AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1240310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1240310 MtrunA17_Chr8g0352361 97.814 183 4 0 9 191 468 650 9.45e-119 367
Msa1240310 MtrunA17_Chr8g0352361 98.851 174 2 0 192 365 714 887 1.30e-117 364
Msa1240310 MtrunA17_Chr2g0296421 94.253 174 10 0 192 365 863 1036 1.80e-110 348
Msa1240310 MtrunA17_Chr2g0296421 83.060 183 31 0 9 191 618 800 1.95e-99 319
Msa1240310 MtrunA17_Chr7g0232971 34.454 357 171 13 36 330 897 1252 5.26e-40 153
Msa1240310 MtrunA17_Chr7g0233001 46.377 138 73 1 194 330 338 475 7.14e-29 118
Msa1240310 MtrunA17_Chr7g0233001 30.822 146 91 5 33 175 118 256 2.00e-12 68.9
Msa1240310 MtrunA17_Chr3g0114161 46.154 143 76 1 189 330 1061 1203 8.49e-29 119
Msa1240310 MtrunA17_Chr3g0114161 33.939 165 97 4 36 189 831 994 4.24e-15 77.8
Msa1240310 MtrunA17_Chr5g0437621 38.824 170 103 1 162 330 1090 1259 3.20e-28 118
Msa1240310 MtrunA17_Chr5g0437621 28.505 214 135 5 9 209 858 1066 2.25e-16 82.0
Msa1240310 MtrunA17_Chr4g0047081 46.377 138 73 1 194 330 1053 1190 3.78e-28 117
Msa1240310 MtrunA17_Chr4g0047081 31.973 147 88 4 33 175 833 971 1.16e-13 73.6
Msa1240310 MtrunA17_Chr7g0224051 43.357 143 80 1 189 330 930 1072 4.75e-28 117
Msa1240310 MtrunA17_Chr7g0224051 32.418 182 112 4 9 180 674 854 4.78e-17 84.0
Msa1240310 MtrunA17_Chr7g0225791 31.507 292 164 6 48 330 976 1240 7.37e-28 117
Msa1240310 MtrunA17_Chr7g0225791 34.667 150 90 4 33 180 883 1026 2.10e-16 82.0
Msa1240310 MtrunA17_Chr2g0320781 48.000 125 62 3 194 316 110 233 2.45e-27 109
Msa1240310 MtrunA17_Chr1g0191141 45.652 138 74 1 194 330 921 1058 1.96e-26 112
Msa1240310 MtrunA17_Chr1g0191141 29.744 195 126 5 9 193 660 853 7.97e-16 80.1
Msa1240310 MtrunA17_Chr7g0233031 44.604 139 73 3 194 330 1063 1199 3.45e-24 105
Msa1240310 MtrunA17_Chr7g0233031 32.653 147 80 6 35 178 853 983 1.28e-12 70.1
Msa1240310 MtrunA17_Chr7g0233021 45.324 139 71 4 194 330 1051 1186 3.76e-24 105
Msa1240310 MtrunA17_Chr7g0233021 36.242 149 85 5 31 175 828 970 7.45e-17 83.2
Msa1240310 MtrunA17_Chr7g0232991 40.580 138 80 2 194 330 478 614 7.46e-22 98.2
Msa1240310 MtrunA17_Chr7g0232991 40.625 64 38 0 33 96 262 325 9.12e-12 67.0
Msa1240310 MtrunA17_Chr4g0040301 33.939 165 93 5 193 348 396 553 3.22e-17 84.3
Msa1240310 MtrunA17_Chr4g0052341 25.189 397 213 14 42 380 881 1251 5.02e-17 84.0
Msa1240310 MtrunA17_Chr3g0137091 25.868 317 181 10 43 313 435 743 2.10e-16 82.0
Msa1240310 MtrunA17_Chr1g0190381 36.429 140 80 2 193 323 204 343 3.27e-15 77.8
Msa1240310 MtrunA17_Chr1g0183681 35.075 134 82 1 193 326 751 879 4.80e-14 74.7
Msa1240310 MtrunA17_Chr1g0175191 34.711 121 74 1 193 313 1078 1193 7.87e-14 73.9
Msa1240310 MtrunA17_Chr1g0163011 32.061 131 84 1 192 322 585 710 8.81e-14 73.6
Msa1240310 MtrunA17_Chr1g0168031 33.333 174 103 6 157 323 961 1128 9.10e-14 73.6
Msa1240310 MtrunA17_Chr2g0281601 36.364 121 72 2 193 313 1148 1263 1.42e-12 70.1
Msa1240310 MtrunA17_Chr7g0255821 37.705 122 69 3 195 314 668 784 5.36e-12 67.8
Msa1240310 MtrunA17_Chr5g0393461 29.787 141 93 2 189 328 551 686 7.55e-12 67.4
Msa1240310 MtrunA17_Chr8g0384531 33.607 122 76 1 193 314 756 872 1.05e-11 67.0
Msa1240310 MtrunA17_Chr1g0212331 32.773 119 75 2 195 313 887 1000 1.99e-11 66.2
Msa1240310 MtrunA17_Chr2g0286291 35.659 129 77 3 195 322 510 633 2.61e-11 65.9
Msa1240310 MtrunA17_Chr4g0066741 35.659 129 77 3 195 322 507 630 3.19e-11 65.5
Msa1240310 MtrunA17_Chr4g0024921 32.824 131 83 1 195 325 784 909 4.67e-11 65.1
Msa1240310 MtrunA17_Chr2g0320751 34.146 123 74 3 192 313 865 981 5.23e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1240310 AT2G16390.2 60.698 430 92 5 9 365 460 885 1.08e-170 501
Msa1240310 AT2G16390.1 60.698 430 92 5 9 365 457 882 1.25e-170 501
Msa1240310 AT2G21450.3 48.292 439 147 5 9 367 281 719 2.04e-131 395
Msa1240310 AT2G21450.1 48.292 439 147 5 9 367 372 810 3.43e-130 395
Msa1240310 AT2G21450.2 48.292 439 147 5 9 367 379 817 5.58e-130 394
Msa1240310 AT3G42670.2 29.208 404 207 8 5 330 808 1210 1.96e-40 154
Msa1240310 AT3G42670.3 29.208 404 207 8 5 330 808 1210 1.96e-40 154
Msa1240310 AT3G42670.1 29.208 404 207 8 5 330 808 1210 1.96e-40 154
Msa1240310 AT3G42670.4 29.208 404 207 8 5 330 810 1212 2.00e-40 154
Msa1240310 AT3G32330.1 41.398 186 104 2 9 189 100 285 1.22e-37 139
Msa1240310 AT1G05490.1 46.377 138 73 1 194 330 1216 1353 7.27e-29 120
Msa1240310 AT1G05490.1 33.566 143 80 3 33 174 998 1126 2.90e-13 72.8
Msa1240310 AT3G24340.1 40.972 144 65 2 194 336 944 1068 7.50e-25 108
Msa1240310 AT3G24340.1 30.337 178 105 4 5 181 707 866 3.20e-14 75.5
Msa1240310 AT5G20420.1 36.994 173 100 5 194 364 1079 1244 8.87e-24 105
Msa1240310 AT5G20420.1 29.524 210 133 5 9 204 818 1026 3.60e-15 78.6
Msa1240310 AT3G32280.1 44.318 88 49 0 9 96 387 474 2.06e-18 87.8
Msa1240310 AT3G31900.1 45.882 85 46 0 14 98 286 370 2.88e-18 86.7
Msa1240310 AT1G03750.1 32.487 197 112 5 123 313 478 659 1.48e-17 85.9
Msa1240310 AT4G31900.2 26.603 312 180 10 43 313 312 615 1.24e-15 80.1
Msa1240310 AT4G31900.3 26.603 312 180 10 43 313 353 656 1.35e-15 79.7
Msa1240310 AT4G31900.1 26.603 312 180 10 43 313 353 656 1.35e-15 79.7
Msa1240310 AT5G43530.1 36.429 140 84 2 184 323 1118 1252 1.89e-15 79.3
Msa1240310 AT1G08600.1 37.143 140 79 2 193 323 1110 1249 2.58e-15 79.0
Msa1240310 AT1G08600.4 37.143 140 79 2 193 323 1131 1270 2.70e-15 79.0
Msa1240310 AT1G08600.3 37.143 140 79 2 193 323 1131 1270 2.70e-15 79.0
Msa1240310 AT1G08600.2 37.143 140 79 2 193 323 1131 1270 2.70e-15 79.0
Msa1240310 AT2G18760.3 37.313 134 79 2 193 326 802 930 3.35e-14 75.5
Msa1240310 AT3G12810.1 31.034 145 95 1 191 335 1089 1228 4.01e-14 75.5
Msa1240310 AT2G18760.4 37.313 134 79 2 193 326 743 871 4.05e-14 75.1
Msa1240310 AT2G18760.1 37.313 134 79 2 193 326 743 871 4.05e-14 75.1
Msa1240310 AT2G18760.2 37.313 134 79 2 193 326 743 871 4.05e-14 75.1
Msa1240310 AT2G18760.7 37.313 134 79 2 193 326 743 871 4.05e-14 75.1
Msa1240310 AT2G18760.5 37.313 134 79 2 193 326 743 871 4.05e-14 75.1
Msa1240310 AT2G18760.6 37.313 134 79 2 193 326 743 871 4.05e-14 75.1
Msa1240310 AT3G12810.2 31.034 145 95 1 191 335 1085 1224 4.42e-14 75.1
Msa1240310 AT2G02090.1 29.252 147 99 1 192 338 603 744 3.06e-13 72.4
Msa1240310 AT1G11100.5 34.426 122 75 2 192 313 927 1043 1.49e-12 70.5
Msa1240310 AT1G11100.3 34.426 122 75 2 192 313 971 1087 1.85e-12 70.1
Msa1240310 AT1G11100.1 34.426 122 75 2 192 313 1070 1186 1.96e-12 70.1
Msa1240310 AT5G44800.1 32.450 151 95 3 193 342 1020 1164 2.21e-12 70.1
Msa1240310 AT1G11100.2 34.426 122 75 2 192 313 1113 1229 2.30e-12 69.7
Msa1240310 AT1G61140.3 34.426 122 75 1 192 313 964 1080 2.45e-12 69.7
Msa1240310 AT1G11100.4 34.426 122 75 2 192 313 1114 1230 2.51e-12 69.7
Msa1240310 AT1G61140.1 34.426 122 75 1 192 313 1122 1238 2.92e-12 69.3
Msa1240310 AT5G63950.1 34.426 122 75 2 193 314 748 864 3.61e-12 68.9
Msa1240310 AT5G63950.2 34.426 122 75 2 193 314 731 847 3.82e-12 68.9
Msa1240310 AT5G05130.1 33.987 153 92 4 195 344 727 873 8.60e-12 67.8
Msa1240310 AT3G06400.2 35.659 129 77 3 195 322 508 631 1.22e-11 67.4
Msa1240310 AT3G06400.1 35.659 129 77 3 195 322 508 631 1.24e-11 67.4
Msa1240310 AT3G06400.3 35.659 129 77 3 195 322 508 631 1.25e-11 67.4
Msa1240310 AT3G20010.3 33.065 124 68 2 195 313 628 741 1.36e-11 67.0
Msa1240310 AT3G20010.2 33.065 124 68 2 195 313 603 716 1.45e-11 67.0
Msa1240310 AT5G18620.2 34.884 129 78 3 195 322 513 636 1.56e-11 67.0
Msa1240310 AT5G18620.1 34.884 129 78 3 195 322 513 636 1.57e-11 67.0
Msa1240310 AT1G05120.2 32.836 134 79 2 195 325 725 850 4.06e-11 65.9
Msa1240310 AT1G05120.1 32.836 134 79 2 195 325 682 807 4.09e-11 65.5
Msa1240310 AT3G20010.1 33.065 124 68 2 195 313 894 1007 4.23e-11 65.9
Msa1240310 AT3G20010.5 33.065 124 68 2 195 313 894 1007 4.23e-11 65.9
Msa1240310 AT3G20010.7 33.065 124 68 2 195 313 894 1007 4.23e-11 65.9
Msa1240310 AT3G19210.3 27.536 138 94 2 192 328 550 682 7.11e-11 64.7
Msa1240310 AT3G19210.2 27.536 138 94 2 192 328 548 680 7.67e-11 64.7
Msa1240310 AT3G19210.1 27.536 138 94 2 192 328 550 682 7.88e-11 64.7

Find 80 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATTGCCTTTGAAATATT+TGG 0.058372 8_2:-22749312 Msa1240310:CDS
AAAGAAATCTTCGTGATTTC+AGG 0.179731 8_2:-22749251 Msa1240310:CDS
AATAGAGATGGGATATTTAA+AGG 0.265252 8_2:-22748677 Msa1240310:intron
CGTGAAACGCTTTGACGATT+TGG 0.276231 8_2:-22750473 Msa1240310:CDS
GTATGGTGATCTTCCTCTTC+TGG 0.293249 8_2:+22748987 None:intergenic
GTGAAGGGATTTCATTGGTT+GGG 0.299232 8_2:-22749136 Msa1240310:CDS
GTAGTAGTGAAGAACTTTAC+TGG 0.300350 8_2:+22750378 None:intergenic
CTCAACTTCAATCTTCTGCC+TGG 0.320090 8_2:+22750291 None:intergenic
ACTCCTTCTTGAAACAAGTA+TGG 0.324325 8_2:+22748970 None:intergenic
CTCTTTATCAAAATCATGTT+AGG 0.326043 8_2:-22750597 Msa1240310:CDS
TTCTGGTAGTTGTCTACTAA+TGG 0.343834 8_2:-22748597 Msa1240310:CDS
GGTTCTTATATATCCTGTTC+TGG 0.379185 8_2:-22748614 Msa1240310:CDS
ACTCCAACCCTTCCACTTCA+TGG 0.391297 8_2:+22749280 None:intergenic
AGCGTTTCACGCTAGGTATA+TGG 0.400878 8_2:+22750485 None:intergenic
ATTTCTCGAGAGCCCGTTGT+TGG 0.403893 8_2:-22748856 Msa1240310:CDS
TTTCTCGAGAGCCCGTTGTT+GGG 0.409918 8_2:-22748855 Msa1240310:CDS
CTACCAGAATGTTACTCAAC+AGG 0.431491 8_2:-22748554 Msa1240310:CDS
TCTGTTACTCGTCAAGCTAT+TGG 0.444358 8_2:-22749074 Msa1240310:CDS
GGCATCCCGTGTCATCATCT+TGG 0.446746 8_2:-22749114 Msa1240310:CDS
TCTTGACGAGCTTCCTGGCC+TGG 0.451010 8_2:-22750344 Msa1240310:CDS
TGAAGGGATTTCATTGGTTG+GGG 0.452191 8_2:-22749135 Msa1240310:CDS
CCTAGGAAAGTTGTATTGTC+TGG 0.452995 8_2:-22750622 Msa1240310:CDS
TAGTAGACAACTACCAGAAC+AGG 0.453680 8_2:+22748601 None:intergenic
CCAGACAATACAACTTTCCT+AGG 0.454063 8_2:+22750622 None:intergenic
AATCCTGTTGAGTAACATTC+TGG 0.455002 8_2:+22748551 None:intergenic
TTCTCGAGAGCCCGTTGTTG+GGG 0.456331 8_2:-22748854 Msa1240310:CDS
TCGTCAAAGCGTTTCACGCT+AGG 0.459802 8_2:+22750478 None:intergenic
GAACTTTAAGCAATATCTCT+TGG 0.466423 8_2:+22750728 None:intergenic
AAGTGGAAGGGTTGGAGTCT+CGG 0.479399 8_2:-22749275 Msa1240310:CDS
AAGAACTGAGAATACAGATA+TGG 0.482932 8_2:-22750671 Msa1240310:CDS
TCGTCCGACGCATTCAGGCT+AGG 0.486785 8_2:-22750510 Msa1240310:CDS
AACCTTTCCAAATATTTCAA+AGG 0.488803 8_2:+22749305 None:intergenic
GGTGAAGGGATTTCATTGGT+TGG 0.488938 8_2:-22749137 Msa1240310:CDS
TCAACTTCAATCTTCTGCCT+GGG 0.491267 8_2:+22750292 None:intergenic
TGCCTTTGAAATATTTGGAA+AGG 0.491523 8_2:-22749307 Msa1240310:CDS
TCAATCAAAGCATGTGGTGA+AGG 0.516797 8_2:-22749152 Msa1240310:CDS
AATTCAATATCAAATAGAGA+TGG 0.527984 8_2:-22748689 Msa1240310:CDS
TCACCATACTTGTTTCAAGA+AGG 0.531321 8_2:-22748973 Msa1240310:CDS
CTGTTGAGTAACATTCTGGT+AGG 0.535276 8_2:+22748555 None:intergenic
ATGTGGTGAAGGGATTTCAT+TGG 0.540076 8_2:-22749141 Msa1240310:CDS
TCTTTATCAAAATCATGTTA+GGG 0.540566 8_2:-22750596 Msa1240310:CDS
AAAGTTCTTCACTACTACAA+AGG 0.544153 8_2:-22750373 Msa1240310:CDS
TCCGATTGCAAAATAAACAT+AGG 0.546846 8_2:+22750826 None:intergenic
ATTCAATATCAAATAGAGAT+GGG 0.547707 8_2:-22748688 Msa1240310:CDS
TCAATGTTCTTAATCTTGTG+AGG 0.550018 8_2:-22750567 Msa1240310:CDS
TGTATTTGTCAGGTAACATG+TGG 0.553073 8_2:-22748728 Msa1240310:intron
TAGCCATGAAGTGGAAGGGT+TGG 0.555020 8_2:-22749283 Msa1240310:CDS
ACAGTGAAATCTACCAGGCC+AGG 0.556543 8_2:+22750331 None:intergenic
AGCTGCTGATTCTCCAGAAG+AGG 0.560162 8_2:-22749000 Msa1240310:CDS
TGGAAAGGTTAGCCATGAAG+TGG 0.563673 8_2:-22749292 Msa1240310:CDS
AGGTGTTTGTACTTTAACAA+GGG 0.566899 8_2:+22750642 None:intergenic
GGTTGAGAATACATTACAGA+AGG 0.577283 8_2:-22750452 Msa1240310:CDS
AAGGTTAGCCATGAAGTGGA+AGG 0.584042 8_2:-22749288 Msa1240310:CDS
CAATCAAAGCATGTGGTGAA+GGG 0.586332 8_2:-22749151 Msa1240310:CDS
TCATCTAAAATGAGAATCGA+GGG 0.587070 8_2:+22750706 None:intergenic
CTCATCTAAAATGAGAATCG+AGG 0.592838 8_2:+22750705 None:intergenic
GTAGGGTAAACTGCACGGCT+CGG 0.592973 8_2:+22748573 None:intergenic
TGAAAACTCTCTTTGTTCAG+CGG 0.593795 8_2:+22749220 None:intergenic
TAGGTGTTTGTACTTTAACA+AGG 0.597170 8_2:+22750641 None:intergenic
TGGTGCTCAAACTTACGCCC+AGG 0.602478 8_2:-22750309 Msa1240310:CDS
TGTTGAGTAACATTCTGGTA+GGG 0.608913 8_2:+22748556 None:intergenic
TCTCGAGAGCCCGTTGTTGG+GGG 0.610035 8_2:-22748853 Msa1240310:CDS
TTATCAAAATCATGTTAGGG+AGG 0.612213 8_2:-22750593 Msa1240310:CDS
TTTGGCTCAATCAAAGCATG+TGG 0.612350 8_2:-22749158 Msa1240310:CDS
ATTACTATTATCACACACAA+TGG 0.613137 8_2:+22750771 None:intergenic
TTCTGGTAGGGTAAACTGCA+CGG 0.613500 8_2:+22748568 None:intergenic
ATAGCTTGACGAGTAACAGA+TGG 0.614442 8_2:+22749077 None:intergenic
TTTGAATGGAATGAATATTG+TGG 0.623573 8_2:-22748930 Msa1240310:CDS
GAACATCCAAGATGATGACA+CGG 0.628032 8_2:+22749108 None:intergenic
GTGTTTCAACTTCAAATGCG+CGG 0.628851 8_2:+22748904 None:intergenic
TAGCTTGACGAGTAACAGAT+GGG 0.629929 8_2:+22749078 None:intergenic
GCACCACAGTGAAATCTACC+AGG 0.638762 8_2:+22750326 None:intergenic
AGGTTAGCCATGAAGTGGAA+GGG 0.648273 8_2:-22749287 Msa1240310:CDS
GTATTTGTCAGGTAACATGT+GGG 0.658755 8_2:-22748727 Msa1240310:intron
GGACCCTAGCCTGAATGCGT+CGG 0.659146 8_2:+22750506 None:intergenic
ACACTTGATGTGAAAGAATG+TGG 0.659776 8_2:-22748885 Msa1240310:CDS
AACATCCAAGATGATGACAC+GGG 0.663891 8_2:+22749109 None:intergenic
TTGTTAAAGTACAAACACCT+AGG 0.673848 8_2:-22750639 Msa1240310:CDS
GAAGTTTAACAATTCACCCG+AGG 0.674213 8_2:-22749192 Msa1240310:CDS
TGGCCTGGTAGATTTCACTG+TGG 0.783766 8_2:-22750329 Msa1240310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATTACTTTTTAAGAT+GGG + chr8_2:22749222-22749241 None:intergenic 10.0%
!!! AAAATTATTACTTTTTAAGA+TGG + chr8_2:22749223-22749242 None:intergenic 10.0%
!! TTTAAACTACATAATATATA+AGG + chr8_2:22749747-22749766 None:intergenic 10.0%
!!! TATATTTTAGTTTATTTTGA+TGG - chr8_2:22749826-22749845 Msa1240310:intron 10.0%
!!! AAATTATTACTTTTTAAGAT+GGG + chr8_2:22749222-22749241 None:intergenic 10.0%
!!! AAAATTATTACTTTTTAAGA+TGG + chr8_2:22749223-22749242 None:intergenic 10.0%
!! TTTAAACTACATAATATATA+AGG + chr8_2:22749747-22749766 None:intergenic 10.0%
!!! TATATTTTAGTTTATTTTGA+TGG - chr8_2:22749826-22749845 Msa1240310:intron 10.0%
!!! AATTATTACTTTTTAAGATG+GGG + chr8_2:22749221-22749240 None:intergenic 15.0%
!! AATGGTAGTAAAAAAAATTA+TGG + chr8_2:22749265-22749284 None:intergenic 15.0%
!!! AATTTTAAATGATCGATTTT+TGG - chr8_2:22749765-22749784 Msa1240310:intron 15.0%
!! ATACAAATAAAACAAGAATT+AGG + chr8_2:22750579-22750598 None:intergenic 15.0%
!!! AATTATTACTTTTTAAGATG+GGG + chr8_2:22749221-22749240 None:intergenic 15.0%
!! AATGGTAGTAAAAAAAATTA+TGG + chr8_2:22749265-22749284 None:intergenic 15.0%
!!! AATTTTAAATGATCGATTTT+TGG - chr8_2:22749765-22749784 Msa1240310:intron 15.0%
!! ATACAAATAAAACAAGAATT+AGG + chr8_2:22750579-22750598 None:intergenic 15.0%
!! TCTTTATCAAAATCATGTTA+GGG - chr8_2:22748726-22748745 Msa1240310:intron 20.0%
!!! ATCAATCAAGAAGTATTTTT+TGG + chr8_2:22749571-22749590 None:intergenic 20.0%
!!! CATGTTAGTTTAAATTGAAA+GGG - chr8_2:22749633-22749652 Msa1240310:intron 20.0%
!! GAAATCATCAATAATTGATT+CGG + chr8_2:22749676-22749695 None:intergenic 20.0%
!!! ATTTTAGTTTATTTTGATGG+CGG - chr8_2:22749829-22749848 Msa1240310:intron 20.0%
!!! TTGTTTTATTTGTATTTGTC+AGG - chr8_2:22750584-22750603 Msa1240310:CDS 20.0%
!! AATTCAATATCAAATAGAGA+TGG - chr8_2:22750633-22750652 Msa1240310:CDS 20.0%
!! ATTCAATATCAAATAGAGAT+GGG - chr8_2:22750634-22750653 Msa1240310:CDS 20.0%
!! TCTTTATCAAAATCATGTTA+GGG - chr8_2:22748726-22748745 Msa1240310:intron 20.0%
!!! ATCAATCAAGAAGTATTTTT+TGG + chr8_2:22749571-22749590 None:intergenic 20.0%
!!! CATGTTAGTTTAAATTGAAA+GGG - chr8_2:22749633-22749652 Msa1240310:intron 20.0%
!! GAAATCATCAATAATTGATT+CGG + chr8_2:22749676-22749695 None:intergenic 20.0%
!!! ATTTTAGTTTATTTTGATGG+CGG - chr8_2:22749829-22749848 Msa1240310:intron 20.0%
!!! TTGTTTTATTTGTATTTGTC+AGG - chr8_2:22750584-22750603 Msa1240310:CDS 20.0%
!! AATTCAATATCAAATAGAGA+TGG - chr8_2:22750633-22750652 Msa1240310:CDS 20.0%
!! ATTCAATATCAAATAGAGAT+GGG - chr8_2:22750634-22750653 Msa1240310:CDS 20.0%
! ATTACTATTATCACACACAA+TGG + chr8_2:22748554-22748573 None:intergenic 25.0%
! CTCTTTATCAAAATCATGTT+AGG - chr8_2:22748725-22748744 Msa1240310:intron 25.0%
!! GTTTCCATCTTTAAAAACTT+CGG + chr8_2:22748781-22748800 None:intergenic 25.0%
!!! CAACTTTCCTTTTAAAATCT+GGG + chr8_2:22748897-22748916 None:intergenic 25.0%
!! AAGTTCAAATTTTCTTCTGT+AGG - chr8_2:22749078-22749097 Msa1240310:CDS 25.0%
! AAAACTTTATATCTATCCTG+AGG + chr8_2:22749366-22749385 None:intergenic 25.0%
! TGTTGAAAAATATTATCCCA+TGG - chr8_2:22749410-22749429 Msa1240310:intron 25.0%
!! AGGAAATATCTAAGATGAAA+TGG + chr8_2:22749465-22749484 None:intergenic 25.0%
! TAAAAAGTTATGCTCATGTT+TGG - chr8_2:22749530-22749549 Msa1240310:intron 25.0%
!!! GTATTTTTTGGTTTGTCAAT+TGG + chr8_2:22749559-22749578 None:intergenic 25.0%
!! GCATGTTAGTTTAAATTGAA+AGG - chr8_2:22749632-22749651 Msa1240310:intron 25.0%
! CAATCATTAGATACTTAAAG+TGG + chr8_2:22749723-22749742 None:intergenic 25.0%
!!! TCTATTGCCTTTGAAATATT+TGG - chr8_2:22750010-22750029 Msa1240310:intron 25.0%
! AACCTTTCCAAATATTTCAA+AGG + chr8_2:22750020-22750039 None:intergenic 25.0%
! TTTGAATGGAATGAATATTG+TGG - chr8_2:22750392-22750411 Msa1240310:CDS 25.0%
!! TTTTCGTATGATATGCAAAA+AGG + chr8_2:22750539-22750558 None:intergenic 25.0%
! AATAGAGATGGGATATTTAA+AGG - chr8_2:22750645-22750664 Msa1240310:CDS 25.0%
!!! TGATTACTTTTTCTTTGTCT+AGG - chr8_2:22750793-22750812 Msa1240310:CDS 25.0%
! ATTACTATTATCACACACAA+TGG + chr8_2:22748554-22748573 None:intergenic 25.0%
! CTCTTTATCAAAATCATGTT+AGG - chr8_2:22748725-22748744 Msa1240310:intron 25.0%
!! GTTTCCATCTTTAAAAACTT+CGG + chr8_2:22748781-22748800 None:intergenic 25.0%
!!! CAACTTTCCTTTTAAAATCT+GGG + chr8_2:22748897-22748916 None:intergenic 25.0%
!! AAGTTCAAATTTTCTTCTGT+AGG - chr8_2:22749078-22749097 Msa1240310:CDS 25.0%
! AAAACTTTATATCTATCCTG+AGG + chr8_2:22749366-22749385 None:intergenic 25.0%
! TGTTGAAAAATATTATCCCA+TGG - chr8_2:22749410-22749429 Msa1240310:intron 25.0%
!! AGGAAATATCTAAGATGAAA+TGG + chr8_2:22749465-22749484 None:intergenic 25.0%
! TAAAAAGTTATGCTCATGTT+TGG - chr8_2:22749530-22749549 Msa1240310:intron 25.0%
!!! GTATTTTTTGGTTTGTCAAT+TGG + chr8_2:22749559-22749578 None:intergenic 25.0%
!! GCATGTTAGTTTAAATTGAA+AGG - chr8_2:22749632-22749651 Msa1240310:intron 25.0%
! CAATCATTAGATACTTAAAG+TGG + chr8_2:22749723-22749742 None:intergenic 25.0%
!!! TCTATTGCCTTTGAAATATT+TGG - chr8_2:22750010-22750029 Msa1240310:intron 25.0%
! AACCTTTCCAAATATTTCAA+AGG + chr8_2:22750020-22750039 None:intergenic 25.0%
! TTTGAATGGAATGAATATTG+TGG - chr8_2:22750392-22750411 Msa1240310:CDS 25.0%
!! TTTTCGTATGATATGCAAAA+AGG + chr8_2:22750539-22750558 None:intergenic 25.0%
! AATAGAGATGGGATATTTAA+AGG - chr8_2:22750645-22750664 Msa1240310:CDS 25.0%
!!! TGATTACTTTTTCTTTGTCT+AGG - chr8_2:22750793-22750812 Msa1240310:CDS 25.0%
GAACTTTAAGCAATATCTCT+TGG + chr8_2:22748597-22748616 None:intergenic 30.0%
! TCATCTAAAATGAGAATCGA+GGG + chr8_2:22748619-22748638 None:intergenic 30.0%
! TCGATTCTCATTTTAGATGA+GGG - chr8_2:22748619-22748638 Msa1240310:intron 30.0%
AAGAACTGAGAATACAGATA+TGG - chr8_2:22748651-22748670 Msa1240310:intron 30.0%
AGGTGTTTGTACTTTAACAA+GGG + chr8_2:22748683-22748702 None:intergenic 30.0%
TAGGTGTTTGTACTTTAACA+AGG + chr8_2:22748684-22748703 None:intergenic 30.0%
TTGTTAAAGTACAAACACCT+AGG - chr8_2:22748683-22748702 Msa1240310:CDS 30.0%
TTATCAAAATCATGTTAGGG+AGG - chr8_2:22748729-22748748 Msa1240310:intron 30.0%
TCAATGTTCTTAATCTTGTG+AGG - chr8_2:22748755-22748774 Msa1240310:intron 30.0%
!!! GCAACTTTCCTTTTAAAATC+TGG + chr8_2:22748898-22748917 None:intergenic 30.0%
AAAGTTCTTCACTACTACAA+AGG - chr8_2:22748949-22748968 Msa1240310:CDS 30.0%
!!! TATTACTTTTTAAGATGGGG+TGG + chr8_2:22749218-22749237 None:intergenic 30.0%
CTCTTGTAATTGTTTGTCAA+TGG + chr8_2:22749283-22749302 None:intergenic 30.0%
TCTTGATCACTAAAATCCAT+GGG + chr8_2:22749429-22749448 None:intergenic 30.0%
! ATTGATGATTTCAAGTCACT+CGG - chr8_2:22749684-22749703 Msa1240310:intron 30.0%
!! TGCCTTTGAAATATTTGGAA+AGG - chr8_2:22750015-22750034 Msa1240310:intron 30.0%
AAAGAAATCTTCGTGATTTC+AGG - chr8_2:22750071-22750090 Msa1240310:intron 30.0%
! TGAACAAAGAGAGTTTTCAA+TGG - chr8_2:22750106-22750125 Msa1240310:intron 30.0%
!! CCAAAAAATATTTTTGCCTC+GGG + chr8_2:22750149-22750168 None:intergenic 30.0%
!! GCCAAAAAATATTTTTGCCT+CGG + chr8_2:22750150-22750169 None:intergenic 30.0%
AGGAGTTAATCTCAAAAATG+TGG - chr8_2:22750369-22750388 Msa1240310:CDS 30.0%
TCTCAAAAATGTGGTTTGAA+TGG - chr8_2:22750378-22750397 Msa1240310:CDS 30.0%
ACGTAAAAGCTCTGTATAAA+AGG - chr8_2:22750495-22750514 Msa1240310:CDS 30.0%
TGCAAAAAGGTAAGTAAAAG+TGG + chr8_2:22750526-22750545 None:intergenic 30.0%
! TTTTCTTTGTCTAGGAGTTT+CGG - chr8_2:22750801-22750820 Msa1240310:CDS 30.0%
GAACTTTAAGCAATATCTCT+TGG + chr8_2:22748597-22748616 None:intergenic 30.0%
! TCATCTAAAATGAGAATCGA+GGG + chr8_2:22748619-22748638 None:intergenic 30.0%
! TCGATTCTCATTTTAGATGA+GGG - chr8_2:22748619-22748638 Msa1240310:intron 30.0%
AAGAACTGAGAATACAGATA+TGG - chr8_2:22748651-22748670 Msa1240310:intron 30.0%
AGGTGTTTGTACTTTAACAA+GGG + chr8_2:22748683-22748702 None:intergenic 30.0%
TAGGTGTTTGTACTTTAACA+AGG + chr8_2:22748684-22748703 None:intergenic 30.0%
TTGTTAAAGTACAAACACCT+AGG - chr8_2:22748683-22748702 Msa1240310:CDS 30.0%
TTATCAAAATCATGTTAGGG+AGG - chr8_2:22748729-22748748 Msa1240310:intron 30.0%
TCAATGTTCTTAATCTTGTG+AGG - chr8_2:22748755-22748774 Msa1240310:intron 30.0%
!!! GCAACTTTCCTTTTAAAATC+TGG + chr8_2:22748898-22748917 None:intergenic 30.0%
AAAGTTCTTCACTACTACAA+AGG - chr8_2:22748949-22748968 Msa1240310:CDS 30.0%
!!! TATTACTTTTTAAGATGGGG+TGG + chr8_2:22749218-22749237 None:intergenic 30.0%
CTCTTGTAATTGTTTGTCAA+TGG + chr8_2:22749283-22749302 None:intergenic 30.0%
TCTTGATCACTAAAATCCAT+GGG + chr8_2:22749429-22749448 None:intergenic 30.0%
! ATTGATGATTTCAAGTCACT+CGG - chr8_2:22749684-22749703 Msa1240310:intron 30.0%
!! TGCCTTTGAAATATTTGGAA+AGG - chr8_2:22750015-22750034 Msa1240310:intron 30.0%
AAAGAAATCTTCGTGATTTC+AGG - chr8_2:22750071-22750090 Msa1240310:intron 30.0%
! TGAACAAAGAGAGTTTTCAA+TGG - chr8_2:22750106-22750125 Msa1240310:intron 30.0%
!! CCAAAAAATATTTTTGCCTC+GGG + chr8_2:22750149-22750168 None:intergenic 30.0%
!! GCCAAAAAATATTTTTGCCT+CGG + chr8_2:22750150-22750169 None:intergenic 30.0%
AGGAGTTAATCTCAAAAATG+TGG - chr8_2:22750369-22750388 Msa1240310:CDS 30.0%
TCTCAAAAATGTGGTTTGAA+TGG - chr8_2:22750378-22750397 Msa1240310:CDS 30.0%
ACGTAAAAGCTCTGTATAAA+AGG - chr8_2:22750495-22750514 Msa1240310:CDS 30.0%
TGCAAAAAGGTAAGTAAAAG+TGG + chr8_2:22750526-22750545 None:intergenic 30.0%
! TTTTCTTTGTCTAGGAGTTT+CGG - chr8_2:22750801-22750820 Msa1240310:CDS 30.0%
! CTCATCTAAAATGAGAATCG+AGG + chr8_2:22748620-22748639 None:intergenic 35.0%
! CTCGATTCTCATTTTAGATG+AGG - chr8_2:22748618-22748637 Msa1240310:intron 35.0%
GGTTGAGAATACATTACAGA+AGG - chr8_2:22748870-22748889 Msa1240310:CDS 35.0%
! AGAAGGACCCAGATTTTAAA+AGG - chr8_2:22748887-22748906 Msa1240310:CDS 35.0%
GTAGTAGTGAAGAACTTTAC+TGG + chr8_2:22748947-22748966 None:intergenic 35.0%
TCATCACATTTCTCTGCAAT+TGG + chr8_2:22749135-22749154 None:intergenic 35.0%
CTCTTGATCACTAAAATCCA+TGG + chr8_2:22749430-22749449 None:intergenic 35.0%
!! ATAATTGACGAGCATCGAAA+AGG + chr8_2:22749485-22749504 None:intergenic 35.0%
GAACCAGACAAAAAAGTTTG+GGG + chr8_2:22749858-22749877 None:intergenic 35.0%
GGAACCAGACAAAAAAGTTT+GGG + chr8_2:22749859-22749878 None:intergenic 35.0%
ATCATCCATGATATGATCAG+TGG + chr8_2:22749883-22749902 None:intergenic 35.0%
TGAAAACTCTCTTTGTTCAG+CGG + chr8_2:22750105-22750124 None:intergenic 35.0%
!!! CCCGAGGCAAAAATATTTTT+TGG - chr8_2:22750146-22750165 Msa1240310:intron 35.0%
TCACCATACTTGTTTCAAGA+AGG - chr8_2:22750349-22750368 Msa1240310:CDS 35.0%
ACTCCTTCTTGAAACAAGTA+TGG + chr8_2:22750355-22750374 None:intergenic 35.0%
ACACTTGATGTGAAAGAATG+TGG - chr8_2:22750437-22750456 Msa1240310:CDS 35.0%
TGTATTTGTCAGGTAACATG+TGG - chr8_2:22750594-22750613 Msa1240310:CDS 35.0%
GTATTTGTCAGGTAACATGT+GGG - chr8_2:22750595-22750614 Msa1240310:CDS 35.0%
!!! TCCTTGCAGTTTTTAGTTCT+AGG - chr8_2:22750687-22750706 Msa1240310:CDS 35.0%
ACCTAGAACTAAAAACTGCA+AGG + chr8_2:22750691-22750710 None:intergenic 35.0%
GGTTCTTATATATCCTGTTC+TGG - chr8_2:22750708-22750727 Msa1240310:CDS 35.0%
TTCTGGTAGTTGTCTACTAA+TGG - chr8_2:22750725-22750744 Msa1240310:CDS 35.0%
TGTTGAGTAACATTCTGGTA+GGG + chr8_2:22750769-22750788 None:intergenic 35.0%
AATCCTGTTGAGTAACATTC+TGG + chr8_2:22750774-22750793 None:intergenic 35.0%
! CTCATCTAAAATGAGAATCG+AGG + chr8_2:22748620-22748639 None:intergenic 35.0%
! CTCGATTCTCATTTTAGATG+AGG - chr8_2:22748618-22748637 Msa1240310:intron 35.0%
GGTTGAGAATACATTACAGA+AGG - chr8_2:22748870-22748889 Msa1240310:CDS 35.0%
! AGAAGGACCCAGATTTTAAA+AGG - chr8_2:22748887-22748906 Msa1240310:CDS 35.0%
GTAGTAGTGAAGAACTTTAC+TGG + chr8_2:22748947-22748966 None:intergenic 35.0%
TCATCACATTTCTCTGCAAT+TGG + chr8_2:22749135-22749154 None:intergenic 35.0%
CTCTTGATCACTAAAATCCA+TGG + chr8_2:22749430-22749449 None:intergenic 35.0%
!! ATAATTGACGAGCATCGAAA+AGG + chr8_2:22749485-22749504 None:intergenic 35.0%
GAACCAGACAAAAAAGTTTG+GGG + chr8_2:22749858-22749877 None:intergenic 35.0%
GGAACCAGACAAAAAAGTTT+GGG + chr8_2:22749859-22749878 None:intergenic 35.0%
ATCATCCATGATATGATCAG+TGG + chr8_2:22749883-22749902 None:intergenic 35.0%
TGAAAACTCTCTTTGTTCAG+CGG + chr8_2:22750105-22750124 None:intergenic 35.0%
!!! CCCGAGGCAAAAATATTTTT+TGG - chr8_2:22750146-22750165 Msa1240310:intron 35.0%
TCACCATACTTGTTTCAAGA+AGG - chr8_2:22750349-22750368 Msa1240310:CDS 35.0%
ACTCCTTCTTGAAACAAGTA+TGG + chr8_2:22750355-22750374 None:intergenic 35.0%
ACACTTGATGTGAAAGAATG+TGG - chr8_2:22750437-22750456 Msa1240310:CDS 35.0%
TGTATTTGTCAGGTAACATG+TGG - chr8_2:22750594-22750613 Msa1240310:CDS 35.0%
GTATTTGTCAGGTAACATGT+GGG - chr8_2:22750595-22750614 Msa1240310:CDS 35.0%
!!! TCCTTGCAGTTTTTAGTTCT+AGG - chr8_2:22750687-22750706 Msa1240310:CDS 35.0%
ACCTAGAACTAAAAACTGCA+AGG + chr8_2:22750691-22750710 None:intergenic 35.0%
GGTTCTTATATATCCTGTTC+TGG - chr8_2:22750708-22750727 Msa1240310:CDS 35.0%
TTCTGGTAGTTGTCTACTAA+TGG - chr8_2:22750725-22750744 Msa1240310:CDS 35.0%
TGTTGAGTAACATTCTGGTA+GGG + chr8_2:22750769-22750788 None:intergenic 35.0%
AATCCTGTTGAGTAACATTC+TGG + chr8_2:22750774-22750793 None:intergenic 35.0%
! CAATCGGAGCAACTTTTCTT+AGG - chr8_2:22748511-22748530 Msa1240310:CDS 40.0%
CCAGACAATACAACTTTCCT+AGG + chr8_2:22748703-22748722 None:intergenic 40.0%
CCTAGGAAAGTTGTATTGTC+TGG - chr8_2:22748700-22748719 Msa1240310:CDS 40.0%
!! GAGGCCGAAGTTTTTAAAGA+TGG - chr8_2:22748774-22748793 Msa1240310:intron 40.0%
! AATTTTCTTGACGAGCTTCC+TGG - chr8_2:22748973-22748992 Msa1240310:CDS 40.0%
TCAACTTCAATCTTCTGCCT+GGG + chr8_2:22749033-22749052 None:intergenic 40.0%
! CTGCAATTGGCTTCAACTTT+GGG + chr8_2:22749122-22749141 None:intergenic 40.0%
! TCTGCAATTGGCTTCAACTT+TGG + chr8_2:22749123-22749142 None:intergenic 40.0%
CCAGTGGATATGATCAGATA+TGG + chr8_2:22749163-22749182 None:intergenic 40.0%
CCATATCTGATCATATCCAC+TGG - chr8_2:22749160-22749179 Msa1240310:CDS 40.0%
TATCTGATCATATCCACTGG+CGG - chr8_2:22749163-22749182 Msa1240310:CDS 40.0%
! AAGTTGTGTTTTGTCTCCTC+AGG - chr8_2:22749347-22749366 Msa1240310:intron 40.0%
CGGAACCAGACAAAAAAGTT+TGG + chr8_2:22749860-22749879 None:intergenic 40.0%
ATCCATGATATGATCAGTGG+CGG + chr8_2:22749880-22749899 None:intergenic 40.0%
TGACTCCATCTCTCATATCA+AGG + chr8_2:22749917-22749936 None:intergenic 40.0%
TGAACCTATGTGAATCAGCT+GGG - chr8_2:22749961-22749980 Msa1240310:intron 40.0%
GAAGTTTAACAATTCACCCG+AGG - chr8_2:22750130-22750149 Msa1240310:intron 40.0%
! TTTGGCTCAATCAAAGCATG+TGG - chr8_2:22750164-22750183 Msa1240310:intron 40.0%
TCAATCAAAGCATGTGGTGA+AGG - chr8_2:22750170-22750189 Msa1240310:intron 40.0%
CAATCAAAGCATGTGGTGAA+GGG - chr8_2:22750171-22750190 Msa1240310:intron 40.0%
ATGTGGTGAAGGGATTTCAT+TGG - chr8_2:22750181-22750200 Msa1240310:intron 40.0%
! GTGAAGGGATTTCATTGGTT+GGG - chr8_2:22750186-22750205 Msa1240310:intron 40.0%
! TGAAGGGATTTCATTGGTTG+GGG - chr8_2:22750187-22750206 Msa1240310:intron 40.0%
AACATCCAAGATGATGACAC+GGG + chr8_2:22750216-22750235 None:intergenic 40.0%
GAACATCCAAGATGATGACA+CGG + chr8_2:22750217-22750236 None:intergenic 40.0%
TAGCTTGACGAGTAACAGAT+GGG + chr8_2:22750247-22750266 None:intergenic 40.0%
ATAGCTTGACGAGTAACAGA+TGG + chr8_2:22750248-22750267 None:intergenic 40.0%
TCTGTTACTCGTCAAGCTAT+TGG - chr8_2:22750248-22750267 Msa1240310:intron 40.0%
! AAGCTATTGGTCGTGCTTTT+CGG - chr8_2:22750261-22750280 Msa1240310:intron 40.0%
! GAGACTTTCTTTTTCTGTCC+TGG + chr8_2:22750287-22750306 None:intergenic 40.0%
GTGTTTCAACTTCAAATGCG+CGG + chr8_2:22750421-22750440 None:intergenic 40.0%
TAGTAGACAACTACCAGAAC+AGG + chr8_2:22750724-22750743 None:intergenic 40.0%
CTGTTGAGTAACATTCTGGT+AGG + chr8_2:22750770-22750789 None:intergenic 40.0%
CTACCAGAATGTTACTCAAC+AGG - chr8_2:22750768-22750787 Msa1240310:CDS 40.0%
! CAATCGGAGCAACTTTTCTT+AGG - chr8_2:22748511-22748530 Msa1240310:CDS 40.0%
CCAGACAATACAACTTTCCT+AGG + chr8_2:22748703-22748722 None:intergenic 40.0%
CCTAGGAAAGTTGTATTGTC+TGG - chr8_2:22748700-22748719 Msa1240310:CDS 40.0%
!! GAGGCCGAAGTTTTTAAAGA+TGG - chr8_2:22748774-22748793 Msa1240310:intron 40.0%
! AATTTTCTTGACGAGCTTCC+TGG - chr8_2:22748973-22748992 Msa1240310:CDS 40.0%
TCAACTTCAATCTTCTGCCT+GGG + chr8_2:22749033-22749052 None:intergenic 40.0%
! CTGCAATTGGCTTCAACTTT+GGG + chr8_2:22749122-22749141 None:intergenic 40.0%
! TCTGCAATTGGCTTCAACTT+TGG + chr8_2:22749123-22749142 None:intergenic 40.0%
CCAGTGGATATGATCAGATA+TGG + chr8_2:22749163-22749182 None:intergenic 40.0%
CCATATCTGATCATATCCAC+TGG - chr8_2:22749160-22749179 Msa1240310:CDS 40.0%
TATCTGATCATATCCACTGG+CGG - chr8_2:22749163-22749182 Msa1240310:CDS 40.0%
! AAGTTGTGTTTTGTCTCCTC+AGG - chr8_2:22749347-22749366 Msa1240310:intron 40.0%
CGGAACCAGACAAAAAAGTT+TGG + chr8_2:22749860-22749879 None:intergenic 40.0%
ATCCATGATATGATCAGTGG+CGG + chr8_2:22749880-22749899 None:intergenic 40.0%
TGACTCCATCTCTCATATCA+AGG + chr8_2:22749917-22749936 None:intergenic 40.0%
TGAACCTATGTGAATCAGCT+GGG - chr8_2:22749961-22749980 Msa1240310:intron 40.0%
GAAGTTTAACAATTCACCCG+AGG - chr8_2:22750130-22750149 Msa1240310:intron 40.0%
! TTTGGCTCAATCAAAGCATG+TGG - chr8_2:22750164-22750183 Msa1240310:intron 40.0%
TCAATCAAAGCATGTGGTGA+AGG - chr8_2:22750170-22750189 Msa1240310:intron 40.0%
CAATCAAAGCATGTGGTGAA+GGG - chr8_2:22750171-22750190 Msa1240310:intron 40.0%
ATGTGGTGAAGGGATTTCAT+TGG - chr8_2:22750181-22750200 Msa1240310:intron 40.0%
! GTGAAGGGATTTCATTGGTT+GGG - chr8_2:22750186-22750205 Msa1240310:intron 40.0%
! TGAAGGGATTTCATTGGTTG+GGG - chr8_2:22750187-22750206 Msa1240310:intron 40.0%
AACATCCAAGATGATGACAC+GGG + chr8_2:22750216-22750235 None:intergenic 40.0%
GAACATCCAAGATGATGACA+CGG + chr8_2:22750217-22750236 None:intergenic 40.0%
TAGCTTGACGAGTAACAGAT+GGG + chr8_2:22750247-22750266 None:intergenic 40.0%
ATAGCTTGACGAGTAACAGA+TGG + chr8_2:22750248-22750267 None:intergenic 40.0%
TCTGTTACTCGTCAAGCTAT+TGG - chr8_2:22750248-22750267 Msa1240310:intron 40.0%
! AAGCTATTGGTCGTGCTTTT+CGG - chr8_2:22750261-22750280 Msa1240310:intron 40.0%
! GAGACTTTCTTTTTCTGTCC+TGG + chr8_2:22750287-22750306 None:intergenic 40.0%
GTGTTTCAACTTCAAATGCG+CGG + chr8_2:22750421-22750440 None:intergenic 40.0%
TAGTAGACAACTACCAGAAC+AGG + chr8_2:22750724-22750743 None:intergenic 40.0%
CTGTTGAGTAACATTCTGGT+AGG + chr8_2:22750770-22750789 None:intergenic 40.0%
CTACCAGAATGTTACTCAAC+AGG - chr8_2:22750768-22750787 Msa1240310:CDS 40.0%
AGCGTTTCACGCTAGGTATA+TGG + chr8_2:22748840-22748859 None:intergenic 45.0%
CGTGAAACGCTTTGACGATT+TGG - chr8_2:22748849-22748868 Msa1240310:CDS 45.0%
CTCAACTTCAATCTTCTGCC+TGG + chr8_2:22749034-22749053 None:intergenic 45.0%
!!! TTTTTAAGATGGGGTGGCCA+AGG + chr8_2:22749212-22749231 None:intergenic 45.0%
CCAGACAAAAAAGTTTGGGG+TGG + chr8_2:22749855-22749874 None:intergenic 45.0%
!!! CCACCCCAAACTTTTTTGTC+TGG - chr8_2:22749852-22749871 Msa1240310:intron 45.0%
TTCCGCCACTGATCATATCA+TGG - chr8_2:22749875-22749894 Msa1240310:intron 45.0%
GCAGACCTTGATATGAGAGA+TGG - chr8_2:22749909-22749928 Msa1240310:intron 45.0%
CTGAACCTATGTGAATCAGC+TGG - chr8_2:22749960-22749979 Msa1240310:intron 45.0%
GAACCTATGTGAATCAGCTG+GGG - chr8_2:22749962-22749981 Msa1240310:intron 45.0%
! TTTCCCCAGCTGATTCACAT+AGG + chr8_2:22749968-22749987 None:intergenic 45.0%
ATCAGCTGGGGAAAAACTTC+TGG - chr8_2:22749974-22749993 Msa1240310:intron 45.0%
! TGGAAAGGTTAGCCATGAAG+TGG - chr8_2:22750030-22750049 Msa1240310:intron 45.0%
! AAGGTTAGCCATGAAGTGGA+AGG - chr8_2:22750034-22750053 Msa1240310:intron 45.0%
! AGGTTAGCCATGAAGTGGAA+GGG - chr8_2:22750035-22750054 Msa1240310:intron 45.0%
GGTGAAGGGATTTCATTGGT+TGG - chr8_2:22750185-22750204 Msa1240310:intron 45.0%
GTATGGTGATCTTCCTCTTC+TGG + chr8_2:22750338-22750357 None:intergenic 45.0%
TTTACGTCTTCCCCCAACAA+CGG + chr8_2:22750482-22750501 None:intergenic 45.0%
TTCTGGTAGGGTAAACTGCA+CGG + chr8_2:22750757-22750776 None:intergenic 45.0%
AGCGTTTCACGCTAGGTATA+TGG + chr8_2:22748840-22748859 None:intergenic 45.0%
CGTGAAACGCTTTGACGATT+TGG - chr8_2:22748849-22748868 Msa1240310:CDS 45.0%
CTCAACTTCAATCTTCTGCC+TGG + chr8_2:22749034-22749053 None:intergenic 45.0%
!!! TTTTTAAGATGGGGTGGCCA+AGG + chr8_2:22749212-22749231 None:intergenic 45.0%
CCAGACAAAAAAGTTTGGGG+TGG + chr8_2:22749855-22749874 None:intergenic 45.0%
!!! CCACCCCAAACTTTTTTGTC+TGG - chr8_2:22749852-22749871 Msa1240310:intron 45.0%
TTCCGCCACTGATCATATCA+TGG - chr8_2:22749875-22749894 Msa1240310:intron 45.0%
GCAGACCTTGATATGAGAGA+TGG - chr8_2:22749909-22749928 Msa1240310:intron 45.0%
CTGAACCTATGTGAATCAGC+TGG - chr8_2:22749960-22749979 Msa1240310:intron 45.0%
GAACCTATGTGAATCAGCTG+GGG - chr8_2:22749962-22749981 Msa1240310:intron 45.0%
! TTTCCCCAGCTGATTCACAT+AGG + chr8_2:22749968-22749987 None:intergenic 45.0%
ATCAGCTGGGGAAAAACTTC+TGG - chr8_2:22749974-22749993 Msa1240310:intron 45.0%
! TGGAAAGGTTAGCCATGAAG+TGG - chr8_2:22750030-22750049 Msa1240310:intron 45.0%
! AAGGTTAGCCATGAAGTGGA+AGG - chr8_2:22750034-22750053 Msa1240310:intron 45.0%
! AGGTTAGCCATGAAGTGGAA+GGG - chr8_2:22750035-22750054 Msa1240310:intron 45.0%
GGTGAAGGGATTTCATTGGT+TGG - chr8_2:22750185-22750204 Msa1240310:intron 45.0%
GTATGGTGATCTTCCTCTTC+TGG + chr8_2:22750338-22750357 None:intergenic 45.0%
TTTACGTCTTCCCCCAACAA+CGG + chr8_2:22750482-22750501 None:intergenic 45.0%
TTCTGGTAGGGTAAACTGCA+CGG + chr8_2:22750757-22750776 None:intergenic 45.0%
! TCGTCAAAGCGTTTCACGCT+AGG + chr8_2:22748847-22748866 None:intergenic 50.0%
ACAGTGAAATCTACCAGGCC+AGG + chr8_2:22748994-22749013 None:intergenic 50.0%
TGGCCTGGTAGATTTCACTG+TGG - chr8_2:22748993-22749012 Msa1240310:CDS 50.0%
GCACCACAGTGAAATCTACC+AGG + chr8_2:22748999-22749018 None:intergenic 50.0%
TAGCCATGAAGTGGAAGGGT+TGG - chr8_2:22750039-22750058 Msa1240310:intron 50.0%
ACTCCAACCCTTCCACTTCA+TGG + chr8_2:22750045-22750064 None:intergenic 50.0%
AAGTGGAAGGGTTGGAGTCT+CGG - chr8_2:22750047-22750066 Msa1240310:intron 50.0%
!! AGCTGCTGATTCTCCAGAAG+AGG - chr8_2:22750322-22750341 Msa1240310:CDS 50.0%
ATTTCTCGAGAGCCCGTTGT+TGG - chr8_2:22750466-22750485 Msa1240310:CDS 50.0%
TTTCTCGAGAGCCCGTTGTT+GGG - chr8_2:22750467-22750486 Msa1240310:CDS 50.0%
TTACGTCTTCCCCCAACAAC+GGG + chr8_2:22750481-22750500 None:intergenic 50.0%
! TCGTCAAAGCGTTTCACGCT+AGG + chr8_2:22748847-22748866 None:intergenic 50.0%
ACAGTGAAATCTACCAGGCC+AGG + chr8_2:22748994-22749013 None:intergenic 50.0%
TGGCCTGGTAGATTTCACTG+TGG - chr8_2:22748993-22749012 Msa1240310:CDS 50.0%
GCACCACAGTGAAATCTACC+AGG + chr8_2:22748999-22749018 None:intergenic 50.0%
TAGCCATGAAGTGGAAGGGT+TGG - chr8_2:22750039-22750058 Msa1240310:intron 50.0%
ACTCCAACCCTTCCACTTCA+TGG + chr8_2:22750045-22750064 None:intergenic 50.0%
AAGTGGAAGGGTTGGAGTCT+CGG - chr8_2:22750047-22750066 Msa1240310:intron 50.0%
!! AGCTGCTGATTCTCCAGAAG+AGG - chr8_2:22750322-22750341 Msa1240310:CDS 50.0%
ATTTCTCGAGAGCCCGTTGT+TGG - chr8_2:22750466-22750485 Msa1240310:CDS 50.0%
TTTCTCGAGAGCCCGTTGTT+GGG - chr8_2:22750467-22750486 Msa1240310:CDS 50.0%
TTACGTCTTCCCCCAACAAC+GGG + chr8_2:22750481-22750500 None:intergenic 50.0%
TGGTGCTCAAACTTACGCCC+AGG - chr8_2:22749013-22749032 Msa1240310:CDS 55.0%
TCATATCCACTGGCGGAACC+AGG - chr8_2:22749170-22749189 Msa1240310:CDS 55.0%
CATATCCACTGGCGGAACCA+GGG - chr8_2:22749171-22749190 Msa1240310:CDS 55.0%
ATATCCACTGGCGGAACCAG+GGG - chr8_2:22749172-22749191 Msa1240310:CDS 55.0%
GGCATCCCGTGTCATCATCT+TGG - chr8_2:22750208-22750227 Msa1240310:intron 55.0%
! ATTGGTCGTGCTTTTCGGCC+AGG - chr8_2:22750266-22750285 Msa1240310:intron 55.0%
TTCTCGAGAGCCCGTTGTTG+GGG - chr8_2:22750468-22750487 Msa1240310:CDS 55.0%
GTAGGGTAAACTGCACGGCT+CGG + chr8_2:22750752-22750771 None:intergenic 55.0%
TGGTGCTCAAACTTACGCCC+AGG - chr8_2:22749013-22749032 Msa1240310:CDS 55.0%
TCATATCCACTGGCGGAACC+AGG - chr8_2:22749170-22749189 Msa1240310:CDS 55.0%
CATATCCACTGGCGGAACCA+GGG - chr8_2:22749171-22749190 Msa1240310:CDS 55.0%
ATATCCACTGGCGGAACCAG+GGG - chr8_2:22749172-22749191 Msa1240310:CDS 55.0%
GGCATCCCGTGTCATCATCT+TGG - chr8_2:22750208-22750227 Msa1240310:intron 55.0%
! ATTGGTCGTGCTTTTCGGCC+AGG - chr8_2:22750266-22750285 Msa1240310:intron 55.0%
TTCTCGAGAGCCCGTTGTTG+GGG - chr8_2:22750468-22750487 Msa1240310:CDS 55.0%
GTAGGGTAAACTGCACGGCT+CGG + chr8_2:22750752-22750771 None:intergenic 55.0%
GCCTATCGTCCGACGCATTC+AGG - chr8_2:22748807-22748826 Msa1240310:intron 60.0%
GCCTGAATGCGTCGGACGAT+AGG + chr8_2:22748811-22748830 None:intergenic 60.0%
TCGTCCGACGCATTCAGGCT+AGG - chr8_2:22748812-22748831 Msa1240310:intron 60.0%
CGTCCGACGCATTCAGGCTA+GGG - chr8_2:22748813-22748832 Msa1240310:intron 60.0%
GGACCCTAGCCTGAATGCGT+CGG + chr8_2:22748819-22748838 None:intergenic 60.0%
TCTTGACGAGCTTCCTGGCC+TGG - chr8_2:22748978-22748997 Msa1240310:CDS 60.0%
TATCCACTGGCGGAACCAGG+GGG - chr8_2:22749173-22749192 Msa1240310:CDS 60.0%
TCTCGAGAGCCCGTTGTTGG+GGG - chr8_2:22750469-22750488 Msa1240310:CDS 60.0%
GCCTATCGTCCGACGCATTC+AGG - chr8_2:22748807-22748826 Msa1240310:intron 60.0%
GCCTGAATGCGTCGGACGAT+AGG + chr8_2:22748811-22748830 None:intergenic 60.0%
TCGTCCGACGCATTCAGGCT+AGG - chr8_2:22748812-22748831 Msa1240310:intron 60.0%
CGTCCGACGCATTCAGGCTA+GGG - chr8_2:22748813-22748832 Msa1240310:intron 60.0%
GGACCCTAGCCTGAATGCGT+CGG + chr8_2:22748819-22748838 None:intergenic 60.0%
TCTTGACGAGCTTCCTGGCC+TGG - chr8_2:22748978-22748997 Msa1240310:CDS 60.0%
TATCCACTGGCGGAACCAGG+GGG - chr8_2:22749173-22749192 Msa1240310:CDS 60.0%
TCTCGAGAGCCCGTTGTTGG+GGG - chr8_2:22750469-22750488 Msa1240310:CDS 60.0%
GCGGAACCAGGGGGTGGCAA+GGG - chr8_2:22749182-22749201 Msa1240310:CDS 70.0%
CGGAACCAGGGGGTGGCAAG+GGG - chr8_2:22749183-22749202 Msa1240310:CDS 70.0%
GGAACCAGGGGGTGGCAAGG+GGG - chr8_2:22749184-22749203 Msa1240310:CDS 70.0%
GCGGAACCAGGGGGTGGCAA+GGG - chr8_2:22749182-22749201 Msa1240310:CDS 70.0%
CGGAACCAGGGGGTGGCAAG+GGG - chr8_2:22749183-22749202 Msa1240310:CDS 70.0%
GGAACCAGGGGGTGGCAAGG+GGG - chr8_2:22749184-22749203 Msa1240310:CDS 70.0%
CCACCCCCTGGTTCCGCCAG+TGG + chr8_2:22749179-22749198 None:intergenic 75.0%
CCACTGGCGGAACCAGGGGG+TGG - chr8_2:22749176-22749195 Msa1240310:CDS 75.0%
GGCGGAACCAGGGGGTGGCA+AGG - chr8_2:22749181-22749200 Msa1240310:CDS 75.0%
GGGGTGGCAAGGGGGAGCCT+TGG - chr8_2:22749192-22749211 Msa1240310:CDS 75.0%
CCACCCCCTGGTTCCGCCAG+TGG + chr8_2:22749179-22749198 None:intergenic 75.0%
CCACTGGCGGAACCAGGGGG+TGG - chr8_2:22749176-22749195 Msa1240310:CDS 75.0%
GGCGGAACCAGGGGGTGGCA+AGG - chr8_2:22749181-22749200 Msa1240310:CDS 75.0%
GGGGTGGCAAGGGGGAGCCT+TGG - chr8_2:22749192-22749211 Msa1240310:CDS 75.0%
! GGCTCCCCCTTGCCACCCCC+TGG + chr8_2:22749191-22749210 None:intergenic 80.0%
! GGCTCCCCCTTGCCACCCCC+TGG + chr8_2:22749191-22749210 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 22748499 22750845 22748499 ID=Msa1240310;Name=Msa1240310
chr8_2 mRNA 22748499 22750845 22748499 ID=Msa1240310-mRNA-1;Parent=Msa1240310;Name=Msa1240310-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|0.75|0.66|0.75|4|0|429
chr8_2 exon 22750272 22750845 22750272 ID=Msa1240310-mRNA-1:exon:8152;Parent=Msa1240310-mRNA-1
chr8_2 exon 22748848 22749365 22748848 ID=Msa1240310-mRNA-1:exon:8151;Parent=Msa1240310-mRNA-1
chr8_2 exon 22748678 22748738 22748678 ID=Msa1240310-mRNA-1:exon:8150;Parent=Msa1240310-mRNA-1
chr8_2 exon 22748499 22748635 22748499 ID=Msa1240310-mRNA-1:exon:8149;Parent=Msa1240310-mRNA-1
chr8_2 CDS 22750272 22750845 22750272 ID=Msa1240310-mRNA-1:cds;Parent=Msa1240310-mRNA-1
chr8_2 CDS 22748848 22749365 22748848 ID=Msa1240310-mRNA-1:cds;Parent=Msa1240310-mRNA-1
chr8_2 CDS 22748678 22748738 22748678 ID=Msa1240310-mRNA-1:cds;Parent=Msa1240310-mRNA-1
chr8_2 CDS 22748499 22748635 22748499 ID=Msa1240310-mRNA-1:cds;Parent=Msa1240310-mRNA-1
Gene Sequence

>Msa1240310

ATGTTTATTTTGCAATCGGAGCAACTTTTCTTAGGATACAAACAGTTTTCTTCCATTGTGTGTGATAATAGTAATAACAATGCATCAATATCATGCCAAGAGATATTGCTTAAAGTTCCCTCGATTCTCATTTTAGATGAGGGACACACTACAAGAACTGAGAATACAGATATGGTACAGTCCCTTGTTAAAGTACAAACACCTAGGAAAGTTGTATTGTCTGGAACTCTTTATCAAAATCATGTTAGGGAGGTTTTCAATGTTCTTAATCTTGTGAGGCCGAAGTTTTTAAAGATGGAAACATCTAAGCCTATCGTCCGACGCATTCAGGCTAGGGTCCATATACCTAGCGTGAAACGCTTTGACGATTTGGTTGAGAATACATTACAGAAGGACCCAGATTTTAAAAGGAAAGTTGCTGTAATTCATGATTTGCGTGAGATGACCAGTAAAGTTCTTCACTACTACAAAGGCAATTTTCTTGACGAGCTTCCTGGCCTGGTAGATTTCACTGTGGTGCTCAAACTTACGCCCAGGCAGAAGATTGAAGTTGAGAAAGCAAAGAAGATGTATACTGGGGAAAAACTTCTGGTGTTCAGTCAATATCTATTGCCTTTGAAATATTTGGAAAGGTTAGCCATGAAGTGGAAGGGTTGGAGTCTCGGAAAAGAAATCTTCGTGATTTCAGGAGAATCTTCCGCTGAACAAAGAGAGTTTTCAATGGAGAAGTTTAACAATTCACCCGAGGCAAAAATATTTTTTGGCTCAATCAAAGCATGTGGTGAAGGGATTTCATTGGTTGGGGCATCCCGTGTCATCATCTTGGATGTTCATCTCAACCCATCTGTTACTCGTCAAGCTATTGGTCGTGCTTTTCGGCCAGGACAGAAAAAGAAAGTCTCTGTGTATCGTTTGATAGCTGCTGATTCTCCAGAAGAGGAAGATCACCATACTTGTTTCAAGAAGGAGTTAATCTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACCGCGCATTTGAAGTTGAAACACTTGATGTGAAAGAATGTGGTGATCTATTTCTCGAGAGCCCGTTGTTGGGGGAAGACGTAACATGTGGGCATTCAAACAAGCTAAATTCAATATCAAATAGAGATGGGATATTTAAAGGTTCTTATATATCCTGTTCTGGTAGTTGTCTACTAATGGTCCGAGCCGTGCAGTTTACCCTACCAGAATGTTACTCAACAGGATTGATTACTTTTTCTTTGTCTAGGAGTTTCGGAAAAGACTATGCTCTTAGCTGA

Protein sequence

>Msa1240310

MFILQSEQLFLGYKQFSSIVCDNSNNNASISCQEILLKVPSILILDEGHTTRTENTDMVQSLVKVQTPRKVVLSGTLYQNHVREVFNVLNLVRPKFLKMETSKPIVRRIQARVHIPSVKRFDDLVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGNFLDELPGLVDFTVVLKLTPRQKIEVEKAKKMYTGEKLLVFSQYLLPLKYLERLAMKWKGWSLGKEIFVISGESSAEQREFSMEKFNNSPEAKIFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKKKVSVYRLIAADSPEEEDHHTCFKKELISKMWFEWNEYCGDRAFEVETLDVKECGDLFLESPLLGEDVTCGHSNKLNSISNRDGIFKGSYISCSGSCLLMVRAVQFTLPECYSTGLITFSLSRSFGKDYALS*