AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0774750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0774750 MtrunA17_Chr4g0020281 73.950 119 0 1 1 119 1 88 5.77e-54 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0774750 AT3G52040.1 49.123 114 25 2 1 112 1 83 6.45e-28 98.2

Find 40 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATGAAAGAATTAGAATT+AGG 0.193966 5_2:+51293677 None:intergenic
TTGGTAGGTTGGTTGGGACT+TGG 0.261222 5_2:-51289977 Msa0774750:three_prime_UTR
TAGAGATTGATGTGATTATT+TGG 0.271214 5_2:+51289909 None:intergenic
TGACCAGCCAGAATCCATTT+TGG 0.294525 5_2:+51289744 None:intergenic
AAAGAATTAGAATTAGGGTT+AGG 0.316368 5_2:+51293683 None:intergenic
AAATGAAAGAATTAGAATTA+GGG 0.317434 5_2:+51293678 None:intergenic
TGGTAGGTTGGTTGGGACTT+GGG 0.320882 5_2:-51289976 Msa0774750:three_prime_UTR
AATTGAACCAAAATGGATTC+TGG 0.340691 5_2:-51289751 Msa0774750:three_prime_UTR
AACGAAAGTTACAAAGGATA+TGG 0.347960 5_2:-51293442 Msa0774750:CDS
GAATCGATTTCTTCTTAGTT+TGG 0.349646 5_2:+51293607 None:intergenic
GACTTGGGAGAGTTTGTTTA+CGG 0.371848 5_2:-51289961 Msa0774750:three_prime_UTR
ATATACAAATTGAACCAAAA+TGG 0.373680 5_2:-51289758 Msa0774750:three_prime_UTR
TCGATTTCGAAATATACAAT+TGG 0.376395 5_2:+51293723 None:intergenic
GTTTACGGTTACACATTTGT+AGG 0.383012 5_2:-51289946 Msa0774750:three_prime_UTR
GGGAAGGTTTGAATATATAT+AGG 0.399973 5_2:-51290048 Msa0774750:three_prime_UTR
AATTTACCTTTGCGAGTTTG+AGG 0.415610 5_2:+51293561 None:intergenic
CGATTTCGAAATATACAATT+GGG 0.415895 5_2:+51293724 None:intergenic
AAGAATTAGAATTAGGGTTA+GGG 0.422423 5_2:+51293684 None:intergenic
TGAATATATATAGGAGAAGA+TGG 0.439430 5_2:-51290039 Msa0774750:three_prime_UTR
ATATCCTTTGTAACTTTCGT+TGG 0.460250 5_2:+51293444 None:intergenic
AAAGCTAAGAAATGTGTGTA+TGG 0.464251 5_2:-51292190 Msa0774750:CDS
CTGCTTTAACTTCATTGCAA+TGG 0.485488 5_2:+51290165 None:intergenic
TCTGCACCACTTGCAGACTC+TGG 0.508695 5_2:+51290092 None:intergenic
ATGTGTGTATGGACTGTTAC+GGG 0.512971 5_2:-51292179 Msa0774750:intron
ACTTTGCCATGACGATTAGC+AGG 0.529511 5_2:+51293585 None:intergenic
AGGATCAGTTGAACATCTGT+CGG 0.555154 5_2:+51292353 None:intergenic
GGATCAGTTGAACATCTGTC+GGG 0.563586 5_2:+51292354 None:intergenic
GAATATATATAGGAGAAGAT+GGG 0.573899 5_2:-51290038 Msa0774750:three_prime_UTR
TCGATTCCTGCTAATCGTCA+TGG 0.587351 5_2:-51293591 Msa0774750:CDS
TGGGATATGAAGATTTGTTG+AGG 0.593585 5_2:-51290019 Msa0774750:three_prime_UTR
AAAGTACCTCAAACTCGCAA+AGG 0.619602 5_2:-51293567 Msa0774750:intron
GCGACTGTAGCTACAAAGGA+CGG 0.622949 5_2:-51290143 Msa0774750:CDS
AGATGTTCAACTGATCCTCT+CGG 0.627027 5_2:-51292348 Msa0774750:CDS
TATCTGCAGAAGAAGACTGA+GGG 0.633770 5_2:-51292380 Msa0774750:intron
AGCAGCGACTGTAGCTACAA+AGG 0.651640 5_2:-51290147 Msa0774750:CDS
ACAGCACCAGAGTCTGCAAG+TGG 0.658489 5_2:-51290098 Msa0774750:CDS
AATGTGTGTATGGACTGTTA+CGG 0.666756 5_2:-51292180 Msa0774750:CDS
GAAGCCAACGAAAGTTACAA+AGG 0.673022 5_2:-51293448 Msa0774750:CDS
ATATCTGCAGAAGAAGACTG+AGG 0.682318 5_2:-51292381 Msa0774750:intron
ACTGTAGCTACAAAGGACGG+TGG 0.767361 5_2:-51290140 Msa0774750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAACAATAAAAAAAATAA+TGG + chr5_2:51289961-51289980 None:intergenic 10.0%
!! ATACAATTATCTAATTTAAT+TGG - chr5_2:51290738-51290757 Msa0774750:intron 10.0%
!! AAATGAAAGAATTAGAATTA+GGG + chr5_2:51289815-51289834 None:intergenic 15.0%
!!! TTTAATTTTCAGTTATGATT+TGG - chr5_2:51290146-51290165 Msa0774750:CDS 15.0%
!!! TTAATTTTCAGTTATGATTT+GGG - chr5_2:51290147-51290166 Msa0774750:CDS 15.0%
!! TATATTAACAGTTTAAACAA+TGG - chr5_2:51290828-51290847 Msa0774750:intron 15.0%
!! AATACTAATTATAGAGAAAT+AGG - chr5_2:51290968-51290987 Msa0774750:intron 15.0%
!!! TGAATTTTTTTTTAATCAAG+TGG + chr5_2:51291209-51291228 None:intergenic 15.0%
!! ATTAAAAAAAAATTCAAGCA+AGG - chr5_2:51291213-51291232 Msa0774750:intron 15.0%
!!! TATCATAACATTTTAAATTG+TGG - chr5_2:51291342-51291361 Msa0774750:intron 15.0%
!! AGAATAAAGAGTTAATTTAA+TGG + chr5_2:51291505-51291524 None:intergenic 15.0%
!!! TTTATTCTCTTAAATTTTGT+TGG - chr5_2:51291517-51291536 Msa0774750:intron 15.0%
!! AAAATGAAAACAAACAATAT+TGG - chr5_2:51291698-51291717 Msa0774750:intron 15.0%
!! AACTTTATTCTCTTAAAATT+TGG + chr5_2:51291911-51291930 None:intergenic 15.0%
!! AGATAAATAGTTATGAAAAA+AGG - chr5_2:51293418-51293437 Msa0774750:intron 15.0%
!!! TTTCTTTTAAACAATTTGAT+TGG + chr5_2:51293683-51293702 None:intergenic 15.0%
!! GAAATGAAAGAATTAGAATT+AGG + chr5_2:51289816-51289835 None:intergenic 20.0%
!! TATCTTATAGGACTTAATTA+GGG + chr5_2:51290443-51290462 None:intergenic 20.0%
!! TTATCTTATAGGACTTAATT+AGG + chr5_2:51290444-51290463 None:intergenic 20.0%
!! CTGTTAATATACATTATCAT+AGG + chr5_2:51290819-51290838 None:intergenic 20.0%
!!! ATATTGACTTAACTCTTTTT+TGG - chr5_2:51290861-51290880 Msa0774750:intron 20.0%
!!! TATTGACTTAACTCTTTTTT+GGG - chr5_2:51290862-51290881 Msa0774750:intron 20.0%
!!! ATTGTGTAAATGATTTTTCA+CGG + chr5_2:51291168-51291187 None:intergenic 20.0%
!!! TTAATGGTATGAACTTTTTA+AGG + chr5_2:51291489-51291508 None:intergenic 20.0%
!!! TAAATTTTGTTGGATATACA+AGG - chr5_2:51291527-51291546 Msa0774750:intron 20.0%
!!! TTTCATAAGGTTTTAAATCA+CGG + chr5_2:51292039-51292058 None:intergenic 20.0%
!!! TTGAGTTAGTATTTTTTGTA+TGG - chr5_2:51292346-51292365 Msa0774750:CDS 20.0%
!! TAGTTTAAACAATGTTTACT+AGG - chr5_2:51292779-51292798 Msa0774750:intron 20.0%
!!! TCATATGCAATGTTTTATAT+TGG - chr5_2:51292847-51292866 Msa0774750:intron 20.0%
!! TAAATAGTTATGAAAAAAGG+AGG - chr5_2:51293421-51293440 Msa0774750:intron 20.0%
!! AAATAGTTATGAAAAAAGGA+GGG - chr5_2:51293422-51293441 Msa0774750:intron 20.0%
!! ATATACAAATTGAACCAAAA+TGG - chr5_2:51293732-51293751 Msa0774750:five_prime_UTR 20.0%
! CGATTTCGAAATATACAATT+GGG + chr5_2:51289769-51289788 None:intergenic 25.0%
! TCGATTTCGAAATATACAAT+TGG + chr5_2:51289770-51289789 None:intergenic 25.0%
! AAGAATTAGAATTAGGGTTA+GGG + chr5_2:51289809-51289828 None:intergenic 25.0%
! AAAGAATTAGAATTAGGGTT+AGG + chr5_2:51289810-51289829 None:intergenic 25.0%
!! CAGAAATCAAAACTTTTCAA+GGG - chr5_2:51289860-51289879 Msa0774750:three_prime_UTR 25.0%
!! AATTGTGAACTTTTCTTTAC+AGG - chr5_2:51290007-51290026 Msa0774750:three_prime_UTR 25.0%
!! ATTGTGAACTTTTCTTTACA+GGG - chr5_2:51290008-51290027 Msa0774750:three_prime_UTR 25.0%
! GAAAATTAGAGAAAAGCAAA+AGG + chr5_2:51290092-51290111 None:intergenic 25.0%
!!! AATTTGTACTGTGTTTTTTG+TGG - chr5_2:51290118-51290137 Msa0774750:CDS 25.0%
! CAAAATAAGTTCAATCCAAA+CGG + chr5_2:51290236-51290255 None:intergenic 25.0%
! TTGATAAGCACTTATCTTAT+AGG + chr5_2:51290455-51290474 None:intergenic 25.0%
!!! CATACTTTCTTGTTTTACTT+TGG + chr5_2:51290501-51290520 None:intergenic 25.0%
! CAAAGTAAAACAAGAAAGTA+TGG - chr5_2:51290499-51290518 Msa0774750:intron 25.0%
!! AAGCCATAAATTGTTTTCAT+CGG - chr5_2:51290539-51290558 Msa0774750:intron 25.0%
!!! ATTGACTTAACTCTTTTTTG+GGG - chr5_2:51290863-51290882 Msa0774750:intron 25.0%
! ACCACATTATATATTGTGAA+TGG - chr5_2:51291807-51291826 Msa0774750:intron 25.0%
! CCACATTATATATTGTGAAT+GGG - chr5_2:51291808-51291827 Msa0774750:intron 25.0%
! AGAATAAAGTTTCAATCCAA+TGG - chr5_2:51291920-51291939 Msa0774750:intron 25.0%
!! TTTTTAACACTTCATACCAT+TGG + chr5_2:51291939-51291958 None:intergenic 25.0%
!! TTATTATCTAGGATGATCAA+AGG + chr5_2:51292100-51292119 None:intergenic 25.0%
!!! ACTCGATTGTTTTATTATCT+AGG + chr5_2:51292111-51292130 None:intergenic 25.0%
! TTATGCTAGTAAATAACCTT+AGG - chr5_2:51292598-51292617 Msa0774750:intron 25.0%
!!! TGTTTTTTTGTATGCTTCTA+TGG - chr5_2:51292702-51292721 Msa0774750:intron 25.0%
!!! TATTGGCTTTACTCTTTTTT+TGG - chr5_2:51292864-51292883 Msa0774750:intron 25.0%
!!! ATTGGCTTTACTCTTTTTTT+GGG - chr5_2:51292865-51292884 Msa0774750:intron 25.0%
!! ATTAGCAAAACACACATTTT+AGG - chr5_2:51292922-51292941 Msa0774750:intron 25.0%
!!! TAGGTTTGTTGAATAATATC+TGG - chr5_2:51292949-51292968 Msa0774750:intron 25.0%
! TGGTTTAAACATCTAAAAAG+TGG - chr5_2:51292969-51292988 Msa0774750:intron 25.0%
!! ATCATCAACATGTTTTCATA+AGG + chr5_2:51293058-51293077 None:intergenic 25.0%
! ACAAGGACTACATAAATATT+AGG + chr5_2:51293101-51293120 None:intergenic 25.0%
!! TATTTCTAAAAGCTACTACA+AGG + chr5_2:51293118-51293137 None:intergenic 25.0%
!!! TGTAGTAGCTTTTAGAAATA+AGG - chr5_2:51293118-51293137 Msa0774750:intron 25.0%
! TGAATATATATAGGAGAAGA+TGG - chr5_2:51293451-51293470 Msa0774750:CDS 25.0%
! GAATATATATAGGAGAAGAT+GGG - chr5_2:51293452-51293471 Msa0774750:CDS 25.0%
! TAGAGATTGATGTGATTATT+TGG + chr5_2:51293584-51293603 None:intergenic 25.0%
!! AACAATTTGATTGGATTTTG+AGG + chr5_2:51293674-51293693 None:intergenic 25.0%
! GCAGAAATCAAAACTTTTCA+AGG - chr5_2:51289859-51289878 Msa0774750:three_prime_UTR 30.0%
! GAATCGATTTCTTCTTAGTT+TGG + chr5_2:51289886-51289905 None:intergenic 30.0%
ATATCCTTTGTAACTTTCGT+TGG + chr5_2:51290049-51290068 None:intergenic 30.0%
AACGAAAGTTACAAAGGATA+TGG - chr5_2:51290048-51290067 Msa0774750:three_prime_UTR 30.0%
!! TTCAGTTATGATTTGGGTTT+TGG - chr5_2:51290153-51290172 Msa0774750:CDS 30.0%
! AAAGTATTCATGTTTCTGCT+TGG - chr5_2:51290193-51290212 Msa0774750:intron 30.0%
! TAATTAGGGTCTTTTTGGAT+TGG + chr5_2:51290429-51290448 None:intergenic 30.0%
TTATGGCAGTAAATAAGCTT+AGG - chr5_2:51290659-51290678 Msa0774750:intron 30.0%
AATAAACAAGCTTCTGCATT+TGG + chr5_2:51290705-51290724 None:intergenic 30.0%
AACAGTTTAAACAATGGTTG+AGG - chr5_2:51290834-51290853 Msa0774750:intron 30.0%
GTTCTATGAATCTCAGAATT+TGG + chr5_2:51291013-51291032 None:intergenic 30.0%
AAAGCTAAGAAATGTGTGTA+TGG - chr5_2:51291300-51291319 Msa0774750:intron 30.0%
! TGGTCATGATATTTGATGAT+TGG - chr5_2:51291362-51291381 Msa0774750:intron 30.0%
! GCACTGATGAAAAATGTTAA+TGG + chr5_2:51291763-51291782 None:intergenic 30.0%
CCCATTCACAATATATAATG+TGG + chr5_2:51291811-51291830 None:intergenic 30.0%
! ATTTTCTTGTTGCAGAACTT+GGG + chr5_2:51291865-51291884 None:intergenic 30.0%
! AATTTTCTTGTTGCAGAACT+TGG + chr5_2:51291866-51291885 None:intergenic 30.0%
ACGGGTATACAAATTTCATA+AGG + chr5_2:51292052-51292071 None:intergenic 30.0%
!!! AAGATTTTTCAAGCAAGAAG+CGG + chr5_2:51292154-51292173 None:intergenic 30.0%
TACTAAATTCCAAGGTTTGT+AGG + chr5_2:51292311-51292330 None:intergenic 30.0%
! GAGCTATAAACAGTTTTCAT+AGG - chr5_2:51292486-51292505 Msa0774750:intron 30.0%
! ACAGTTTTCATAGGCTATTT+TGG - chr5_2:51292495-51292514 Msa0774750:intron 30.0%
TTTGTCAACTCGATAAACAT+AGG + chr5_2:51292655-51292674 None:intergenic 30.0%
!!! AACACACATTTTAGGTTCTT+AGG - chr5_2:51292930-51292949 Msa0774750:intron 30.0%
TTACTTATAATAGTGACCAG+AGG - chr5_2:51292996-51293015 Msa0774750:intron 30.0%
TACTTATAATAGTGACCAGA+GGG - chr5_2:51292997-51293016 Msa0774750:intron 30.0%
GGGAAGGTTTGAATATATAT+AGG - chr5_2:51293442-51293461 Msa0774750:CDS 30.0%
!!! AAGATTTGTTGAGGTTTTGA+AGG - chr5_2:51293480-51293499 Msa0774750:intron 30.0%
!!! AGATTTGTTGAGGTTTTGAA+GGG - chr5_2:51293481-51293500 Msa0774750:intron 30.0%
!! TTTTGAAGGGTAACTGATTT+TGG - chr5_2:51293494-51293513 Msa0774750:intron 30.0%
GAGGACAGAAATAAAAACAT+TGG + chr5_2:51293655-51293674 None:intergenic 30.0%
AATTTACCTTTGCGAGTTTG+AGG + chr5_2:51289932-51289951 None:intergenic 35.0%
CTGCTTGGATAAACAGATTA+AGG - chr5_2:51290208-51290227 Msa0774750:intron 35.0%
! GGACTTAATTAGGGTCTTTT+TGG + chr5_2:51290434-51290453 None:intergenic 35.0%
CAGCCGATGAAAACAATTTA+TGG + chr5_2:51290545-51290564 None:intergenic 35.0%
AAGACACTAGCAAGAGTTTA+TGG - chr5_2:51290642-51290661 Msa0774750:intron 35.0%
!!! CTTTTTTGGGGCTTATCTTA+TGG - chr5_2:51290875-51290894 Msa0774750:intron 35.0%
! GTAACTTGTAAGCACTTGTA+CGG - chr5_2:51290902-51290921 Msa0774750:intron 35.0%
AGATTCATAGAACGAAGCTA+AGG - chr5_2:51291020-51291039 Msa0774750:intron 35.0%
GATTCATAGAACGAAGCTAA+GGG - chr5_2:51291021-51291040 Msa0774750:intron 35.0%
AATCAAGTGGTTGCCAAAAA+GGG + chr5_2:51291196-51291215 None:intergenic 35.0%
TAATCAAGTGGTTGCCAAAA+AGG + chr5_2:51291197-51291216 None:intergenic 35.0%
! AATGTGTGTATGGACTGTTA+CGG - chr5_2:51291310-51291329 Msa0774750:intron 35.0%
!! GCATTGATGAAAAGCGTTAT+TGG - chr5_2:51291565-51291584 Msa0774750:intron 35.0%
AGCAAAACAATACTGAGAAG+TGG + chr5_2:51291647-51291666 None:intergenic 35.0%
TAATGTGGTTGTGTAGAGAA+CGG + chr5_2:51291796-51291815 None:intergenic 35.0%
ATGTGTGTATGGACAATTAC+GGG + chr5_2:51292070-51292089 None:intergenic 35.0%
GATGTGTGTATGGACAATTA+CGG + chr5_2:51292071-51292090 None:intergenic 35.0%
TGAATCAAGTAGTTGCCAAA+AGG - chr5_2:51292175-51292194 Msa0774750:intron 35.0%
GAATCAAGTAGTTGCCAAAA+GGG - chr5_2:51292176-51292195 Msa0774750:intron 35.0%
! CCATGTGTTACTAAATTCCA+AGG + chr5_2:51292319-51292338 None:intergenic 35.0%
CCTTGGAATTTAGTAACACA+TGG - chr5_2:51292316-51292335 Msa0774750:intron 35.0%
! TGCTCGCAAGTATTTTCATT+CGG + chr5_2:51292533-51292552 None:intergenic 35.0%
GCTCATGAACAATTTACCTA+AGG + chr5_2:51290678-51290697 None:intergenic 35.0%
!! CAATGTTTTTGCAGCTTATG+AGG - chr5_2:51292810-51292829 Msa0774750:intron 35.0%
!!! CTTTTTTTGGGCCTATCTTA+TGG - chr5_2:51292877-51292896 Msa0774750:intron 35.0%
! GTTTTGCTAATCATAGTGAC+CGG + chr5_2:51292913-51292932 None:intergenic 35.0%
GGTTCAATTTCTGTTAAACC+AGG - chr5_2:51293283-51293302 Msa0774750:intron 35.0%
TCAATTTCTGTTAAACCAGG+AGG - chr5_2:51293286-51293305 Msa0774750:intron 35.0%
! CTGCTTTAACTTCATTGCAA+TGG + chr5_2:51293328-51293347 None:intergenic 35.0%
AGTTATGAAAAAAGGAGGGA+AGG - chr5_2:51293426-51293445 Msa0774750:intron 35.0%
!! TGGGATATGAAGATTTGTTG+AGG - chr5_2:51293471-51293490 Msa0774750:intron 35.0%
GTTTACGGTTACACATTTGT+AGG - chr5_2:51293544-51293563 Msa0774750:intron 35.0%
! AAAGTACCTCAAACTCGCAA+AGG - chr5_2:51289923-51289942 Msa0774750:three_prime_UTR 40.0%
GAAGCCAACGAAAGTTACAA+AGG - chr5_2:51290042-51290061 Msa0774750:three_prime_UTR 40.0%
AAACAGATTAAGGCTCCGTT+TGG - chr5_2:51290218-51290237 Msa0774750:intron 40.0%
ACAAGCTTCTGCATTTGGAT+CGG + chr5_2:51290700-51290719 None:intergenic 40.0%
GGAAGCCATTAACACTACAA+CGG - chr5_2:51290926-51290945 Msa0774750:intron 40.0%
GAAGCCATTAACACTACAAC+GGG - chr5_2:51290927-51290946 Msa0774750:intron 40.0%
!! GAAGCTAAGGGTTGATTTTG+AGG - chr5_2:51291033-51291052 Msa0774750:intron 40.0%
ATATCTGCAGAAGAAGACTG+AGG - chr5_2:51291109-51291128 Msa0774750:intron 40.0%
TATCTGCAGAAGAAGACTGA+GGG - chr5_2:51291110-51291129 Msa0774750:intron 40.0%
AGGATCAGTTGAACATCTGT+CGG + chr5_2:51291140-51291159 None:intergenic 40.0%
AGATGTTCAACTGATCCTCT+CGG - chr5_2:51291142-51291161 Msa0774750:intron 40.0%
! TACACAATACGCACCCTTTT+TGG - chr5_2:51291180-51291199 Msa0774750:intron 40.0%
AAGCAAGGAGAATTGTCACA+TGG - chr5_2:51291228-51291247 Msa0774750:intron 40.0%
AGCAAGGAGAATTGTCACAT+GGG - chr5_2:51291229-51291248 Msa0774750:intron 40.0%
ATTGTCACATGGGAGTAGAT+AGG - chr5_2:51291239-51291258 Msa0774750:intron 40.0%
! ATGTGTGTATGGACTGTTAC+GGG - chr5_2:51291311-51291330 Msa0774750:intron 40.0%
TTGGGTTATGCTGAACATGT+TGG + chr5_2:51291847-51291866 None:intergenic 40.0%
AAGGCTGATAGATGTGTGTA+TGG + chr5_2:51292081-51292100 None:intergenic 40.0%
AACGATTCTTCACGACTGAT+AGG - chr5_2:51292218-51292237 Msa0774750:intron 40.0%
TGGTTACAATGGCTATGGAT+CGG + chr5_2:51292258-51292277 None:intergenic 40.0%
TATGATTACCACTCCTACGA+TGG + chr5_2:51292405-51292424 None:intergenic 40.0%
TCAACTCGATAAACATAGGC+TGG + chr5_2:51292651-51292670 None:intergenic 40.0%
GAGGATGTATGCCATAAGAT+AGG + chr5_2:51292891-51292910 None:intergenic 40.0%
ATCTTATGGCATACATCCTC+CGG - chr5_2:51292891-51292910 Msa0774750:intron 40.0%
!! GAAGGGTAACTGATTTTGGT+AGG - chr5_2:51293498-51293517 Msa0774750:intron 40.0%
!! GGTAACTGATTTTGGTAGGT+TGG - chr5_2:51293502-51293521 Msa0774750:intron 40.0%
!!! ACTGATTTTGGTAGGTTGGT+TGG - chr5_2:51293506-51293525 Msa0774750:intron 40.0%
!!! CTGATTTTGGTAGGTTGGTT+GGG - chr5_2:51293507-51293526 Msa0774750:intron 40.0%
! GACTTGGGAGAGTTTGTTTA+CGG - chr5_2:51293529-51293548 Msa0774750:intron 40.0%
TCGATTCCTGCTAATCGTCA+TGG - chr5_2:51289899-51289918 Msa0774750:three_prime_UTR 45.0%
ACTTTGCCATGACGATTAGC+AGG + chr5_2:51289908-51289927 None:intergenic 45.0%
ACTTGTAAGCACTTGTACGG+TGG - chr5_2:51290905-51290924 Msa0774750:intron 45.0%
TCCTCCCGTTGTAGTGTTAA+TGG + chr5_2:51290934-51290953 None:intergenic 45.0%
TTAAACCAACCCTCTATGCC+TGG + chr5_2:51291062-51291081 None:intergenic 45.0%
!! GGCATAGAGGGTTGGTTTAA+TGG - chr5_2:51291062-51291081 Msa0774750:intron 45.0%
!! GAGGGTTGGTTTAATGGCAT+TGG - chr5_2:51291068-51291087 Msa0774750:intron 45.0%
GGATCAGTTGAACATCTGTC+GGG + chr5_2:51291139-51291158 None:intergenic 45.0%
! AATGATTTTTCACGGCCGAG+AGG + chr5_2:51291160-51291179 None:intergenic 45.0%
AGGTTTGTAGGACTGCTTCT+AGG + chr5_2:51292299-51292318 None:intergenic 45.0%
AGAAGCAGTCCTACAAACCT+TGG - chr5_2:51292299-51292318 Msa0774750:intron 45.0%
! TGGAAGACATTGACTGCGAT+GGG + chr5_2:51292385-51292404 None:intergenic 45.0%
! ATGGAAGACATTGACTGCGA+TGG + chr5_2:51292386-51292405 None:intergenic 45.0%
CAGTCAATGTCTTCCATCGT+AGG - chr5_2:51292389-51292408 Msa0774750:intron 45.0%
AATGTCTTCCATCGTAGGAG+TGG - chr5_2:51292394-51292413 Msa0774750:intron 45.0%
TTGCTAATCATAGTGACCGG+AGG + chr5_2:51292910-51292929 None:intergenic 45.0%
! TGATGAATTTGCTCACCTCC+TGG + chr5_2:51293304-51293323 None:intergenic 45.0%
!!! TGATTTTAATTTTTTATATT+TGG - chr5_2:51293261-51293280 Msa0774750:intron 5.0%
!!! GATTTTAATTTTTTATATTT+GGG - chr5_2:51293262-51293281 Msa0774750:intron 5.0%
GCCATTAACACTACAACGGG+AGG - chr5_2:51290930-51290949 Msa0774750:intron 50.0%
!! GGGTTGATTTTGAGGACACC+AGG - chr5_2:51291041-51291060 Msa0774750:intron 50.0%
TTTGAGGACACCAGGCATAG+AGG - chr5_2:51291049-51291068 Msa0774750:intron 50.0%
TTGAGGACACCAGGCATAGA+GGG - chr5_2:51291050-51291069 Msa0774750:intron 50.0%
! GAGCTGATGACACACCCTTT+TGG + chr5_2:51292193-51292212 None:intergenic 50.0%
ACAATGGCTATGGATCGGTG+TGG + chr5_2:51292253-51292272 None:intergenic 50.0%
AGGGGTGGTTACAATGGCTA+TGG + chr5_2:51292263-51292282 None:intergenic 50.0%
ACATAGGCTGGCATTAGCGT+TGG + chr5_2:51292639-51292658 None:intergenic 50.0%
TGCTTAGAAGTGACACCCTC+TGG + chr5_2:51293015-51293034 None:intergenic 50.0%
AGCAGCGACTGTAGCTACAA+AGG - chr5_2:51293343-51293362 Msa0774750:intron 50.0%
GCGACTGTAGCTACAAAGGA+CGG - chr5_2:51293347-51293366 Msa0774750:intron 50.0%
ACTGTAGCTACAAAGGACGG+TGG - chr5_2:51293350-51293369 Msa0774750:intron 50.0%
!! TTGGTAGGTTGGTTGGGACT+TGG - chr5_2:51293513-51293532 Msa0774750:intron 50.0%
!! TGGTAGGTTGGTTGGGACTT+GGG - chr5_2:51293514-51293533 Msa0774750:intron 50.0%
!! AGCAAGAAGCGGTGTCACGT+GGG + chr5_2:51292143-51292162 None:intergenic 55.0%
!! AAGCAAGAAGCGGTGTCACG+TGG + chr5_2:51292144-51292163 None:intergenic 55.0%
GCACAGAGGGGTGGTTACAA+TGG + chr5_2:51292269-51292288 None:intergenic 55.0%
TGTAACCACCCCTCTGTGCA+CGG - chr5_2:51292270-51292289 Msa0774750:intron 55.0%
! TCTAGGACACCGTGCACAGA+GGG + chr5_2:51292282-51292301 None:intergenic 55.0%
!! TTCTAGGACACCGTGCACAG+AGG + chr5_2:51292283-51292302 None:intergenic 55.0%
ACAGCACCAGAGTCTGCAAG+TGG - chr5_2:51293392-51293411 Msa0774750:intron 55.0%
TCTGCACCACTTGCAGACTC+TGG + chr5_2:51293401-51293420 None:intergenic 55.0%
GGACACCAGGCATAGAGGGT+TGG - chr5_2:51291054-51291073 Msa0774750:intron 60.0%
!! CGGTGTCACGTGGGAGTAGA+TGG + chr5_2:51292134-51292153 None:intergenic 60.0%
CTAGGACACCGTGCACAGAG+GGG + chr5_2:51292281-51292300 None:intergenic 60.0%
GGACACCGTGCACAGAGGGG+TGG + chr5_2:51292278-51292297 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 51289751 51293761 51289751 ID=Msa0774750;Name=Msa0774750
chr5_2 mRNA 51289751 51293761 51289751 ID=Msa0774750-mRNA-1;Parent=Msa0774750;Name=Msa0774750-mRNA-1;_AED=0.24;_eAED=0.33;_QI=103|0.25|0.6|1|1|1|5|334|119
chr5_2 exon 51289751 51290207 51289751 ID=Msa0774750-mRNA-1:exon:15284;Parent=Msa0774750-mRNA-1
chr5_2 exon 51292180 51292224 51292180 ID=Msa0774750-mRNA-1:exon:15283;Parent=Msa0774750-mRNA-1
chr5_2 exon 51292346 51292393 51292346 ID=Msa0774750-mRNA-1:exon:15282;Parent=Msa0774750-mRNA-1
chr5_2 exon 51293431 51293483 51293431 ID=Msa0774750-mRNA-1:exon:15281;Parent=Msa0774750-mRNA-1
chr5_2 exon 51293568 51293761 51293568 ID=Msa0774750-mRNA-1:exon:15280;Parent=Msa0774750-mRNA-1
chr5_2 five_prime_UTR 51293659 51293761 51293659 ID=Msa0774750-mRNA-1:five_prime_utr;Parent=Msa0774750-mRNA-1
chr5_2 CDS 51293568 51293658 51293568 ID=Msa0774750-mRNA-1:cds;Parent=Msa0774750-mRNA-1
chr5_2 CDS 51293431 51293483 51293431 ID=Msa0774750-mRNA-1:cds;Parent=Msa0774750-mRNA-1
chr5_2 CDS 51292346 51292393 51292346 ID=Msa0774750-mRNA-1:cds;Parent=Msa0774750-mRNA-1
chr5_2 CDS 51292180 51292224 51292180 ID=Msa0774750-mRNA-1:cds;Parent=Msa0774750-mRNA-1
chr5_2 CDS 51290085 51290207 51290085 ID=Msa0774750-mRNA-1:cds;Parent=Msa0774750-mRNA-1
chr5_2 three_prime_UTR 51289751 51290084 51289751 ID=Msa0774750-mRNA-1:three_prime_utr;Parent=Msa0774750-mRNA-1
Gene Sequence

>Msa0774750

ATGACGCAGAAATCAAAACTTTTCAAGGGCCAAACTAAGAAGAAATCGATTCCTGCTAATCGTCATGGCAAAGTACCTCAAACTCGCAAAGGGAAGAGATTTGTGAAGCCAACGAAAGTTACAAAGGATATGGATGCTGATCGTAAGAAGACTGAGGGTAACCCGACAGATGTTCAACTGATCCTCTCGGCCAGTCAGAGATCAAAAGCTAAGAAATGTGTGTATGGACTGTTACGGGAGGTGAGCAAATTCATCAACCATTGCAATGAAGTTAAAGCAGCGACTGTAGCTACAAAGGACGGTGGTTATCTAAGCATTGTTAAGACAGCACCAGAGTCTGCAAGTGGTGCAGATAAATAG

Protein sequence

>Msa0774750

MTQKSKLFKGQTKKKSIPANRHGKVPQTRKGKRFVKPTKVTKDMDADRKKTEGNPTDVQLILSASQRSKAKKCVYGLLREVSKFINHCNEVKAATVATKDGGYLSIVKTAPESASGADK*