCTATGTCCTTCA+AGG + chr2_1:25137480-25137499 None:intergenic 45.0%
AAAGAGCCATGGACAGAACA+AGG + chr2_1:25137805-25137824 None:intergenic 45.0%
! ATGCCATAACACGGGTTACA+CGG + chr2_1:25137855-25137874 None:intergenic 45.0%
AGACGTGTATGCCATAACAC+GGG + chr2_1:25137863-25137882 None:intergenic 45.0%
GCAACTGCAAGAGCGATTAA+CGG + chr2_1:25138154-25138173 None:intergenic 45.0%
CAGTTGCCACCTATCTCTAT+TGG - chr2_1:25138167-25138186 Msa0202630:intron 45.0%
CCATCTCCAATAGAGATAGG+TGG + chr2_1:25138176-25138195 None:intergenic 45.0%
CCACCTATCTCTATTGGAGA+TGG - chr2_1:25138173-25138192 Msa0202630:intron 45.0%
AAACAACTATGGTGTGTGGG+AGG - chr2_1:25138307-25138326 Msa0202630:CDS 45.0%
GTGTGGGAGGACGAATTTAA+AGG - chr2_1:25138320-25138339 Msa0202630:CDS 45.0%
AGGATTGTTGAGGCTAGCAA+TGG - chr2_1:25139006-25139025 Msa0202630:CDS 45.0%
! TTCCCTAAACCTTGCTATGG+AGG - chr2_1:25139133-25139152 Msa0202630:intron 45.0%
CTACCTCCATAGCAAGGTTT+AGG + chr2_1:25139139-25139158 None:intergenic 45.0%
!! AGGCTTGTTACTGTTGCATC+AGG - chr2_1:25139214-25139233 Msa0202630:intron 45.0%
CTATTGCAGTATGAGGTTGG+GGG - chr2_1:25139253-25139272 Msa0202630:CDS 45.0%
GTGTGTGTGCAAACAGCTTA+TGG - chr2_1:25139283-25139302 Msa0202630:CDS 45.0%
GTGTGTGCAAACAGCTTATG+GGG - chr2_1:25139285-25139304 Msa0202630:CDS 45.0%
! AACAGTGTGCTGACAAGCTT+AGG - chr2_1:25139394-25139413 Msa0202630:intron 45.0%
ACCAATACTCAGAGACTTCC+CGG + chr2_1:25139532-25139551 None:intergenic 45.0%
! TGGTTCTCGGACTTTGGAAA+TGG - chr2_1:25140127-25140146 Msa0202630:intron 45.0%
!! TGGTCTTATATCCCAGTTGG+TGG - chr2_1:25140591-25140610 Msa0202630:intron 45.0%
TTGGTAAGGATCCACCAACT+GGG + chr2_1:25140605-25140624 None:intergenic 45.0%
TTTGGTAAGGATCCACCAAC+TGG + chr2_1:25140606-25140625 None:intergenic 45.0%
ATGTGACAATGTCATGCCTG+TGG + chr2_1:25140682-25140701 None:intergenic 45.0%
CTCACAACAGAGTAGCCTAT+TGG + chr2_1:25140760-25140779 None:intergenic 45.0%
CTCTGTTGTGAGATCGTTGT+CGG - chr2_1:25140768-25140787 Msa0202630:intron 45.0%
AAGGAGAATCCATCAATGCG+AGG - chr2_1:25140871-25140890 Msa0202630:intron 45.0%
! CTCTGTCGTTTCCTTTCTTG+TGG + chr2_1:25141156-25141175 None:intergenic 45.0%
CTTTCTTCTGCTTACCTGAG+TGG - chr2_1:25141247-25141266 Msa0202630:intron 45.0%
TTCTGCTTACCTGAGTGGTA+TGG - chr2_1:25141252-25141271 Msa0202630:intron 45.0%
TCCTACCATGCATACCAAAG+GGG + chr2_1:25141493-25141512 None:intergenic 45.0%
GGATAGCATAGGACACGATA+AGG - chr2_1:25141510-25141529 Msa0202630:intron 45.0%
AATGAAAGCTCCCTAGGGAT+AGG - chr2_1:25141643-25141662 Msa0202630:intron 45.0%
! TTTTATCGCAGGATGTGGCA+AGG - chr2_1:25141895-25141914 Msa0202630:CDS 45.0%
AGGATGTGGCAAGGATTTCT+TGG - chr2_1:25141904-25141923 Msa0202630:CDS 45.0%
CATCTGCTTTCAGATCCTAC+AGG - chr2_1:25142015-25142034 Msa0202630:CDS 45.0%
!!! TTTTTTTTTGTTATAATTTT+AGG - chr2_1:25139663-25139682 Msa0202630:intron 5.0%
GAAACGACGACGTAGATGGT+TGG + chr2_1:25135855-25135874 None:intergenic 50.0%
TATGCGAAAGCAAGTGGTGC+AGG - chr2_1:25136088-25136107 Msa0202630:CDS 50.0%
! TCGAGTTGCGCATTGATCGT+CGG - chr2_1:25136291-25136310 Msa0202630:intron 50.0%
!! CGCATTGATCGTCGGTTTGA+AGG - chr2_1:25136299-25136318 Msa0202630:intron 50.0%
! TACTCTACAGTTTTCGCCCC+TGG + chr2_1:25137131-25137150 None:intergenic 50.0%
!! AAAAGGTGCTCTCTTGCGGA+TGG + chr2_1:25137422-25137441 None:intergenic 50.0%
!!! CAGCACTGGTTTTCACGTCT+CGG - chr2_1:25138038-25138057 Msa0202630:intron 50.0%
! GTTATTGGTTGTGGTCCTGC+TGG - chr2_1:25138212-25138231 Msa0202630:intron 50.0%
CTTGCTCTAGCTGCTGAATC+TGG - chr2_1:25138236-25138255 Msa0202630:intron 50.0%
GCTGCTGAATCTGGCAAGTT+AGG - chr2_1:25138245-25138264 Msa0202630:CDS 50.0%
GTTCTTATGGCCGTGTCAGT+CGG - chr2_1:25138800-25138819 Msa0202630:CDS 50.0%
! GAAGCAAATGCCGACTGACA+CGG + chr2_1:25138813-25138832 None:intergenic 50.0%
GAGTCAGGTGTCTCGTATCT+TGG - chr2_1:25138970-25138989 Msa0202630:intron 50.0%
ATGATACTGTAGTGCCCTGC+AGG - chr2_1:25139052-25139071 Msa0202630:CDS 50.0%
GCATGCAAATCGTACCTGCA+GGG + chr2_1:25139069-25139088 None:intergenic 50.0%
AGCATGCAAATCGTACCTGC+AGG + chr2_1:25139070-25139089 None:intergenic 50.0%
!!! GGAGGTAGTTTTGTAGCACC+AGG - chr2_1:25139151-25139170 Msa0202630:intron 50.0%
TTGCATCAGGAGCAGCTTCA+GGG - chr2_1:25139227-25139246 Msa0202630:CDS 50.0%
GCTGTTTGCACACACACCTT+TGG + chr2_1:25139280-25139299 None:intergenic 50.0%
TGTGCAAACAGCTTATGGGG+TGG - chr2_1:25139288-25139307 Msa0202630:CDS 50.0%
AGCTTATGGGGTGGAAGTTG+AGG - chr2_1:25139297-25139316 Msa0202630:CDS 50.0%
TATGGGGTGGAAGTTGAGGT+AGG - chr2_1:25139301-25139320 Msa0202630:CDS 50.0%
ATGGGGTGGAAGTTGAGGTA+GGG - chr2_1:25139302-25139321 Msa0202630:CDS 50.0%
TCCGGGAAGTCTCTGAGTAT+TGG - chr2_1:25139528-25139547 Msa0202630:intron 50.0%
CCAAACACGTTTCCTGCGAT+TGG + chr2_1:25139905-25139924 None:intergenic 50.0%
CCAATCGCAGGAAACGTGTT+TGG - chr2_1:25139902-25139921 Msa0202630:intron 50.0%
CTGATATTTGCCGCGGTCAT+TGG - chr2_1:25140318-25140337 Msa0202630:intron 50.0%
TCCCCTTTGGTATGCATGGT+AGG - chr2_1:25141489-25141508 Msa0202630:intron 50.0%
CTAGCCTGTCTCCCAATACA+GGG + chr2_1:25142109-25142128 None:intergenic 50.0%
TCTAGCCTGTCTCCCAATAC+AGG + chr2_1:25142110-25142129 None:intergenic 50.0%
CACACGTACAACACAGCACA+AGG + chr2_1:25142226-25142245 None:intergenic 50.0%
ACGAGGGAGCGAAAGAGTTC+AGG + chr2_1:25137393-25137412 None:intergenic 55.0%
GTGCCGTGTAACCCGTGTTA+TGG - chr2_1:25137849-25137868 Msa0202630:intron 55.0%
TTCCCTAGGTGTGTCGAGTC+AGG - chr2_1:25138955-25138974 Msa0202630:intron 55.0%
! CACCTGACTCGACACACCTA+GGG + chr2_1:25138960-25138979 None:intergenic 55.0%
! ACACCTGACTCGACACACCT+AGG + chr2_1:25138961-25138980 None:intergenic 55.0%
GTTGCATCAGGAGCAGCTTC+AGG - chr2_1:25139226-25139245 Msa0202630:CDS 55.0%
GTATGAGGTTGGGGGTCCAA+AGG - chr2_1:25139261-25139280 Msa0202630:CDS 55.0%
TGGGGTGGAAGTTGAGGTAG+GGG - chr2_1:25139303-25139322 Msa0202630:CDS 55.0%
ACTCAGAGACTTCCCGGACT+TGG + chr2_1:25139526-25139545 None:intergenic 55.0%
CTCGACACACTCCCTCCTAT+TGG - chr2_1:25140092-25140111 Msa0202630:intron 55.0%
TGGCAGCTGCACCAAATGCA+AGG + chr2_1:25140644-25140663 None:intergenic 55.0%
!! ATTTGGTGCAGCTGCCAGCA+TGG - chr2_1:25140647-25140666 Msa0202630:intron 55.0%
GACAATGTCATGCCTGTGGC+TGG + chr2_1:25140678-25140697 None:intergenic 55.0%
GGTACCCTGTATTGGGAGAC+AGG - chr2_1:25142102-25142121 Msa0202630:CDS 55.0%
GCAGCTAGAGCAAGACCAGC+AGG + chr2_1:25138230-25138249 None:intergenic 60.0%
GGGGTGGAAGTTGAGGTAGG+GGG - chr2_1:25139304-25139323 Msa0202630:CDS 60.0%
TGGAAGTTGAGGTAGGGGGC+TGG - chr2_1:25139308-25139327 Msa0202630:CDS 60.0%
TGTGGCTGGATGCACCATGC+TGG + chr2_1:25140664-25140683 None:intergenic 60.0%
AGCATGGTGCATCCAGCCAC+AGG - chr2_1:25140663-25140682 Msa0202630:intron 60.0%
!! TGAGGTAGGGGGCTGGCTCT+TGG - chr2_1:25139315-25139334 Msa0202630:CDS 65.0%
!! GAGGTAGGGGGCTGGCTCTT+GGG - chr2_1:25139316-25139335 Msa0202630:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 25135817 25142254 25135817 ID=Msa0202630;Name=Msa0202630
chr2_1 mRNA 25135817 25142254 25135817 ID=Msa0202630-mRNA-1;Parent=Msa0202630;Name=Msa0202630-mRNA-1;_AED=0.07;_eAED=0.07;_QI=133|0.77|0.9|1|0.88|0.9|10|183|484
chr2_1 exon 25135817 25136165 25135817 ID=Msa0202630-mRNA-1:exon:9662;Parent=Msa0202630-mRNA-1
chr2_1 exon 25136803 25136935 25136803 ID=Msa0202630-mRNA-1:exon:9661;Parent=Msa0202630-mRNA-1
chr2_1 exon 25137179 25137307 25137179 ID=Msa0202630-mRNA-1:exon:9660;Parent=Msa0202630-mRNA-1
chr2_1 exon 25137420 25137483 25137420 ID=Msa0202630-mRNA-1:exon:9659;Parent=Msa0202630-mRNA-1
chr2_1 exon 25138243 25138386 25138243 ID=Msa0202630-mRNA-1:exon:9658;Parent=Msa0202630-mRNA-1
chr2_1 exon 25138753 25138855 25138753 ID=Msa0202630-mRNA-1:exon:9657;Parent=Msa0202630-mRNA-1
chr2_1 exon 25138998 25139108 25138998 ID=Msa0202630-mRNA-1:exon:9656;Parent=Msa0202630-mRNA-1
chr2_1 exon 25139220 25139355 25139220 ID=Msa0202630-mRNA-1:exon:9655;Parent=Msa0202630-mRNA-1
chr2_1 exon 25139730 25139901 25139730 ID=Msa0202630-mRNA-1:exon:9654;Parent=Msa0202630-mRNA-1
chr2_1 exon 25141825 25142254 25141825 ID=Msa0202630-mRNA-1:exon:9653;Parent=Msa0202630-mRNA-1
chr2_1 five_prime_UTR 25142122 25142254 25142122 ID=Msa0202630-mRNA-1:five_prime_utr;Parent=Msa0202630-mRNA-1
chr2_1 CDS 25141825 25142121 25141825 ID=Msa0202630-mRNA-1:cds;Parent=Msa0202630-mRNA-1
chr2_1 CDS 25139730 25139901 25139730 ID=Msa0202630-mRNA-1:cds;Parent=Msa0202630-mRNA-1
chr2_1 CDS 25139220 25139355 25139220 ID=Msa0202630-mRNA-1:cds;Parent=Msa0202630-mRNA-1
chr2_1 CDS 25138998 25139108 25138998 ID=Msa0202630-mRNA-1:cds;Parent=Msa0202630-mRNA-1
chr2_1 CDS 25138753 25138855 25138753 ID=Msa0202630-mRNA-1:cds;Parent=Msa0202630-mRNA-1
chr2_1 CDS 25138243 25138386 25138243 ID=Msa0202630-mRNA-1:cds;Parent=Msa0202630-mRNA-1
chr2_1 CDS 25137420 25137483 25137420 ID=Msa0202630-mRNA-1:cds;Parent=Msa0202630-mRNA-1
chr2_1 CDS 25137179 25137307 25137179 ID=Msa0202630-mRNA-1:cds;Parent=Msa0202630-mRNA-1
chr2_1 CDS 25136803 25136935 25136803 ID=Msa0202630-mRNA-1:cds;Parent=Msa0202630-mRNA-1
chr2_1 CDS 25136000 25136165 25136000 ID=Msa0202630-mRNA-1:cds;Parent=Msa0202630-mRNA-1
chr2_1 three_prime_UTR 25135817 25135999 25135817 ID=Msa0202630-mRNA-1:three_prime_utr;Parent=Msa0202630-mRNA-1
Gene Sequence

>Msa0202630

ATGGAGTGCGTTGGAGCGAGAAACTTAACGGCAATGGCGTTTTGCATAAGTCCTTCTTTGAGGTTAAGGAGAAAGAAGATTTGTTGGAGAAGAAGAGAAGCTTCATCGAACGCGATTCGGTTGCGTTCGATGAAACTGTATGCGAAAGCAAGTGGTGCAGGAAGTGAGAGTTGTGTTGTTGCTAAAGAGGATTATGCTGATGAGGAGGATTTTGTTAAGGCTGGTGGTTCTGAACTTGTTTTTGTTCAAATGCAGCAGAAAAAGTCTATGGATTTGCAATCTAAGCTTGCGGATAAGTTGCCACCTATCTCTATTGGAGATGGAGTACTAGATCTAGTCGTTATTGGTTGTGGTCCTGCTGGTCTTGCTCTAGCTGCTGAATCTGGCAAGTTAGGATTAAAAGTTGGACTTATTGGTCCGGATCTCCCTTTCACAAACAACTATGGTGTGTGGGAGGACGAATTTAAAGGTCTTGGACTTGAAGGTTGTATTGAGCATGTTTGGAAGGATACCGTTGTATATATTGATAATAAAAATCCGATTTCAATTGGACGTTCTTATGGCCGTGTCAGTCGGCATTTGCTTCACGAAGAATTGTTAAGAAGGTGTGTCGAGTCAGGTGTCTCGTATCTTGGCTCAAAAGTAGAAAGGATTGTTGAGGCTAGCAATGGTCATAATCATGTTGTCTGTGAATATGATACTGTAGTGCCCTGCAGGCTTGTTACTGTTGCATCAGGAGCAGCTTCAGGGAAACTATTGCAGTATGAGGTTGGGGGTCCAAAGGTGTGTGTGCAAACAGCTTATGGGGTGGAAGTTGAGGTTGAAAACAGTCCTTATGATCCAAACGTGATGGTTTTCATGGATTACAGAGATTATATGAAGAACAATGTTCAAACTCTAGAAGCTAAATATCCAACATTTCTTTATGCAATGCCCATGTCTCATACAAAAGTGTTCTTTGAGGAATGGTCTTATATCCCAGTTGGTGGATCCTTACCAAACACAGAACAGAAGAACCTTGCATTTGGCTACTCTGTTGTGAGATCGTTGTCGGAAGCTCCGCAATATGCTTCAGTAATTGCTACAATTTTGAATGACGGTAATGCAAGGGACATTATTACTTATGGAAGAAGTAAGGAGAATCCATCAATGCGAGCTTGGAATAAACTTTGGCCACAAGAAAGGAAACGACAGAGATCTTTCTTTCTTTTTGGATTAGCACTAATTGTTCAGCTGGACATTGAAGGCACTAGAACATTCTTCCGTACTTTCTTCTGCTTACCTGAGTGGATGTGGCAAGGATTTCTTGGTTCTTCTCTGTCCTCGAGAGATCTTCTATTGTTTGCACTCTACATGTTCATAATAGCACCAAATAACTTAAGAATGTCTCTAGTCAGACATCTGCTTTCAGATCCTACAGGGTCAACTATGATAAAAACCTACTTGACGATATAG

Protein sequence

>Msa0202630

MECVGARNLTAMAFCISPSLRLRRKKICWRRREASSNAIRLRSMKLYAKASGAGSESCVVAKEDYADEEDFVKAGGSELVFVQMQQKKSMDLQSKLADKLPPISIGDGVLDLVVIGCGPAGLALAAESGKLGLKVGLIGPDLPFTNNYGVWEDEFKGLGLEGCIEHVWKDTVVYIDNKNPISIGRSYGRVSRHLLHEELLRRCVESGVSYLGSKVERIVEASNGHNHVVCEYDTVVPCRLVTVASGAASGKLLQYEVGGPKVCVQTAYGVEVEVENSPYDPNVMVFMDYRDYMKNNVQTLEAKYPTFLYAMPMSHTKVFFEEWSYIPVGGSLPNTEQKNLAFGYSVVRSLSEAPQYASVIATILNDGNARDIITYGRSKENPSMRAWNKLWPQERKRQRSFFLFGLALIVQLDIEGTRTFFRTFFCLPEWMWQGFLGSSLSSRDLLLFALYMFIIAPNNLRMSLVRHLLSDPTGSTMIKTYLTI*