AlfalfaGEDB | Msa0777320

M. sativa cultivar zhongmu-4 / Msa0777320

KEGG: K11266
GO: GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000785 GO:0000819 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0032116 GO:0032501 GO:0032502 GO:0032991 GO:0034086 GO:0034088 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0097159 GO:0098813 GO:0140014 GO:1901363 GO:1903047
PFAM: PF10345.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777320	XP_003616084.1	98.352	728	11	1	39	765	1	728	0.0	1482

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777320	sp\|Q9FGN7\|SCC4_ARATH	61.210	727	275	5	41	765	5	726	0.0	902

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777320	G7K5W1	98.352	728	11	1	39	765	1	728	0.0	1482

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0777320	0.814629	1.397681e-51	-8.615850e-47
Msa0003220	Msa0777320	0.807765	4.307703e-50	-8.615850e-47
Msa0004860	Msa0777320	0.810374	1.190003e-50	-8.615850e-47
Msa0004920	Msa0777320	0.803877	2.826492e-49	-8.615850e-47
Msa0008220	Msa0777320	0.843645	1.233982e-58	-8.615850e-47
Msa0010770	Msa0777320	0.803140	4.017541e-49	-8.615850e-47
Msa0015120	Msa0777320	0.800701	1.273967e-48	-8.615850e-47
Msa0017320	Msa0777320	0.832396	9.682505e-56	-8.615850e-47
Msa0020410	Msa0777320	0.808545	2.938898e-50	-8.615850e-47
Msa0020930	Msa0777320	0.803367	3.606022e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777320	MtrunA17_Chr5g0433081	98.352	728	11	1	39	765	1	728	0.0	1482
Msa0777320	MtrunA17_Chr6g0469601	76.316	228	52	1	475	702	1	226	1.93e-119	358
Msa0777320	MtrunA17_Chr6g0469621	78.400	125	26	1	39	163	1	124	4.85e-61	202
Msa0777320	MtrunA17_Chr6g0469611	73.171	123	33	0	348	470	68	190	3.75e-55	187
Msa0777320	MtrunA17_Chr6g0469611	75.000	48	12	0	164	211	16	63	2.71e-18	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777320	AT5G51340.1	61.210	727	275	5	41	765	5	726	0.0	902

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Find 191 sgRNAs with CRISPR-Local

Find 659 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAAATAGTGGTGT+AGG	0.508592	5_2:-56179603	Msa0777320:three_prime_UTR
AAACAAGGTAATGGAGTCAA+TGG	0.429578	5_2:+56189961	None:intergenic
AAACCGAGGAGAAATAGCAA+AGG	0.702576	5_2:-56189824	Msa0777320:CDS
AACAAGATCTACAAGAAGCA+AGG	0.579321	5_2:-56183152	Msa0777320:intron
AACAAGGTAATGGAGTCAAT+GGG	0.449558	5_2:+56189962	None:intergenic
AACAGCTGAGAAACATGAAT+GGG	0.548330	5_2:-56185918	Msa0777320:CDS
AACTAGCATTGATGATGGAA+CGG	0.548065	5_2:+56179927	None:intergenic
AAGAAACAGCTGCATAAACT+TGG	0.488131	5_2:+56183418	None:intergenic
AAGAAAGAAAGAAACAAGAA+TGG	0.513471	5_2:-56189890	Msa0777320:CDS
AAGCAATAGCAGAAGGACTA+TGG	0.331016	5_2:-56189867	Msa0777320:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATCAAATTGGAACAAAG+GGG	+	chr5_2:56179713-56179732	None:intergenic	30.0%
TTTGTATCAGGGAGTTAATT+GGG	-	chr5_2:56180280-56180299	Msa0777320:intron	30.0%
GAAACTGTATTAACCACTAT+TGG	+	chr5_2:56180409-56180428	None:intergenic	30.0%
AAAATCATGATGTCTTGACA+AGG	-	chr5_2:56180815-56180834	Msa0777320:intron	30.0%
AAATCATGATGTCTTGACAA+GGG	-	chr5_2:56180816-56180835	Msa0777320:intron	30.0%
CTCTTATTGTTGAAAAAGGA+TGG	+	chr5_2:56180876-56180895	None:intergenic	30.0%
AACCCTCTTATTGTTGAAAA+AGG	+	chr5_2:56180880-56180899	None:intergenic	30.0%
AGAGGGTTATATGAAAAACT+TGG	-	chr5_2:56180892-56180911	Msa0777320:intron	30.0%
TTTGTAGGTTGTGTACAAAA+GGG	-	chr5_2:56181097-56181116	Msa0777320:intron	30.0%
TTAGAACATATTAGCATGTC+TGG	-	chr5_2:56181181-56181200	Msa0777320:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	56179340	56190027	56179340	ID=Msa0777320;Name=Msa0777320
chr5_2	mRNA	56179340	56190027	56179340	ID=Msa0777320-mRNA-1;Parent=Msa0777320;Name=Msa0777320-mRNA-1;_AED=0.09;_eAED=0.09;_QI=20\|1\|1\|1\|0.91\|1\|13\|542\|765
chr5_2	exon	56179340	56180076	56179340	ID=Msa0777320-mRNA-1:exon:16651;Parent=Msa0777320-mRNA-1
chr5_2	exon	56180169	56180293	56180169	ID=Msa0777320-mRNA-1:exon:16650;Parent=Msa0777320-mRNA-1
chr5_2	exon	56181891	56182096	56181891	ID=Msa0777320-mRNA-1:exon:16649;Parent=Msa0777320-mRNA-1
chr5_2	exon	56183153	56183277	56183153	ID=Msa0777320-mRNA-1:exon:16648;Parent=Msa0777320-mRNA-1
chr5_2	exon	56183383	56183472	56183383	ID=Msa0777320-mRNA-1:exon:16647;Parent=Msa0777320-mRNA-1
chr5_2	exon	56183680	56183826	56183680	ID=Msa0777320-mRNA-1:exon:16646;Parent=Msa0777320-mRNA-1
chr5_2	exon	56184899	56185020	56184899	ID=Msa0777320-mRNA-1:exon:16645;Parent=Msa0777320-mRNA-1
chr5_2	exon	56185117	56185155	56185117	ID=Msa0777320-mRNA-1:exon:16644;Parent=Msa0777320-mRNA-1
chr5_2	exon	56185692	56186193	56185692	ID=Msa0777320-mRNA-1:exon:16643;Parent=Msa0777320-mRNA-1
chr5_2	exon	56186343	56186459	56186343	ID=Msa0777320-mRNA-1:exon:16642;Parent=Msa0777320-mRNA-1
chr5_2	exon	56186897	56187038	56186897	ID=Msa0777320-mRNA-1:exon:16641;Parent=Msa0777320-mRNA-1
chr5_2	exon	56189438	56189598	56189438	ID=Msa0777320-mRNA-1:exon:16640;Parent=Msa0777320-mRNA-1
chr5_2	exon	56189681	56190027	56189681	ID=Msa0777320-mRNA-1:exon:16639;Parent=Msa0777320-mRNA-1
chr5_2	five_prime_UTR	56190008	56190027	56190008	ID=Msa0777320-mRNA-1:five_prime_utr;Parent=Msa0777320-mRNA-1
chr5_2	CDS	56189681	56190007	56189681	ID=Msa0777320-mRNA-1:cds;Parent=Msa0777320-mRNA-1
chr5_2	CDS	56189438	56189598	56189438	ID=Msa0777320-mRNA-1:cds;Parent=Msa0777320-mRNA-1
chr5_2	CDS	56186897	56187038	56186897	ID=Msa0777320-mRNA-1:cds;Parent=Msa0777320-mRNA-1
chr5_2	CDS	56186343	56186459	56186343	ID=Msa0777320-mRNA-1:cds;Parent=Msa0777320-mRNA-1
chr5_2	CDS	56185692	56186193	56185692	ID=Msa0777320-mRNA-1:cds;Parent=Msa0777320-mRNA-1
chr5_2	CDS	56185117	56185155	56185117	ID=Msa0777320-mRNA-1:cds;Parent=Msa0777320-mRNA-1
chr5_2	CDS	56184899	56185020	56184899	ID=Msa0777320-mRNA-1:cds;Parent=Msa0777320-mRNA-1
chr5_2	CDS	56183680	56183826	56183680	ID=Msa0777320-mRNA-1:cds;Parent=Msa0777320-mRNA-1
chr5_2	CDS	56183383	56183472	56183383	ID=Msa0777320-mRNA-1:cds;Parent=Msa0777320-mRNA-1
chr5_2	CDS	56183153	56183277	56183153	ID=Msa0777320-mRNA-1:cds;Parent=Msa0777320-mRNA-1
chr5_2	CDS	56181891	56182096	56181891	ID=Msa0777320-mRNA-1:cds;Parent=Msa0777320-mRNA-1
chr5_2	CDS	56180169	56180293	56180169	ID=Msa0777320-mRNA-1:cds;Parent=Msa0777320-mRNA-1
chr5_2	CDS	56179882	56180076	56179882	ID=Msa0777320-mRNA-1:cds;Parent=Msa0777320-mRNA-1
chr5_2	three_prime_UTR	56179340	56179881	56179340	ID=Msa0777320-mRNA-1:three_prime_utr;Parent=Msa0777320-mRNA-1

Gene Sequence

>Msa0777320

ATGTGTGATTTTTCTTTCCCTTCCCCATTGACTCCATTACCTTGTTTCAAACAAAATAAAAAAAAACATAATCAGAAAACAAAAACAAAGAATCTAAGAAAGAAAGAAACAAGAATGGAAGCAATAGCAGAAGGACTATGGGGATTAGCAGACCATCATGAAAACCGAGGAGAAATAGCAAAGGCAGTAAAATGTCTAGAAGCAATCTGTCAAAGCCAAGTTTCCTTCTTCCCAATCGTTGAAGTCAAAACTCGTCTTCGTATCGCCACAATCCTTCTTCATCATTCCCATAACGCTAATCACGCTAAATCTCACCTCGAACGTTGTCAATTGTTGTTGAAGGCTATACCATCTTGTTTTGAGTTGAAGTGTAGAGCTTACAGTTTGTTGAGTCAGTGTTATCATCTTGTTGGAGCTATTCAACCTCAGAAACAGGTTTTGTTTAAGGGTCTTGATCTTGCTGCTTCTTCTGGAAATGGAAATAATGAGATTTCAACAAAGTTGTGGTCTTGCAACTTCAACTCACAGCTTGCAAATGCTTTGTCAATTGAAGGAGACTACCGGGGTTCAATATCCGCCTTAGAATGTGGATATGCCTGTGCTACTGAAGTATGCTACCCAGAGTTGCAGATGTTCTTTGCCACTTCATTATTGCATGCCCACCTCATGCAATGGGATGATGATAATTTGGTTGAGCAAGCTGTTAATAAATGCAATGAGATTTGGGAGTCAATTCAGCCAGATAAAAGACAACAATGCCCTGGCTTGCTCTTTTATAATGAATTACTGCACATATTCTATCGTACGCGGGTATGTGATTACAAGAATGCTGCACCCCATGTGGACAATCTGGATGCTGCTGTGAGGGCTGAAAAGAGGCAAACACAACACATGCAAGAGCTAGTGAAGGAGCTCAGTGTCTTAGATCAAAGTCTTTCCAGGTCTGATCTTCACTACAGGGAAAGGGCAGCGTTGTCTGAAAAGCAAGCAATGATTCAAGAACAGCTGAGAAACATGAATGGGTTCAGTTCAATTGGGAGGGACTCTCTTGAACCAGTATATTTTGGGAATGGCAGAAGGACACTAGGAGATAAGCTTCAGTTAGCACCACCTCCTATTGATGGGGAATGGCTTCCTAAAAGTGCTATCTATGCACTAGTTGATCTGATAACTGTTGTATTTGGGCGCCCAAAAGGACTTTTTAAGGAGTGTGGAAAGCGCATACAGTCGGGGATGCGTATAATTCAAGATGAGTTATTGAAGCTTGGAATTACTGATGGTGTCAGAGAAGTGGACTTGCAACACTCTTCTATCTATATGGCTGGAGTATACTTAATGCTACTAATTCAGTTTCTTGAAAACAAAGTGGCCTTAGAGCTCACACGAGCAGAATACGCTGAAGCGCAGCAGGCTTTGGTTCAGATGAAAAATTGGTTCATGCGGTTTCCGACTATATTACAGCCATGTGAATGCATCATTGAGATGCTAAGAGGCCAATATGCTCATTCTGTTGGCTGTTATAATGAAGCCGTCTTTCATTATATTGAAGCAGTAAAGCTCACGGACAGCAAATCAATGCAAGCTATGTGCCAAGTTTATGCAGCTGTTTCTTATATCTGCATTGGTGATGCTGAATCTAATTCACAGGCACTTGATTTGATTGGGCCAGTTTATGAAGTAATGGATTCTTTTGTAGGGGTTAGAGAGAAAACTGGTGTTCTCTTTGCTTACGGACTTTTATTGATGAAGCAACAAGATCTACAAGAAGCAAGAATTCGTTTGGCGAAGGGATTGCAGTTGACACATACTTATTTGGGGAACCTTCAACTTATTTCCCAATATTTAACAACCCTTGGCAGTTTGGCCATTGTATTGCGTGACACTGTACAAGCCAGGGAGATTTTGAGATCGTCTTTGACCTTGGCAAAGAAGCTTTGTGATGTTCCTTCTCAAGTCTGGGTGCTGACTGTTTTGACAGCTTTATATAAAGAATTAGGAGAAAGAGGAAATGAATTGGACAATGCTGATTATCAGACAAAAAAATCTGAAGACCTGCATAAGAGGCTGGCTGATGCACAAGCGTCCATTTATCATATTGAAATAATTGAGAGAGTAAGATTTGAAGTTCCACAATTACATGAGTTGGAAATCAGGCGTGCAATGGCAGGACCAAGCATGGGAGTTAATAATCTTGATATTCCAGAATCTATTGGCCTGCCAGCACAAGCACCCGTTCCATCATCAATGCTAGTTGATATAGATGGTAGTGGTAGAAGACGTGGAAAACGGAGAATTTAG

Protein sequence

>Msa0777320

MCDFSFPSPLTPLPCFKQNKKKHNQKTKTKNLRKKETRMEAIAEGLWGLADHHENRGEIAKAVKCLEAICQSQVSFFPIVEVKTRLRIATILLHHSHNANHAKSHLERCQLLLKAIPSCFELKCRAYSLLSQCYHLVGAIQPQKQVLFKGLDLAASSGNGNNEISTKLWSCNFNSQLANALSIEGDYRGSISALECGYACATEVCYPELQMFFATSLLHAHLMQWDDDNLVEQAVNKCNEIWESIQPDKRQQCPGLLFYNELLHIFYRTRVCDYKNAAPHVDNLDAAVRAEKRQTQHMQELVKELSVLDQSLSRSDLHYRERAALSEKQAMIQEQLRNMNGFSSIGRDSLEPVYFGNGRRTLGDKLQLAPPPIDGEWLPKSAIYALVDLITVVFGRPKGLFKECGKRIQSGMRIIQDELLKLGITDGVREVDLQHSSIYMAGVYLMLLIQFLENKVALELTRAEYAEAQQALVQMKNWFMRFPTILQPCECIIEMLRGQYAHSVGCYNEAVFHYIEAVKLTDSKSMQAMCQVYAAVSYICIGDAESNSQALDLIGPVYEVMDSFVGVREKTGVLFAYGLLLMKQQDLQEARIRLAKGLQLTHTYLGNLQLISQYLTTLGSLAIVLRDTVQAREILRSSLTLAKKLCDVPSQVWVLTVLTALYKELGERGNELDNADYQTKKSEDLHKRLADAQASIYHIEIIERVRFEVPQLHELEIRRAMAGPSMGVNNLDIPESIGLPAQAPVPSSMLVDIDGSGRRRGKRRI*